Citrus Sinensis ID: 033297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPKRV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccEEEEEEcccEEEEEEEcHHHHHHHHHHHHHHHHHHcHcccHccHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mgllqpdpflnELTSMFernrdkgsvwvtfkrssmksksqknkmatagepveyrcliratdgkqkisttvgakdHQRFQASYATLLKAHMAALKKRErkdkkkgvdgdrkdgagstkkpkrv
Flexible Loop (DISEMBL)
MGLLQPDPFLNELTSmfernrdkgsvwvtfkrssmksksqknkmatagepveyrCLIRATDGKQKIsttvgakdhqRFQASYATLLKAHMAALkkrerkdkkkgvdgdrkdgagstkkpkrv
Low Complexity Region (SEG)
MGLLQPDPFLNELTSMFERNRDKGSVWVTFkrssmksksqknkMATAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQASYATLLKAHMAALkkrerkdkkkgvdgdrkdgAGSTKKPKRV
Disordered region (IsUnstruct)
*************************VWVT*********************VEYRCLIRATDGKQKISTTVGA**HQRFQASYATLLKA**********************************
Disordered Region (DISOPRED)
MGLLQPDPFLNELTSMFERNRDKGSVWVTF************************CLIRATDGKQKISTTVGAKDHQRFQASYATLLKAHM********************************
Disordered Region (DISEMBL)
MGLLQPDPFLNELTSMFERNRDKGSVWVTFKR***************GEPVEYRCLIRATDGKQKISTTVGAKDHQRFQASYATLLKAHMAA******************************
Disordered Region (DISPRO)
*GLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMK**************VEYRCLIRATDGKQKISTTVGAKDHQRFQASYATLLKAHMAALK****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPKRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
O04421	121	Signal recognition partic	yes	no	0.983	0.991	0.7	2e-41
O04433	132	Signal recognition partic	yes	no	0.762	0.704	0.677	3e-33
Q4R5C7	144	Signal recognition partic	N/A	no	0.827	0.701	0.460	1e-19
Q5RBX7	136	Signal recognition partic	yes	no	0.819	0.735	0.455	3e-19
P37108	136	Signal recognition partic	yes	no	0.819	0.735	0.455	3e-19
P16254	110	Signal recognition partic	yes	no	0.762	0.845	0.457	2e-17
A6QQL9	110	Signal recognition partic	yes	no	0.762	0.845	0.446	3e-16
P16255	110	Signal recognition partic	yes	no	0.762	0.845	0.446	3e-16
Q556L1	123	Signal recognition partic	yes	no	0.754	0.747	0.389	1e-09
O16927	116	Signal recognition partic	yes	no	0.713	0.75	0.344	1e-05

>sp|O04421|SRP14_ARATH Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 103/120 (85%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFE++++KGSVWVT KRSS+KSK QK K+++ GE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ +ST+VGAKDHQRFQASYAT+LKAHM ALKKRERKD+KK  + ++K+   +TK  K
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTKSKK 120

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.
Arabidopsis thaliana (taxid: 3702)

>sp|O04433|SRP14_ORYSJ Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica GN=SRP14 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 78/93 (83%)

Query: 1  MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
          M +LQPDPFL+ELTSM+ER+ +KGSVWVT KRSSMK +++  KMA  GE VEYRCL+RAT
Sbjct: 1  MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60

Query: 61 DGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
          DGK+ I T + AK++ +FQASYAT+LKAHM AL
Sbjct: 61 DGKKNICTALSAKEYLKFQASYATVLKAHMHAL 93

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4R5C7|SRP14_MACFA Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
           M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K    G EP + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 60  TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDK 101
           TDGK+KIST V +K+  +FQ +Y+ LL+A+M  LKKR++K+K
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNK 102

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Macaca fascicularis (taxid: 9541)

>sp|Q5RBX7|SRP14_PONAB Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
           M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K    G EP + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 60  TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKD 100
           TDGK+KIST V +K+  +FQ +Y+ LL+A+M  LKKR++K+
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKN 101

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Pongo abelii (taxid: 9601)

>sp|P37108|SRP14_HUMAN Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
           M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K    G EP + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 60  TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKD 100
           TDGK+KIST V +K+  +FQ +Y+ LL+A+M  LKKR++K+
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKN 101

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Homo sapiens (taxid: 9606)

>sp|P16254|SRP14_MOUSE Signal recognition particle 14 kDa protein OS=Mus musculus GN=Srp14 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 64/94 (68%), Gaps = 1/94 (1%)

Query: 1  MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
          M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K +  G EP E +CL+RA
Sbjct: 1  MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60

Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
          TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct: 61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Mus musculus (taxid: 10090)

>sp|A6QQL9|SRP14_BOVIN Signal recognition particle 14 kDa protein OS=Bos taurus GN=SRP14 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 64/94 (68%), Gaps = 1/94 (1%)

Query: 1  MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
          M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K +  G EP + +CL+RA
Sbjct: 1  MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60

Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
          TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Bos taurus (taxid: 9913)

>sp|P16255|SRP14_CANFA Signal recognition particle 14 kDa protein OS=Canis familiaris GN=SRP14 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 64/94 (68%), Gaps = 1/94 (1%)

Query: 1  MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
          M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K +  G EP + +CL+RA
Sbjct: 1  MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60

Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
          TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Canis familiaris (taxid: 9615)

>sp|Q556L1|SRP14_DICDI Signal recognition particle 14 kDa protein OS=Dictyostelium discoideum GN=srp14-1 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 3  LLQPDPFLNELTSMFERNRDKGSVWVTFKR---SSMKSKSQKNKMATAGEPVEYRCLIRA 59
          LL  D FL+ L  +++    KG+VWVT K+   S      +K +     E  E +CL+RA
Sbjct: 2  LLDNDAFLSALNKLYQTTSKKGTVWVTMKKYVDSDSNFSRKKAERIKESEEEENKCLVRA 61

Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALK 94
          T+GK+KIST V AKD   F+ +Y  +L  ++  LK
Sbjct: 62 TNGKKKISTIVLAKDKSMFEKNYKNVLLINLDNLK 96

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp9 together with srp14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of srp9 and srp14 is required for SRP RNA binding.

Dictyostelium discoideum (taxid: 44689)

>sp|O16927|SRP14_CAEEL Signal recognition particle 14 kDa protein OS=Caenorhabditis elegans GN=F25G6.8 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 7  DPFLNELTSMFERNRDKG--SVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQ 64
          D FL +LT+ +  ++ +G  SV+VT K    ++K+   K +T  E  E  C+ RA  G +
Sbjct: 11 DQFLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMP-KGSTFKEGDEISCIFRAKWGSK 69

Query: 65 KISTTVGAKDHQRFQASYATLLKAHMAALK 94
          KI+T V AK+  +F   Y+ ++ A M  L+
Sbjct: 70 KIATEVKAKEVNKFHTQYSAIIVAQMVNLE 99

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224121816	121	predicted protein [Populus trichocarpa]	0.991	1.0	0.745	3e-41
388498074	123	unknown [Lotus japonicus]	0.975	0.967	0.743	6e-41
118483992	121	unknown [Populus trichocarpa]	0.991	1.0	0.737	9e-41
297828079	118	signal recognition particle 14 kDa famil	0.959	0.991	0.726	2e-40
358344655	120	Signal recognition particle 14 kDa prote	0.975	0.991	0.743	2e-40
15224325	121	signal recognition particle subunit SRP1	0.983	0.991	0.7	1e-39
351726180	120	uncharacterized protein LOC100526909 [Gl	0.975	0.991	0.743	1e-39
449454975	118	PREDICTED: signal recognition particle 1	0.967	1.0	0.729	1e-39
2208946	121	signal recognition particle subunit 14 [	0.959	0.966	0.708	1e-38
351724345	120	uncharacterized protein LOC100500453 [Gl	0.934	0.95	0.745	8e-38

>gi|224121816|ref|XP_002330660.1| predicted protein [Populus trichocarpa] gi|222872264|gb|EEF09395.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 106/122 (86%), Gaps = 1/122 (0%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELT++++ + DKGS+WVT KRSSMKSK Q+NKM T GEP+EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ IST+VGA+DHQRFQASYAT+LKAHM ALKKRERKDKKK  +GD+K+G    KKPK
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAEGDKKEG-DVKKKPK 119

Query: 121 RV 122
           RV
Sbjct: 120 RV 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498074|gb|AFK37103.1| unknown [Lotus japonicus]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 107/121 (88%), Gaps = 2/121 (1%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTS+FER+ +KGSVWVT KRSS+KSK Q+NK+ATAGE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ IST+VG KDHQRFQASYAT+LKAHM ALKKRERKDKKK  + D+++  GS+K+PK
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKSAEADKRE--GSSKRPK 118

Query: 121 R 121
           +
Sbjct: 119 K 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483992|gb|ABK93883.1| unknown [Populus trichocarpa]

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 105/122 (86%), Gaps = 1/122 (0%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELT++++ + DKGS+WVT KRSSMKSK Q+NKM T GEP+EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ IST+VGA+DHQRFQASYAT+LKAHM ALKKRERKDKKK  + D+K+G    KKPK
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAESDKKEG-DVKKKPK 119

Query: 121 RV 122
           RV
Sbjct: 120 RV 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828079|ref|XP_002881922.1| signal recognition particle 14 kDa family protein [Arabidopsis lyrata subsp. lyrata] gi|297327761|gb|EFH58181.1| signal recognition particle 14 kDa family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 104/117 (88%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFE++++KGSVWVT KRSS+KSK QK K+++AGE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSAGESIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTK 117
           DGK+ +ST+VGAKDHQRFQASYAT+LKAHM ALKKRERKD+KK  + ++K+G  +TK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKEGTSTTK 117

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344655|ref|XP_003636403.1| Signal recognition particle 14 kDa protein [Medicago truncatula] gi|355502338|gb|AES83541.1| Signal recognition particle 14 kDa protein [Medicago truncatula]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 106/121 (87%), Gaps = 2/121 (1%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFER+ +KG+VWVT KRSS+KSK QKNK+ TAGE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGTVWVTLKRSSLKSKVQKNKLVTAGEAIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           +GK+ ISTTVG KDHQRFQASYAT+LKAHM ALKKRERKDKKK  + D+++  GS+K+PK
Sbjct: 61  NGKKTISTTVGPKDHQRFQASYATILKAHMTALKKRERKDKKKSAEIDKRE--GSSKRPK 118

Query: 121 R 121
           +
Sbjct: 119 K 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224325|ref|NP_181892.1| signal recognition particle subunit SRP14 [Arabidopsis thaliana] gi|145331117|ref|NP_001078050.1| signal recognition particle subunit SRP14 [Arabidopsis thaliana] gi|148887436|sp|O04421.2|SRP14_ARATH RecName: Full=Signal recognition particle 14 kDa protein; Short=SRP14 gi|2281106|gb|AAB64042.1| putative signal recognition particle protein 14kD, ATSRP14 [Arabidopsis thaliana] gi|21618107|gb|AAM67157.1| putative 14kD signal recognition particle protein ATSRP14 [Arabidopsis thaliana] gi|27765064|gb|AAO23653.1| At2g43640 [Arabidopsis thaliana] gi|110743029|dbj|BAE99407.1| putative signal recognition particle protein 14kD [Arabidopsis thaliana] gi|222424082|dbj|BAH20001.1| AT2G43640 [Arabidopsis thaliana] gi|330255204|gb|AEC10298.1| signal recognition particle subunit SRP14 [Arabidopsis thaliana] gi|330255205|gb|AEC10299.1| signal recognition particle subunit SRP14 [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 103/120 (85%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFE++++KGSVWVT KRSS+KSK QK K+++ GE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ +ST+VGAKDHQRFQASYAT+LKAHM ALKKRERKD+KK  + ++K+   +TK  K
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTKSKK 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726180|ref|NP_001235838.1| uncharacterized protein LOC100526909 [Glycine max] gi|255631129|gb|ACU15930.1| unknown [Glycine max]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 105/121 (86%), Gaps = 2/121 (1%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFER+   GSVWVT KRSS+KSK Q+NK+ATAGE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTKLGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ IST+VG KDHQRFQASYAT+LKAHM ALKKRERKDKKK  + D+++  GS+K+PK
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKPAEADKRE--GSSKRPK 118

Query: 121 R 121
           +
Sbjct: 119 K 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454975|ref|XP_004145229.1| PREDICTED: signal recognition particle 14 kDa protein-like [Cucumis sativus] gi|449474535|ref|XP_004154207.1| PREDICTED: signal recognition particle 14 kDa protein-like [Cucumis sativus] gi|449506299|ref|XP_004162708.1| PREDICTED: signal recognition particle 14 kDa protein-like [Cucumis sativus]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 104/122 (85%), Gaps = 4/122 (3%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFER+ +KGSVWVT KRSS+KSK Q+NKM TAG+P+EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ IST+VGAKDH RFQASY+T+LKAHM ALKKRERKDKKK  + ++    G  KKP+
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK----GLKKKPR 116

Query: 121 RV 122
           +V
Sbjct: 117 KV 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2208946|emb|CAA71202.1| signal recognition particle subunit 14 [Arabidopsis thaliana]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 103/120 (85%), Gaps = 3/120 (2%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFE++++KGSVWVT KRSS+KSK QK K+++ GE +EYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
           DGK+ +ST+VGAKDHQRFQASYAT+LKAHM ALKKRERKD+KK  + ++K+   ST  PK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKE---STSTPK 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724345|ref|NP_001238334.1| uncharacterized protein LOC100500453 [Glycine max] gi|255630367|gb|ACU15540.1| unknown [Glycine max]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 98/114 (85%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
           M LLQ DPFLNELTSMFER+   GSVWVT KRSS+KSK Q+NK+A AGE VE+RCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTKLGSVWVTLKRSSLKSKVQRNKLAAAGEAVEFRCLIRAT 60

Query: 61  DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAG 114
           DGK+ IST+VG KDHQRFQASYAT+LKAHM ALKKRERKDKKK  + D+++G+ 
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKPAEADKREGSS 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2044029	121	AT2G43640 "AT2G43640" [Arabido	0.762	0.768	0.655	9.1e-29
MGI|MGI:107169	110	Srp14 "signal recognition part	0.762	0.845	0.425	8.8e-15
RGD|1308506	110	Srp14 "signal recognition part	0.762	0.845	0.425	8.8e-15
UNIPROTKB|P37108	136	SRP14 "Signal recognition part	0.762	0.683	0.414	3.8e-14
UNIPROTKB|F1SS29	110	LOC100620327 "Uncharacterized	0.762	0.845	0.414	7.9e-14
UNIPROTKB|A6QQL9	110	SRP14 "Signal recognition part	0.762	0.845	0.414	1.3e-13
UNIPROTKB|J9P615	110	SRP14 "Signal recognition part	0.762	0.845	0.414	1.3e-13
UNIPROTKB|P16255	110	SRP14 "Signal recognition part	0.762	0.845	0.414	1.3e-13
UNIPROTKB|Q5ZIE3	110	SRP14 "Uncharacterized protein	0.762	0.845	0.404	2.1e-13
ZFIN|ZDB-GENE-050913-131	110	srp14 "signal recognition part	0.762	0.845	0.414	3.4e-13

TAIR|locus:2044029 AT2G43640 "AT2G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 61/93 (65%), Positives = 73/93 (78%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAGEPVEYRCLIRAT 60
             M LLQ DPFLNELTSMFE++++KGSVWVT              +++ GE +EYRCLIRAT
Sbjct:     1 MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query:    61 DGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             DGK+ +ST+VGAKDHQRFQASYAT+LKAHM AL
Sbjct:    61 DGKKTVSTSVGAKDHQRFQASYATILKAHMTAL 93

GO:0003723 "RNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISS

GO:0006605 "protein targeting" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

MGI|MGI:107169 Srp14 "signal recognition particle 14" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/94 (42%), Positives = 58/94 (61%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T               +  G EP E +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

GO:0045047 "protein targeting to ER" evidence=ISO

GO:0048500 "signal recognition particle" evidence=IEA

RGD|1308506 Srp14 "signal recognition particle 14" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/94 (42%), Positives = 58/94 (61%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T               +  G EP E +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0045047 "protein targeting to ER" evidence=ISO

UNIPROTKB|P37108 SRP14 "Signal recognition particle 14 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 39/94 (41%), Positives = 57/94 (60%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T                  G EP + +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0045047 "protein targeting to ER" evidence=IMP

GO:0003723 "RNA binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1SS29 LOC100620327 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 39/94 (41%), Positives = 58/94 (61%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T               +  G EP + +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPADNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

UNIPROTKB|A6QQL9 SRP14 "Signal recognition particle 14 kDa protein" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/94 (41%), Positives = 58/94 (61%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T               +  G EP + +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0042493 "response to drug" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|J9P615 SRP14 "Signal recognition particle 14 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/94 (41%), Positives = 58/94 (61%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T               +  G EP + +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

UNIPROTKB|P16255 SRP14 "Signal recognition particle 14 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/94 (41%), Positives = 58/94 (61%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T               +  G EP + +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0005829 "cytosol" evidence=TAS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|Q5ZIE3 SRP14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/94 (40%), Positives = 57/94 (60%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXX-XXXMATAGEPVEYRCLIRA 59
             M LL+ + FL ELT +F++ R  GSV++T                  + EP + +CL+RA
Sbjct:     1 MVLLESEQFLTELTRLFQKCRTSGSVFITLKKYDGRTKPVPRKGHVESFEPADNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

ZFIN|ZDB-GENE-050913-131 srp14 "signal recognition particle 14" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/94 (41%), Positives = 54/94 (57%)

Query:     1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXX-XXXMATAGEPVEYRCLIRA 59
             M LL+ D FL ELT +F++ R  GSV +T                    EP + +CL+RA
Sbjct:     1 MVLLENDAFLTELTRLFQKCRSSGSVLITLKKYDGRTKPVPRKGHPETFEPADNKCLLRA 60

Query:    60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
             +DGK+KIST V  K+  +FQ +Y+ LL+AHM  L
Sbjct:    61 SDGKRKISTVVSTKEVIKFQMAYSNLLRAHMDGL 94

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04421	SRP14_ARATH	No assigned EC number	0.7	0.9836	0.9917	yes	no
O04433	SRP14_ORYSJ	No assigned EC number	0.6774	0.7622	0.7045	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_1420199	SubName- Full=Putative uncharacterized protein; (121 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II0401	hypothetical protein (104 aa)				•	•	•	•		0.688
	estExt_fgenesh4_pm.C_LG_V0536	SubName- Full=Putative uncharacterized protein; (104 aa)				•	•	•	•		0.677
	estExt_Genewise1_v1.C_LG_XV1107	hypothetical protein (137 aa)				•	•	•	•		0.537
	estExt_Genewise1_v1.C_LG_XII0668	hypothetical protein (137 aa)				•	•	•	•		0.528
	gw1.I.822.1	SubName- Full=Putative uncharacterized protein; (493 aa)						•	•		0.438
	gw1.XVI.3558.1	hypothetical protein (491 aa)						•	•		0.437

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam02290	91	pfam02290, SRP14, Signal recognition particle 14kD	2e-32

>gnl|CDD|216962 pfam02290, SRP14, Signal recognition particle 14kD protein

 Score =  108 bits (273), Expect = 2e-32
 Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 4  LQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMA-TAGEPVEYRCLIRATDG 62
          L  + FL ELT +F++ R KGSV++T KR    +K    K   +  E  EY CLIRATDG
Sbjct: 1  LSNEEFLTELTKLFQKARSKGSVYLTMKRYDGNTKPVPRKGEPSVSEGSEYSCLIRATDG 60

Query: 63 KQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
          K+KIST V A+D ++FQASY+ +LKA+M  L
Sbjct: 61 KKKISTVVSAEDLEKFQASYSEVLKANMDGL 91

The signal recognition particle (SRP) is a multimeric protein involved in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP14 and SRP9 form a complex essential for SRP RNA binding. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF02290	93	SRP14: Signal recognition particle 14kD protein; I	100.0
KOG1761	116	consensus Signal recognition particle, subunit Srp	100.0

>PF02290 SRP14: Signal recognition particle 14kD protein; InterPro: IPR003210 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=2.5e-41  Score=236.04  Aligned_cols=90  Identities=50%  Similarity=0.753  Sum_probs=68.0

Q ss_pred             CCchHHHHHHHHHHhhcCCCc-eEEEEEecCCCCCcccccccC-CCCCCCceeeEEEEeCCCc-eEEEEeccccHHHHHH
Q 033297            4 LQPDPFLNELTSMFERNRDKG-SVWVTFKRSSMKSKSQKNKMA-TAGEPVEYRCLIRATDGKQ-KISTTVGAKDHQRFQA   80 (122)
Q Consensus         4 L~ndeFL~~L~~Lf~~~~~~g-SV~lT~KR~~~~~~~~~~~~~-~~~~~~ey~~LiRAt~Gk~-KiSTvV~~~~l~~F~~   80 (122)
                      ||||+||++|++||+.++++| |||||||||++.+.+.+.... ...++.||+||||||||++ ||||+|+++||++||+
T Consensus         1 L~ndeFL~~L~~lf~~~~~k~gSV~lT~KR~~~~~k~~~~~~~~~~~~~~~~~~LiRAt~Gkk~KiSTvV~~~~l~~F~~   80 (93)
T PF02290_consen    1 LSNDEFLSELTKLFEKSKEKGGSVYLTQKRLDGKTKPKPKKQKPSSSEDKEYPCLIRATNGKKIKISTVVDPDDLDKFWQ   80 (93)
T ss_dssp             E-HHHHHHHHHHHHHHCSSSSS-EEEEEEEEEE-------------------EEEEEEESSSS-EEEEEEETTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccCCceEEEEEeecCCCCCCCCccccCCCCCCCCceEEEEEecCCCCeEEEEECHHHHHHHHH
Confidence            799999999999999999876 999999999887655444332 3345679999999999998 9999999999999999


Q ss_pred             HHHHHHHhhcccc
Q 033297           81 SYATLLKAHMAAL   93 (122)
Q Consensus        81 ~Y~~vlK~~M~~L   93 (122)
                      +|++|||+||+||
T Consensus        81 ~Y~~v~K~~M~~L   93 (93)
T PF02290_consen   81 SYANVLKAGMDGL   93 (93)
T ss_dssp             HHHHHHHHHCCTS
T ss_pred             HHHHHHHhhCcCC
Confidence            9999999999998

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 14 kDa SRP14 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0030942 endoplasmic reticulum signal peptide binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0005786 signal recognition particle, endoplasmic reticulum targeting; PDB: 1914_A 1RY1_D 1E8O_B 2W9J_B.

>KOG1761 consensus Signal recognition particle, subunit Srp14 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-39  Score=230.48  Aligned_cols=105  Identities=51%  Similarity=0.796  Sum_probs=96.8

Q ss_pred             CCCCchHHHHHHHHHHhhcCCCc--eEEEEEecCCCCCcccccccCCCC-CCCceeeEEEEeCCCceEEEEeccccHHHH
Q 033297            2 GLLQPDPFLNELTSMFERNRDKG--SVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRATDGKQKISTTVGAKDHQRF   78 (122)
Q Consensus         2 vlL~ndeFL~~L~~Lf~~~~~~g--SV~lT~KR~~~~~~~~~~~~~~~~-~~~ey~~LiRAt~Gk~KiSTvV~~~~l~~F   78 (122)
                      ++|++++||++|+.||+.++..|  |||||+|||++.+++.+.....+. ++.+|+|||||++|++||||||.++|+++|
T Consensus         1 ~~~~~~~Fl~~lt~~~q~~k~~g~~sv~it~k~~dgrtk~~p~kgs~~g~e~~e~~cLiRa~~G~kKiSTVV~akev~~F   80 (116)
T KOG1761|consen    1 MLLESEQFLTELTRLFQKSKIKGASSVYITLKRYDGRTKPVPKKGSVEGFEPSEYRCLIRATDGKKKISTVVKAKEVNKF   80 (116)
T ss_pred             CCccchHHHHHHHHHHHhhhhcCCcceEEEEeccCCCcccccccCCcCCCCCccceEEEEeccCCceEEEEEeHHHHHHH
Confidence            57899999999999999999888  999999999999998888777665 788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccccccccCCc
Q 033297           79 QASYATLLKAHMAALKKRERKDKKKGVD  106 (122)
Q Consensus        79 ~~~Y~~vlK~~M~~LkKrdKkk~K~k~~  106 (122)
                      |++|++||+++|+||+||+|++.++++.
T Consensus        81 ~~~YS~vlk~~M~~LkKr~kk~~kkk~~  108 (116)
T KOG1761|consen   81 QQSYSAVLKAQMDGLKKRKKKKSKKKTK  108 (116)
T ss_pred             HHHHHHHHHHHhhhhhhcccccccccce
Confidence            9999999999999999999988765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
1914_A	232	Signal Recognition Particle Alu Rna Binding Heterod		4e-16
1e8o_B	106	Core Of The Alu Domain Of The Mammalian Srp Length		2e-15

>pdb|1914|A Chain A, Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914 Length = 232

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
           M LL+ + FL ELT +F++ R  GSV++T               +  G EP E +CL+RA
Sbjct: 20  MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 79
Query: 60  TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
           TDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct: 80  TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 113

>pdb|1E8O|B Chain B, Core Of The Alu Domain Of The Mammalian Srp Length = 106

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 3  LLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRATD 61
          LL+ + FL ELT +F++ R  GSV++T                  G EP + +CL+RATD
Sbjct: 2  LLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATD 61
Query: 62 GKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
          GK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct: 62 GKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 93
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1e8o_B	106	SRP14, signal recognition particle 14 kDa protein;	2e-39
1914_A	232	Signal recognition particle 9/14 fusion protein; A	3e-37
2w9j_A	91	Signal recognition particle subunit SRP14; radiati	1e-19

>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D* Length = 106

 Score =  126 bits (318), Expect = 2e-39
 Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 3   LLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRATD 61
           LL+ + FL ELT +F++ R  GSV++T K+   ++K    K    G EP + +CL+RATD
Sbjct: 2   LLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATD 61

Query: 62  GKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKK 103
           GK+KIST V +K+  +FQ +Y+ LL+A+M  LKKR++K+K K
Sbjct: 62  GKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTK 103

>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C* Length = 232

 Score =  125 bits (314), Expect = 3e-37
 Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 1   MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
           M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K +  G EP E +CL+RA
Sbjct: 20  MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 79

Query: 60  TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKK 103
           TDGK+KIST V +K+  +FQ +Y+ LL+A+M  LKKR++K+K K
Sbjct: 80  TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKSK 123

>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe} Length = 91

 Score = 76.2 bits (187), Expect = 1e-19
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 3  LLQPDPFLNELTSMFE--RNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
          LL  + FL +LT + +  +++  GSV+++          QK      GE      LIRA 
Sbjct: 2  LLSNEEFLKKLTDLLQTHQSKGTGSVYLS----------QKXNPVDEGEGSSASVLIRAK 51

Query: 61 DGK-QKISTTVGAKDHQRFQASYATLLKAHMAALKKRERK 99
           G  +KIST V       F  SYA + K  +  LKKR+RK
Sbjct: 52 SGAAEKISTVVELDYFTDFFQSYAEVXKGQIVGLKKRDRK 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1e8o_B	106	SRP14, signal recognition particle 14 kDa protein;	100.0
1914_A	232	Signal recognition particle 9/14 fusion protein; A	100.0
2w9j_A	91	Signal recognition particle subunit SRP14; radiati	100.0

>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*

Probab=100.00  E-value=4.3e-49  Score=280.25  Aligned_cols=104  Identities=44%  Similarity=0.729  Sum_probs=74.3

Q ss_pred             CCCCchHHHHHHHHHHhhcCCCceEEEEEecCCCCCcccccccC-CCCCCCceeeEEEEeCCCceEEEEeccccHHHHHH
Q 033297            2 GLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMA-TAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQA   80 (122)
Q Consensus         2 vlL~ndeFL~~L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~-~~~~~~ey~~LiRAt~Gk~KiSTvV~~~~l~~F~~   80 (122)
                      ||||||+||++|++||+.++++||||||||||++.+.+.++... ...++.||+||||||||++||||||+++||++||+
T Consensus         1 vlL~nd~FL~~L~~Lf~~~k~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~~e~~cLiRAt~GkkKiSTvV~~~dl~~F~~   80 (106)
T 1e8o_B            1 VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQM   80 (106)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTCCEEEEEEEEC-------------------CEEEEEEESSSSEEEEEEETTTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCCccccCCCCCCCCCcEEEEeeCCCCCEEEEECHHHHHHHHH
Confidence            79999999999999999999999999999999998776655432 22345689999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccccccccccCC
Q 033297           81 SYATLLKAHMAALKKRERKDKKKGV  105 (122)
Q Consensus        81 ~Y~~vlK~~M~~LkKrdKkk~K~k~  105 (122)
                      +|++|||+||+||+||||+++|+++
T Consensus        81 ~Y~~v~K~~M~gLKkrdkkkkkk~~  105 (106)
T 1e8o_B           81 AYSNLLRANMDGLKKRDKKNKTKKT  105 (106)
T ss_dssp             HHHHHHHHHCCCCC-----------
T ss_pred             HHHHHHHhcccccCccccccccccC
Confidence            9999999999999999998887665

>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*

Probab=100.00  E-value=3.6e-45  Score=289.51  Aligned_cols=109  Identities=44%  Similarity=0.717  Sum_probs=82.1

Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCceEEEEEecCCCCCcccccccC-CCCCCCceeeEEEEeCCCceEEEEeccccHHHHH
Q 033297            1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMA-TAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQ   79 (122)
Q Consensus         1 MvlL~ndeFL~~L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~-~~~~~~ey~~LiRAt~Gk~KiSTvV~~~~l~~F~   79 (122)
                      ||||+||+||++|++||+.++++||||||||||++.+.+.++... ...++.+|+||||||||++||||||+|+||++||
T Consensus        20 MVlLsNdeFL~eLtkLf~~~k~~GSV~lT~KR~~~~~~~~p~k~~~~~~~~~e~~cLIRAT~GkkKiSTvV~~~dl~~F~   99 (232)
T 1914_A           20 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKRKISTVVSSKEVNKFQ   99 (232)
T ss_dssp             CCEECHHHHHHHHHHHHHHTSSSCCEEEEEEEEC------------CCCCCCCCEEEEEEESSSCEEEEEEETTSHHHHH
T ss_pred             eEEeCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCCcccCCCCCCCCCccEEEEEeCCCccEEEEECHHHHHHHH
Confidence            999999999999999999999999999999999988776655432 2335678999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccccccccCCcCCC
Q 033297           80 ASYATLLKAHMAALKKRERKDKKKGVDGDR  109 (122)
Q Consensus        80 ~~Y~~vlK~~M~~LkKrdKkk~K~k~~~~~  109 (122)
                      ++|++|||+||+|||||||+++|+++++.+
T Consensus       100 ~~Ya~VlKa~M~gLKKrdKKkkKk~~~~~k  129 (232)
T 1914_A          100 MAYSNLLRANMDGLKKRDKKNKSKKSKPAQ  129 (232)
T ss_dssp             HHHHHHHHHHSCCSBCC-----------CC
T ss_pred             HHHHHHHHhcccccCccccchhhhhhhhhh
Confidence            999999999999999999988876655554

>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-44  Score=250.89  Aligned_cols=88  Identities=36%  Similarity=0.532  Sum_probs=67.6

Q ss_pred             CCCCchHHHHHHHHHHhhcC--CCceEEEEEecCCCCCcccccccCCCCCCCceeeEEEEeCCCc-eEEEEeccccHHHH
Q 033297            2 GLLQPDPFLNELTSMFERNR--DKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQ-KISTTVGAKDHQRF   78 (122)
Q Consensus         2 vlL~ndeFL~~L~~Lf~~~~--~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~ey~~LiRAt~Gk~-KiSTvV~~~~l~~F   78 (122)
                      |+||||+||++|++||+.++  ++||||||||||++++.          .+.+||||||||+|++ ||||+|+|+||++|
T Consensus         1 vlL~nd~FL~~L~~lf~~~~~~~~gSV~lT~KR~~~~~~----------~~~~~pcLiRAt~gkK~KiSTvV~~~~l~~F   70 (91)
T 2w9j_A            1 MLLSNEEFLKKLTDLLQTHQSKGTGSVYLSQKXNPVDEG----------EGSSASVLIRAKSGAAEKISTVVELDYFTDF   70 (91)
T ss_dssp             CCBCHHHHHHHHHHHHHCC-------CCCEEEEEEECC---------------CEEEEEEECTTSCEEEEEEEGGGHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhcccCCCceEEEEEEecCCCcc----------CCCCCCEEEEEecCCCCEEEEEECHHHHHHH
Confidence            79999999999999999976  89999999999987764          1237889999999997 99999999999999


Q ss_pred             HHHHHHHHHhhcccccccccc
Q 033297           79 QASYATLLKAHMAALKKRERK   99 (122)
Q Consensus        79 ~~~Y~~vlK~~M~~LkKrdKk   99 (122)
                      |++|++|||+||+||+||||+
T Consensus        71 ~~~Y~~v~K~~M~~LKkrdkk   91 (91)
T 2w9j_A           71 FQSYAEVXKGQIVGLKKRDRK   91 (91)
T ss_dssp             HHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHhCCcccccCCCC
Confidence            999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1914a2	97	d.49.1.1 (A:2001-2097) Signal recognition particle	1e-37

>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14
superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14
family: Signal recognition particle alu RNA binding heterodimer, SRP9/14
domain: Signal recognition particle 14KDa protein, SRP14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (304), Expect = 1e-37
 Identities = 46/97 (47%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 1  MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
          M LL+ + FL ELT +F++ R  GSV++T K+   ++K    K +  G EP E +CL+RA
Sbjct: 1  MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60

Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKR 96
          TDGK+KIST V +K+  +FQ +Y+ LL+A+M  LKKR
Sbjct: 61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGLKKR 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1914a2	97	Signal recognition particle 14KDa protein, SRP14 {	100.0

>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14
superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14
family: Signal recognition particle alu RNA binding heterodimer, SRP9/14
domain: Signal recognition particle 14KDa protein, SRP14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-48  Score=269.94  Aligned_cols=96  Identities=47%  Similarity=0.761  Sum_probs=80.7

Q ss_pred             CCCCCchHHHHHHHHHHhhcCCCceEEEEEecCCCCCcccccccCC-CCCCCceeeEEEEeCCCceEEEEeccccHHHHH
Q 033297            1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMAT-AGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQ   79 (122)
Q Consensus         1 MvlL~ndeFL~~L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~~-~~~~~ey~~LiRAt~Gk~KiSTvV~~~~l~~F~   79 (122)
                      ||||+||+||++|++||+.++++||||||||||++.+.+.+..... ..++.||+||||||||++||||+|+++|+++||
T Consensus         1 MvlL~nd~FL~eLt~Lf~~~~~~gSV~vT~KR~~~~~kp~~~~~~~~~~~~~e~~cLiRAt~GkkKiSTvV~~~~~~~F~   80 (97)
T d1914a2           1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKRKISTVVSSKEVNKFQ   80 (97)
T ss_dssp             CCEECHHHHHHHHHHHHHHTSSSCCEEEEEEEEC------------CCCCCCCCEEEEEEESSSCEEEEEEETTSHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhcccCceEEEEEEecCCCcCCCCCCCCCCCCCCCcceEEEEecCCCeeEEEEECHHHHHHHH
Confidence            9999999999999999999999999999999999888776654432 335679999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccc
Q 033297           80 ASYATLLKAHMAALKKR   96 (122)
Q Consensus        80 ~~Y~~vlK~~M~~LkKr   96 (122)
                      ++|++|||+||+||+||
T Consensus        81 ~~Y~~v~Ka~M~gLkkr   97 (97)
T d1914a2          81 MAYSNLLRANMDGLKKR   97 (97)
T ss_dssp             HHHHHHHHHHSCCSBCC
T ss_pred             HHHHHHHHhhCccccCC
Confidence            99999999999999987