Citrus Sinensis ID: 033295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTSRC
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkwhpdrsaknpgvageaKCRFQQIQEAYSVLSdenkrsmydaglydpleeedeDFYGFVQEMVSMMNnvkdegdsfEDLQRMFVEMVDgmsfdfnydptdaqracvntskgkaakrgtsrc
Flexible Loop (DISEMBL)
mkwhpdrsaknpgvageakCRFQQIQEAYsvlsdenkrSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVntskgkaakrgtsrc
Low Complexity Region (SEG)
MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTSRC
Disordered region (IsUnstruct)
********************RFQQIQEAYSV*********YDAGLYDPLE*EDEDFYGFVQEMVSMMNNV******FEDLQRMFVEMVDGMSFDFNYDP***********************
Disordered Region (DISOPRED)
MKWHPDRSAKN*****EAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL**************************SFEDLQRMFVEMVDGMSFDF***************************
Disordered Region (DISEMBL)
*****************AKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRAC****************
Disordered Region (DISPRO)
*KW*PDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDF***************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTSRC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
B9KAB9	370	Chaperone protein DnaJ OS	yes	no	0.622	0.205	0.376	3e-07
A5IIT4	369	Chaperone protein DnaJ OS	yes	no	0.770	0.254	0.333	5e-07
B1LCI2	369	Chaperone protein DnaJ OS	yes	no	0.696	0.230	0.352	6e-07
Q9WZV3	369	Chaperone protein DnaJ OS	yes	no	0.696	0.230	0.352	8e-07
A6LJ63	373	Chaperone protein DnaJ OS	yes	no	0.311	0.101	0.585	1e-06
A6Q486	373	Chaperone protein DnaJ OS	yes	no	0.459	0.150	0.467	1e-06
Q5SLW9	350	Chaperone protein DnaJ 1	yes	no	0.836	0.291	0.339	1e-06
Q72GN6	350	Chaperone protein DnaJ OS	yes	no	0.836	0.291	0.339	1e-06
Q607A6	377	Chaperone protein DnaJ OS	yes	no	0.311	0.100	0.571	2e-06
B7IFE0	379	Chaperone protein DnaJ OS	yes	no	0.311	0.100	0.585	3e-06

>sp|B9KAB9|DNAJ_THENN Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 17/93 (18%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           +WHPDR  +N     EA+ RF++IQEAY VLSD  KR+MYD              +G+V 
Sbjct: 33  EWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVG 76

Query: 62  EMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFD 94
           E   +    +  G  FED+ R F  + +   FD
Sbjct: 77  EQ-PVYQEAETGGSFFEDVFREFENIFNRDIFD 108

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) (taxid: 309803)

>sp|A5IIT4|DNAJ_THEP1 Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 23/117 (19%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           +WHPDR  +N     EA+ RF++IQEAY VLSD  KR+MYD              +G+V 
Sbjct: 33  EWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVG 76

Query: 62  EMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118
           E  +      + G  FED+ + F  + +   FD  +     Q       K + A+RG
Sbjct: 77  EQPTYQET--ESGGFFEDIFKEFENIFNRDIFDVFFGERPGQE-----EKREYARRG 126

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

>sp|B1LCI2|DNAJ_THESQ Chaperone protein DnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           +WHPDR  +N     EA+ RF++IQEAY VLSD  KR+MYD              +G+V 
Sbjct: 33  EWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVG 76

Query: 62  EMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFD--FNYDPTDAQR 104
           E  +      + G  F+D+ R F  + +   FD  F   P   +R
Sbjct: 77  EQPTYQET--ESGGFFDDIFREFENIFNRDIFDVFFGERPHQEER 119

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga sp. (strain RQ2) (taxid: 126740)

>sp|Q9WZV3|DNAJ_THEMA Chaperone protein DnaJ OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=dnaJ PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           +WHPDR  +N     EA+ RF++IQEAY VLSD  KR+MYD              +G+V 
Sbjct: 33  EWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVG 76

Query: 62  EMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFD--FNYDPTDAQR 104
           E  +      + G  F+D+ R F  + +   FD  F   P   +R
Sbjct: 77  EQPTYQET--ESGGFFDDIFRDFENIFNRDIFDVFFGERPHQEER 119

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|A6LJ63|DNAJ_THEM4 Chaperone protein DnaJ OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 3/41 (7%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          KWHPDR+ +N  +A E   +F++IQEAY VLSD  KR+MYD
Sbjct: 31 KWHPDRNYENKKLAEE---KFKEIQEAYEVLSDPEKRAMYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

>sp|A6Q486|DNAJ_NITSB Chaperone protein DnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 6/62 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
          +K+HPDR+  NP    EA+ +F+ I EAY VLSDE KR++YD   Y     E++ F GF 
Sbjct: 30 LKYHPDRNPDNP----EAEEKFKLINEAYQVLSDEEKRALYDQ--YGKAGLENQGFSGFN 83

Query: 61 QE 62
          Q+
Sbjct: 84 QK 85

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nitratiruptor sp. (strain SB155-2) (taxid: 387092)

>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-F 59
           +K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F
Sbjct: 28  LKYHPDR---NPGDK-EAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLF 83

Query: 60  VQEMVSMMNNVK-DEGDSFE-DLQRMFVEMVDGMSFDFNYDPTDAQRAC 106
            QE+  +  + +   G+  E +++    +++ G   +  Y       AC
Sbjct: 84  FQEVFGVRGHRRPPRGEDLEAEVEVELQDLLHGAEKEVRYTRLVPCEAC 132

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-F 59
           +K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F
Sbjct: 28  LKYHPDR---NPGDK-EAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLF 83

Query: 60  VQEMVSMMNNVK-DEGDSFE-DLQRMFVEMVDGMSFDFNYDPTDAQRAC 106
            QE+  +  + +   G+  E +++    +++ G   +  Y       AC
Sbjct: 84  FQEVFGVRGHRRPPRGEDLEAEVEVELQDLLHGAEKEVRYTRLVPCEAC 132

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

>sp|Q607A6|DNAJ_METCA Chaperone protein DnaJ OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=dnaJ PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPDR+  NP    EA+ RF+ ++EAY VLSD  KRS YD
Sbjct: 30 MKYHPDRNKDNP----EAEERFKSVKEAYDVLSDPKKRSAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

>sp|B7IFE0|DNAJ_THEAB Chaperone protein DnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 3/41 (7%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          KWHPDR+ +N     EA+ +F++IQEAY VLSD  KR+MYD
Sbjct: 31 KWHPDRNHQN---RKEAEEKFKEIQEAYEVLSDPEKRAMYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosipho africanus (strain TCF52B) (taxid: 484019)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
255633060	163	unknown [Glycine max]	0.991	0.742	0.714	3e-44
224123920	160	predicted protein [Populus trichocarpa]	1.0	0.762	0.766	2e-43
357511777	164	DnaJ homolog subfamily B member [Medicag	0.959	0.713	0.722	2e-42
351722303	164	DnaJ-like protein [Glycine max] gi|23428	0.991	0.737	0.708	3e-42
388497224	161	unknown [Lotus japonicus]	0.983	0.745	0.704	6e-42
359806699	163	chaperone protein DnaJ-like [Glycine max	0.991	0.742	0.690	1e-41
269999990	163	DnaJ-like protein [Glycine max]	0.991	0.742	0.690	3e-41
297853508	156	hypothetical protein ARALYDRAFT_474793 [	0.959	0.75	0.714	6e-39
21554587	156	DnaJ protein, putative [Arabidopsis thal	0.959	0.75	0.705	2e-38
449454042	161	PREDICTED: chaperone protein DnaJ-like [	0.991	0.751	0.637	1e-37

>gi|255633060|gb|ACU16885.1| unknown [Glycine max]

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 100/126 (79%), Gaps = 5/126 (3%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           M+WHPD+ A+NP  AGEAK RFQQIQEAYSVLSD++KRSMYDAGLYDPLEEED+DF  F+
Sbjct: 37  MRWHPDKWAQNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQDFCDFM 96

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV-----DGMSFDFNYDPTDAQRACVNTSKGKAA 115
           QEM+SMMNNVKDEGDS EDLQRMFVEMV      G+ FD N D T  +R  VN SKG A 
Sbjct: 97  QEMISMMNNVKDEGDSLEDLQRMFVEMVGEDHGHGIGFDLNQDQTAGKRGRVNGSKGNAP 156

Query: 116 KRGTSR 121
           KR  SR
Sbjct: 157 KRSNSR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123920|ref|XP_002330242.1| predicted protein [Populus trichocarpa] gi|222871698|gb|EEF08829.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 106/124 (85%), Gaps = 2/124 (1%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           MKWHPD+ A+NPGVAGEAK RFQQIQEAYSVLSD++K+SMYDAGLYDPLEEEDE+F  F+
Sbjct: 37  MKWHPDKWAQNPGVAGEAKRRFQQIQEAYSVLSDQSKKSMYDAGLYDPLEEEDEEFCDFM 96

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118
           QEM+SMMNNVKDEGDSFEDLQ+MFVEMV  +G SFD N D    +RA V TSKG AAKR 
Sbjct: 97  QEMISMMNNVKDEGDSFEDLQKMFVEMVGGNGASFDLNDDAASKKRARVTTSKGNAAKRS 156

Query: 119 TSRC 122
           TS C
Sbjct: 157 TSCC 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511777|ref|XP_003626177.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355501192|gb|AES82395.1| DnaJ homolog subfamily B member [Medicago truncatula]

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 2/119 (1%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           M+WHPD+ A+NP  AGEAK RFQQIQEAYSVLSDE+KRSMYDAGLYDPLEEED++F  F+
Sbjct: 41  MRWHPDKFARNPTTAGEAKRRFQQIQEAYSVLSDESKRSMYDAGLYDPLEEEDQEFCDFM 100

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMSFDFNYDPTDAQRACVNTSKGKAAKR 117
            EM+SMMNNVKDEGDS EDLQRMFVEMV  DGM+FD N + T  +R   + S+G AAKR
Sbjct: 101 SEMISMMNNVKDEGDSLEDLQRMFVEMVGGDGMNFDMNQNQTAGKRGRSSGSRGNAAKR 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722303|ref|NP_001238007.1| DnaJ-like protein [Glycine max] gi|23428796|gb|AAM23263.1| DnaJ-like protein [Glycine max]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 100/127 (78%), Gaps = 6/127 (4%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYS-VLSDENKRSMYDAGLYDPLEEEDEDFYGF 59
           M+WHPD+ A+NP  AGEAK RFQQIQEAYS VLSD++KRSMYDAGLYDPLEEED+DF  F
Sbjct: 37  MRWHPDKWAQNPATAGEAKRRFQQIQEAYSAVLSDKSKRSMYDAGLYDPLEEEDQDFCDF 96

Query: 60  VQEMVSMMNNVKDEGDSFEDLQRMFVEMV-----DGMSFDFNYDPTDAQRACVNTSKGKA 114
           +QEM+SMMNNVKDEGDS EDLQRMFVEMV      G+  D N D T  +R  VN SKG A
Sbjct: 97  MQEMISMMNNVKDEGDSLEDLQRMFVEMVGEDHGHGIGSDLNQDQTAGKRGRVNGSKGNA 156

Query: 115 AKRGTSR 121
           AKR  SR
Sbjct: 157 AKRRNSR 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497224|gb|AFK36678.1| unknown [Lotus japonicus]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 99/122 (81%), Gaps = 2/122 (1%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           MKWHPDR  +NP   GEAK RFQ+IQEAYSVLSD++KRSMYDAGL+DPLEEED+ F  F+
Sbjct: 38  MKWHPDRWTRNPATTGEAKRRFQEIQEAYSVLSDQSKRSMYDAGLHDPLEEEDQGFCEFM 97

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118
            EM+SMMNNVKDEG+S EDLQRMFVEMV  DGMSFD + D T  +RA  + SKG AA+R 
Sbjct: 98  NEMISMMNNVKDEGESLEDLQRMFVEMVGGDGMSFDLDQDQTAGKRARGSGSKGSAAQRS 157

Query: 119 TS 120
           TS
Sbjct: 158 TS 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806699|ref|NP_001241290.1| chaperone protein DnaJ-like [Glycine max] gi|255640851|gb|ACU20708.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 97/126 (76%), Gaps = 5/126 (3%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           M+WHPD+ A NP  AGEAK RFQQIQEAYSVLSD++KRSMYDAGLYDPLEEED+DF  F+
Sbjct: 37  MRWHPDKWALNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQDFCDFM 96

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV-----DGMSFDFNYDPTDAQRACVNTSKGKAA 115
           QEM+SMMNNVKDEGDS EDLQRMFV+MV      G+  D N D T  +R  V  SKG A 
Sbjct: 97  QEMISMMNNVKDEGDSLEDLQRMFVDMVGGDHGHGIGVDLNQDRTAGKRGRVYGSKGNAP 156

Query: 116 KRGTSR 121
           KR  SR
Sbjct: 157 KRSNSR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269999990|gb|ACZ57923.1| DnaJ-like protein [Glycine max]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 97/126 (76%), Gaps = 5/126 (3%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           M+WHPD+ A NP  AGEAK RFQQIQEAYSVLSD++KRSMYDAGLYDPLEEED+DF  F+
Sbjct: 37  MRWHPDKWALNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQDFCDFM 96

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV-----DGMSFDFNYDPTDAQRACVNTSKGKAA 115
           QEM+SMMNNVKDEGDS EDLQRMFV+MV      G+  D N D T  +R  V  SKG A 
Sbjct: 97  QEMISMMNNVKDEGDSLEDLQRMFVDMVGGDHGHGIGVDLNQDRTAGKRGRVYGSKGNAP 156

Query: 116 KRGTSR 121
           KR  SR
Sbjct: 157 KRRNSR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853508|ref|XP_002894635.1| hypothetical protein ARALYDRAFT_474793 [Arabidopsis lyrata subsp. lyrata] gi|297340477|gb|EFH70894.1| hypothetical protein ARALYDRAFT_474793 [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 100/119 (84%), Gaps = 2/119 (1%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           MKWHPDR A+NPGVAGEAK RFQQIQEAYSVL+DENKRSMYD GLYDPLE++D+DF  F+
Sbjct: 38  MKWHPDRYARNPGVAGEAKRRFQQIQEAYSVLNDENKRSMYDVGLYDPLEDDDDDFCDFM 97

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMSFDFNYDPTDAQRACVNTSKGKAAKR 117
           QEM+SMMNNVKDEG+S EDLQRMF +MV  DG++FD N +P  ++R  VN S+  AA R
Sbjct: 98  QEMISMMNNVKDEGESLEDLQRMFTDMVGGDGVNFDCNNNPKASKRPRVNVSRTSAAMR 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554587|gb|AAM63624.1| DnaJ protein, putative [Arabidopsis thaliana]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 99/119 (83%), Gaps = 2/119 (1%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           MKWHPDR A+NPGVAGEAK RFQQIQEAYSVL+DENKRSMYD GLYDP E++D+DF  F+
Sbjct: 38  MKWHPDRYARNPGVAGEAKRRFQQIQEAYSVLNDENKRSMYDVGLYDPHEDDDDDFCDFM 97

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMSFDFNYDPTDAQRACVNTSKGKAAKR 117
           QEM+SMMNNVKDEG+S EDLQRMF +MV  DG+S+D N +P  ++R  VN S+  AA R
Sbjct: 98  QEMISMMNNVKDEGESLEDLQRMFTDMVGGDGVSYDCNNNPKGSKRPRVNVSRSSAAMR 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454042|ref|XP_004144765.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 99/124 (79%), Gaps = 3/124 (2%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           +KWHPDR  +NP VAGEAK +FQ +QEAYSVLSD+ KRS+YDAGLYDP EE+DE+F  F+
Sbjct: 37  LKWHPDRWMRNPAVAGEAKRQFQLVQEAYSVLSDQTKRSVYDAGLYDPTEEDDEEFCDFM 96

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMS-FDFNYDPTDAQRACVNTSKGKAAKR 117
           QEM++MMNNVK EGDSFEDLQ+MF+EMV  DG+  F+ N +PT ++R   N S+  A KR
Sbjct: 97  QEMITMMNNVKPEGDSFEDLQKMFMEMVGSDGVGMFNMNDNPTASKRPRPNGSRSSAPKR 156

Query: 118 GTSR 121
            +SR
Sbjct: 157 SSSR 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2011846	156	AT1G56300 [Arabidopsis thalian	0.959	0.75	0.697	2e-40
TAIR|locus:2013940	165	AT1G71000 [Arabidopsis thalian	0.745	0.551	0.585	1.3e-22
TAIR|locus:2087492	230	AT3G14200 "AT3G14200" [Arabido	0.729	0.386	0.505	3.6e-18
TAIR|locus:1009023133	201	AT1G72416 [Arabidopsis thalian	0.704	0.427	0.438	2.6e-15
GENEDB_PFALCIPARUM|PFL0565w	244	PFL0565w "heat shock protein D	0.688	0.344	0.448	1e-09
UNIPROTKB|Q7KQK3	244	PFL0565w "Heat shock protein D	0.688	0.344	0.448	1e-09
FB|FBgn0027599	540	CG2790 [Drosophila melanogaste	0.803	0.181	0.336	3.3e-09
UNIPROTKB|C9J2C4	228	DNAJB6 "DnaJ homolog subfamily	0.319	0.171	0.547	7.4e-09
DICTYBASE|DDB_G0291568	459	dnaja1 "DnaJ homolog subfamily	0.327	0.087	0.545	1.6e-08
UNIPROTKB|F1NV86	216	DNAJB9 "Uncharacterized protei	0.303	0.171	0.595	2.7e-08

TAIR|locus:2011846 AT1G56300 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 83/119 (69%), Positives = 97/119 (81%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
             MKWHPDR A+NPGVAGEAK RFQQIQEAYSVL+DENKRSMYD GLYDP E++D+DF  F+
Sbjct:    38 MKWHPDRYARNPGVAGEAKRRFQQIQEAYSVLNDENKRSMYDVGLYDPHEDDDDDFCDFM 97

Query:    61 QEMVSMMNNVKDEGDSFEDLQRMFVEMV--DGMSFDFNYDPTDAQRACVNTSKGKAAKR 117
             QEM+SMMNNVKD G+S EDLQRMF +MV  DG+S+D N +P   +R  VN S+  AA R
Sbjct:    98 QEMISMMNNVKDAGESLEDLQRMFTDMVGGDGVSYDCNNNPKGNKRPRVNISRSSAAMR 156

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2013940 AT1G71000 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 58/99 (58%), Positives = 68/99 (68%)

Query:     3 WHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQE 62
             WHPDR  K+P  +GEAK RFQQIQEAYSVLSDE KRS YD GLYD    EDE ++ FVQE
Sbjct:    35 WHPDRWTKDPFRSGEAKRRFQQIQEAYSVLSDERKRSSYDVGLYD--SGEDEGYFDFVQE 92

Query:    63 MVSMMNNVKDEGD--SFEDLQRMFVEMVDGMSFDFNYDP 99
             MVS+M+  K E    S E+LQ M    VD M ++F  +P
Sbjct:    93 MVSLMSQTKREEKQYSLEELQTM----VDDMVYEFQSEP 127

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2087492 AT3G14200 "AT3G14200" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 48/95 (50%), Positives = 63/95 (66%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-F 59
             ++WHPDR +    V  EAK +FQ IQEAYSVLSD NKR +YD G Y+  +++D++  G F
Sbjct:    37 LRWHPDRCSSMEFVE-EAKKKFQAIQEAYSVLSDSNKRFLYDVGAYNTDDDDDQNGMGDF 95

Query:    60 VQEMVSMMNNVK----DEGDSFEDLQRMFVEMVDG 90
             + EM +MMN  K    + GDSFE LQ +F EM  G
Sbjct:    96 LNEMATMMNQSKPSDNNTGDSFEQLQDLFNEMFQG 130

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:1009023133 AT1G72416 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 39/89 (43%), Positives = 56/89 (62%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
             +KWHPDR  +      EAK +FQ IQ AYSVLSD NKR +YD G YD  ++++     F+
Sbjct:    30 LKWHPDRFLEEIE-KDEAKMKFQSIQRAYSVLSDSNKRLLYDVGAYDS-DDDETGMADFI 87

Query:    61 QEMVSMMNNVKDEGD-SFEDLQRMFVEMV 88
              EMV++M   +  GD S E+ + +F E++
Sbjct:    88 NEMVTLMAQTQSTGDESLEEFEELFQELL 116

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

GENEDB_PFALCIPARUM|PFL0565w PFL0565w "heat shock protein DNAJ homologue Pfj4" [Plasmodium falciparum (taxid:5833)]

 Score = 142 (55.0 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 44/98 (44%), Positives = 50/98 (51%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
             MKWHPD   KNP    EA  RF+QI EAY VLSD  +R  YD  LY      DE++    
Sbjct:    31 MKWHPD---KNPNNKAEATERFKQISEAYEVLSDPKRRRKYD--LYGT----DENY--MA 79

Query:    61 QEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYD 98
              E     N  K+ G  F D QR+F EM  G S  F  D
Sbjct:    80 DENDEFSNFHKNFG--FNDAQRIF-EMFFGDSSPFGND 114

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q7KQK3 PFL0565w "Heat shock protein DNAJ homologue Pfj4" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 142 (55.0 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 44/98 (44%), Positives = 50/98 (51%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
             MKWHPD   KNP    EA  RF+QI EAY VLSD  +R  YD  LY      DE++    
Sbjct:    31 MKWHPD---KNPNNKAEATERFKQISEAYEVLSDPKRRRKYD--LYGT----DENY--MA 79

Query:    61 QEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYD 98
              E     N  K+ G  F D QR+F EM  G S  F  D
Sbjct:    80 DENDEFSNFHKNFG--FNDAQRIF-EMFFGDSSPFGND 114

GO:0005575 "cellular_component" evidence=ND

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

FB|FBgn0027599 CG2790 [Drosophila melanogaster (taxid:7227)]

 Score = 127 (49.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
 Identities = 35/104 (33%), Positives = 51/104 (49%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
             ++WHPD   KNP    EAK RFQ IQ+AY VLSD  +RS YD      L  ++ D+    
Sbjct:    28 LRWHPD---KNPDRLAEAKERFQLIQQAYEVLSDPQERSWYDNHREQILRGKNSDYAENC 84

Query:    61 QEMVSMMNN--VKDEGDSFEDLQRMFVEM-VDGMSFDFNYDPTD 101
              ++     +   K  GD+     R++ ++ V   S D  +   D
Sbjct:    85 LDVFQFFTSSCYKGYGDNEHGFYRVYTDVFVQIASEDLEFMDKD 128

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|C9J2C4 DNAJB6 "DnaJ homolog subfamily B member 6" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
             +KWHPD   KNP    EA+ +F+Q+ EAY VLSD  KR +YD
Sbjct:    28 LKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

DICTYBASE|DDB_G0291568 dnaja1 "DnaJ homolog subfamily A member 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 106 (42.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query:     1 MKWHPDRSAKNPGV-AGEAKCRFQQIQEAYSVLSDENKRSMYDA 43
             +K+HPD++ + PG  A EAK  F+ I EAY VLSD  KR MYD+
Sbjct:    31 VKYHPDKN-QGPGKDAAEAK--FKDISEAYEVLSDPEKRKMYDS 71

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NV86 DNAJB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 111 (44.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query:     1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
             MK+HPD++ K+PG   EAK  F++I EAY  LSDENKR  YD
Sbjct:    51 MKYHPDKN-KSPGA--EAK--FREIAEAYETLSDENKRREYD 87

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_1330037	hypothetical protein (160 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.504
	grail3.0261001401	hypothetical protein (124 aa)			•						0.504
	eugene3.02610008	hypothetical protein (132 aa)			•						0.504
	eugene3.00130164	hypothetical protein (660 aa)			•						0.504
	eugene3.00120231	hypothetical protein (668 aa)			•						0.504
	estExt_fgenesh4_pm.C_LG_I0291	SubName- Full=Putative uncharacterized protein; (666 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_III0234	hypothetical protein (666 aa)			•						0.504
	grail3.0261001101	hypothetical protein (648 aa)			•						0.503
	grail3.0009008001	hypothetical protein (572 aa)			•						0.503
	fgenesh4_pm.C_LG_III000644	hypothetical protein (651 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	9e-13
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-12
pfam00226	63	pfam00226, DnaJ, DnaJ domain	6e-12
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	8e-12
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-11
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-09
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	5e-09
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	7e-09
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-08
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-08
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	6e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-07
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	5e-07
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-06
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-06
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-06
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-06
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-06
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-06
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-06
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	3e-06
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	3e-06
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	4e-06
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	4e-06
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-06
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	6e-06
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	7e-06
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	8e-06
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	6e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-04
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	6e-04
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	0.002

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGF 59
           K+HPDR+  +     EA+ +F++I EAY VLSD  KR+ YD   +   +      +GF
Sbjct: 30 KKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGF 84

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 62.1 bits (152), Expect = 2e-12
 Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPDR   NPG   EA+ +F++I+EAY VLSD  KR+ YD
Sbjct: 30 MKYHPDR---NPGDK-EAEEKFKEIKEAYEVLSDPQKRAAYD 67

Length = 371

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 56.0 bits (136), Expect = 6e-12
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD   KNPG    A+ +F++I EAY VLSD  KR++YD
Sbjct: 26 LKYHPD---KNPG-DPAAEEKFKEINEAYEVLSDPEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 22/117 (18%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           +WHPDR   +P    EA+ +F++IQEAY VLSD  KR+MYD              +G+V 
Sbjct: 31  EWHPDR---HPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR-------------FGYVG 74

Query: 62  EMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118
           E        +  G  FED+ + F  + +   FD  +     Q       + + A+RG
Sbjct: 75  E-QPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQE-----EQREYARRG 125

Length = 369

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 59.5 bits (145), Expect = 1e-11
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 5/42 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
           K+HPDR+ K+     EA+ +F++I EAY VLSD  KR+ YD
Sbjct: 26 KKYHPDRN-KDK----EAEEKFKEINEAYEVLSDPEKRAQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 13/67 (19%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED--- 53
          MK+HPD++ K P     A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED   
Sbjct: 31 MKYHPDKN-KEPD----AEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFR 85

Query: 54 -EDFYGF 59
            DF GF
Sbjct: 86 GADFGGF 92

Length = 377

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 48.8 bits (117), Expect = 5e-09
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 37
          +K+HPD   KNPG   EA+ +F++I EAY VLSD  K
Sbjct: 27 LKYHPD---KNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           K+HPD + KNP    EA+ +F++I EAY VLSD  KR +YD   +       +   G   
Sbjct: 30  KYHPDFN-KNP----EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEG 84

Query: 62  EMVSMMNNVKDEGDSFEDLQRMF 84
                  N+    D  ED+  +F
Sbjct: 85  FSDFGGGNI---EDILEDVFDIF 104

Length = 382

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA-GLYDPLEEEDEDFYGF 59
           +K+HPD+   N G   EA+ +F++I EAY VLSD  K++ YD  G  D          GF
Sbjct: 30  IKYHPDK---NKGNK-EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGF 85

Query: 60  VQEMVSMMNNVKDEGDSF 77
                S M    D  DSF
Sbjct: 86  GGFDFSDMGGFGDIFDSF 103

Length = 380

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD   KNPG A EA+ RF+++ EAY VLSD  KR  YD
Sbjct: 27 VKYHPD---KNPGDA-EAEKRFKEVSEAYEVLSDAQKRESYD 64

Length = 391

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          KWHPD    +PG   EA+ +F++I EAY VLSD  KR  YD
Sbjct: 30 KWHPD---LHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYD 67

Length = 365

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 45.6 bits (109), Expect = 6e-08
 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 4/34 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 34
          +K+HPD++  +P    EA+ +F++I EAY VLSD
Sbjct: 26 LKYHPDKNPDDP----EAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 22/77 (28%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--------- 51
           MK+HPDR   NPG   EA+  F++  EAY VLSD  KR +YD   ++ L           
Sbjct: 30  MKYHPDR---NPG-DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGF 85

Query: 52  ED---------EDFYGF 59
           +D         EDF+GF
Sbjct: 86  DDIFSSFGDIFEDFFGF 102

Length = 366

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 5/42 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPDR+ K  G A     +F QI EAY+VLSD  KR+ YD
Sbjct: 28 LKYHPDRN-KEKGAAE----KFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +++HPDR+  NP    EA+ +F++  EAY VL D  KR+ YD
Sbjct: 30 LQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYD 67

Length = 373

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD   KNP    EA+  F+++ EAY VLS+++KR  YD
Sbjct: 29 LKYHPD---KNPD-NKEAEEHFKEVNEAYEVLSNDDKRRRYD 66

Length = 397

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +++HPD   KNPG   EA+ +F++  EAY VLSD +KRS YD
Sbjct: 31 IQYHPD---KNPG-DKEAEEKFKEAAEAYDVLSDPDKRSRYD 68

Length = 386

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPDR+A +     EA+ +F+ I EAY VLSDE KR++YD
Sbjct: 29 LKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYD 66

Length = 369

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE 51
          + HPD    NP    EA+ +F++I  AY VLSD  KR + D G  DPLE 
Sbjct: 30 ELHPD---VNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLG-GDPLES 73

Length = 378

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 5/41 (12%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          K+HPD + K PG    A+ +++++QEAY  LSD  KR+ YD
Sbjct: 31 KYHPDIN-KEPG----AEEKYKEVQEAYETLSDPQKRAAYD 66

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 4/41 (9%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          K+HPD    NPG   EA+ +F++I EAY +LSD  KR+ YD
Sbjct: 32 KYHPD---LNPG-DKEAEQKFKEINEAYEILSDPQKRAQYD 68

Length = 386

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          ++HPD +  +      A+ RF++I EAY VLSDE KR  YD
Sbjct: 36 EYHPDANKGDAK----AEERFKEISEAYDVLSDEKKRKEYD 72

Length = 389

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 4  HPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          HPD    NPG    A+ RF+ + EA+ VLSD  KR  YD
Sbjct: 38 HPDA---NPGDP-AAEERFKAVSEAHDVLSDPAKRKEYD 72

Length = 392

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          K+HPD + K  G    A  +F++I EAY VLSD+ KR+ YD
Sbjct: 31 KYHPDIN-KEEG----ADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 48
          +K+HPDR+  +P VA E   +F++I EAY +LSD  +R+ YD    D 
Sbjct: 32 LKYHPDRNPGDPKVAEE---KFKEINEAYEILSDPERRAEYDKIGADN 76

Length = 237

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 10/57 (17%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED 53
           K+HPD S +       A+ +F++I EAY+VLSD+ KR  YD    AG+ D   +ED
Sbjct: 31 RKYHPDVSEEE-----GAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM-DGFSQED 81

Length = 378

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           +K+HPD++  N     EA+  F++  EAY VL D+NKR+ YD   +    E    F GF 
Sbjct: 29  IKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF-EGGGGFEGFS 83

Query: 61  QEMVSMMNNVKDEGDSFE 78
                  +  +D GD F+
Sbjct: 84  GGFSGFSDIFEDFGDIFD 101

Length = 365

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQ 61
           K+HPD S +      +A+ RF+++ EA+ VLSDE +R+ YD  L+      D  F    Q
Sbjct: 31  KYHPDVSKEP-----DAEARFKEVAEAWEVLSDEQRRAEYDQ-LW--QHRNDPQFNRQFQ 82

Query: 62  EMVSMMNNVKDEGDSFEDL 80
                  N +D  D F  +
Sbjct: 83  HGDGQSFNAEDFDDIFSSI 101

Length = 306

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 23/99 (23%)

Query: 2   KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD------------------A 43
           K+HPD + K+PG    A+ +F++I EAY+VLSD  KR +YD                   
Sbjct: 31  KYHPDVN-KSPG----AEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPP 85

Query: 44  GLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQR 82
           G  D       DF  F Q++          GD F  + R
Sbjct: 86  GGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGR 124

Length = 291

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 9/48 (18%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----AGL 45
          K+HPD + K PG    A+ RF++I  AY VLSD   R+ YD    AG+
Sbjct: 30 KYHPDVN-KEPG----AEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72

Length = 374

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE 52
          ++HPD +      A +A+ +F++I  AY VL DE KR+ YD   +D  + +
Sbjct: 30 QYHPDTTD-----AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQ 75

Length = 372

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEED 53
          K+HPDR+      A +A   F +I EA  VLS+  KR+ YD   +D ++ ED
Sbjct: 29 KYHPDRNK-----APDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDRED 75

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD++  N     E++ +F++  EAY +L D  KR  YD
Sbjct: 30 IKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYD 67

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.98
PRK14296	372	chaperone protein DnaJ; Provisional	99.94
PRK14288	369	chaperone protein DnaJ; Provisional	99.94
PRK14286	372	chaperone protein DnaJ; Provisional	99.94
PRK14285	365	chaperone protein DnaJ; Provisional	99.94
PRK14287	371	chaperone protein DnaJ; Provisional	99.93
PRK14298	377	chaperone protein DnaJ; Provisional	99.93
PRK14276	380	chaperone protein DnaJ; Provisional	99.93
PRK14297	380	chaperone protein DnaJ; Provisional	99.93
PRK14279	392	chaperone protein DnaJ; Provisional	99.93
PRK14278	378	chaperone protein DnaJ; Provisional	99.93
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.93
PRK14301	373	chaperone protein DnaJ; Provisional	99.93
PRK14277	386	chaperone protein DnaJ; Provisional	99.92
PRK14280	376	chaperone protein DnaJ; Provisional	99.92
PRK14294	366	chaperone protein DnaJ; Provisional	99.92
PRK14282	369	chaperone protein DnaJ; Provisional	99.92
PRK14295	389	chaperone protein DnaJ; Provisional	99.92
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.92
PRK10767	371	chaperone protein DnaJ; Provisional	99.92
PRK14284	391	chaperone protein DnaJ; Provisional	99.91
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.91
PRK14291	382	chaperone protein DnaJ; Provisional	99.91
PRK14290	365	chaperone protein DnaJ; Provisional	99.9
PRK14283	378	chaperone protein DnaJ; Provisional	99.9
PRK14281	397	chaperone protein DnaJ; Provisional	99.9
PRK14292	371	chaperone protein DnaJ; Provisional	99.89
PRK14300	372	chaperone protein DnaJ; Provisional	99.89
PRK14289	386	chaperone protein DnaJ; Provisional	99.88
PRK14293	374	chaperone protein DnaJ; Provisional	99.88
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14299	291	chaperone protein DnaJ; Provisional	99.78
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.76
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.5
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.47
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.42
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.37
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.35
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.31
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.12
PHA03102	153	Small T antigen; Reviewed	99.08
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	98.98
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	98.95
PRK01356	166	hscB co-chaperone HscB; Provisional	98.93
PRK00294	173	hscB co-chaperone HscB; Provisional	98.91
PRK05014	171	hscB co-chaperone HscB; Provisional	98.91
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.88
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.82
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	98.81
PRK03578	176	hscB co-chaperone HscB; Provisional	98.78
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.75
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.74
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	98.62
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.61
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	98.54
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	98.53
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	98.41
PRK01773	173	hscB co-chaperone HscB; Provisional	98.4
PHA02624	647	large T antigen; Provisional	98.09
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	97.64
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.96
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.82
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	96.64
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.85
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	89.4
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	88.56
PF07709	14	SRR: Seven Residue Repeat; InterPro: IPR011714 Thi	83.51

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.7e-33  Score=218.17  Aligned_cols=111  Identities=30%  Similarity=0.386  Sum_probs=92.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-c--------ch-hHHHHHHHHhhhcc--
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-E--------DE-DFYGFVQEMVSMMN--   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-~--------~~-~~~~~f~~~f~~~~--   68 (122)
                      +|||||+|+.++    +|+++|++|++||||||||+||+.||+++...+.+ +        +. +|.|+|++||++..  
T Consensus        30 ~kyHPD~n~g~~----~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF~~~FgGg~~~  105 (371)
T COG0484          30 KKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGGGGG  105 (371)
T ss_pred             HHhCCCCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCCCCCHHHHHHHhhcCCCcc
Confidence            589999976544    89999999999999999999999999987765431 1        11 47899999995332  


Q ss_pred             -----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           69 -----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        69 -----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                           +++++.|+.+.|+|||+|||.|++++|.+++..    .|+.|.|+|+++++
T Consensus       106 ~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~----~C~~C~GsGak~gt  157 (371)
T COG0484         106 RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSV----TCSTCHGSGAKPGT  157 (371)
T ss_pred             cCCCCCcccCCceEEEEEeEhhhhccCceeeEecceee----ECCcCCCCCCCCCC
Confidence                 233566899999999999999999999997776    99999999999884

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=3.8e-28  Score=190.20  Aligned_cols=109  Identities=21%  Similarity=0.277  Sum_probs=84.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------------------cchhHHHH
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------------------EDEDFYGF   59 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------------------~~~~~~~~   59 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||+||+.||+++...+..                     +..+|.++
T Consensus        30 ~~~HPD~n~-~~----~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~d~  104 (372)
T PRK14296         30 KQYHPDLNK-SP----DAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNI  104 (372)
T ss_pred             HHHCcCCCC-Cc----hHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCccccccccccccccccchhh
Confidence            589999975 34    68999999999999999999999999976532110                     01235577


Q ss_pred             HHHHhhhcc----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           60 VQEMVSMMN----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        60 f~~~f~~~~----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      |++||++..    +..++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|+|+|+..+
T Consensus       105 f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~  163 (372)
T PRK14296        105 FSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLT----NCSKCFGSGAESN  163 (372)
T ss_pred             hhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeee----ccCCCCCCccCCC
Confidence            888886421    123456899999999999999999999997766    8888888887654

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=7.7e-28  Score=188.31  Aligned_cols=109  Identities=31%  Similarity=0.442  Sum_probs=82.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--c--------chhHHHHHHHHhhhcc--
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--E--------DEDFYGFVQEMVSMMN--   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--~--------~~~~~~~f~~~f~~~~--   68 (122)
                      ++||||+|+.++    +|+++|++|++||+|||||+||++||++|...+..  +        ...|.++|+++|++.+  
T Consensus        29 ~k~HPD~~~~~~----~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~~f~~~~~~F~~~fg~g~~~  104 (369)
T PRK14288         29 LKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFSDFFEDLGSFFEDAFGFGARG  104 (369)
T ss_pred             HHHCCCCCCCcc----HHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCccccccchhhHHHHHHhhcCCCCcc
Confidence            589999975433    68999999999999999999999999977643321  0        1123445666665321  


Q ss_pred             ----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295           69 ----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR  117 (122)
Q Consensus        69 ----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~  117 (122)
                          +.+++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|+|+|+..
T Consensus       105 ~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~  153 (369)
T PRK14288        105 SKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQS----VCESCDGTGAKD  153 (369)
T ss_pred             cCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeec----cCCCCCCcccCC
Confidence                113456889999999999999999999997765    788888888765

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=1.2e-27  Score=187.45  Aligned_cols=111  Identities=22%  Similarity=0.340  Sum_probs=86.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-------c--------chhHHHHHHHHhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-------E--------DEDFYGFVQEMVS   65 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-------~--------~~~~~~~f~~~f~   65 (122)
                      ++||||+|+.++    +|+++|++|++||+|||||+||+.||+++...+..       +        ..+|.++|..||+
T Consensus        30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~~~~d~f~~ffg  105 (372)
T PRK14286         30 IKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFG  105 (372)
T ss_pred             HHHCcCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCcccccccccchhhHHHHhhC
Confidence            589999976433    78999999999999999999999999976543210       0        1245688888887


Q ss_pred             hcc----------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           66 MMN----------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        66 ~~~----------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      +..          ...++.|+.++|.+||+|+|+|++++|.+++.+    .|..|+|+|+..+.
T Consensus       106 g~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~~  165 (372)
T PRK14286        106 GGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLE----SCVDCNGSGASKGS  165 (372)
T ss_pred             CCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccc----cCCCCcCCCcCCCC
Confidence            421          122456899999999999999999999997776    88999998876543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=4.4e-27  Score=183.81  Aligned_cols=111  Identities=27%  Similarity=0.366  Sum_probs=86.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------c-------chhHHHHHHHHh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------E-------DEDFYGFVQEMV   64 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------~-------~~~~~~~f~~~f   64 (122)
                      ++||||+|+.++    +|.++|++|++||+|||||+||+.||+++...+..         +       ..+|.++|++||
T Consensus        29 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~f~~~f  104 (365)
T PRK14285         29 IKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFF  104 (365)
T ss_pred             HHHCCCCCCCCH----HHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCccccccccccHHHHHHHhh
Confidence            589999976433    78899999999999999999999999976543210         1       123668888888


Q ss_pred             hhcc------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           65 SMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        65 ~~~~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      ++..      ...++.|+.++|.+||+|+|+|++++|.+++.+    .|..|+|+|+..+.
T Consensus       105 gg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~  161 (365)
T PRK14285        105 TGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNM----LCESCLGKKSEKGT  161 (365)
T ss_pred             cCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecc----cCCCCCCcccCCCC
Confidence            7421      123456899999999999999999999997776    88888888876543

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=4.5e-27  Score=184.10  Aligned_cols=109  Identities=25%  Similarity=0.338  Sum_probs=86.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c---chhHHHHHHHHhhhcc----
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E---DEDFYGFVQEMVSMMN----   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~---~~~~~~~f~~~f~~~~----   68 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||+||++||+++...+..     +   ..+|.++|+.||++.+    
T Consensus        30 ~~~HpD~~~-~~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~~f~~~~d~f~~~fgg~~~~~~  104 (371)
T PRK14287         30 RKYHPDVNK-AP----DAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRN  104 (371)
T ss_pred             HHHCcCCCC-Ch----hHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCccccchHHHHHhhhccccCCCC
Confidence            489999965 33    68899999999999999999999999977643221     1   1346688998887421    


Q ss_pred             --cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           69 --NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        69 --~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                        ...++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|+|+|+..+
T Consensus       105 ~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  152 (371)
T PRK14287        105 PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREE----TCGTCHGSGAKPG  152 (371)
T ss_pred             CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeec----cCCCCCCcccCCC
Confidence              122456899999999999999999999997776    8888888887654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=8.8e-27  Score=182.78  Aligned_cols=110  Identities=30%  Similarity=0.417  Sum_probs=87.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----------cchhHHHHHHHHhhhcc-
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----------EDEDFYGFVQEMVSMMN-   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----------~~~~~~~~f~~~f~~~~-   68 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||+||+.||+++......           +..+|.++|+.||++.. 
T Consensus        31 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~d~f~~~Fgg~~~  105 (377)
T PRK14298         31 MKYHPDKNK-EP----DAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGGR  105 (377)
T ss_pred             HHhCccccC-Ch----hHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCCcCcchhhhHhhhcCCCc
Confidence            589999965 33    68899999999999999999999999976543221           11246688999987421 


Q ss_pred             ----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           69 ----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        69 ----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                          ...++.|+.++|.+||+|+|+|++++|.+++.+    .|..|+|+|+..++
T Consensus       106 ~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~  156 (377)
T PRK14298        106 RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAE----RCSTCSGTGAKPGT  156 (377)
T ss_pred             cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeec----cCCCCCCCcccCCC
Confidence                123456899999999999999999999997776    89999998887654

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=1.2e-26  Score=182.09  Aligned_cols=110  Identities=26%  Similarity=0.353  Sum_probs=86.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc----------------cchhHHHHHHHHh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE----------------EDEDFYGFVQEMV   64 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~----------------~~~~~~~~f~~~f   64 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||+||+.||+++...+..                +..+|.++|+.||
T Consensus        30 ~~~HpD~~~-~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~f  104 (380)
T PRK14276         30 KKYHPDINK-EP----GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFF  104 (380)
T ss_pred             HHHCcCCCC-Cc----CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCccccccccchhhHHHHHh
Confidence            589999975 34    68899999999999999999999999976543210                0124668888888


Q ss_pred             hhcc------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           65 SMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        65 ~~~~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      ++..      ..+++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|+|+|+..+.
T Consensus       105 gg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~~  161 (380)
T PRK14276        105 GGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREA----TCHTCNGSGAKPGT  161 (380)
T ss_pred             CccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccc----cCCCCcCcccCCCC
Confidence            7421      122456899999999999999999999997776    89999999987643

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=1.3e-26  Score=181.91  Aligned_cols=110  Identities=27%  Similarity=0.376  Sum_probs=85.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-------c--------chhHHHHHHHHhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-------E--------DEDFYGFVQEMVS   65 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-------~--------~~~~~~~f~~~f~   65 (122)
                      ++||||+|+.++    +|+++|++|++||+||+||++|+.||+++...+..       +        ..+|.++|+.||+
T Consensus        30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg  105 (380)
T PRK14297         30 IKYHPDKNKGNK----EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFG  105 (380)
T ss_pred             HHHCcCCCCCcH----HHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCCcCcccccchhHHHHHHhc
Confidence            489999975333    78999999999999999999999999976543210       0        0135688888887


Q ss_pred             hc--c------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           66 MM--N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        66 ~~--~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      +.  +      ...++.|+.++|.|||+|+|+|++++|.+++.+    .|..|+|+|...+
T Consensus       106 g~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  162 (380)
T PRK14297        106 GGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNE----NCETCNGTGAKPG  162 (380)
T ss_pred             cCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeec----cCCCcccccccCC
Confidence            41  1      112455899999999999999999999997776    7888888887654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=1.6e-26  Score=182.17  Aligned_cols=110  Identities=24%  Similarity=0.319  Sum_probs=81.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC----CCc----------cc--------ch----
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD----PLE----------EE--------DE----   54 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~----~~~----------~~--------~~----   54 (122)
                      ++||||+|+.++    +|+++|++|++||+|||||+||++||+++..    .+.          .+        ..    
T Consensus        35 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~d~~~  110 (392)
T PRK14279         35 RELHPDANPGDP----AAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLND  110 (392)
T ss_pred             HHHCcCCCCCCh----HHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCCCCCCccccccccCcChhh
Confidence            589999976443    7899999999999999999999999996431    110          00        00    


Q ss_pred             -----------hHHHHHHHHhhhcc------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295           55 -----------DFYGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR  117 (122)
Q Consensus        55 -----------~~~~~f~~~f~~~~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~  117 (122)
                                 .|.++|+.||++..      ...++.|+.++|.|||+|+|+|++++|.+++.+    .|+.|+|+|+..
T Consensus       111 ~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~----~C~~C~G~G~~~  186 (392)
T PRK14279        111 LFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPA----PCTTCHGSGARP  186 (392)
T ss_pred             hhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccc----cCCCCccccccC
Confidence                       13355566665211      122456899999999999999999999997776    888888888765


Q ss_pred             C
Q 033295          118 G  118 (122)
Q Consensus       118 ~  118 (122)
                      +
T Consensus       187 ~  187 (392)
T PRK14279        187 G  187 (392)
T ss_pred             C
Confidence            4

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=2.2e-26  Score=180.64  Aligned_cols=110  Identities=23%  Similarity=0.282  Sum_probs=86.5

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------cchhHHHHHHHHhhhcc---
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------EDEDFYGFVQEMVSMMN---   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------~~~~~~~~f~~~f~~~~---   68 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||++|+.||+++......         +..+|.++|..||++.+   
T Consensus        29 ~~~hpD~~~-~~----~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~~~~d~f~~ffgg~g~~~  103 (378)
T PRK14278         29 RELHPDVNP-DE----EAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLGDVFEAFFGGGAASR  103 (378)
T ss_pred             HHHCCCCCC-cH----HHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcCchhHHHHHHhCCCCCCC
Confidence            589999965 33    78999999999999999999999999977532110         11236688889987432   


Q ss_pred             ----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           69 ----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        69 ----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                          ..+++.|+.+.|.+||+|+|+|++++|.+++.+    .|..|+|+|++.++
T Consensus       104 ~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~~  154 (378)
T PRK14278        104 GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAV----LCDRCHGKGTAGDS  154 (378)
T ss_pred             CCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeec----cCCCCcCccCCCCC
Confidence                122456899999999999999999999997776    89999999987653

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.8e-27  Score=179.11  Aligned_cols=108  Identities=28%  Similarity=0.443  Sum_probs=86.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcccc--hhHHHHHHHHhhhc--c--cccccC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEED--EDFYGFVQEMVSMM--N--NVKDEG   74 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~~--~~~~~~f~~~f~~~--~--~~~~~~   74 (122)
                      |+|||||   ||    .|.++|++|+.||||||||+||++||++|++....++  .++.. |..||++.  .  ...++.
T Consensus        30 ~k~HpDk---n~----~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~~-f~~~F~~g~~~~~~~~rg~  101 (337)
T KOG0712|consen   30 LKYHPDK---NP----DAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFGG-FSQFFGFGGNGGRGRQRGK  101 (337)
T ss_pred             HHhCCCC---Cc----cHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCcc-HHHhccCCCcCccccccCC
Confidence            5899999   55    4789999999999999999999999998876654321  12222 55555422  2  223467


Q ss_pred             CchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCCC
Q 033295           75 DSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS  120 (122)
Q Consensus        75 ~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~  120 (122)
                      |+.+++.++|+|+|.|.++.+.+++++    .|+.|.|.|.++++.
T Consensus       102 ~~~~~~~~~Le~~y~G~s~kl~l~~~~----iCs~C~GsGgksg~~  143 (337)
T KOG0712|consen  102 DVVHQLKVTLEELYMGKSKKLFLSRNF----ICSKCSGSGGKSGSA  143 (337)
T ss_pred             CceEEEEEEHHHhhcCCccceecccCc----cCCcCCCCCCCCCCC
Confidence            999999999999999999999998776    999999999998876

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.93  E-value=5.9e-26  Score=177.91  Aligned_cols=110  Identities=25%  Similarity=0.381  Sum_probs=84.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c-------chhHHHHHHHHhhhcc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E-------DEDFYGFVQEMVSMMN   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~-------~~~~~~~f~~~f~~~~   68 (122)
                      ++||||+|++++    +|+++|++|++||+||+||.+|+.||+++..+...     +       .+.|.++|+.||++..
T Consensus        30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~~~~~~~~~f~d~f~~~fg~g~  105 (373)
T PRK14301         30 LQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSG  105 (373)
T ss_pred             HHhCCCcCCCCh----HHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCcccccccccchHHHHHHHhhccC
Confidence            589999976433    78899999999999999999999999976543211     0       1235677888776211


Q ss_pred             -------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           69 -------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        69 -------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                             +..++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|+|+|+..+
T Consensus       106 ~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~  158 (373)
T PRK14301        106 GGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNV----TCDDCGGSGAAPG  158 (373)
T ss_pred             cccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecc----cCCCCCCcccCCC
Confidence                   112456899999999999999999999997776    8888888887654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=4.7e-26  Score=179.16  Aligned_cols=110  Identities=27%  Similarity=0.394  Sum_probs=82.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc-----------cc---------chhHHHHH
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE-----------EE---------DEDFYGFV   60 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~-----------~~---------~~~~~~~f   60 (122)
                      ++||||+|+.++    +|+++|++|++||+|||||+||+.||+++...+.           .+         ..+|.++|
T Consensus        31 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~f  106 (386)
T PRK14277         31 KKYHPDLNPGDK----EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIF  106 (386)
T ss_pred             HHHCCCcCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCCCccccCccccccchhHHH
Confidence            589999976433    6899999999999999999999999996643221           00         02244566


Q ss_pred             HHHhhhc---c------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           61 QEMVSMM---N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        61 ~~~f~~~---~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      .+||+.+   +      ...++.|+..+|.|||+|+|+|++++|.+++.+    .|..|+|+|...+
T Consensus       107 ~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~----~C~~C~G~G~~~~  169 (386)
T PRK14277        107 EDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFE----KCDVCKGSGAKPG  169 (386)
T ss_pred             HHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeec----cCCCCCCCCcCCC
Confidence            6666521   1      122456899999999999999999999997766    8999999887653

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=4e-26  Score=179.01  Aligned_cols=109  Identities=27%  Similarity=0.337  Sum_probs=85.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c-----ch---hHHHHHHHHhhhc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E-----DE---DFYGFVQEMVSMM   67 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~-----~~---~~~~~f~~~f~~~   67 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||++|+.||+++...+..     +     ..   +|.++|+.||++.
T Consensus        30 ~~~HpD~~~-~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~  104 (376)
T PRK14280         30 KKYHPDINK-EE----GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGG  104 (376)
T ss_pred             HHHCcCCCC-Cc----cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCccccccchhhHHHHhCCc
Confidence            489999975 44    68999999999999999999999999976543211     0     01   3568888888642


Q ss_pred             cc------ccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           68 NN------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        68 ~~------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      +.      .+++.|+.++|.|||+|+|+|++++|.+++.+    .|+.|+|+|+..+
T Consensus       105 ~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  157 (376)
T PRK14280        105 GRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEE----TCDTCHGSGAKPG  157 (376)
T ss_pred             cccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeec----cCCCCCCcccCCC
Confidence            21      22456899999999999999999999997776    8999999987654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=1e-25  Score=176.20  Aligned_cols=110  Identities=28%  Similarity=0.393  Sum_probs=84.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc----c-------chhHHHHHHHHhh-hcc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE----E-------DEDFYGFVQEMVS-MMN   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~----~-------~~~~~~~f~~~f~-~~~   68 (122)
                      ++||||+|+.++    +|+++|++|++||+||+||.+|+.||++|...+..    +       ...|.++|.+||+ +..
T Consensus        30 ~~~HPD~~~~~~----~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~~~~~~~~~~~d~f~~~fg~g~~  105 (366)
T PRK14294         30 MKYHPDRNPGDK----EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGG  105 (366)
T ss_pred             HHHCCCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcCccccchhhhhhhHHHhhccCCC
Confidence            589999976433    68899999999999999999999999977543211    0       1235677888887 211


Q ss_pred             -------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           69 -------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        69 -------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                             ...++.|+.++|.+||+|+|+|++++|.+++.+    .|..|.|+|...+
T Consensus       106 ~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  158 (366)
T PRK14294        106 RRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLE----TCEECHGSGCEPG  158 (366)
T ss_pred             cCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecc----cCCCCCCccccCC
Confidence                   112456899999999999999999999997766    7888888887654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=9.3e-26  Score=176.58  Aligned_cols=111  Identities=30%  Similarity=0.501  Sum_probs=83.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc-------ccc---h----hH-----HHHHH
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE-------EED---E----DF-----YGFVQ   61 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~-------~~~---~----~~-----~~~f~   61 (122)
                      ++||||+|+.+   ..+|+++|++|++||+|||||+||+.||+.+.....       .++   .    .|     .++|.
T Consensus        30 ~~~HPD~~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~f~  106 (369)
T PRK14282         30 KEWHPDRHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFD  106 (369)
T ss_pred             HHHCCCCCccc---hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCcccccccccccccccchhhh
Confidence            47999996432   246899999999999999999999999997654321       000   1    12     26677


Q ss_pred             HHhhhcc-------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           62 EMVSMMN-------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        62 ~~f~~~~-------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      .||++..       ...++.|+.++|.+||+|+|+|++++|.+++.+    .|..|+|+|+..+
T Consensus       107 ~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  166 (369)
T PRK14282        107 IFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYE----TCPHCGGTGVEPG  166 (369)
T ss_pred             HhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecc----cCCCCCccCCCCC
Confidence            7776421       112456899999999999999999999997776    8888888887654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=1.3e-25  Score=176.84  Aligned_cols=111  Identities=26%  Similarity=0.382  Sum_probs=82.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccC----CCCCCCcc----c--c-----------------
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA----GLYDPLEE----E--D-----------------   53 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~----~~~~~~~~----~--~-----------------   53 (122)
                      ++||||+|+.++    +|+++|++|++||+||+||++|+.||+    ++...+..    +  .                 
T Consensus        35 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~  110 (389)
T PRK14295         35 REYHPDANKGDA----KAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGG  110 (389)
T ss_pred             HHHCCCcCCCch----hHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCCCCCCcccccccccccccc
Confidence            589999976433    689999999999999999999999998    55432210    0  0                 


Q ss_pred             ------hhHHHHHHHHhhhcc---cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           54 ------EDFYGFVQEMVSMMN---NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        54 ------~~~~~~f~~~f~~~~---~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                            ..|.++|+.||++..   ..+++.|+.++|.|||+|+|+|++++|.+++.+    .|..|+|+|+..++
T Consensus       111 ~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~~  181 (389)
T PRK14295        111 GGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQA----PCPACSGTGAKNGT  181 (389)
T ss_pred             cccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccc----cCCCCcccccCCCC
Confidence                  013345555554321   123456899999999999999999999997776    88888888887653

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.92  E-value=1.8e-25  Score=177.38  Aligned_cols=105  Identities=23%  Similarity=0.337  Sum_probs=83.5

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--cchhHHHHHHHHhhhcc---cccccCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--EDEDFYGFVQEMVSMMN---NVKDEGD   75 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--~~~~~~~~f~~~f~~~~---~~~~~~~   75 (122)
                      |+||||+|   ++     .++|++|++||+|||||+||++||+++...+..  +..+|.++|..||++..   ..+++.|
T Consensus        54 ~k~HPDk~---~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d~~d~f~~~Fggg~~~~~~~rg~d  125 (421)
T PTZ00037         54 IKHHPDKG---GD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADASDLFDLIFGGGRKPGGKKRGED  125 (421)
T ss_pred             HHHCCCCC---ch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcchhhhHHHhhccccccccccCCCC
Confidence            58999995   41     379999999999999999999999977654321  22356788888887532   1234568


Q ss_pred             chhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295           76 SFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR  117 (122)
Q Consensus        76 ~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~  117 (122)
                      +.++|.+||+|+|+|++++|.+++.+    .|..|+|+|+..
T Consensus       126 i~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~  163 (421)
T PTZ00037        126 IVSHLKVTLEQIYNGAMRKLAINKDV----ICANCEGHGGPK  163 (421)
T ss_pred             EEEEeeeeHHHHhCCCceEEEeeccc----cccccCCCCCCC
Confidence            99999999999999999999997776    888888888754

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=2.2e-25  Score=174.48  Aligned_cols=110  Identities=29%  Similarity=0.420  Sum_probs=83.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c------c-hhHHHHHHHHhhhc-
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E------D-EDFYGFVQEMVSMM-   67 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~------~-~~~~~~f~~~f~~~-   67 (122)
                      ++||||+|+.++    +|+++|++|++||+||+||.+|+.||+.+......     +      . +.|.++|+.||++. 
T Consensus        30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~fgg~~  105 (371)
T PRK10767         30 MKYHPDRNPGDK----EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGR  105 (371)
T ss_pred             HHHCCCCCCCcH----HHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCccccccchhhhhhhhccCCc
Confidence            489999976433    68899999999999999999999999976543221     0      0 12556777777531 


Q ss_pred             ----ccccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           68 ----NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        68 ----~~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                          ....++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|.|+|...+
T Consensus       106 ~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~----~C~~C~G~G~~~~  156 (371)
T PRK10767        106 GGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLV----TCDTCHGSGAKPG  156 (371)
T ss_pred             cccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecc----cCCCCCCcccCCC
Confidence                1123456899999999999999999999997765    7888888887654

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.91  E-value=2.2e-25  Score=175.62  Aligned_cols=111  Identities=23%  Similarity=0.335  Sum_probs=82.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc--------ccch------------------
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE--------EEDE------------------   54 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~--------~~~~------------------   54 (122)
                      ++||||+|++++    .|+++|++|++||+||+||+||+.||+++...+.        .+..                  
T Consensus        27 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~~~~~~~~~~~~~f~~~~~  102 (391)
T PRK14284         27 VKYHPDKNPGDA----EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFG  102 (391)
T ss_pred             HHHCcCCCCCch----HHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcCcccchhhhcccccccccc
Confidence            479999976433    7899999999999999999999999997654220        0000                  


Q ss_pred             hHHHHHHHHhhhcc----------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           55 DFYGFVQEMVSMMN----------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        55 ~~~~~f~~~f~~~~----------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      .+.++|+.||++.+          ...++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|+|+|+..++
T Consensus       103 ~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~  173 (391)
T PRK14284        103 GGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYK----SCDACSGSGANSSQ  173 (391)
T ss_pred             ccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeec----cCCCCcccccCCCC
Confidence            01356677775311          112456899999999999999999999997765    88888888877643

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.91  E-value=9.3e-25  Score=170.03  Aligned_cols=109  Identities=31%  Similarity=0.401  Sum_probs=84.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------------cchhHHHHHHHHhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------------EDEDFYGFVQEMVS   65 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------------~~~~~~~~f~~~f~   65 (122)
                      ++||||+|+ ++    +|+++|++|++||+||+|+.+|+.||..+......               +...|.++|..||+
T Consensus        26 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg  100 (354)
T TIGR02349        26 KKYHPDRNK-DK----EAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFG  100 (354)
T ss_pred             HHHCCCCCC-Cc----cHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCccccCcCchhhhHHHHhc
Confidence            579999975 33    68899999999999999999999999966543211               01245678888887


Q ss_pred             hcc--------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           66 MMN--------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        66 ~~~--------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      +..        ...++.|+.++|.+||+|+|+|++++|.+++.+    .|..|+|+|+..+
T Consensus       101 ~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  157 (354)
T TIGR02349       101 GGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKE----SCETCHGTGAKPG  157 (354)
T ss_pred             cCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCC----cCCCCCCCCCCCC
Confidence            421        122455899999999999999999999997776    8999999987654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.91  E-value=1e-24  Score=171.43  Aligned_cols=110  Identities=24%  Similarity=0.393  Sum_probs=81.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--------------cchhHHHHHHHHhhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--------------EDEDFYGFVQEMVSM   66 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--------------~~~~~~~~f~~~f~~   66 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||.+|+.||+++......              ...++.++|.+||+.
T Consensus        29 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~f~~  103 (382)
T PRK14291         29 RKYHPDFNK-NP----EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDI  103 (382)
T ss_pred             HHHCCCCCC-Cc----cHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccccccCCCHHHHHHHHHHh
Confidence            589999976 34    68899999999999999999999999966532210              012345666666311


Q ss_pred             ------ccc-------------ccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           67 ------MNN-------------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        67 ------~~~-------------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                            +..             ..++.|+.+.|.+||+|+|+|++++|.+++.+    .|..|+|+|+..++
T Consensus       104 fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~  171 (382)
T PRK14291        104 FGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYV----PCEACGGTGYDPGS  171 (382)
T ss_pred             ccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeec----cCCCCccccCCCCC
Confidence                  110             11345888999999999999999999997766    88888888876543

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=2e-24  Score=168.86  Aligned_cols=111  Identities=27%  Similarity=0.394  Sum_probs=84.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---c--------chhHHHHHHHHhhhc-c
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---E--------DEDFYGFVQEMVSMM-N   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---~--------~~~~~~~f~~~f~~~-~   68 (122)
                      ++||||+|+   ++.++|.++|++|++||+|||||.+|++||.++..++..   +        ..+|.++|..||++. .
T Consensus        29 ~~~HPD~~~---~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~  105 (365)
T PRK14290         29 KKWHPDLHP---GNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNFTHFSDINDIFNQIFGGNFG  105 (365)
T ss_pred             HHHCcCCCC---CchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCccccccccccchhHHHHHHhcCccc
Confidence            589999964   333479999999999999999999999999977543321   0        124567888887641 0


Q ss_pred             ----------ccc--ccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           69 ----------NVK--DEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        69 ----------~~~--~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                                ...  ++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|.|+|+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~----~C~~C~G~g~~~~  163 (365)
T PRK14290        106 SDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNA----MCPDCSGTGAKNG  163 (365)
T ss_pred             cccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecc----cCCCCccccCCCC
Confidence                      111  145899999999999999999999997765    7888888887543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=7.4e-25  Score=171.95  Aligned_cols=109  Identities=25%  Similarity=0.373  Sum_probs=79.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc----------c-c---h----hHHHHHHH
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE----------E-D---E----DFYGFVQE   62 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~----------~-~---~----~~~~~f~~   62 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||.+|++||+.+..++..          . .   .    +|.++|..
T Consensus        31 ~~~HPD~~~-~~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  105 (378)
T PRK14283         31 RKYHPDVSE-EE----GAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDM  105 (378)
T ss_pred             HHHCcCCCC-Cc----cHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccccccCccccccccccchhhhccc
Confidence            589999965 33    78999999999999999999999999976533210          0 0   0    12233333


Q ss_pred             H-hhhcc--cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           63 M-VSMMN--NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        63 ~-f~~~~--~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      | |++..  ...++.|+.++|.+||+|+|+|++++|.+++.+    .|+.|.|+|...+
T Consensus       106 ~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  160 (378)
T PRK14283        106 FGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTK----KCPVCNGSRAEPG  160 (378)
T ss_pred             cccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeec----cCCCCCccccCCC
Confidence            3 33211  123456899999999999999999999997765    8999999887654

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=1.5e-24  Score=171.21  Aligned_cols=110  Identities=25%  Similarity=0.374  Sum_probs=81.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc------------cchhHHHHH---HHHhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------------EDEDFYGFV---QEMVS   65 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~------------~~~~~~~~f---~~~f~   65 (122)
                      ++||||+|+.++    +|+++|++|++||+||+||.+|+.||+.+...+..            ...+|.++|   .+||+
T Consensus        29 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~d~f~~f~~~Fg  104 (397)
T PRK14281         29 LKYHPDKNPDNK----EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFG  104 (397)
T ss_pred             HHHCCCcCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCCcCCCCHHHHHHHHHHHhC
Confidence            589999976333    68899999999999999999999999976532210            111344554   36665


Q ss_pred             hc-----------------c-c-c-----cccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           66 MM-----------------N-N-V-----KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        66 ~~-----------------~-~-~-----~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      +.                 . . .     .++.|+.+.|.|||+|+|+|++++|.+++.+    .|..|+|+|+..+
T Consensus       105 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~  177 (397)
T PRK14281        105 GGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQV----PCKECNGTGSKTG  177 (397)
T ss_pred             CCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeee----cCCCCCCcccCCC
Confidence            31                 0 0 0     1345889999999999999999999997765    8999998887654

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=9.3e-24  Score=165.38  Aligned_cols=109  Identities=25%  Similarity=0.324  Sum_probs=84.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--c-------chhHHHHHHHHhhhcc---
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--E-------DEDFYGFVQEMVSMMN---   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--~-------~~~~~~~f~~~f~~~~---   68 (122)
                      ++||||+|+ +    .+|.++|++|++||+|||||.+|+.||++|......  +       ..++.++|..||++..   
T Consensus        28 ~~~hpD~~~-~----~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~d~~d~f~~~fg~~~~~~  102 (371)
T PRK14292         28 LKYHPDRNK-E----KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGG  102 (371)
T ss_pred             HHHCCCCCC-C----hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCCChHHHHHHhhCCCCcCC
Confidence            479999965 3    368999999999999999999999999977543110  0       0123478888887421   


Q ss_pred             -----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           69 -----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        69 -----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                           ...++.++...+.+||+|+|+|+++++.+++.+    .|+.|+|+|...+
T Consensus       103 ~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~----~C~~C~G~G~~~~  153 (371)
T PRK14292        103 GRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLT----ECEHCHGSRTEPG  153 (371)
T ss_pred             CCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeee----cCCCCcccccCCC
Confidence                 122455899999999999999999999997765    8999999887654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=9.8e-24  Score=165.34  Aligned_cols=109  Identities=25%  Similarity=0.420  Sum_probs=79.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----------c-chh----HHHHHHHHh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----------E-DED----FYGFVQEMV   64 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----------~-~~~----~~~~f~~~f   64 (122)
                      ++||||+|+ ++    .|+++|++|++||+||+|+.+|+.||+++...+..           + ..+    |.++|+.+|
T Consensus        29 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~~~~~~~~~f~~~f~~~~  103 (372)
T PRK14300         29 KQYHPDTTD-AK----DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFM  103 (372)
T ss_pred             HHHCcCCCC-Cc----CHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCccccchhhhHHHHHHhhc
Confidence            589999975 33    58889999999999999999999999976532210           0 012    334444444


Q ss_pred             hhccc--c----cccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           65 SMMNN--V----KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        65 ~~~~~--~----~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      ++...  .    .++.++.+.|.+||+|+|+|++++|.+++.+    .|..|.|+|+..+
T Consensus       104 gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~----~C~~C~G~g~~~~  159 (372)
T PRK14300        104 GGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEV----KCDTCHGSGSEKG  159 (372)
T ss_pred             CCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeecc----ccCCCCCcccCCC
Confidence            32111  1    2445899999999999999999999997776    8888888887544

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.7e-23  Score=164.65  Aligned_cols=109  Identities=23%  Similarity=0.316  Sum_probs=78.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c----chhHHHHH---HHHhhh--
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E----DEDFYGFV---QEMVSM--   66 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~----~~~~~~~f---~~~f~~--   66 (122)
                      ++||||+|++++    +|+++|++|++||+||+||++|+.||+++......     +    ..++.++|   .++|+.  
T Consensus        31 ~~~HpD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~fg~~~  106 (386)
T PRK14289         31 IQYHPDKNPGDK----EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHG  106 (386)
T ss_pred             HHHCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCCcChhhhhHHhhhhhcccc
Confidence            479999976433    69999999999999999999999999976533210     0    11223333   222331  


Q ss_pred             --c------c------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295           67 --M------N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR  117 (122)
Q Consensus        67 --~------~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~  117 (122)
                        +      .      ...++.++.+.|.|||+|+|+|++++|.+++.+    .|..|.|+|+..
T Consensus       107 gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~  167 (386)
T PRK14289        107 GGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYV----PCSHCHGTGAEG  167 (386)
T ss_pred             cCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeec----ccCCCCCCCCCC
Confidence              1      0      112345889999999999999999999997765    888888888764

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=2.6e-23  Score=163.04  Aligned_cols=109  Identities=28%  Similarity=0.376  Sum_probs=83.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--------cchhHHHHHHHHhhhc---c-
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--------EDEDFYGFVQEMVSMM---N-   68 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--------~~~~~~~~f~~~f~~~---~-   68 (122)
                      ++||||+|+ ++    .|+++|++|++||+||+||.+|+.||.++......        ...+|.++|..||+++   . 
T Consensus        29 ~~~HPD~~~-~~----~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~  103 (374)
T PRK14293         29 RKYHPDVNK-EP----GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMGGFADIFETFFSGFGGAGG  103 (374)
T ss_pred             HHHCCCCCC-Cc----CHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcccccchHHHHHHHhcccCCCCC
Confidence            479999965 33    58899999999999999999999999976543211        0123567788887531   1 


Q ss_pred             --------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295           69 --------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        69 --------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                              ...++.++..+|.+||+|+|+|++++|.+++.+    .|..|.|+|...+
T Consensus       104 ~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~  157 (374)
T PRK14293        104 QGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLE----TCETCRGSGAKPG  157 (374)
T ss_pred             CCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccc----cCCCCCCcCCCCC
Confidence                    012345788999999999999999999997765    8888888887653

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.5e-20  Score=141.79  Aligned_cols=111  Identities=31%  Similarity=0.430  Sum_probs=87.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcccchhHHHHHHHHhhh-cccccccCCchhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSM-MNNVKDEGDSFED   79 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~~~~~~~~f~~~f~~-~~~~~~~~~~~~~   79 (122)
                      ++||||.|. ++    +|.++|++|.+|||||+|++||+.||..+............++|..+|++ +.+.-...+..+.
T Consensus        69 KkyHPD~n~-~~----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d  143 (288)
T KOG0715|consen   69 KKYHPDVNK-DK----EASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNPFDVFLEFFGGKMNKRVPDKDQYYD  143 (288)
T ss_pred             HhhCCCCCC-Cc----chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCccchHHHhhcccccccccCcccccc
Confidence            479999976 33    79999999999999999999999999977654222222345667777766 4444445577778


Q ss_pred             hhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCCC
Q 033295           80 LQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS  120 (122)
Q Consensus        80 l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~  120 (122)
                      +.++|.++..|+.+.++++...    .|.+|.|.|...+..
T Consensus       144 ~~~~f~~A~~g~~~~~~~~~~~----~~~t~~~~~~~~~~~  180 (288)
T KOG0715|consen  144 LSLDFKEAVRGSKKRISFNVLS----DCETCFGSGAEEGAK  180 (288)
T ss_pred             cccCHHHHhhccccceEEEeec----ccccccCcCcccccc
Confidence            9999999999999999997665    999999999776653

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.5e-20  Score=142.38  Aligned_cols=89  Identities=28%  Similarity=0.464  Sum_probs=64.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCccc----chhH--HHHHHHHhhhc-----cc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE----DEDF--YGFVQEMVSMM-----NN   69 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~----~~~~--~~~f~~~f~~~-----~~   69 (122)
                      ||||||||++||    .|.+.|++|+.||||||||+||+.||..|+.+....    ..+.  .++|+.+|+-+     +.
T Consensus        42 Lk~HPDkNpddp----~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~~~~~f~~~f~dfg~~~~g~  117 (336)
T KOG0713|consen   42 LKYHPDKNPDDP----NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGGGNDIFSAFFGDFGVTVGGN  117 (336)
T ss_pred             HHhCCCCCCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCcccchHHHhhcccccccCCC
Confidence            689999998887    899999999999999999999999999876554421    1111  24455554422     11


Q ss_pred             -----ccccCCchhhhhhHHHHHhcCcee
Q 033295           70 -----VKDEGDSFEDLQRMFVEMVDGMSF   93 (122)
Q Consensus        70 -----~~~~~~~~~~l~~~l~e~~~G~~~   93 (122)
                           ...+.++...+..+++++|.|...
T Consensus       118 ~~~e~~~~g~~V~~~~e~~~~h~y~~~~~  146 (336)
T KOG0713|consen  118 PLEEALPKGSDVSSDLEKQLEHFYMGNFV  146 (336)
T ss_pred             cccCCCCCCceEEeehhhchhhhhcccHH
Confidence                 233456778888889988866544

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1e-19  Score=138.65  Aligned_cols=94  Identities=29%  Similarity=0.390  Sum_probs=71.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc-------------cc-----chhHHHHHHH
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE-------------EE-----DEDFYGFVQE   62 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~-------------~~-----~~~~~~~f~~   62 (122)
                      ++||||+|+ ++    +|+++|++|++||+|||||++|+.||+.+.....             .+     ..+|.++|..
T Consensus        30 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~  104 (291)
T PRK14299         30 RKYHPDVNK-SP----GAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQ  104 (291)
T ss_pred             HHHCcCCCC-Ch----hHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCCCCccccCcCCHHHHHHH
Confidence            489999975 44    6899999999999999999999999986543100             00     1246688888


Q ss_pred             Hhhhcc---c-----------ccccCCchhhhhhHHHHHhcCceeeEeecC
Q 033295           63 MVSMMN---N-----------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDP   99 (122)
Q Consensus        63 ~f~~~~---~-----------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~   99 (122)
                      ||++.+   .           .+++.|+..++.|||+|+|.|+++.++++.
T Consensus       105 ~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~g  155 (291)
T PRK14299        105 LFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAG  155 (291)
T ss_pred             HhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeCC
Confidence            887421   1           123458899999999999999999988754

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.76  E-value=3.6e-19  Score=136.41  Aligned_cols=96  Identities=26%  Similarity=0.427  Sum_probs=72.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC----CCc------c----cchhHHHHHHHHhhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD----PLE------E----EDEDFYGFVQEMVSM   66 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~----~~~------~----~~~~~~~~f~~~f~~   66 (122)
                      ++||||+|+ ++    +|+++|++|++||+||+||.+|+.||..+..    .+.      .    ...+|.++|+.||++
T Consensus        30 ~k~HPD~~~-~~----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~  104 (306)
T PRK10266         30 RKYHPDVSK-EP----DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQ  104 (306)
T ss_pred             HHHCcCCCC-Cc----cHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCCCCCCCCHHHHHHHHhCC
Confidence            589999965 33    6899999999999999999999999985421    110      0    112467888888874


Q ss_pred             ccc------ccccCCchhhhhhHHHHHhcCceeeEeecCCC
Q 033295           67 MNN------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTD  101 (122)
Q Consensus        67 ~~~------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~  101 (122)
                      .++      .+++.|+..++.|||+|++.|+.+++.+++.+
T Consensus       105 ~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~  145 (306)
T PRK10266        105 HARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV  145 (306)
T ss_pred             CCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc
Confidence            221      12345899999999999999999999996653

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.1e-14  Score=110.82  Aligned_cols=44  Identities=41%  Similarity=0.738  Sum_probs=39.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   48 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~   48 (122)
                      |+||||||++||    .|.++|+.|++||+||+|+++|+.||..+...
T Consensus        31 L~~HPDKNp~dP----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen   31 LQYHPDKNPGDP----QAAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             HhcCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            589999988888    59999999999999999999999999966543

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.1e-14  Score=115.30  Aligned_cols=42  Identities=48%  Similarity=0.779  Sum_probs=37.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   45 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~   45 (122)
                      |+|||||   ||...++|+++|+.|+.||+|||||+.|++||...
T Consensus        34 Lq~HPDk---npd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr   75 (508)
T KOG0717|consen   34 LQYHPDK---NPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR   75 (508)
T ss_pred             HhhCCCC---CCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence            7899999   45555799999999999999999999999999853

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.3e-13  Score=101.28  Aligned_cols=63  Identities=37%  Similarity=0.548  Sum_probs=48.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC--cccchhHHHHHHHHhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL--EEEDEDFYGFVQEMVS   65 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~--~~~~~~~~~~f~~~f~   65 (122)
                      |+||||+|  +.+++.+|+++|+.|+.||+||||.++|+.||..|.-..  +.-..++-+||..+|-
T Consensus        40 l~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~d~~~~~~e~~~~iyk  104 (264)
T KOG0719|consen   40 LRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESGDIDEDWLEFWRAIYK  104 (264)
T ss_pred             HHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccchhhhHHHHHHHHHHh
Confidence            68999997  345678999999999999999999999999999765432  2223456666666654

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2e-13  Score=108.33  Aligned_cols=48  Identities=42%  Similarity=0.649  Sum_probs=43.9

Q ss_pred             ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295            2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   50 (122)
Q Consensus         2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~   50 (122)
                      -|||||.. +|+.|+.|++.|+.|.+||||||||++|++||..|..++.
T Consensus        36 lfHPDkh~-dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen   36 LFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hcCCcccC-ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            48999987 7888999999999999999999999999999998876654

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.3e-13  Score=101.69  Aligned_cols=42  Identities=45%  Similarity=0.808  Sum_probs=38.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      |+||||++++||    ++.++|++||+||+|||||.||..||..|.
T Consensus        57 ~k~HPD~~gd~P----~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   57 LKYHPDKNGDNP----EATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             HHhCCCcCCCCc----hhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            479999988778    799999999999999999999999999654

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.31  E-value=1.1e-12  Score=111.61  Aligned_cols=45  Identities=31%  Similarity=0.582  Sum_probs=38.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   50 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~   50 (122)
                      ++||||+|+ ++    .|.++|++|++||+|||||.+|+.||..|..+..
T Consensus       599 lkyHPDKN~-~~----~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        599 ENYYPPKRS-GN----EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             HHhCCCCCC-Cc----hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            589999965 22    5788999999999999999999999998876543

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.12  E-value=2.1e-11  Score=72.97  Aligned_cols=39  Identities=41%  Similarity=0.808  Sum_probs=33.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhccc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD   42 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD   42 (122)
                      ++||||++..++   +.+.+.|+.|++||++|+||.+|+.||
T Consensus        26 ~~~HPD~~~~~~---~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen   26 KQYHPDKNSGDE---AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHTSTTTGTSTH---HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             hccccccchhhh---hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            369999976332   468999999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PHA03102 Small T antigen; Reviewed

Probab=99.08  E-value=7.3e-11  Score=82.41  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=43.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcccchhHHHHHHHHhhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSM   66 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~~~~~~~~f~~~f~~   66 (122)
                      ++||||++.        ..++|++|++||+||+|+.+|..||..+.+..........++|..+||+
T Consensus        33 ~~~HPDkgg--------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~f~~~fg~   90 (153)
T PHA03102         33 LEFHPDKGG--------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDVPSGYVGATFGD   90 (153)
T ss_pred             HHHCcCCCc--------hhHHHHHHHHHHHHHhhHHHhccccccCCcccccccccHHHHhhhhcCC
Confidence            479999953        2369999999999999999999999988765433333355666666653

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=98.98  E-value=3.1e-10  Score=95.06  Aligned_cols=44  Identities=43%  Similarity=0.627  Sum_probs=37.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++||||++. ++    .|..+|++|++||+||+||.+|+.||..+..+.
T Consensus        28 KKyHPDKn~-~~----eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835        28 KKYHPDRNK-AP----DAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             HHHCcCCCC-Ch----hHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            479999975 33    688999999999999999999999999776543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.2e-10  Score=80.86  Aligned_cols=41  Identities=44%  Similarity=0.818  Sum_probs=35.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      ++||||+|+.++.   .|.++|++|++||+||+|+.+|+.||..
T Consensus        32 ~~~HPD~~~~~~~---~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214          32 LKYHPDRNPGDPK---VAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             HHhCCCCCCCchh---HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            5799999775441   4899999999999999999999999973

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=98.93  E-value=2.5e-10  Score=80.81  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=34.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      ++||||+++ ++.++..+...|..|++||+||+||.+|+.|+..
T Consensus        30 ~~~HPDk~~-~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356         30 VKYHPDKAK-TLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             HHHCcCCCC-CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            479999976 3333445666799999999999999999999863

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=98.91  E-value=4.8e-10  Score=79.86  Aligned_cols=43  Identities=33%  Similarity=0.388  Sum_probs=36.2

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDA   43 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~   43 (122)
                      ++||||++.+.++ ++..|.+.|..|++||+||+||.+|+.|+.
T Consensus        32 ~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294         32 REVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             HHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            3799999875543 344578889999999999999999999996

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=98.91  E-value=5.5e-10  Score=79.43  Aligned_cols=44  Identities=27%  Similarity=0.308  Sum_probs=35.8

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      ++||||+..+.++ ++..|.+.|..|++||+||+||.+|+.|+..
T Consensus        29 ~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014         29 RQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             HHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            3799999774432 3345778999999999999999999999863

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.88  E-value=9e-10  Score=77.34  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=36.0

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      ++||||+....++ ++..|...|+.|++||+||+||.+|+.|+..
T Consensus        17 ~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714        17 RQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             HHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            3799999764332 3446888999999999999999999999974

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.82  E-value=1.3e-09  Score=84.87  Aligned_cols=45  Identities=38%  Similarity=0.567  Sum_probs=40.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||-.. +.+++..|+++|-.|..|-||||||+||+.||.+..
T Consensus       420 qkWHPDNFq-dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD  464 (504)
T KOG0624|consen  420 QKWHPDNFQ-DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED  464 (504)
T ss_pred             HhcCCcccc-CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence            489999876 666778999999999999999999999999999753

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.6e-09  Score=85.00  Aligned_cols=41  Identities=37%  Similarity=0.579  Sum_probs=36.6

Q ss_pred             ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      -.|||||. +|    .|.+.|+.|+.||+||+|++||.+||.....
T Consensus       262 LVhPDKn~-~~----~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  262 LVHPDKNM-IP----RAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             EeCCCccC-Ch----hHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            36999997 65    8999999999999999999999999986653

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=98.78  E-value=2.4e-09  Score=76.43  Aligned_cols=43  Identities=33%  Similarity=0.299  Sum_probs=34.1

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDA   43 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~   43 (122)
                      ++||||++...++ ++..+.+.+..|++||+||+||.+|+.|..
T Consensus        34 ~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578         34 AQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             HHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3799999875442 223355668999999999999999999995

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.2e-09  Score=78.34  Aligned_cols=43  Identities=42%  Similarity=0.694  Sum_probs=36.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      |+||||+|+.+   +..|..+|++|++||+||+|+.+|..||+.+.
T Consensus        29 ~~~hpdk~~~~---~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen   29 LKYHPDKNPSP---KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             HhhCCCCCCCc---hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            58999996533   24566699999999999999999999999774

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.6e-08  Score=76.39  Aligned_cols=67  Identities=27%  Similarity=0.406  Sum_probs=46.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC-----CcccchhHHHHHHHHhhhccc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP-----LEEEDEDFYGFVQEMVSMMNN   69 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~-----~~~~~~~~~~~f~~~f~~~~~   69 (122)
                      ++||||+... .+. ....+-|+.|+.||+||+|+.+|..||..-.+.     .-.....|.+.+...|....+
T Consensus        72 ~kyHPDk~aa-~g~-~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advppp~~~t~~~Ffe~w~pvFe~ear  143 (379)
T COG5269          72 YKYHPDKTAA-GGN-KGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVPPPRIYTPDEFFEVWEPVFEREAR  143 (379)
T ss_pred             HHhCccchhc-cCC-CCcHHHHHHHHHHHHHhccHHHHhhccccccccCCCCccCCCchhHHHHHHHHHHhhhh
Confidence            4799999741 111 146688999999999999999999999854321     122345677777777764433

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=98.62  E-value=2.6e-08  Score=58.47  Aligned_cols=34  Identities=47%  Similarity=0.842  Sum_probs=27.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccch
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK   37 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~k   37 (122)
                      ++||||++...   ...+.+.|++|++||++|+||.+
T Consensus        27 ~~~HPD~~~~~---~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271       27 LKYHPDKNPGD---KEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             HHHCcCCCCCc---hHHHHHHHHHHHHHHHHHcCCCC
Confidence            47999997532   25789999999999999999853

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.2e-08  Score=79.28  Aligned_cols=42  Identities=40%  Similarity=0.742  Sum_probs=37.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   45 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~   45 (122)
                      |.||||+|..+   +.+|+.+|++|.+||.||+||.+|..||.+.
T Consensus       399 L~~Hpd~~ags---q~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  399 LVHHPDKNAGS---QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             HHhCCCcCcch---hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            46999997755   3589999999999999999999999999964

>cd06257 DnaJ DnaJ domain or J-domain

Probab=98.54  E-value=4.4e-08  Score=56.43  Aligned_cols=30  Identities=50%  Similarity=0.927  Sum_probs=25.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD   34 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd   34 (122)
                      ++||||++...    +.+.+.|++|++||+||+|
T Consensus        26 ~~~HPD~~~~~----~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257          26 LKYHPDKNPDD----PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             HHHCcCCCCCc----HHHHHHHHHHHHHHHHhcC
Confidence            47999996521    3789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=5.6e-08  Score=70.99  Aligned_cols=45  Identities=24%  Similarity=0.392  Sum_probs=38.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++|||||++ ++   ++.++.|..|+.||+.|+|+..|..|-.+|....
T Consensus       125 ik~HPDK~~-~~---~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen  125 IKYHPDKQP-PE---EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             hhhCCCcCC-Cc---chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            589999987 44   3778899999999999999999999999876543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=6.7e-08  Score=72.37  Aligned_cols=40  Identities=43%  Similarity=0.759  Sum_probs=35.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   45 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~   45 (122)
                      ++||||+++ +|    ++.+.|..|..||++|.|.+.|..||-..
T Consensus        59 RrhHPDr~r-~~----e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   59 RRHHPDRNR-DP----ESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             HHhCCcccC-Cc----hhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            589999987 55    57799999999999999999999999644

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.40  E-value=1.2e-07  Score=67.58  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             ccCCCCCCCCC-CChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295            2 KWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDA   43 (122)
Q Consensus         2 k~HPDkn~~~~-~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~   43 (122)
                      ++|||+....+ .++..|.+.-..||+||.||+||-+|+.|=.
T Consensus        31 ~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773         31 SLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             HhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            68999986543 2445677788999999999999999999865

>PHA02624 large T antigen; Provisional

Probab=98.09  E-value=2.4e-06  Score=70.98  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=29.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   41 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~Y   41 (122)
                      ++||||++   .     +.++|++|++||++|+|+.+|..|
T Consensus        39 kkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         39 KEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            57999994   2     347999999999999999999999

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=97.64  E-value=3.3e-05  Score=62.14  Aligned_cols=49  Identities=27%  Similarity=0.439  Sum_probs=41.0

Q ss_pred             CccCCCCCCC-CCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAK-NPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~-~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      +||||||.++ -++.+.+.+++..+|+.||+.|+|...|+.|=.+|....
T Consensus       124 ~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407         124 MKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             eecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            4899999764 245677999999999999999999999999988765443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00043  Score=60.99  Aligned_cols=27  Identities=44%  Similarity=0.928  Sum_probs=24.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD   34 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd   34 (122)
                      .||||||   ||    +..++|..+++|||.|+.
T Consensus      1311 ~kYHPDK---NP----EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1311 AKYHPDK---NP----EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             HHhCCCC---Cc----hHHHHHHHHHHHHHHHHH
Confidence            4899999   77    678999999999999983

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00078  Score=47.17  Aligned_cols=41  Identities=29%  Similarity=0.366  Sum_probs=31.9

Q ss_pred             ccCCCCCCCCCC--ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295            2 KWHPDRSAKNPG--VAGEAKCRFQQIQEAYSVLSDENKRSMYDA   43 (122)
Q Consensus         2 k~HPDkn~~~~~--~~~~a~~~F~~i~~AYevLsd~~kR~~YD~   43 (122)
                      +.|||+.. ++.  +...|.+.-.++++||.+|.||-+|+.|=.
T Consensus        37 kL~~d~~~-~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen   37 KLHPDRPG-LSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             hhCccccc-ccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            56888744 222  223788889999999999999999999975

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0018  Score=47.37  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=29.6

Q ss_pred             ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhc
Q 033295            2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM   40 (122)
Q Consensus         2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~   40 (122)
                      -.||||   ||++.+-|+..|--|..||..|-|+.-|..
T Consensus        80 lVHPDK---N~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   80 LVHPDK---NPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             eecCCC---CcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            479999   555556899999999999999999985443

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.0032  Score=44.73  Aligned_cols=46  Identities=28%  Similarity=0.342  Sum_probs=35.6

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||+..+.+. ++..+...+..++.||.+|.||-+|+.|=....
T Consensus        29 ~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076          29 RAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             HhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            3699999875443 222355789999999999999999999876544

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=89.40  E-value=0.19  Score=43.48  Aligned_cols=27  Identities=4%  Similarity=0.023  Sum_probs=24.4

Q ss_pred             CchhhhhhHHHHHhcCceeeEeecCCC
Q 033295           75 DSFEDLQRMFVEMVDGMSFDFNYDPTD  101 (122)
Q Consensus        75 ~~~~~l~~~l~e~~~G~~~~~~~~~~~  101 (122)
                      ++.+++.++|+++|+|++++|++.|.+
T Consensus       658 dI~y~l~vtLEeLY~G~tKkIKitR~V  684 (871)
T TIGR03835       658 NLVYEEEVPQILFFNNQIKEIKYTRHT  684 (871)
T ss_pred             ceEEecccCHHHHhCCCeEEEEEEEee
Confidence            577889999999999999999997765

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=0.29  Score=36.78  Aligned_cols=28  Identities=39%  Similarity=0.679  Sum_probs=22.0

Q ss_pred             ccCCCCCCCCCCChhHHHHHHHHHHHHHh-cccc
Q 033295            2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYS-VLSD   34 (122)
Q Consensus         2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYe-vLsd   34 (122)
                      ++|||... +    ++..++|..|-+||. ||+.
T Consensus        74 q~hpdsgs-~----~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   74 QVHPDSGS-E----EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HcCCCCCC-c----cccHHHHHHHHHHHHHHHHH
Confidence            79999853 2    256689999999999 8863

>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins

Probab=83.51  E-value=0.86  Score=18.97  Aligned_cols=13  Identities=38%  Similarity=0.859  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhccc
Q 033295           21 RFQQIQEAYSVLS   33 (122)
Q Consensus        21 ~F~~i~~AYevLs   33 (122)
                      .|..+..||+.|+
T Consensus         2 ~~~~V~~aY~~l~   14 (14)
T PF07709_consen    2 KFEKVKNAYEQLS   14 (14)
T ss_pred             cHHHHHHHHHhcC
Confidence            5888999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-07
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-05
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-05
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-05
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		4e-05
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		5e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		6e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		7e-05
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-04
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		6e-04

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +KWHPD   KNP    EA+ RF+Q+ EAY VLSD  KR +YD
Sbjct: 35 LKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAKKRDIYD 73

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          ++WHPD   KNP    EA+ +F+ + EAY VLSD  KRS+YD
Sbjct: 35 LRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYD 73

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 4/42 (9%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPDR+  +     EA+ +F++I+EAY VL+D  KR+ YD
Sbjct: 29 MKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 4/42 (9%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPDR+  +     EA+ +F++I+EAY VL+D  KR+ YD
Sbjct: 29 MKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYD 66

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 4/42 (9%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPDR+  +     EA+ +F++I+EAY VL+D  KR+ YD
Sbjct: 29 MKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYD 66

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          ++WHPD   KNP     A+ +F+++ EAY VLSD++KR +YD
Sbjct: 28 LQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYD 66

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 8/50 (16%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA----GLY 46
          +K+HPD++  NP    EA  +F++I  A+++L+D  KR++YD     GLY
Sbjct: 43 LKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 2  KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 43
          K+HPD +  +P    +AK +F Q+ EAY VLSDE KR  YDA
Sbjct: 34 KYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDA 71

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44
          +K+HPD   KNP  A +    F+QI +AY VLSDE KR +YD G
Sbjct: 34 LKFHPD---KNPDGAEQ----FKQISQAYEVLSDEKKRQIYDQG 70

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44
          +K+HPD   KNP   GE   +F+QI +AY VLSD  KR +YD G
Sbjct: 32 LKYHPD---KNPN-EGE---KFKQISQAYEVLSDAKKRELYDKG 68

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 5/40 (12%)
Query: 3  WHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          WHPD++ K+PG    A+ RF QI +AY +LS+E KR+ YD
Sbjct: 45 WHPDKN-KDPG----AEDRFIQISKAYEILSNEEKRTNYD 79

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPD++ K+P    +A+ +F++I EAY  LSD N+R  YD
Sbjct: 33 MKYHPDKN-KSP----DAEAKFREIAEAYETLSDANRRKEYD 69

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +++HPD++ K PG    A+ +F++I EAY VLSD  KR ++D
Sbjct: 29 LRYHPDKN-KEPG----AEEKFKEIAEAYDVLSDPRKREIFD 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-14
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	4e-14
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	6e-14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-12
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-12
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	8e-12
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	8e-12
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-11
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-11
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	5e-11
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	6e-11
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-11
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-10
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-10
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-10
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-10
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	5e-10
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	6e-10
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-09
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	9e-08
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	4e-07
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-06
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	5e-06
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	8e-06
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	9e-06
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-04

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +KWHPD   KNP    EA+ RF+Q+ EAY VLSD  KR +YD
Sbjct: 35 LKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAKKRDIYD 73

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 61.9 bits (151), Expect = 4e-14
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          ++WHPD   KNP    EA+ +F+ + EAY VLSD  KRS+YD
Sbjct: 35 LRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 61.6 bits (150), Expect = 6e-14
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 3/42 (7%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          ++WHPD   KNP     A+ +F+++ EAY VLSD++KR +YD
Sbjct: 28 LQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           +K HPD++  NP     A   F +I  AY VL DE+ R  YD      LE+     Y   
Sbjct: 28  LKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESW 83

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVN 108
                      D+ +     +R F   V+     F    +     C +
Sbjct: 84  SYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHD 131

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGF 59
           K HPDR  KN      A+ RF+ I  AY  L D+  ++ YD  L  P ++   ++Y +
Sbjct: 42 RKHHPDRV-KNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP-DQRFYNYYQY 98

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 56.6 bits (137), Expect = 8e-12
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEEDEDF 56
           +K+HPD   KNP    EA  +F++I  A+++L+D  KR++YD     GLY   +  +E+ 
Sbjct: 43  LKYHPD---KNPDNP-EAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENV 98

Query: 57  YGF 59
             +
Sbjct: 99  NTY 101

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44
           K+HPD    +     EAK  F+ + EA+ VL DE +R+ YD  
Sbjct: 54 RKYHPDV---SKENDAEAK--FKDLAEAWEVLKDEQRRAEYDQL 92

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 55.3 bits (134), Expect = 1e-11
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +++HPD   KN     E K  F++I EAY VLSD  KR ++D
Sbjct: 29 LRYHPD---KNKEPGAEEK--FKEIAEAYDVLSDPRKREIFD 65

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 1   MKWHPDRSAKNPGVAG--EAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG 58
           + +HPD+ + +       E   +F +I +A+ +L +E  +  YD       E++  +   
Sbjct: 36  LMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR---CEDDLRNVGP 92

Query: 59  FVQEMVSMMNNVKDEGDSFEDLQRM 83
              ++     +  +   SF    R 
Sbjct: 93  VDAQVYLEEMSWNEGDHSFYLSCRC 117

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 54.7 bits (132), Expect = 3e-11
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGF 59
            +HPDR   N G A EA  RF +I +AY VL     R  YD GL    +         
Sbjct: 43 FLYHPDR---NSGSA-EAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPS 97

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44
           ++WHPD   +N     +A+ +F  I  A  VLSD   R  +D G
Sbjct: 408 LQWHPDN-FQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 53.4 bits (129), Expect = 5e-11
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 7/42 (16%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD   KNP    E   +F+QI +AY VLSDE KR +YD
Sbjct: 34 LKFHPD---KNPD-GAE---QFKQISQAYEVLSDEKKRQIYD 68

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 53.4 bits (129), Expect = 6e-11
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
           K+HPD    N     +AK +F Q+ EAY VLSDE KR  YD
Sbjct: 33 KKYHPDT---NKDDP-KAKEKFSQLAEAYEVLSDEVKRKQYD 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 54.0 bits (130), Expect = 8e-11
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          ++ HPD+   +P    +A   FQ++Q+A  +L++E  R+ YD
Sbjct: 46 LECHPDK---HPENP-KAVETFQKLQKAKEILTNEESRARYD 83

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 1  MKWHPDRSAKNPGVAG--EAKCRFQQIQEAYSVLSDENKRSMYD 42
          + +HPD+ + +       E   +F +I +A+ +L +E  +  YD
Sbjct: 42 LLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYD 85

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 53.1 bits (128), Expect = 1e-10
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD   K  G       +F++I EA+ +L+D  KR +YD
Sbjct: 34 LKYHPD---KPTG----DTEKFKEISEAFEILNDPQKREIYD 68

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 52.6 bits (127), Expect = 2e-10
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 4/42 (9%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPDR   N G   EA+ +F++I+EAY VL+D  KR+ YD
Sbjct: 29 MKYHPDR---NQGDK-EAEAKFKEIKEAYEVLTDSQKRAAYD 66

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 5/42 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
           +WHPD++ K+PG    A+ RF QI +AY +LS+E KR+ YD
Sbjct: 43 REWHPDKN-KDPG----AEDRFIQISKAYEILSNEEKRTNYD 79

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 51.2 bits (123), Expect = 5e-10
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          MK+HPD+   N     EAK  F++I EAY  LSD N+R  YD
Sbjct: 33 MKYHPDK---NKSPDAEAK--FREIAEAYETLSDANRRKEYD 69

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 50.7 bits (122), Expect = 6e-10
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +K+HPD+   N          F+ I  AY+VLS+  KR  YD
Sbjct: 33 LKFHPDK---NHAPGATEA--FKAIGTAYAVLSNPEKRKQYD 69

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
          +KWHPD   KNP     A   F+ +Q   + L    K++  D
Sbjct: 42 LKWHPD---KNPENHDIANEVFKHLQNEINRLE---KQAFLD 77

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 52.1 bits (124), Expect = 4e-09
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 1   MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           +K HPD++  NP     A   F +I  AY VL DE+ R  YD      LE+     Y   
Sbjct: 47  LKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESW 102

Query: 61  QEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDF 95
                      D+ +     +R F   V+     F
Sbjct: 103 SYYRYDFGIYDDDPEIITLERREFDAAVNSGELWF 137

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 47.2 bits (112), Expect = 8e-08
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFV 60
           ++HPD   K      E K   +++   Y  + D  K +      +    +  E F   +
Sbjct: 39 KEFHPD---KGGD---EEK--MKKMNTLYKKMEDGVKYAHQPD--FGGFWDATEVFASSL 88

Query: 61 QE 62
            
Sbjct: 89 NP 90

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 1   MKWHPDRSAKNPGVAGE--AKCRFQQIQEAYSVLSDENKRSMY 41
           +  HPD   K  G   E  AK  F ++ +A+S   ++ ++ +Y
Sbjct: 143 LVVHPD---KATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 43
          +  HPD+    PG + +A   F+ +  A + L    K      
Sbjct: 53 VLLHPDKC-VAPG-SEDA---FKAVVNARTALLKNIKSGPSSG 90

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 8/42 (19%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42
           ++HPD+        G  + + +++   Y  + D  K +   
Sbjct: 36 KEFHPDK--------GGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 41.9 bits (98), Expect = 8e-06
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 1   MKWHPDRSAKNPGVAGE-AKCRFQQIQEAYSVLSDENKRSMYDAGL--YDPLEEEDEDFY 57
            ++HPD+ A         A  +   I +A+  L     R+ Y   L  +D   E+     
Sbjct: 29  RQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88

Query: 58  GFVQEMVSMMNNVKDEGDSFEDLQRM 83
                    +    DE +  +D  R+
Sbjct: 89  TAFLMEQLELREELDEIEQAKDEARL 114

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDED 55
           + HPD +        +   +   + +AY  L D  +RS Y   L   ++   E 
Sbjct: 44 AQHHPDMAQ-------QGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQ 91

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 1   MKWHPDRSAKNPGVAGE-AKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGF 59
              HPD  ++      + ++     + +AY  L     R +Y   L+     E  D+   
Sbjct: 71  RLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMD 130

Query: 60  VQEMVSMM--NNVKDEGDSFEDLQRMFVEM 87
            Q ++ +M  N    E +S   ++ +   +
Sbjct: 131 RQFLIEIMEINEKLAEAESEAAMKEIESIV 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.8
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.59
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.5
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.5
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.47
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.47
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.46
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.46
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.44
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.43
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.42
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.41
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.4
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.4
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.37
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.36
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.36
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.28
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.25
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.23
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.23
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.2
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.2
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.18
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.16
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.13
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.08
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	98.99
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	98.97
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	98.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.84
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	98.83
2guz_A	71	Mitochondrial import inner membrane translocase su	98.67
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.5
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.39
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	97.88
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	97.47
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	95.75
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	94.18
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	94.02
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	93.26
2guz_B	65	Mitochondrial import inner membrane translocase su	87.27

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.80  E-value=2.1e-21  Score=149.03  Aligned_cols=96  Identities=23%  Similarity=0.378  Sum_probs=27.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC----Cc-------c--cchhHHHHHHHHhhhc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP----LE-------E--EDEDFYGFVQEMVSMM   67 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~----~~-------~--~~~~~~~~f~~~f~~~   67 (122)
                      ++||||+|+ ++    +|+++|++|++||+||+||++|+.||+.+...    ..       .  +..+|.++|++||+++
T Consensus        54 ~~~HPDk~~-~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~~~~~~f~~~~f~diF~~~Fg~~  128 (329)
T 3lz8_A           54 RKYHPDVSK-EN----DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQ  128 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHCCCCCC-Ch----HHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccccccCCcCCCchhhhhHhhhcCc
Confidence            589999965 33    68899999999999999999999999863211    00       0  1125778899998753


Q ss_pred             c------cccccCCchhhhhhHHHHHhcCceeeEeecCCC
Q 033295           68 N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTD  101 (122)
Q Consensus        68 ~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~  101 (122)
                      .      ...++.|+.++|.|+|+|+|+|++++|.+++.+
T Consensus       129 g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v  168 (329)
T 3lz8_A          129 AHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPV  168 (329)
T ss_dssp             --------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEE
T ss_pred             CCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEe
Confidence            2      123566899999999999999999999996553

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.59  E-value=3.4e-16  Score=101.65  Aligned_cols=45  Identities=44%  Similarity=0.758  Sum_probs=38.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++||||++..++    +|.++|++|++||+||+||.+|+.||..+....
T Consensus        29 ~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A           29 MKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             TTTCTTTCTTTC----THHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             HHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            589999987444    688999999999999999999999999776543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.9e-15  Score=92.08  Aligned_cols=44  Identities=52%  Similarity=0.779  Sum_probs=38.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   48 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~   48 (122)
                      ++||||++..++    ++.++|++|++||+||+||.+|+.||..+..+
T Consensus        33 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A           33 KKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             HHTCTTTCSSCT----THHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             HHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            479999987545    68899999999999999999999999987654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.1e-14  Score=90.65  Aligned_cols=46  Identities=48%  Similarity=0.791  Sum_probs=39.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++||||+++   ...+.+.++|++|++||+||+||.+|+.||..+..+.
T Consensus        35 ~~~HPDk~~---~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A           35 LKWHPDKNP---ENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             TTSCTTTCS---TTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             HHHCcCCCC---CcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            589999965   3335889999999999999999999999999876543

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=5.4e-15  Score=97.35  Aligned_cols=46  Identities=33%  Similarity=0.582  Sum_probs=39.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   50 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~   50 (122)
                      ++||||+++.++    +|.++|++|++||+||+||.+|+.||+.+.....
T Consensus        46 ~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           46 LECHPDKHPENP----KAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             HTTCTTTCTTCS----THHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             HHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            479999987555    6899999999999999999999999997655444

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.47  E-value=9.7e-15  Score=89.92  Aligned_cols=44  Identities=41%  Similarity=0.745  Sum_probs=37.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++||||++. ++    .+.++|+.|++||+||+||.+|+.||..+..+.
T Consensus        29 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A           29 LRYHPDKNK-EP----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             HTTCTTTCC-CT----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             HHHCcCCCC-Cc----cHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            479999975 34    588999999999999999999999999876543

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.8e-14  Score=88.87  Aligned_cols=43  Identities=42%  Similarity=0.669  Sum_probs=37.5

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   48 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~   48 (122)
                      ++||||++. ++    .+.++|++|++||+||+||.+|+.||..+..+
T Consensus        33 ~~~HPDk~~-~~----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A           33 LKFHPDKNH-AP----GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             TTSCTTTCS-SH----HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             HHHCcCCCC-Cc----cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            589999965 33    78999999999999999999999999977643

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.5e-14  Score=93.16  Aligned_cols=42  Identities=43%  Similarity=0.729  Sum_probs=37.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||++..++    ++.++|++|++||+||+||.+|+.||....
T Consensus        43 ~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           43 FLYHPDRNSGSA----EAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             HHSCTTTCSSCS----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             HHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            479999986544    789999999999999999999999998654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.44  E-value=8.9e-15  Score=104.33  Aligned_cols=44  Identities=41%  Similarity=0.628  Sum_probs=38.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   48 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~   48 (122)
                      ++||||+++.++    +|.++|++|++||+||+||.+|+.||+.+...
T Consensus        28 ~~~HPD~~~~~~----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~   71 (210)
T 3apq_A           28 LKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   71 (210)
T ss_dssp             HHHCGGGCTTCT----THHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred             HHHCcCCCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence            479999986555    68899999999999999999999999976544

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.43  E-value=4.6e-14  Score=89.85  Aligned_cols=47  Identities=26%  Similarity=0.548  Sum_probs=38.3

Q ss_pred             CccCCCCCCCCC--CChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            1 MKWHPDRSAKNP--GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         1 lk~HPDkn~~~~--~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      ++||||+++.+.  ++++.+.++|++|++||+||+||.+|+.||..+..
T Consensus        42 ~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           42 LLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             HHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            589999976321  12357899999999999999999999999986543

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.42  E-value=2.2e-14  Score=90.54  Aligned_cols=43  Identities=47%  Similarity=0.815  Sum_probs=37.2

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   48 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~   48 (122)
                      ++||||++. ++    .+.++|++|++||+||+||.+|+.||..+..+
T Consensus        43 ~~~HPDk~~-~~----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           43 REWHPDKNK-DP----GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             HHSCTTTCC-ST----THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             HHHCcCCCC-Ch----hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            479999976 34    68899999999999999999999999977643

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=4e-14  Score=89.96  Aligned_cols=46  Identities=46%  Similarity=0.842  Sum_probs=38.5

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++||||+++.++   +.|.++|++|++||+||+||.+|+.||..+....
T Consensus        35 ~~~HPDk~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A           35 LRWHPDKNPDNK---EEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             HHTCTTTCSSCS---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             HHHCCCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            479999965433   5899999999999999999999999999665443

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.40  E-value=3.8e-14  Score=92.86  Aligned_cols=43  Identities=40%  Similarity=0.692  Sum_probs=37.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      ++||||+++.++    +|.++|++|++||+||+||.+|+.||..+..
T Consensus        43 ~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           43 LKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             HHSCTTTSTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             HHHCcCCCCCcH----HHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            479999976433    7899999999999999999999999997753

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.40  E-value=1.2e-14  Score=95.16  Aligned_cols=47  Identities=36%  Similarity=0.484  Sum_probs=38.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   48 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~   48 (122)
                      ++||||++.+ ++..+.|.++|++|++||+||+||.+|+.||..+..+
T Consensus        42 ~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           42 RKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             HHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             HHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            4799999752 2233578999999999999999999999999977543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=6.9e-14  Score=88.27  Aligned_cols=41  Identities=44%  Similarity=0.750  Sum_probs=36.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||++. +    .++.++|++|++||+||+||.+|+.||..+.
T Consensus        33 ~~~HPDk~~-~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A           33 MKYHPDKNK-S----PDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             HHTCTTTCC-S----HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             HHHCcCCCC-C----hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            479999965 3    3789999999999999999999999998654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.36  E-value=6e-14  Score=85.55  Aligned_cols=39  Identities=51%  Similarity=0.909  Sum_probs=33.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||++   ++    +.++|++|++||+||+||.+|+.||..|.
T Consensus        34 ~~~HPD~~---~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A           34 LKFHPDKN---PD----GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             HHTCTTTC---TT----CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             HHHCcCCC---cC----HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            47999995   42    35799999999999999999999999774

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.36  E-value=5.7e-14  Score=90.63  Aligned_cols=44  Identities=41%  Similarity=0.774  Sum_probs=37.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      ++||||+++.+   ++.|.++|++|++||+||+||.+|+.||..+..
T Consensus        28 ~~~HPDk~~~~---~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~   71 (99)
T 2lgw_A           28 LQWHPDKNPDN---KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE   71 (99)
T ss_dssp             HHTSTTTCCSC---CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HHHCcCCCCcc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            47999996533   357999999999999999999999999986543

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.28  E-value=5.2e-13  Score=92.18  Aligned_cols=45  Identities=24%  Similarity=0.531  Sum_probs=37.4

Q ss_pred             CccCCCCCCCCCC--ChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295            1 MKWHPDRSAKNPG--VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   45 (122)
Q Consensus         1 lk~HPDkn~~~~~--~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~   45 (122)
                      ++||||++..++.  +++.|.++|++|++||+||+||.+|+.||..+
T Consensus        36 ~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A           36 LMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             HHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             HHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4799999875432  34468899999999999999999999999743

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.25  E-value=5.3e-13  Score=93.82  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=36.7

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      ++||||+++++++ +++.|.++|+.|++||+||+||.+|+.||..
T Consensus        29 ~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~   73 (171)
T 1fpo_A           29 RQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (171)
T ss_dssp             HHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4799999875542 3345778999999999999999999999974

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.23  E-value=5.1e-13  Score=84.91  Aligned_cols=39  Identities=36%  Similarity=0.715  Sum_probs=33.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||+++.       ..++|++|++||+||+||.+|+.||..+.
T Consensus        34 ~~~HPDk~~~-------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   72 (92)
T 2o37_A           34 LKYHPDKPTG-------DTEKFKEISEAFEILNDPQKREIYDQYGL   72 (92)
T ss_dssp             HHHCTTSTTC-------CHHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred             HHHCcCCCCC-------hHHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence            4799999642       23699999999999999999999998654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.23  E-value=6.9e-13  Score=95.81  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDA   43 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~   43 (122)
                      ++||||+++++++ +++.|.++|++|++||+||+||.+|+.||.
T Consensus        71 ~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           71 RLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             HHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4799999875442 334578899999999999999999999995

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.20  E-value=1e-12  Score=109.04  Aligned_cols=46  Identities=43%  Similarity=0.656  Sum_probs=18.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   50 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~   50 (122)
                      ++||||+|++++    +|.++|++|++||+||+||.+|+.||+.|..+..
T Consensus        47 ~~~hpd~~~~~~----~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~   92 (780)
T 3apo_A           47 LKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   92 (780)
T ss_dssp             -------------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred             HHHCcCCCCCCh----HHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence            589999976444    6889999999999999999999999998765443

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.18  E-value=4.2e-12  Score=83.86  Aligned_cols=37  Identities=16%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   45 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~   45 (122)
                      ++||||+++   +     .++|++|++||+||+||.+|+.||..+
T Consensus        36 ~~~HPDk~~---~-----~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A           36 KEFHPDKGG---D-----EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             TTCCTTTCC---T-----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             HHHCCCCCc---c-----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            689999954   2     368999999999999999999999754

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.16  E-value=2.7e-12  Score=90.39  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      ++||||+++ +       .++|++|++||+||+||.+|+.||+.|.
T Consensus        39 ~~~HPDk~~-~-------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           39 KEFHPDKGG-D-------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             GGCSCC----C-------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             HHHCcCCCC-C-------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            579999954 2       2689999999999999999999999773

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=8.2e-12  Score=79.05  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM   40 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~   40 (122)
                      ++||||+++ ++    .+.++|++|++||+||+||.+|+.
T Consensus        53 ~~~HPDk~~-~~----~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           53 VLLHPDKCV-AP----GSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HHHCTTTCC-CT----THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHCcCCCC-Cc----cHHHHHHHHHHHHHHHCCcccccC
Confidence            479999976 34    588899999999999999999974

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.08  E-value=4e-11  Score=75.73  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   41 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~Y   41 (122)
                      ++||||+|+   ++.++|.++|++|++||+||+|...|..+
T Consensus        42 ~~~HPDk~~---~~~~~a~~~F~~I~~AYevL~~~~~r~~~   79 (88)
T 1iur_A           42 LKWHPDKNP---ENHDIANEVFKHLQNEINRLEKQAFLDQN   79 (88)
T ss_dssp             HHTCTTTSS---SCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred             HHHCCCCCC---CchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            479999954   33357999999999999999998887443

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=98.99  E-value=8.1e-12  Score=81.47  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             CccCCCCCCC---CCCChhHHHHHHHHHHHHHhcccccch
Q 033295            1 MKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVLSDENK   37 (122)
Q Consensus         1 lk~HPDkn~~---~~~~~~~a~~~F~~i~~AYevLsd~~k   37 (122)
                      |+||||||+.   +++.+..|+++|++|++||+||||+..
T Consensus        66 l~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           66 LILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             HHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            5799999762   122334689999999999999999863

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=98.97  E-value=1.4e-11  Score=87.30  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   45 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~   45 (122)
                      ++||||++++       |.++|+.|++||+||+||.+|+.||...
T Consensus        44 ~~~HPDk~~~-------a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           44 AQHHPDMAQQ-------GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             HTCCTTSCCS-------CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHhCcCCCcc-------HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            4799999642       5578999999999999999999999843

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=98.91  E-value=1.7e-10  Score=71.37  Aligned_cols=36  Identities=17%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      ++||||++.        +.++|++|++||+||+|+.+|..++-+
T Consensus        39 ~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~~g   74 (79)
T 1faf_A           39 LLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence            479999953        247899999999999999999985543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.84  E-value=3.8e-10  Score=85.56  Aligned_cols=43  Identities=37%  Similarity=0.628  Sum_probs=30.6

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   44 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~   44 (122)
                      +++|||+.+ .++++++|.++|++|++||+||+||++|+.||.|
T Consensus       408 l~~~pd~~~-~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          408 LQWHPDNFQ-NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             HHSCGGGCC-SHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             HHhCCCCCC-CchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            468999964 2222457999999999999999999999999975

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=98.83  E-value=3.2e-10  Score=72.12  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD   34 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd   34 (122)
                      |+||||||++++. ...|.++|++|++||+||.+
T Consensus        59 l~~HPDK~~~~~~-~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           59 LVVHPCKATGQPY-EQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             HHTCHHHHTTSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCcCCCCCchh-HhHHHHHHHHHHHHHHHHHh
Confidence            5799999764432 23589999999999999975

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.67  E-value=2e-09  Score=65.14  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhh
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS   39 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~   39 (122)
                      ++||||++. +       .++|++|++||+||+|+..|+
T Consensus        41 ~~~HPDk~g-~-------~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           41 LANHPDKGG-S-------PFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             HHHCGGGTC-C-------HHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHCCCCCC-C-------HHHHHHHHHHHHHHhhhhhcC
Confidence            479999952 2       359999999999999998764

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=5.6e-09  Score=67.46  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=37.0

Q ss_pred             CCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           74 GDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        74 ~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      .++.++|.|+|+|||+|.+++|.|++..    .|+.|+|+|+++++
T Consensus         2 ~~~~~~l~vslee~~~G~~~~i~~~~~~----~C~~C~G~G~~~g~   43 (104)
T 2ctt_A            2 SSGSSGMELTFNQAAKGVNKEFTVNIMD----TCERCNGKGNEPGT   43 (104)
T ss_dssp             CCCCCCCCCCCSSCCSSSCTTCCSSCCE----ECSSSSSSSSCTTC
T ss_pred             CceEEEEEEEHHHHcCCCEEEEEeeeee----ECCCCcCCccCCCC
Confidence            4677899999999999999999997765    99999999988764

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.39  E-value=3.7e-08  Score=72.65  Aligned_cols=46  Identities=13%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             ccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           70 VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        70 ~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      .+++.|+.++|.+||+|+|+|++++|.|++..    .|..|+|+|+++++
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~----~C~~C~G~G~~~g~   53 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQI----LCKECEGRGGKKGA   53 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEE----ECTTTTTCSBSTTT
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEE----eCCCCcCccCCCCC
Confidence            34567999999999999999999999996654    89999999987653

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=97.88  E-value=3.8e-06  Score=59.32  Aligned_cols=24  Identities=25%  Similarity=0.621  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHhcccccchhhcc
Q 033295           18 AKCRFQQIQEAYSVLSDENKRSMY   41 (122)
Q Consensus        18 a~~~F~~i~~AYevLsd~~kR~~Y   41 (122)
                      |+++|++|++||+||+||.+|+.|
T Consensus       159 A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          159 AKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHHHHHCCHHhhhhC
Confidence            889999999999999999999988

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=97.47  E-value=1.7e-05  Score=55.72  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=29.9

Q ss_pred             CCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccC
Q 033295           74 GDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAK  116 (122)
Q Consensus        74 ~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~  116 (122)
                      .|+.++|.+||+|+|+|++++|.+++      .|..|+|.|..
T Consensus         3 ~d~~~~l~islee~~~G~~k~i~i~~------~c~~c~G~g~~   39 (181)
T 3agx_A            3 PPVTHDLRVSLEEIYSGCTKKMKISH------KRLNPDGKSIR   39 (181)
T ss_dssp             ---CEEEEECHHHHHHCEEEEEEEEE------EEECTTSSCEE
T ss_pred             CCEEEEEEEEHHHhcCCcEEEEEEec------ccCCCCCceEE
Confidence            46778899999999999999999953      49999998854

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=95.75  E-value=0.0011  Score=46.23  Aligned_cols=29  Identities=10%  Similarity=-0.051  Sum_probs=25.2

Q ss_pred             cCCchhhhhhHHHHHhcCceeeEeecCCC
Q 033295           73 EGDSFEDLQRMFVEMVDGMSFDFNYDPTD  101 (122)
Q Consensus        73 ~~~~~~~l~~~l~e~~~G~~~~~~~~~~~  101 (122)
                      +.|+.++|.+||+|+|+|++++|.+++.+
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~   31 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKR   31 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEE
Confidence            45788999999999999999999997654

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=94.18  E-value=0.0012  Score=54.60  Aligned_cols=39  Identities=13%  Similarity=0.140  Sum_probs=34.5

Q ss_pred             hhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295           77 FEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        77 ~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      .+.+.++|+|++.|..++++|.+..    .|..|.|+|++.++
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~----~C~tCHGsGA~~Gt  206 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSID----TCNSCHSNLAFHGG  206 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSH----HHHHHHSSCCTTTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCC----cCCCCCCCCCcCCc
Confidence            4778999999999999999996665    99999999998875

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=94.02  E-value=0.0096  Score=41.07  Aligned_cols=25  Identities=12%  Similarity=0.118  Sum_probs=22.2

Q ss_pred             CchhhhhhHHHHHhcCceeeEeecC
Q 033295           75 DSFEDLQRMFVEMVDGMSFDFNYDP   99 (122)
Q Consensus        75 ~~~~~l~~~l~e~~~G~~~~~~~~~   99 (122)
                      |+.++|.+||+|+|+|++++|++++
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~   26 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGR   26 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEE
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEE
Confidence            5667899999999999999999965

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=93.26  E-value=0.016  Score=34.67  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=17.2

Q ss_pred             CceeeEeecCCCcccccccCCCccccCCC
Q 033295           90 GMSFDFNYDPTDAQRACVNTSKGKAAKRG  118 (122)
Q Consensus        90 G~~~~~~~~~~~~~~~~C~~C~G~G~~~~  118 (122)
                      |.+++|.|++..    .|+.|+|+|..++
T Consensus         1 G~~~~i~~~~~~----~C~~C~G~G~~~~   25 (79)
T 1exk_A            1 GVTKEIRIPTLE----ECDVCHGSGAKPG   25 (79)
T ss_dssp             CTTTSCCCCCEE----ECGGGTTTSBCSS
T ss_pred             CcEEEEEcccce----ECCCCcccccCCC
Confidence            556777775554    7888888886543

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=87.27  E-value=0.17  Score=29.43  Aligned_cols=25  Identities=8%  Similarity=-0.076  Sum_probs=19.1

Q ss_pred             ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033295            2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD   34 (122)
Q Consensus         2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd   34 (122)
                      ..|||+..        ..-....|++|+++|-.
T Consensus        34 ~nhPDkGG--------S~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B           34 VNDKEKGG--------SFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HTCGGGTC--------CHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCC--------CHHHHHHHHHHHHHHHH
Confidence            47999942        23678889999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	7e-07
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-05
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	7e-05
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-04
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	0.004

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (99), Expect = 7e-07
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 41
          +  HPD++         AK  F ++ +A+S   ++ ++ +Y
Sbjct: 59 LVVHPDKA-TGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (90), Expect = 1e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 17 EAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 48
          E   +F +I +A+ +L +E  +  YD     P
Sbjct: 60 ECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 36.5 bits (84), Expect = 7e-05
 Identities = 3/24 (12%), Positives = 7/24 (29%)

Query: 21 RFQQIQEAYSVLSDENKRSMYDAG 44
            Q++   +     E      + G
Sbjct: 51 LMQELNSLWGTFKTEVYNLRMNLG 74

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MKWHPDRSAKNPGVAGEAKC-RFQQIQEAYSVLSDENKRSMYDAGLY 46
           ++HPD+ A        A   +   I +A+  L     R+ Y   L+
Sbjct: 29 RQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 31.9 bits (72), Expect = 0.004
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 1  MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE 51
          MK+HPDR+  +     EA+ +F++I+EAY VL+D  KR+ YD   +   E+
Sbjct: 29 MKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.57
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.45
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.43
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.25
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.1
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.01
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	97.15
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	96.09
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	95.64
d1aiea_	31	p53 tetramerization domain {Human (Homo sapiens) [	81.73
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	81.47

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.1e-16  Score=95.14  Aligned_cols=45  Identities=44%  Similarity=0.758  Sum_probs=38.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   49 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~   49 (122)
                      ++||||+|..++    ++.++|++|++||+||+||.+|+.||..|...+
T Consensus        29 ~~~HPDk~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_          29 MKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             HHTCCTTCTTTC----HHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             hhhhhhccCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            479999987444    788999999999999999999999999876543

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.1e-15  Score=90.44  Aligned_cols=45  Identities=40%  Similarity=0.737  Sum_probs=38.8

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   50 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~   50 (122)
                      +++|||++. ++    ++.++|+.|++||+||+||.+|+.||+.|..++.
T Consensus        29 ~~~hPD~~~-~~----~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~   73 (77)
T d1hdja_          29 LRYHPDKNK-EP----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             HTTCTTTCC-CT----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             HHhcccccc-ch----hHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            479999975 44    5788999999999999999999999998876554

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.3e-14  Score=91.31  Aligned_cols=47  Identities=23%  Similarity=0.490  Sum_probs=38.0

Q ss_pred             CccCCCCCCCCCC--ChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            1 MKWHPDRSAKNPG--VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         1 lk~HPDkn~~~~~--~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      ++||||+|..+..  ...+++++|++|++||+||+||++|+.||.....
T Consensus        42 ~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~   90 (94)
T d1wjza_          42 LLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             HHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence            5899999764321  2357889999999999999999999999976543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.43  E-value=2.5e-14  Score=92.85  Aligned_cols=39  Identities=15%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      |+||||||+ ++       ++|++|++||+||+||++|+.||..+..
T Consensus        36 ~k~HPDk~~-~~-------e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_          36 KEFHPDKGG-DE-------EKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             TTCCTTTCC-TT-------TTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHhcccchh-hH-------HHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            689999964 33       4799999999999999999999986543

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=1.2e-13  Score=87.50  Aligned_cols=40  Identities=23%  Similarity=0.498  Sum_probs=34.7

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcc
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   41 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~Y   41 (122)
                      ++||||++. ++...+.|.+.|++|++||+||+||.+|+.|
T Consensus        59 ~~~HPDk~~-~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          59 LVVHPDKAT-GQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             HHSCHHHHT-TSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             HHhccccCC-ChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            479999987 4444567899999999999999999999998

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.2e-13  Score=82.35  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=35.8

Q ss_pred             CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295            1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDA   43 (122)
Q Consensus         1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~   43 (122)
                      ++||||++.+.+. +++.|...|+.|++||+||+||.+|+.|+.
T Consensus        29 ~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1          29 RQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3699999765432 345688999999999999999999999975

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.10  E-value=5.8e-12  Score=76.62  Aligned_cols=39  Identities=15%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   47 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~   47 (122)
                      ++||||++. +       .++|++|++||+||+|+.+|..||.++..
T Consensus        39 ~~~HPDk~g-~-------~e~~~~in~Ay~~L~d~~~r~~~~~~~~~   77 (79)
T d1fafa_          39 LLLHPDKGG-S-------HALMQELNSLWGTFKTEVYNLRMNLGGTG   77 (79)
T ss_dssp             HHSSGGGSC-C-------HHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred             HHhCcccCC-C-------HHHHHHHHHHHHHHCCHHHHHHHccCCCC
Confidence            479999953 2       35899999999999999999999997653

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.9e-11  Score=73.83  Aligned_cols=40  Identities=28%  Similarity=0.547  Sum_probs=31.9

Q ss_pred             CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295            1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   46 (122)
Q Consensus         1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~   46 (122)
                      |+||||+|   |++.+.|+++|+.|++||++|++   +..||.+..
T Consensus        42 ~~~HPDk~---~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          42 LKWHPDKN---PENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             HHTCTTTS---SSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHhccccc---cchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            57999995   44456899999999999999974   667776554

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=3.4e-05  Score=45.71  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=21.1

Q ss_pred             CchhhhhhHHHHHhcCceeeEeec
Q 033295           75 DSFEDLQRMFVEMVDGMSFDFNYD   98 (122)
Q Consensus        75 ~~~~~l~~~l~e~~~G~~~~~~~~   98 (122)
                      ++..+|.+||+|+|+|+++.+.+.
T Consensus         2 ~v~~~l~vtLee~~~G~~k~i~~~   25 (80)
T d1c3ga1           2 TVQVNLPVSLEDLFVGKKKSFKIG   25 (80)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEE
T ss_pred             CEEEEeEEEHHHHhCCCceEeecc
Confidence            456789999999999999999994

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.00034  Score=40.61  Aligned_cols=30  Identities=10%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             cccCCchhhhhhHHHHHhcCceeeEeecCC
Q 033295           71 KDEGDSFEDLQRMFVEMVDGMSFDFNYDPT  100 (122)
Q Consensus        71 ~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~  100 (122)
                      +++.|+..+|.+||+|||.|+++.+.+.+.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~   31 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRK   31 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEE
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCc
Confidence            456789999999999999999999988654

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.00093  Score=39.18  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             CceeeEeecCCCcccccccCCCccccCCCC
Q 033295           90 GMSFDFNYDPTDAQRACVNTSKGKAAKRGT  119 (122)
Q Consensus        90 G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~  119 (122)
                      |.+++|.|++.+    .|+.|+|+|+.+++
T Consensus         1 G~~k~i~i~~~~----~C~~C~G~G~~~g~   26 (79)
T d1exka_           1 GVTKEIRIPTLE----ECDVCHGSGAKPGT   26 (79)
T ss_dssp             CTTTSCCCCCEE----ECGGGTTTSBCSSS
T ss_pred             CceEEEEeeeec----cCCCCcCcccCCCc
Confidence            678889996665    89999999987764

>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: p53 tetramerization domain
superfamily: p53 tetramerization domain
family: p53 tetramerization domain
domain: p53 tetramerization domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=0.29  Score=22.66  Aligned_cols=18  Identities=33%  Similarity=0.440  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHhccccc
Q 033295           17 EAKCRFQQIQEAYSVLSDE   35 (122)
Q Consensus        17 ~a~~~F~~i~~AYevLsd~   35 (122)
                      +--+.|++|++|.| |.|.
T Consensus        11 ~rfemfrelneale-lkda   28 (31)
T d1aiea_          11 ERFEMFRELNEALE-LKDA   28 (31)
T ss_dssp             HHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHh-hhhc
Confidence            56789999999998 4444

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.47  E-value=0.13  Score=29.33  Aligned_cols=26  Identities=15%  Similarity=0.236  Sum_probs=22.1

Q ss_pred             ccCCchhhhhhHHHHHhcCceeeEee
Q 033295           72 DEGDSFEDLQRMFVEMVDGMSFDFNY   97 (122)
Q Consensus        72 ~~~~~~~~l~~~l~e~~~G~~~~~~~   97 (122)
                      .+.|.+.++.++|.||+.|++++|..
T Consensus         5 ~G~dL~~~~~I~~~eal~G~~~~i~~   30 (80)
T d1nlta2           5 DGDDLVYEAEIDLLTAIAGGEFALEH   30 (80)
T ss_dssp             ETTEEEEEEEEEHHHHHHCBCCEEEC
T ss_pred             eCCEEEEEEEeCHHHHhCCCEEEEEe
Confidence            35578899999999999999987754