Citrus Sinensis ID: 033302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccHHcccccHHHHHHHEHEccccccccccccEEcccccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
MRASKFSAFSLLLAAIILAVHVasssssgvdfdglghqlgfipvksecrgsiaecmsvegddgdqeLDLEFAMDGEINRRILAMRrnsvpcsrrgasyyncraggqanpysrgcsaitrcrr
Flexible Loop (DISEMBL)
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRIlamrrnsvpcsrRGASyyncraggqanpysrgcsaitrcrr
Low Complexity Region (SEG)
MRaskfsafslllaaiilavhvasssssGVDFDGLGHQLGFIPVKSECRGSIAECMSVegddgdqeldleFAMDGEINRRILAMRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Disordered region (IsUnstruct)
*****FSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVE******ELDLEFAMDGEINRRILAMRRNSVPCSRRGASYYNCRAGGQ****************
Disordered Region (DISOPRED)
******S**SLLLAAIILAVHVASS**********GH*LGFIPV*SECRGSIAECMSVEGD********************LAMRRNSVPCSRRGA************PYSRGCSAITRCR*
Disordered Region (DISEMBL)
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Disordered Region (DISPRO)
*****FSAFSLLLAAIILAVHVASSS***VDFDGLGHQLGFIPVKSECRGSIAECMSVE************AMDGEINRRILAMRRNSVPCSRRGASYYNCRAGGQANP*SRGCSAIT*CRR
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q8L9P8	116	Protein RALF-like 33 OS=A	yes	no	0.844	0.887	0.496	1e-25
Q9LUS7	138	Rapid alkalinization fact	no	no	0.868	0.768	0.560	1e-24
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.827	0.841	0.465	1e-21
Q945T0	115	Rapid alkalinization fact	N/A	no	0.778	0.826	0.475	1e-17
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.409	0.420	0.711	1e-16
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.483	0.536	0.506	8e-13
Q9FZA0	110	Protein RALF-like 4 OS=Ar	no	no	0.549	0.609	0.474	1e-11
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.475	0.513	0.473	5e-10
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.385	0.398	0.534	7e-09
Q9FHA6	129	Protein RALF-like 34 OS=A	no	no	0.5	0.472	0.467	5e-08

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 81/135 (60%), Gaps = 32/135 (23%)

Query: 1   MRASKFSAFSLLLAAIILAVH----VASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECM 56
           MR       ++++A  IL VH      +S SSG           F+P++S+C G+IAEC 
Sbjct: 1   MRGLSTKPVAIIIA--ILTVHFLFAAVTSQSSG----------DFVPIESKCNGTIAECS 48

Query: 57  SVEGDDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQA 107
               ++       EF MD EINRRILA         +RRN+VPCSRRGASYYNCR G QA
Sbjct: 49  LSTAEE-------EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 101

Query: 108 NPYSRGCSAITRCRR 122
           NPYSRGCSAITRCRR
Sbjct: 102 NPYSRGCSAITRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 85/132 (64%), Gaps = 26/132 (19%)

Query: 9   FSLLLAAIILAVHVASS--SSSGVDFDGLGHQLGFIPVKSECRGSIAECM--SVEGDDGD 64
           F++LL   ILAVH  S   SS   +F G      F P ++ECRG+IAEC   +  GD GD
Sbjct: 14  FAILL---ILAVHNWSVAVSSQSTEFAG-----DFPPFETECRGTIAECSVSAALGDGGD 65

Query: 65  -----QELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPY 110
                 E+  EF MD EINRRILA         +RRN++PCSRRGASYYNCR G QANPY
Sbjct: 66  LFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPY 125

Query: 111 SRGCSAITRCRR 122
           SRGCSAITRCRR
Sbjct: 126 SRGCSAITRCRR 137

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 72/129 (55%), Gaps = 28/129 (21%)

Query: 8   AFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSE------CRGSIAECMSVEGD 61
           +F+L L   IL V + SS        G  + LG +   +       C GSIAEC+  E +
Sbjct: 4   SFTLFLTLTILVVFIISSPPVQA---GFANDLGGVAWATTGDNGSGCHGSIAECIGAEEE 60

Query: 62  DGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSR 112
           +          MD EINRRILA         ++RNSVPCSRRGASYYNC+ G QANPYSR
Sbjct: 61  E----------MDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSR 110

Query: 113 GCSAITRCR 121
           GCS I RCR
Sbjct: 111 GCSKIARCR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 77/124 (62%), Gaps = 29/124 (23%)

Query: 11  LLLAAIILA--VHVASSSSSGVDFDGLGHQLGFIPVKSE--CRGSIAECMSVEGDDGDQE 66
           L+L  +I A  + +A++  SG  +D +      +P +S   C+GSI EC++ E       
Sbjct: 7   LILCVLIGAFFISMAAAGDSGA-YDWV------MPARSGGGCKGSIGECIAEE------- 52

Query: 67  LDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAI 117
              EF +D E NRRILA         +++NSVPCSRRGASYYNC+ G QANPYSRGCSAI
Sbjct: 53  --EEFELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAI 110

Query: 118 TRCR 121
           TRCR
Sbjct: 111 TRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 45/59 (76%), Gaps = 9/59 (15%)

Query: 73  MDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
            D +I+RRILA         MRRNSVPCSRRGASYYNC+ G QANPYSRGCS ITRCRR
Sbjct: 61  FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 14/73 (19%)

Query: 60  GDDGDQELDLEFAMDGEINRRILA----------MRRNSVPCSRRGASYYNCRAGGQANP 109
           G+DG+    L++ MD E NRR LA          +R+N+VPCSRRG SYY+C+   +ANP
Sbjct: 39  GEDGE----LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANP 94

Query: 110 YSRGCSAITRCRR 122
           Y RGCS IT C R
Sbjct: 95  YRRGCSVITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 11/78 (14%)

Query: 55  CMSVEGDDGDQELDLEFAMDGEINRRILA----------MRRNSVPCSRRGASYYNCRAG 104
           C++ +G  G+ + +LE  MD E NRR LA          +++N+VPCSRRG SYY+C+  
Sbjct: 31  CINGQGCIGEDD-ELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKR 89

Query: 105 GQANPYSRGCSAITRCRR 122
            + NPY RGCSAIT C R
Sbjct: 90  RRNNPYRRGCSAITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 18/76 (23%)

Query: 57  SVEGDDGDQELDLEFAMDGEINRRIL----------AMRRNSVPCSRRGASYYNCRAGGQ 106
           S+ G+D D        M  EI+RR+L           +RR+ VPC + GASYY+CR+ GQ
Sbjct: 39  SIIGEDED-------LMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRS-GQ 90

Query: 107 ANPYSRGCSAITRCRR 122
           AN YSRGC  ITRC R
Sbjct: 91  ANSYSRGCDTITRCAR 106

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 11/58 (18%)

Query: 75  GEINRRILAMR----------RNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
            EI+RR++ MR          R+ VPC + GASYY CR+G QAN Y+RGCS ITRC R
Sbjct: 55  SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 43/77 (55%), Gaps = 16/77 (20%)

Query: 62  DGDQELDLEFAMDGEINRRILAMRR------------NSVPCS-RRGASYY--NC-RAGG 105
           DG++  ++    DG  +RR L  RR            N VPC  R G SYY  NC RA G
Sbjct: 53  DGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARG 112

Query: 106 QANPYSRGCSAITRCRR 122
             +PYSRGCS+ITRCRR
Sbjct: 113 PVHPYSRGCSSITRCRR 129

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
154269428	126	rapid alkalinization factor precursor [L	0.959	0.928	0.656	3e-40
356521855	118	PREDICTED: uncharacterized protein LOC10	0.893	0.923	0.610	1e-31
356564045	120	PREDICTED: uncharacterized protein LOC10	0.885	0.9	0.589	4e-31
297736875	152	unnamed protein product [Vitis vinifera]	0.844	0.677	0.598	2e-29
147862659	118	hypothetical protein VITISV_037723 [Viti	0.844	0.872	0.598	4e-29
225432308	118	PREDICTED: uncharacterized protein LOC10	0.844	0.872	0.598	4e-29
357478769	139	Rapid alkalinization factor [Medicago tr	0.877	0.769	0.598	3e-28
388490514	126	unknown [Medicago truncatula]	0.885	0.857	0.593	7e-28
255551741	117	RALFL33, putative [Ricinus communis] gi|	0.803	0.837	0.611	9e-28
118489125	112	unknown [Populus trichocarpa x Populus d	0.836	0.910	0.561	4e-27

>gi|154269428|gb|ABS72341.1| rapid alkalinization factor precursor [Litchi chinensis]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 97/131 (74%), Gaps = 14/131 (10%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           MR S  S   L+++A+ILAVHVA S+SS VDF+  GHQ GF P+K EC GSI EC +V  
Sbjct: 1   MRTSNLSGLVLVISAVILAVHVAVSASSAVDFNA-GHQFGFFPMKPECSGSIGECATV-- 57

Query: 61  DDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYS 111
             GD+ELDLEF MD E NRRILA         +RRNSVPCSRRGASYYNC+ G QANPYS
Sbjct: 58  --GDEELDLEFEMDSESNRRILATSQYISYGALRRNSVPCSRRGASYYNCQTGAQANPYS 115

Query: 112 RGCSAITRCRR 122
           RGCSAITRCRR
Sbjct: 116 RGCSAITRCRR 126

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521855|ref|XP_003529566.1| PREDICTED: uncharacterized protein LOC100780330 [Glycine max]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 89/131 (67%), Gaps = 22/131 (16%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           M +S F AF LL A  ILAVHVA SSSS +D D       F+P+KS CRGS+AEC  + G
Sbjct: 1   MGSSTFCAFFLLCA--ILAVHVAQSSSSTLDLDAF-----FLPLKSGCRGSVAECSLLAG 53

Query: 61  DDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYS 111
           DD       EF M+ E NRRILA         +RRN+VPCSRRGASYYNCR G QANPYS
Sbjct: 54  DDA------EFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYS 107

Query: 112 RGCSAITRCRR 122
           RGCSAITRCRR
Sbjct: 108 RGCSAITRCRR 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564045|ref|XP_003550267.1| PREDICTED: uncharacterized protein LOC100775931 [Glycine max]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 87/129 (67%), Gaps = 21/129 (16%)

Query: 3   ASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDD 62
           ++ F AF   L   IL+VHVA SSSS +D D       F+P+KS CRGS+AEC  + GDD
Sbjct: 4   STTFCAF--FLVCTILSVHVAQSSSSTLDLDTF-----FLPLKSGCRGSVAECSLLAGDD 56

Query: 63  GDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRG 113
                D EF M+ E NRRILA         +RRN+VPCSRRGASYYNCR G QANPYSRG
Sbjct: 57  -----DTEFLMESESNRRILAGRSYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 111

Query: 114 CSAITRCRR 122
           CSAITRCRR
Sbjct: 112 CSAITRCRR 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736875|emb|CBI26076.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/127 (59%), Positives = 88/127 (69%), Gaps = 24/127 (18%)

Query: 7   SAFSLLLAAIILAVHVASSSSSGVDFDG--LGHQLGFIPVKSECRGSIAECMSVEGDDGD 64
           SAF L+ A  I+AVH+  +SS+ VDF G  L  QLG+IP +S C+GSIAEC++ E     
Sbjct: 39  SAFVLICA--IMAVHMVLTSSA-VDFSGDHLQFQLGWIPARSACQGSIAECLAGE----- 90

Query: 65  QELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCS 115
                EF MD EINRRILA         + RNSVPCSRRGASYYNCR G QANPY+RGCS
Sbjct: 91  -----EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCS 145

Query: 116 AITRCRR 122
           AITRCRR
Sbjct: 146 AITRCRR 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862659|emb|CAN83593.1| hypothetical protein VITISV_037723 [Vitis vinifera]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/127 (59%), Positives = 88/127 (69%), Gaps = 24/127 (18%)

Query: 7   SAFSLLLAAIILAVHVASSSSSGVDFDG--LGHQLGFIPVKSECRGSIAECMSVEGDDGD 64
           SAF L+ A  I+AVH+  +SS+ VDF G  L  QLG+IP +S C+GSIAEC++ E     
Sbjct: 5   SAFVLICA--IMAVHMVLTSSA-VDFSGDHLQFQLGWIPARSACQGSIAECLAGE----- 56

Query: 65  QELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCS 115
                EF MD EINRRILA         + RNSVPCSRRGASYYNCR G QANPY+RGCS
Sbjct: 57  -----EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCS 111

Query: 116 AITRCRR 122
           AITRCRR
Sbjct: 112 AITRCRR 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432308|ref|XP_002273386.1| PREDICTED: uncharacterized protein LOC100261311 [Vitis vinifera]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/127 (59%), Positives = 88/127 (69%), Gaps = 24/127 (18%)

Query: 7   SAFSLLLAAIILAVHVASSSSSGVDFDG--LGHQLGFIPVKSECRGSIAECMSVEGDDGD 64
           SAF L+ A  I+AVH+  +SS+ VDF G  L  QLG+IP +S C+GSIAEC++ E     
Sbjct: 5   SAFVLICA--IMAVHMVLTSSA-VDFSGDHLQFQLGWIPARSACQGSIAECLAGE----- 56

Query: 65  QELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCS 115
                EF MD EINRRILA         + RNSVPCSRRGASYYNCR G QANPY+RGCS
Sbjct: 57  -----EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCS 111

Query: 116 AITRCRR 122
           AITRCRR
Sbjct: 112 AITRCRR 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478769|ref|XP_003609670.1| Rapid alkalinization factor [Medicago truncatula] gi|355510725|gb|AES91867.1| Rapid alkalinization factor [Medicago truncatula]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 81/122 (66%), Gaps = 15/122 (12%)

Query: 9   FSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELD 68
           F LL +  ILA+HVA SSSS +DF        F+P  S CRGSIAEC  + GD+ D E  
Sbjct: 10  FFLLFS--ILALHVALSSSSTLDFTDNQLSSFFLPSDSGCRGSIAECSLLAGDEDDSE-- 65

Query: 69  LEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITR 119
             F MD E NRRILA         +RRN+VPCSRRGASYYNCR G QANPY RGCSAITR
Sbjct: 66  --FMMDSESNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITR 123

Query: 120 CR 121
           CR
Sbjct: 124 CR 125

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490514|gb|AFK33323.1| unknown [Medicago truncatula]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 81/123 (65%), Gaps = 15/123 (12%)

Query: 9   FSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELD 68
           F LL +  ILA+HVA SSSS +DF        F+P  S CRGSIA C  + GD+ D E  
Sbjct: 10  FFLLFS--ILALHVALSSSSTLDFTDNQLSSFFLPSDSGCRGSIAGCSLLAGDEDDSE-- 65

Query: 69  LEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITR 119
             F MD E NRRILA         +RRN+VPCSRRGASYYNCR G QANPY RGCSAITR
Sbjct: 66  --FMMDSESNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITR 123

Query: 120 CRR 122
           CRR
Sbjct: 124 CRR 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551741|ref|XP_002516916.1| RALFL33, putative [Ricinus communis] gi|223544004|gb|EEF45530.1| RALFL33, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 85/121 (70%), Gaps = 23/121 (19%)

Query: 11  LLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSE-CRGSIAECMSVEGDDGDQELDL 69
           LLL + ILAVHVA SSS+    D       F+P++S  CRGSIAEC+ + G+D     DL
Sbjct: 9   LLLISAILAVHVAVSSSTKSPVD-------FLPMESGGCRGSIAECL-MSGED-----DL 55

Query: 70  EFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 120
           EFAMD EINRRILA         +RRN+VPCSRRGASYYNCR G QANPYSRGC+ ITRC
Sbjct: 56  EFAMDTEINRRILATNKYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCNRITRC 115

Query: 121 R 121
           R
Sbjct: 116 R 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489125|gb|ABK96369.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 82/130 (63%), Gaps = 28/130 (21%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           M  SKF  F  LL +++LAV V+ SSS+ VDF  L          SECRGSIAEC+    
Sbjct: 1   MTTSKFYIF--LLLSVVLAVRVSLSSSTAVDFLPLESS-------SECRGSIAECL---- 47

Query: 61  DDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYS 111
                 +D EF MD E NRRILA         +RRN+VPCSRRGASYYNCR G QANPYS
Sbjct: 48  ------MDEEFGMDTESNRRILATSRYVSYGALRRNTVPCSRRGASYYNCRPGAQANPYS 101

Query: 112 RGCSAITRCR 121
           RGCS ITRCR
Sbjct: 102 RGCSRITRCR 111

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.614	0.646	0.604	4.8e-23
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.672	0.594	0.571	1.5e-21
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.680	0.697	0.533	1.7e-18
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.581	0.617	0.538	3.6e-18
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.540	0.55	0.576	9.5e-18
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.426	0.472	0.548	8.2e-12
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.409	0.454	0.533	4.5e-11
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.401	0.415	0.533	2e-10
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.401	0.433	0.533	2e-10
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.327	0.310	0.636	1.2e-08

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 55/91 (60%), Positives = 62/91 (68%)

Query:    41 FIPVKSECRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILA---------MRRNSVPC 91
             F+P++S+C G+IAEC               F MD EINRRILA         +RRN+VPC
Sbjct:    33 FVPIESKCNGTIAEC-------SLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPC 85

Query:    92 SRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
             SRRGASYYNCR G QANPYSRGCSAITRCRR
Sbjct:    86 SRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 56/98 (57%), Positives = 63/98 (64%)

Query:    41 FIPVKSECRGSIAEC-MSVXXXXXXXXXXXX------FAMDGEINRRILA---------M 84
             F P ++ECRG+IAEC +S                   F MD EINRRILA         +
Sbjct:    40 FPPFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGAL 99

Query:    85 RRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
             RRN++PCSRRGASYYNCR G QANPYSRGCSAITRCRR
Sbjct:   100 RRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 55/103 (53%), Positives = 62/103 (60%)

Query:    31 DF-DGLGH-QLGFIPVKSECRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILA----- 83
             DF D L   + G   + S C GSIAEC++                D +I+RRILA     
Sbjct:    26 DFGDSLDFVRAGSSSLFSGCTGSIAECIA---------EEEEMEFDSDISRRILAQKKYI 76

Query:    84 ----MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
                 MRRNSVPCSRRGASYYNC+ G QANPYSRGCS ITRCRR
Sbjct:    77 SYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 49/91 (53%), Positives = 59/91 (64%)

Query:    42 IPVKSE--CRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILA---------MRRNSVP 90
             +P +S   C+GSI EC++             F +D E NRRILA         +++NSVP
Sbjct:    33 MPARSGGGCKGSIGECIA---------EEEEFELDSESNRRILATKKYISYGALQKNSVP 83

Query:    91 CSRRGASYYNCRAGGQANPYSRGCSAITRCR 121
             CSRRGASYYNC+ G QANPYSRGCSAITRCR
Sbjct:    84 CSRRGASYYNCKPGAQANPYSRGCSAITRCR 114

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 49/85 (57%), Positives = 53/85 (62%)

Query:    46 SECRGSIAECMSVXXXXXXXXXXXXFAMDGEINRRILA---------MRRNSVPCSRRGA 96
             S C GSIAEC+                MD EINRRILA         ++RNSVPCSRRGA
Sbjct:    45 SGCHGSIAECIGAEEEE----------MDSEINRRILATTKYISYQSLKRNSVPCSRRGA 94

Query:    97 SYYNCRAGGQANPYSRGCSAITRCR 121
             SYYNC+ G QANPYSRGCS I RCR
Sbjct:    95 SYYNCQNGAQANPYSRGCSKIARCR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 34/62 (54%), Positives = 39/62 (62%)

Query:    71 FAMDGEINRRILAMRR----------NSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 120
             + MD E NRR LA RR          N+VPCSRRG SYY+C+   +ANPY RGCS IT C
Sbjct:    46 YLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105

Query:   121 RR 122
              R
Sbjct:   106 YR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query:    73 MDGEINRRILA----------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
             MD E NRR LA          +++N+VPCSRRG SYY+C+   + NPY RGCSAIT C R
Sbjct:    48 MDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query:    73 MDGEINRRILAMR----------RNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
             M  EI+RR++ MR          R+ VPC + GASYY CR+G QAN Y+RGCS ITRC R
Sbjct:    53 MPSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query:    73 MDGEINRRIL----------AMRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
             M  EI+RR+L           +RR+ VPC + GASYY+CR+G QAN YSRGC  ITRC R
Sbjct:    48 MPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRCAR 106

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/44 (63%), Positives = 31/44 (70%)

Query:    83 AMRRNSVPCS-RRGASYY--NC-RAGGQANPYSRGCSAITRCRR 122
             A+  N VPC  R G SYY  NC RA G  +PYSRGCS+ITRCRR
Sbjct:    86 ALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9P8	RLF33_ARATH	No assigned EC number	0.4962	0.8442	0.8879	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019778001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (118 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	1e-33
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	7e-32
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	3e-23

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score =  113 bits (284), Expect = 1e-33
 Identities = 73/133 (54%), Positives = 86/133 (64%), Gaps = 23/133 (17%)

Query: 8   AFSLLLAAIILAVHVASS--SSSGVDFDGLGHQLGFIPVKSECRGSIAECM--SVEGDDG 63
           A ++    +ILAVH  S   SS  ++F G      F P ++ECRG+IAEC   +  GDDG
Sbjct: 10  AAAIFAILLILAVHFWSVAVSSQSIEFAG-----DFPPFETECRGTIAECSVSAALGDDG 64

Query: 64  D-----QELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANP 109
           D      E+  EF MD EINRRILA         +RRN++PCSRRGASYYNCR G QANP
Sbjct: 65  DLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANP 124

Query: 110 YSRGCSAITRCRR 122
           YSRGCSAITRCRR
Sbjct: 125 YSRGCSAITRCRR 137

Length = 137

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score =  108 bits (271), Expect = 7e-32
 Identities = 63/131 (48%), Positives = 79/131 (60%), Gaps = 21/131 (16%)

Query: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60
           MR       ++++A + +    A+ +S    F G      F+P+ S+C G+IAEC     
Sbjct: 1   MRGLSTKPGAIIIAILTVHFLFAAVTSQSTGFSG-----DFMPIDSKCNGTIAECSLSTA 55

Query: 61  DDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYS 111
           ++       EF MD EINRRILA         +RRN+VPCSRRGASYYNCR G QANPYS
Sbjct: 56  EE-------EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYS 108

Query: 112 RGCSAITRCRR 122
           RGCSAITRCRR
Sbjct: 109 RGCSAITRCRR 119

Length = 119

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 84.8 bits (210), Expect = 3e-23
 Identities = 40/62 (64%), Positives = 43/62 (69%), Gaps = 9/62 (14%)

Query: 70  EFAMDGEINRRIL---------AMRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 120
              MD    RR+L         A+RRNSVPCSRRGASYYNC+ G  ANPYSRGCSAITRC
Sbjct: 5   LVVMDSPAGRRVLAARRYISYGALRRNSVPCSRRGASYYNCKPGAPANPYSRGCSAITRC 64

Query: 121 RR 122
           RR
Sbjct: 65  RR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.89
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.16

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=3.3e-36  Score=227.39  Aligned_cols=86  Identities=70%  Similarity=1.217  Sum_probs=75.1

Q ss_pred             ccccccccCCCcccchhhhhcccC--CCCc---hhhh--hhhhccccccchhhh---------cccCCCCCCCCCCCCcC
Q 033302           37 HQLGFIPVKSECRGSIAECMSVEG--DDGD---QELD--LEFAMDGEINRRILA---------MRRNSVPCSRRGASYYN  100 (122)
Q Consensus        37 ~~~~~~~~~~~C~Gsv~EC~~~~~--~~~d---~~~e--eE~~m~Se~~RR~La---------L~rd~vPC~~rG~sYyn  100 (122)
                      ++++|.++...|+|+++||++..+  +|+|   +++|  +|++||||++||+|+         |++|+|||+++|+||||
T Consensus        36 ~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYyn  115 (137)
T PLN03221         36 FAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYN  115 (137)
T ss_pred             ccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCccc
Confidence            344677777889999999996543  6777   4444  499999999999995         99999999999999999


Q ss_pred             CCCCCCCCCCCCCCcccccccC
Q 033302          101 CRAGGQANPYSRGCSAITRCRR  122 (122)
Q Consensus       101 C~p~~~aNPY~RGCs~itRCrr  122 (122)
                      |++++|+|||+|||++||||||
T Consensus       116 C~~~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221        116 CRRGAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             cCCCCCCCCCCCCcccccccCC
Confidence            9999999999999999999997

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=4.9e-35  Score=217.02  Aligned_cols=76  Identities=74%  Similarity=1.322  Sum_probs=69.3

Q ss_pred             cccccCCCcccchhhhhcccCCCCchhhhhhhhccccccchhhh---------cccCCCCCCCCCCCCcCCCCCCCCCCC
Q 033302           40 GFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPY  110 (122)
Q Consensus        40 ~~~~~~~~C~Gsv~EC~~~~~~~~d~~~eeE~~m~Se~~RR~La---------L~rd~vPC~~rG~sYynC~p~~~aNPY  110 (122)
                      +|.+....|+|+++||++.       ++|+||+|+||++||+|+         |++|+|||+++|+|||||++++|+|||
T Consensus        35 ~~~~~~~~C~Gsi~EC~~~-------~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~~ANPY  107 (119)
T PLN03222         35 DFMPIDSKCNGTIAECSLS-------TAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPY  107 (119)
T ss_pred             cccCCCCcCCCCHHHhhcc-------cccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCCccccCCCCCCCCC
Confidence            6677777899999999973       235799999999999995         999999999999999999999999999


Q ss_pred             CCCCcccccccC
Q 033302          111 SRGCSAITRCRR  122 (122)
Q Consensus       111 ~RGCs~itRCrr  122 (122)
                      +|||++||||||
T Consensus       108 ~RGCs~ITrCrR  119 (119)
T PLN03222        108 SRGCSAITRCRR  119 (119)
T ss_pred             CCCchhhccccC
Confidence            999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.89  E-value=5.8e-24  Score=143.24  Aligned_cols=56  Identities=64%  Similarity=1.136  Sum_probs=52.9

Q ss_pred             hhhhhhccccccchhhh---------cccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcccccccC
Q 033302           67 LDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR  122 (122)
Q Consensus        67 ~eeE~~m~Se~~RR~La---------L~rd~vPC~~rG~sYynC~p~~~aNPY~RGCs~itRCrr  122 (122)
                      +|+|++|+|+++||+|+         |++|++||+++|.+||||.+++|+|||+|||++||||||
T Consensus         2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence            36789999999999995         999999999999999999988999999999999999997

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.16  E-value=0.43  Score=34.13  Aligned_cols=24  Identities=29%  Similarity=0.200  Sum_probs=11.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHhc
Q 033302            1 MRASKFSAFSLLLAAIILAVHVASS   25 (122)
Q Consensus         1 m~~~~~~~~~~~~~~~~l~~~~~~~   25 (122)
                      |. +|...|+.+++|++|||...++
T Consensus         1 Ma-SK~~llL~l~LA~lLlisSeva   24 (95)
T PF07172_consen    1 MA-SKAFLLLGLLLAALLLISSEVA   24 (95)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence            66 4443444444444555544333

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00