Citrus Sinensis ID: 033305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHcccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcc
Coil and Loop (DISEMBL)
MINLNNMRVYVILSNAYAAARRWKDTARLRVSVrnkgmkktpacswteikshpyRLRINEALKDLFERMeqegyvpttkeALHDVEDEQKKNLLHYHSGRFAIVFgaistpdgrtiRLINNL
Flexible Loop (DISEMBL)
MINLNNMRVYVILSNAYAAARRWKDTArlrvsvrnkgmkktpacswteikshpyrlRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVfgaistpdgrTIRLINNL
Low Complexity Region (SEG)
MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL
Disordered region (IsUnstruct)
****NNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPT************KKNLLHYHSGRFAIVFGAISTPDGRTIRL****
Disordered Region (DISOPRED)
MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL
Disordered Region (DISEMBL)
MINLNNMRVYVILSNAYAAARRWKDTARLRVSVR********ACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL
Disordered Region (DISPRO)
***LNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q9LW63	715	Putative pentatricopeptid	yes	no	0.991	0.169	0.462	5e-29
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.926	0.132	0.451	1e-25
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.959	0.149	0.429	5e-24
Q9FHF9	697	Pentatricopeptide repeat-	no	no	0.926	0.162	0.434	1e-23
O23169	691	Pentatricopeptide repeat-	no	no	0.991	0.175	0.416	3e-23
Q9SR82	685	Putative pentatricopeptid	no	no	0.926	0.164	0.419	2e-21
Q9LNU6	760	Pentatricopeptide repeat-	no	no	0.959	0.153	0.367	9e-21
Q9SHZ8	786	Pentatricopeptide repeat-	no	no	0.959	0.148	0.367	2e-20
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.926	0.126	0.387	2e-20
Q9FRI5	790	Pentatricopeptide repeat-	no	no	0.926	0.143	0.408	4e-20

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 84/132 (63%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++  NM  YV++ N YA+  RWK+ A+LR+ +R KG++K PACSW E+K           
Sbjct: 541 VDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHP   +INE LK + E+ME+EGYV  T   LHDV++E K+ LL  HS R A+ FG I+T
Sbjct: 601 SHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINT 660

Query: 111 PDGRTIRLINNL 122
             G TIR+  N+
Sbjct: 661 EPGTTIRVTKNI 672

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 11/124 (8%)

Query: 10  YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
           Y +LSN YA A RWKD  R+R  +R+KG+KK P CSW E            K+HP+   I
Sbjct: 684 YTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743

Query: 59  NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
            + L D  +R++  GYVP T  ALHDV+DE+K +LL  HS + A+ +G ++TP G  IR+
Sbjct: 744 YQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRI 803

Query: 119 INNL 122
             NL
Sbjct: 804 TKNL 807

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 79/128 (61%), Gaps = 11/128 (8%)

Query: 6   NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HPY 54
           N  +YV+LSN YA++ RW D  +LRV +R+KG+KK P  SW EI++           HP 
Sbjct: 611 NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670

Query: 55  RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
           +  I   L++L  RM++ GYV  T   LHDVE+E+K+ ++ YHS R A+ +G +    GR
Sbjct: 671 KDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGR 730

Query: 115 TIRLINNL 122
            IR+I NL
Sbjct: 731 PIRVIKNL 738

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 9/122 (7%)

Query: 10  YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS---------HPYRLRINE 60
           YV+LSN YA+A RW + ++LRV ++  G+ K P  SW  I+           P+  RI E
Sbjct: 533 YVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCSRIYE 592

Query: 61  ALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLIN 120
            L+ L E++++ GY P  + ALHDVEDEQK+ +L YHS R AI FG I+T +G  + ++ 
Sbjct: 593 KLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMK 652

Query: 121 NL 122
           NL
Sbjct: 653 NL 654

Arabidopsis thaliana (taxid: 3702)

>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           I   N   YV ++N YAAA +W++  ++R  ++  G+ K P  SWTEIK           
Sbjct: 517 IEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADT 576

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHP   +I E L++L ++M++EGYVP T   LHDVEDEQK+  L YHS + A+ F  +ST
Sbjct: 577 SHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILST 636

Query: 111 PDGRTIRLINNL 122
            +G  I++  NL
Sbjct: 637 EEGTAIKVFKNL 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 11/124 (8%)

Query: 10  YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
           YV LSN Y+   RW + A +R  +  KGMKK P  SW E+           KSHP   +I
Sbjct: 519 YVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKI 578

Query: 59  NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
              L+DL   M   G+VPTT+    DVE+E+K+ +L YHS + A+  G IST  G+ IR+
Sbjct: 579 YAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRV 638

Query: 119 INNL 122
           + NL
Sbjct: 639 VKNL 642

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 11/128 (8%)

Query: 6   NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
           N   YV+LSN YAA   W +   +R  + + G+KK P CSW ++K           SHP 
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649

Query: 55  RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
             +I E + ++ + M + G+ P    ALHDVE+++++ +L  HS + A+VFG ++TPDG 
Sbjct: 650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709

Query: 115 TIRLINNL 122
            +++I NL
Sbjct: 710 PLQVIKNL 717

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 11/128 (8%)

Query: 6   NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
           N   Y  L+N Y+A  +W++ A++R S+++  +KK    SW E+K           +HP 
Sbjct: 616 NSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPE 675

Query: 55  RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
           +  I   +K +++ +++ GYVP T   LHD+E+E K+ +L +HS + AI FG ISTPD  
Sbjct: 676 KNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKT 735

Query: 115 TIRLINNL 122
           T+R++ NL
Sbjct: 736 TLRIMKNL 743

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 11/124 (8%)

Query: 10  YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE-----------IKSHPYRLRI 58
           YV+L+N Y++A  W     +R +++ +G++K P CSW E             SHP   ++
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783

Query: 59  NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
           +  L+ L+ERM +EGYVP T   LH+VE+++K+ LL  HS + AI FG ++T  G  IR+
Sbjct: 784 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 843

Query: 119 INNL 122
             NL
Sbjct: 844 AKNL 847

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 12/125 (9%)

Query: 10  YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
           Y++LSN +AA  +W++ AR+R  +R++G+KK  ACSW E++           SHP    +
Sbjct: 623 YMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAV 682

Query: 59  NEALKDLFERMEQEGYVPTTKEALHDVE-DEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
              L+DL + M + GYVP T   LHDVE D  K+++L  HS + A+ FG +  P G TIR
Sbjct: 683 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 742

Query: 118 LINNL 122
           +  NL
Sbjct: 743 IFKNL 747

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
296085848	644	unnamed protein product [Vitis vinifera]	0.991	0.187	0.583	2e-35
359481040	709	PREDICTED: putative pentatricopeptide re	0.991	0.170	0.583	2e-35
147780302	679	hypothetical protein VITISV_032008 [Viti	0.991	0.178	0.583	2e-35
357521373	701	Pentatricopeptide repeat-containing prot	0.991	0.172	0.537	9e-34
356511287	674	PREDICTED: putative pentatricopeptide re	1.0	0.181	0.533	2e-33
449433569	705	PREDICTED: putative pentatricopeptide re	0.991	0.171	0.522	2e-31
449508565	712	PREDICTED: LOW QUALITY PROTEIN: putative	0.991	0.169	0.522	3e-31
307136183	773	hypothetical protein [Cucumis melo subsp	0.991	0.156	0.507	1e-30
297831082	679	pentatricopeptide repeat-containing prot	0.991	0.178	0.484	3e-28
22093801	643	selenium-binding protein-like [Oryza sat	0.959	0.181	0.5	2e-27

>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 92/132 (69%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++  N+  YV+LSN Y+AA RWKD  +LR+++R+KGMKK PACSW EIK           
Sbjct: 470 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 529

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHPY  RINEALK L E+ME+EGYV  T E LHDVE+EQK+ LL  HS R AI FG IST
Sbjct: 530 SHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIST 589

Query: 111 PDGRTIRLINNL 122
           P G TIR+  NL
Sbjct: 590 PAGTTIRVTKNL 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 92/132 (69%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++  N+  YV+LSN Y+AA RWKD  +LR+++R+KGMKK PACSW EIK           
Sbjct: 535 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 594

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHPY  RINEALK L E+ME+EGYV  T E LHDVE+EQK+ LL  HS R AI FG IST
Sbjct: 595 SHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIST 654

Query: 111 PDGRTIRLINNL 122
           P G TIR+  NL
Sbjct: 655 PAGTTIRVTKNL 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 92/132 (69%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++  N+  YV+LSN Y+AA RWKD  +LR+++R+KGMKK PACSW EIK           
Sbjct: 495 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 554

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHPY  RINEALK L E+ME+EGYV  T E LHDVE+EQK+ LL  HS R AI FG IST
Sbjct: 555 SHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIST 614

Query: 111 PDGRTIRLINNL 122
           P G TIR+  NL
Sbjct: 615 PAGTTIRVTKNL 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 92/132 (69%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------K 50
           ++  NM  YV++SN Y+AA+RWKD ARLR+ +R KG+KKTPACSW E+           K
Sbjct: 527 VDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDK 586

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHPY  +IN+AL  L E+ME+EGYV  T + LHDV++E K+ LLH HS R AI +G IST
Sbjct: 587 SHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIIST 646

Query: 111 PDGRTIRLINNL 122
             G TIR+I N+
Sbjct: 647 TAGTTIRVIKNI 658

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 92/133 (69%), Gaps = 11/133 (8%)

Query: 1   MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI----------- 49
           +++  NM  +VI+SN Y+AA+RW+D A+LRV +R  G+KKTPACSW E+           
Sbjct: 499 LVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGD 558

Query: 50  KSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIS 109
           KSHPY  +INEAL  L E+ME+EGYV  T E LHDV++E K++LL  HS R AI FG IS
Sbjct: 559 KSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIIS 618

Query: 110 TPDGRTIRLINNL 122
           T  G TIR+I N+
Sbjct: 619 TTSGTTIRVIKNI 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Cucumis sativus]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++ NN   Y++L+N Y+AARRWK+ A+ R S+R  G++KTPACSW E+K           
Sbjct: 531 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDE 590

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHP   +I EA++ L E ME+EGYVP T E  HDVE+EQKK L+  HS R AIVFG I+T
Sbjct: 591 SHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINT 650

Query: 111 PDGRTIRLINNL 122
           P G TIR+  NL
Sbjct: 651 PAGMTIRVTKNL 662

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330-like [Cucumis sativus]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++ NN   Y++L+N Y+AARRWK+ A+ R S+R  G++KTPACSW E+K           
Sbjct: 538 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDE 597

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHP   +I EA++ L E ME+EGYVP T E  HDVE+EQKK L+  HS R AIVFG I+T
Sbjct: 598 SHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINT 657

Query: 111 PDGRTIRLINNL 122
           P G TIR+  NL
Sbjct: 658 PAGMTIRVTKNL 669

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 88/132 (66%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           ++  N   Y++L+N Y+AARRWK+ A+ R S+R  G++KTPACSW E++           
Sbjct: 599 VDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDE 658

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHP   +I EA++ L E ME+EGYVP T E  HDVE+EQKK L+  HS R AIVFG I+T
Sbjct: 659 SHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINT 718

Query: 111 PDGRTIRLINNL 122
           P G TIR+  NL
Sbjct: 719 PAGTTIRVTKNL 730

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 84/132 (63%), Gaps = 11/132 (8%)

Query: 2   INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
           I+  NM  YV++ N YA+  RWK+ A+LR+ VR KG++K PACSW E+K           
Sbjct: 505 IDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDR 564

Query: 51  SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
           SHP   RINE LK + E+ME+EGYV  T   LHDV++E K+ LL  HS R A+ FG I+T
Sbjct: 565 SHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINT 624

Query: 111 PDGRTIRLINNL 122
             G TIR+  N+
Sbjct: 625 EPGTTIRVTKNI 636

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 11/128 (8%)

Query: 6   NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
           +M  +VILSN Y+A+ RW + A+LR S+R KGMKK PACSW E+K           SHP+
Sbjct: 473 SMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPW 532

Query: 55  RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
             RI +AL    E+M ++GYVP  ++ L D+E+EQK+ +L  HS + AIVFG ISTP G 
Sbjct: 533 YDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGT 592

Query: 115 TIRLINNL 122
           TIR++ NL
Sbjct: 593 TIRVMKNL 600

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2148101	850	AT5G16860 "AT5G16860" [Arabido	0.926	0.132	0.459	7.6e-23
TAIR|locus:2151501	697	AT5G46460 [Arabidopsis thalian	0.926	0.162	0.450	1e-21
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.959	0.149	0.429	1.3e-21
TAIR|locus:2115130	691	AT4G37170 "AT4G37170" [Arabido	0.991	0.175	0.416	2.7e-21
TAIR|locus:2077878	685	AT3G08820 "AT3G08820" [Arabido	0.926	0.164	0.419	4.8e-19
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	1.0	0.155	0.353	6.2e-19
TAIR|locus:2198546	760	AT1G20230 "AT1G20230" [Arabido	0.959	0.153	0.367	1.2e-18
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.991	0.163	0.393	2.5e-18
TAIR|locus:2032955	790	AT1G25360 "AT1G25360" [Arabido	0.926	0.143	0.408	2.7e-18
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.926	0.114	0.411	5e-18

TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 7.6e-23, P = 7.6e-23
 Identities = 57/124 (45%), Positives = 77/124 (62%)

Query:    10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE-IK----------SHPYRLRI 58
             Y +LSN YA A RWKD  R+R  +R+KG+KK P CSW E IK          +HP+   I
Sbjct:   684 YTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743

Query:    59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
              + L D  +R++  GYVP T  ALHDV+DE+K +LL  HS + A+ +G ++TP G  IR+
Sbjct:   744 YQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRI 803

Query:   119 INNL 122
               NL
Sbjct:   804 TKNL 807

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 55/122 (45%), Positives = 77/122 (63%)

Query:    10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI--KSH-------PYRLRINE 60
             YV+LSN YA+A RW + ++LRV ++  G+ K P  SW  I  K H       P+  RI E
Sbjct:   533 YVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCSRIYE 592

Query:    61 ALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLIN 120
              L+ L E++++ GY P  + ALHDVEDEQK+ +L YHS R AI FG I+T +G  + ++ 
Sbjct:   593 KLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMK 652

Query:   121 NL 122
             NL
Sbjct:   653 NL 654

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 55/128 (42%), Positives = 79/128 (61%)

Query:     6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HPY 54
             N  +YV+LSN YA++ RW D  +LRV +R+KG+KK P  SW EI++           HP 
Sbjct:   611 NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670

Query:    55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
             +  I   L++L  RM++ GYV  T   LHDVE+E+K+ ++ YHS R A+ +G +    GR
Sbjct:   671 KDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGR 730

Query:   115 TIRLINNL 122
              IR+I NL
Sbjct:   731 PIRVIKNL 738

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 55/132 (41%), Positives = 79/132 (59%)

Query:     2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
             I   N   YV ++N YAAA +W++  ++R  ++  G+ K P  SWTEIK           
Sbjct:   517 IEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADT 576

Query:    51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
             SHP   +I E L++L ++M++EGYVP T   LHDVEDEQK+  L YHS + A+ F  +ST
Sbjct:   577 SHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILST 636

Query:   111 PDGRTIRLINNL 122
              +G  I++  NL
Sbjct:   637 EEGTAIKVFKNL 648

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.8e-19, P = 4.8e-19
 Identities = 52/124 (41%), Positives = 70/124 (56%)

Query:    10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
             YV LSN Y+   RW + A +R  +  KGMKK P  SW E+           KSHP   +I
Sbjct:   519 YVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKI 578

Query:    59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
                L+DL   M   G+VPTT+    DVE+E+K+ +L YHS + A+  G IST  G+ IR+
Sbjct:   579 YAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRV 638

Query:   119 INNL 122
             + NL
Sbjct:   639 VKNL 642

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 6.2e-19, P = 6.2e-19
 Identities = 47/133 (35%), Positives = 79/133 (59%)

Query:     1 MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK---------- 50
             ++   N   Y  L+N Y+A  +W++ A++R S+++  +KK    SW E+K          
Sbjct:   611 LLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVED 670

Query:    51 -SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIS 109
              +HP +  I   +K +++ +++ GYVP T   LHD+E+E K+ +L +HS + AI FG IS
Sbjct:   671 GTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIS 730

Query:   110 TPDGRTIRLINNL 122
             TPD  T+R++ NL
Sbjct:   731 TPDKTTLRIMKNL 743

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 47/128 (36%), Positives = 75/128 (58%)

Query:     6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
             N   YV+LSN YAA   W +   +R  + + G+KK P CSW ++K           SHP 
Sbjct:   590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649

Query:    55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
               +I E + ++ + M + G+ P    ALHDVE+++++ +L  HS + A+VFG ++TPDG 
Sbjct:   650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709

Query:   115 TIRLINNL 122
              +++I NL
Sbjct:   710 PLQVIKNL 717

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 52/132 (39%), Positives = 73/132 (55%)

Query:     2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS---------- 51
             I   N   YV+LSN YA+A RW + A+ R  + +KGMKK P CS  EI S          
Sbjct:   567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626

Query:    52 -HPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
              HP    I   L+++   +E+ G+VP T E L ++E+E K+  L +HS + AI FG IST
Sbjct:   627 FHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 686

Query:   111 PDGRTIRLINNL 122
               G  + ++ NL
Sbjct:   687 KPGTKLTIVKNL 698

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 51/125 (40%), Positives = 75/125 (60%)

Query:    10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
             Y++LSN +AA  +W++ AR+R  +R++G+KK  ACSW E++           SHP    +
Sbjct:   623 YMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAV 682

Query:    59 NEALKDLFERMEQEGYVPTTKEALHDVE-DEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
                L+DL + M + GYVP T   LHDVE D  K+++L  HS + A+ FG +  P G TIR
Sbjct:   683 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 742

Query:   118 LINNL 122
             +  NL
Sbjct:   743 IFKNL 747

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 51/124 (41%), Positives = 73/124 (58%)

Query:    10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS--HPYRL--RINEA---- 61
             YV+LSN YAAA +W +    R  ++   +KK P  SW E+K+  H + +  R N      
Sbjct:   824 YVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELI 883

Query:    62 ---LKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
                +KD+   ++QEGYVP T   L DVE+E+K+  L+YHS + A+ FG +STP    IR+
Sbjct:   884 YRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRV 943

Query:   119 INNL 122
             I NL
Sbjct:   944 IKNL 947

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033662001 SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (747 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-19
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-18
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	2e-06

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 14/129 (10%)

Query: 4   LNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------H 52
           LNN   YV+L N Y ++ R  + A++  +++ KG+   PAC+W E+K            H
Sbjct: 528 LNN---YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584

Query: 53  PYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPD 112
           P    I + L +L + + + GYV    E L DV+++++K    YHS + AI FG I+T +
Sbjct: 585 PQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644

Query: 113 GRTIRLINN 121
              +++  +
Sbjct: 645 WTPLQITQS 653

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 77.6 bits (191), Expect = 7e-18
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 12/124 (9%)

Query: 10  YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
           Y++L N YA A +W + AR+R ++R  G+   P CSW E+K           SHP    I
Sbjct: 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753

Query: 59  NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
           N  L+  +E+M+  G   +   ++ ++E   K ++   HS R AI FG I+T  G  I +
Sbjct: 754 NTVLEGFYEKMKASGLAGSESSSMDEIE-VSKDDIFCGHSERLAIAFGLINTVPGMPIWV 812

Query: 119 INNL 122
             NL
Sbjct: 813 TKNL 816

Length = 857

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 19/78 (24%)

Query: 42  PACSWTEI-------KSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKK--- 91
           P C W+E         SHP       + ++LF+R++ EG VP TKE  HDV+ E+ +   
Sbjct: 1   PGCVWSEGKKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNG 54

Query: 92  ---NLLHYHSGRFAIVFG 106
               LL  H+ + A+ +G
Sbjct: 55  IKGKLLASHAEKQALAYG 72

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.6
PF13431	34	TPR_17: Tetratricopeptide repeat	96.94
PF13812	34	PPR_3: Pentatricopeptide repeat domain	96.54
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	96.53
PF13041	50	PPR_2: PPR repeat family	95.57
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	95.48
PF12854	34	PPR_1: PPR repeat	95.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	91.23
PF13371	73	TPR_9: Tetratricopeptide repeat	87.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	85.46
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.16
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.78

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5e-38  Score=262.81  Aligned_cols=121  Identities=36%  Similarity=0.678  Sum_probs=116.4

Q ss_pred             CCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCCCCCceeEEEec-----------ccchhhhhHHHHHHHHHHH
Q 033305            1 MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRINEALKDLFERM   69 (122)
Q Consensus         1 el~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~k~~g~S~iev~-----------~h~~~~~i~~~l~~l~~~~   69 (122)
                      +++|++++.|++|+|+|+..|+|+++.++|+.|+++|++|.|||||||++           +||+.++||.+|++|..+|
T Consensus       685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~  764 (857)
T PLN03077        685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM  764 (857)
T ss_pred             hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999987           8999999999999999999


Q ss_pred             HhcCcccCCCccccccchHhhhhhhhhhHHHHHHHHHhhcCCCCCeEEEecCC
Q 033305           70 EQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL  122 (122)
Q Consensus        70 ~~~gy~~~~~~~~~~~~ee~~~~~~~~Hseklaia~gl~~~~~~~~irv~kn~  122 (122)
                      ++.||+|++..++ +.+|++|+..+++||||||||||||++++|+||||+|||
T Consensus       765 ~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knl  816 (857)
T PLN03077        765 KASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNL  816 (857)
T ss_pred             HhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCC
Confidence            9999999998877 557888999999999999999999999999999999997

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=242.67  Aligned_cols=122  Identities=30%  Similarity=0.592  Sum_probs=118.7

Q ss_pred             CCCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCCCCCceeEEEec-----------ccchhhhhHHHHHHHHHHH
Q 033305            1 MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRINEALKDLFERM   69 (122)
Q Consensus         1 el~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~k~~g~S~iev~-----------~h~~~~~i~~~l~~l~~~~   69 (122)
                      +++|.+.+.|++|+|+|+..|+|++|.++++.|+++|++|.||||||+++           +||+.++||..|++|..+|
T Consensus       522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~  601 (697)
T PLN03081        522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI  601 (697)
T ss_pred             CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999986           7999999999999999999


Q ss_pred             HhcCcccCCCccccccchHhhhhhhhhhHHHHHHHHHhhcCCCCCeEEEecCC
Q 033305           70 EQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLINNL  122 (122)
Q Consensus        70 ~~~gy~~~~~~~~~~~~ee~~~~~~~~Hseklaia~gl~~~~~~~~irv~kn~  122 (122)
                      ++.||+|++..+++++++++++..+++||||||||||||++++|.||||+|||
T Consensus       602 ~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knl  654 (697)
T PLN03081        602 SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSH  654 (697)
T ss_pred             HHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999997

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.60  E-value=7.6e-16  Score=102.00  Aligned_cols=66  Identities=53%  Similarity=0.992  Sum_probs=55.3

Q ss_pred             ceeEEEec-------ccchhhhhHHHHHHHHHHHHhcCcccCCCccccccchHhh--------hhhhhhhHHHHHHHHHh
Q 033305           43 ACSWTEIK-------SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQK--------KNLLHYHSGRFAIVFGA  107 (122)
Q Consensus        43 g~S~iev~-------~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ee~~--------~~~~~~Hseklaia~gl  107 (122)
                      ||||+++.       +||+.        .+..++...||.|+...+.++++++++        +..+++||||||+||||
T Consensus         2 ~~~w~~~h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgl   73 (116)
T PF14432_consen    2 GCSWIEVHSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGL   73 (116)
T ss_pred             CCCccceEEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcc
Confidence            89999965       89987        555677778999988888887777654        67899999999999999


Q ss_pred             hcCCCCCeEEEecCC
Q 033305          108 ISTPDGRTIRLINNL  122 (122)
Q Consensus       108 ~~~~~~~~irv~kn~  122 (122)
                      +++      ||+||+
T Consensus        74 i~~------~vvkn~   82 (116)
T PF14432_consen   74 INT------RVVKNL   82 (116)
T ss_pred             cce------eEEecC
Confidence            998      888885

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.94  E-value=0.00053  Score=35.44  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             CCCCCCchhHHHHHHHHHHcCCChhHH
Q 033305            1 MINLNNMRVYVILSNAYAAARRWKDTA   27 (122)
Q Consensus         1 el~p~~~~~yvlLsniYa~~G~w~~~~   27 (122)
                      +++|+++.+|.-|+++|...|++++|.
T Consensus         7 e~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    7 ELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            579999999999999999999999875

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=96.54  E-value=0.0047  Score=30.88  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305            9 VYVILSNAYAAARRWKDTARLRVSVRNKGMK   39 (122)
Q Consensus         9 ~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~   39 (122)
                      .|..+.+.|+..|+++.+.++...|++.|++
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~   33 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK   33 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            5889999999999999999999999999874

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=96.53  E-value=0.0029  Score=30.97  Aligned_cols=30  Identities=17%  Similarity=0.416  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHHHHhccCC
Q 033305            9 VYVILSNAYAAARRWKDTARLRVSVRNKGM   38 (122)
Q Consensus         9 ~yvlLsniYa~~G~w~~~~~~r~~m~~~~l   38 (122)
                      .|..|-+.|+..|++++|.++...|++.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            478899999999999999999999998874

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13041 PPR_2: PPR repeat family

Probab=95.57  E-value=0.023  Score=31.31  Aligned_cols=33  Identities=21%  Similarity=0.498  Sum_probs=30.1

Q ss_pred             chhHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305            7 MRVYVILSNAYAAARRWKDTARLRVSVRNKGMK   39 (122)
Q Consensus         7 ~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~   39 (122)
                      .-.|-.|-+.|+..|++++|.++.+.|+++|+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~   35 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK   35 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence            456888999999999999999999999999986

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=95.48  E-value=0.026  Score=27.83  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305            9 VYVILSNAYAAARRWKDTARLRVSVRNKGMK   39 (122)
Q Consensus         9 ~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~   39 (122)
                      .|..+-+.|+..|++++|.++...|+..|+.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~   32 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIE   32 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            4777888999999999999999999998875

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF12854 PPR_1: PPR repeat

Probab=95.09  E-value=0.033  Score=28.49  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             CchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 033305            6 NMRVYVILSNAYAAARRWKDTARLRVSVR   34 (122)
Q Consensus         6 ~~~~yvlLsniYa~~G~w~~~~~~r~~m~   34 (122)
                      |...|-.|.+.|+..|+.++|.++...|+
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            35669999999999999999999988874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=91.23  E-value=0.66  Score=26.41  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=26.5

Q ss_pred             CCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305            2 INLNNMRVYVILSNAYAAARRWKDTARLRVS   32 (122)
Q Consensus         2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~   32 (122)
                      .+|+++..++.|+.+|...|++++|..+-..
T Consensus        20 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~   50 (68)
T PF14559_consen   20 RNPDNPEARLLLAQCYLKQGQYDEAEELLER   50 (68)
T ss_dssp             HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3799999999999999999999999987553

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=87.07  E-value=0.56  Score=27.14  Aligned_cols=31  Identities=3%  Similarity=0.091  Sum_probs=27.4

Q ss_pred             CCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305            1 MINLNNMRVYVILSNAYAAARRWKDTARLRV   31 (122)
Q Consensus         1 el~p~~~~~yvlLsniYa~~G~w~~~~~~r~   31 (122)
                      +++|+++..|...+.+|...|++.+|...-.
T Consensus        23 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~   53 (73)
T PF13371_consen   23 ELDPDDPELWLQRARCLFQLGRYEEALEDLE   53 (73)
T ss_pred             HhCcccchhhHHHHHHHHHhccHHHHHHHHH
Confidence            3689999999999999999999999987644

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=85.46  E-value=1.2  Score=25.25  Aligned_cols=31  Identities=10%  Similarity=0.164  Sum_probs=26.0

Q ss_pred             CCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305            2 INLNNMRVYVILSNAYAAARRWKDTARLRVS   32 (122)
Q Consensus         2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~   32 (122)
                      .+|+++..+..++.+|...|++++|...-..
T Consensus        26 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen   26 QDPDNPEAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5789999999999999999999999876443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.16  E-value=1  Score=22.88  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHcCCChhHHHHHH
Q 033305            9 VYVILSNAYAAARRWKDTARLRV   31 (122)
Q Consensus         9 ~yvlLsniYa~~G~w~~~~~~r~   31 (122)
                      +|..|.++|...|+|++|...-+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~   23 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYE   23 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHH
Confidence            47789999999999999998643

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.78  E-value=2.2  Score=20.10  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHHcCCChhHHHHH
Q 033305            8 RVYVILSNAYAAARRWKDTARLR   30 (122)
Q Consensus         8 ~~yvlLsniYa~~G~w~~~~~~r   30 (122)
                      .....|+..|...|++++|.++-
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Confidence            45778999999999999998753

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	91.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.38
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	86.34
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	85.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	82.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	80.96
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	80.18

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=91.18  E-value=0.052  Score=46.86  Aligned_cols=87  Identities=14%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CchhHHHHHHHHHHcCCChhHHHHHHHHhccCCCCCCceeEEE-ecccchhhhhHHHHHHHHHHHHhcCcccCCCccccc
Q 033305            6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE-IKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHD   84 (122)
Q Consensus         6 ~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~k~~g~S~ie-v~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~   84 (122)
                      |...|..|.+.|+..|++++|.++...|++.|+.-. -.+|-. ++..-......+...++..+|...|+.||...-..-
T Consensus       164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~l  242 (1134)
T 3spa_A          164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL  242 (1134)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSC
T ss_pred             CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccc
Confidence            456799999999999999999999999999998521 111110 000000111122334678899999999985432223


Q ss_pred             cchHhhhhh
Q 033305           85 VEDEQKKNL   93 (122)
Q Consensus        85 ~~ee~~~~~   93 (122)
                      +..++++.+
T Consensus       243 l~~~eR~~v  251 (1134)
T 3spa_A          243 LSEEDRATV  251 (1134)
T ss_dssp             CCHHHHHHH
T ss_pred             cChhhHHHH
Confidence            444444433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.38  E-value=0.33  Score=29.28  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhcc
Q 033305            2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNK   36 (122)
Q Consensus         2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~   36 (122)
                      ++|.++.+..+|.++|...|++++|......+-+.
T Consensus        38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A           38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            58999999999999999999999999988777543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=86.34  E-value=0.39  Score=37.64  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=26.8

Q ss_pred             CchhHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305            6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMK   39 (122)
Q Consensus         6 ~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~   39 (122)
                      |...|..|.+.|+..|++++|.++...|+..|+.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~  137 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ  137 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence            3556778888888888888888888888887774

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=85.48  E-value=0.51  Score=27.94  Aligned_cols=26  Identities=4%  Similarity=-0.127  Sum_probs=13.7

Q ss_pred             CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305            3 NLNNMRVYVILSNAYAAARRWKDTAR   28 (122)
Q Consensus         3 ~p~~~~~yvlLsniYa~~G~w~~~~~   28 (122)
                      +|.++..+..++.+|...|++++|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~   28 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALA   28 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            45555555555555555555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=82.70  E-value=1.1  Score=26.31  Aligned_cols=30  Identities=17%  Similarity=0.200  Sum_probs=26.6

Q ss_pred             CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305            2 INLNNMRVYVILSNAYAAARRWKDTARLRV   31 (122)
Q Consensus         2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~   31 (122)
                      ++|.++.+|..++.+|...|++++|...-+
T Consensus        36 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   65 (100)
T 3ma5_A           36 TDPDYVGTYYHLGKLYERLDRTDDAIDTYA   65 (100)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            579999999999999999999999987543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=80.96  E-value=2.1  Score=27.13  Aligned_cols=30  Identities=7%  Similarity=0.019  Sum_probs=24.3

Q ss_pred             CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305            2 INLNNMRVYVILSNAYAAARRWKDTARLRV   31 (122)
Q Consensus         2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~   31 (122)
                      ++|.++.+|..++.+|...|++++|...-+
T Consensus        60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~   89 (150)
T 4ga2_A           60 VQERDPKAHRFLGLLYELEENTDKAVECYR   89 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            578888888888888888888888887543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=80.18  E-value=3.3  Score=26.06  Aligned_cols=27  Identities=15%  Similarity=0.074  Sum_probs=16.5

Q ss_pred             CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305            3 NLNNMRVYVILSNAYAAARRWKDTARL   29 (122)
Q Consensus         3 ~p~~~~~yvlLsniYa~~G~w~~~~~~   29 (122)
                      +|.++.+|..++.+|...|++++|...
T Consensus        93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           93 EETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence            566666666666666666666665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	80.32

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.32  E-value=1.1  Score=27.28  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCCCCCceeEEEecccchhhhhHHHHHHHHHHHH
Q 033305            2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERME   70 (122)
Q Consensus         2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~k~~g~S~iev~~h~~~~~i~~~l~~l~~~~~   70 (122)
                      ++|.+.-+|..++.+|...|++++|...-...-    .           ..|...++...+..+..++.
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al----~-----------l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA----S-----------LNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----H-----------HSTTCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH----H-----------hCCCCHHHHHHHHHHHHHHH
Confidence            578888888888899999999888887543221    1           13555555555665555554