Citrus Sinensis ID: 033320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSDKNI
Secondary Structure (PSIPRED)
cccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccEccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlvdefperpgqpecsyflrtgdckyksnckyhhpknripksppctlsdkglplrpgqnvcsyysrygickfgpackydhpihpdasaeygldpppsfgdsttrqetgmagtgngngsdkni
Flexible Loop (DISEMBL)
mlvdefperpgqpecSYFLRTGDCKYKSNCKyhhpknripksppcTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRqetgmagtgngngsdkni
Low Complexity Region (SEG)
MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSDKNI
Disordered region (IsUnstruct)
**************CSYFLRTGDCKYKSNCKYHH*****************LPLRPGQNVCSYYSRYGICKFGPACKYDHPI****************************************
Disordered Region (DISOPRED)
****EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI***********GLPLRPGQNVCSYYSRYGICKFGPACKYDH******************************************
Disordered Region (DISEMBL)
**********GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSDKNI
Disordered Region (DISPRO)
*****F**RPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSDKNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q9STM4	448	Zinc finger CCCH domain-c	yes	no	0.672	0.183	0.719	6e-36
Q5RJC5	435	Zinc finger CCCH domain-c	no	no	0.877	0.245	0.546	3e-33
Q2R4J4	444	Zinc finger CCCH domain-c	yes	no	0.786	0.216	0.57	3e-29
Q3ECU8	82	Zinc finger CCCH domain-c	no	no	0.655	0.975	0.687	2e-28
Q8L7N8	375	Zinc finger CCCH domain-c	no	no	0.852	0.277	0.523	3e-28
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.622	0.167	0.636	3e-27
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.614	0.188	0.615	7e-27
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.606	0.177	0.610	5e-26
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.639	0.177	0.607	1e-25
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.622	0.162	0.569	2e-24

>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 76/89 (85%)

Query: 1   MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
           M  +EFPERP QPECSY+++TGDCK+K NCKYHHPKNR+PK PP  L+DKGLPLRP QN+
Sbjct: 338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNI 397

Query: 61  CSYYSRYGICKFGPACKYDHPIHPDASAE 89
           C+YYSRYGICKFGPAC++DH + P  S E
Sbjct: 398 CTYYSRYGICKFGPACRFDHSVQPPYSTE 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 83/119 (69%), Gaps = 12/119 (10%)

Query: 1   MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
           M V+EFPERP QPEC+Y+L+TGDCK+K  CKYHHPKNR+PK    + +DKGLPLRP Q++
Sbjct: 326 MSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSM 385

Query: 61  CSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSD 119
           C++YSRYGICKFGPAC++DH I            PP+F  S+++         NGN  D
Sbjct: 386 CTHYSRYGICKFGPACRFDHSI------------PPTFSPSSSQTVEARQVGANGNEDD 432

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 75/100 (75%), Gaps = 4/100 (4%)

Query: 6   FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
           FPERP QPEC ++++TGDCK+ + CK+HHPK RI  +P C LS  GLPLRPG+ +C++YS
Sbjct: 306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYS 365

Query: 66  RYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQ 105
           RYGICKFGP CK+DHP+    +  YGL   P+ GD + R+
Sbjct: 366 RYGICKFGPNCKFDHPM---GTVMYGLATSPT-GDVSARR 401

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis thaliana GN=At1g48195 PE=4 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 66/80 (82%)

Query: 1  MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
          M  ++FPERPG+PECSY+LRTG+C  K NCKYHHPKN  P  P CTL+DKGLPLRPGQ +
Sbjct: 1  MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAI 60

Query: 61 CSYYSRYGICKFGPACKYDH 80
          C +YSR+GIC+ GP CK+DH
Sbjct: 61 CPHYSRFGICRSGPTCKFDH 80

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 3/107 (2%)

Query: 4   DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
           + FPERPGQPEC ++++TGDCK+ + CK+HHP++R    P C LS  GLPLRPG+ +C +
Sbjct: 238 NVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVF 297

Query: 64  YSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMA 110
           YSRYGICKFGP+CK+DHP+           P PS   S+  QET + 
Sbjct: 298 YSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAIT 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 64/77 (83%)

Query: 6   FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
           FPERP QPEC ++++TGDCK+ + CK+HHPK R+  +P C L+  GLPLRPG+ VC++YS
Sbjct: 315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYS 374

Query: 66  RYGICKFGPACKYDHPI 82
           RYGICKFGP CK+DHP+
Sbjct: 375 RYGICKFGPNCKFDHPM 391

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 64/78 (82%)

Query: 6   FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
           FPERPGQPEC ++++TGDCK+ + CK+HHP++R    P C LS  GLPLRPG+ +C +Y+
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330

Query: 66  RYGICKFGPACKYDHPIH 83
           RYGICKFGP+CK+DHP+ 
Sbjct: 331 RYGICKFGPSCKFDHPMR 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 63/77 (81%)

Query: 6   FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
           FPERP QPEC ++++TGDCK+ + C++HHP+ R   +P C LS  GLPLRPG+ +C +YS
Sbjct: 275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYS 334

Query: 66  RYGICKFGPACKYDHPI 82
           RYGICKFGP+CK+DHP+
Sbjct: 335 RYGICKFGPSCKFDHPM 351

Pisum sativum (taxid: 3888)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 61/79 (77%)

Query: 4   DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
           + FPERP QPEC Y+++TGDCK+ + CK+HHP+ R   +P C LS  GLPLRPG+ +C +
Sbjct: 327 NVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKF 386

Query: 64  YSRYGICKFGPACKYDHPI 82
           YSRYGICKFG  CK+DHP 
Sbjct: 387 YSRYGICKFGANCKFDHPT 405

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 4   DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
             FPERPG+PEC Y+L+TGDCK+ ++CK+HHP++R+P    C LS  GLPLRPG   C++
Sbjct: 284 QAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTF 343

Query: 64  YSRYGICKFGPACKYDHPI 82
           Y + G CKFG  CK+DHP+
Sbjct: 344 YVQNGFCKFGSTCKFDHPM 362

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
255540399	495	nucleic acid binding protein, putative [	0.942	0.232	0.715	4e-43
224119564	477	predicted protein [Populus trichocarpa]	0.885	0.226	0.652	2e-41
359491687	481	PREDICTED: zinc finger CCCH domain-conta	0.934	0.237	0.683	3e-41
225456787	484	PREDICTED: zinc finger CCCH domain-conta	0.934	0.235	0.683	3e-41
307136126	475	nucleic acid binding protein [Cucumis me	0.950	0.244	0.663	9e-40
224133812	341	predicted protein [Populus trichocarpa]	0.934	0.334	0.695	9e-40
449469596	473	PREDICTED: zinc finger CCCH domain-conta	0.950	0.245	0.663	1e-39
449487726	473	PREDICTED: zinc finger CCCH domain-conta	0.950	0.245	0.663	1e-39
358348997	511	Zinc finger CCCH domain-containing prote	0.885	0.211	0.663	1e-37
356513852	490	PREDICTED: zinc finger CCCH domain-conta	0.926	0.230	0.649	2e-37

>gi|255540399|ref|XP_002511264.1| nucleic acid binding protein, putative [Ricinus communis] gi|223550379|gb|EEF51866.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 94/116 (81%), Gaps = 1/116 (0%)

Query: 1   MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
           + V+EFPERPGQPECSYF++TGDCK+KSNCKYHHPKN I KSPPC LSDKGLPLRPGQN+
Sbjct: 371 IQVEEFPERPGQPECSYFMKTGDCKFKSNCKYHHPKNHISKSPPCVLSDKGLPLRPGQNI 430

Query: 61  CSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPS-FGDSTTRQETGMAGTGNG 115
           CSYYSRYGICKFGPACK+DHPI P +S     D     F DS T++E  MA +GN 
Sbjct: 431 CSYYSRYGICKFGPACKFDHPIQPVSSTTGSADDVRMPFSDSGTKEEAKMALSGNA 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119564|ref|XP_002318105.1| predicted protein [Populus trichocarpa] gi|222858778|gb|EEE96325.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 97/118 (82%)

Query: 1   MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
           ++VDEFPERPGQP+CS++++ GDCK+KSNCKYHHPKNRI KSPP TLSDKGLPLRP QN+
Sbjct: 357 IVVDEFPERPGQPQCSFYMKFGDCKFKSNCKYHHPKNRISKSPPLTLSDKGLPLRPDQNI 416

Query: 61  CSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGS 118
           CS+YSRYGICKFGP+CK+DH I P +S     D   +FG+S T++   MA +GNG+ +
Sbjct: 417 CSHYSRYGICKFGPSCKFDHSIQPASSIGSSDDQNTAFGNSVTQEAARMAESGNGSDT 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491687|ref|XP_003634306.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 2 [Vitis vinifera]

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 97/120 (80%), Gaps = 6/120 (5%)

Query: 2   LVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVC 61
           L+++FPERPGQPECSYFL+TGDCK+++ CKYHHPKNRIPKSPPCTLSDKGLPLRP QN+C
Sbjct: 355 LIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCTLSDKGLPLRPDQNIC 414

Query: 62  SYYSRYGICKFGPACKYDHPIH-----PDASAEYGLDPPPSFGDSTTRQETGMAGTGNGN 116
           ++Y+RYGICKFGPACK+DHP++        SAE G D PP FG S T       G+GNGN
Sbjct: 415 THYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQPPPFGGSVTADGV-RPGSGNGN 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456787|ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1 [Vitis vinifera] gi|297733636|emb|CBI14883.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 97/120 (80%), Gaps = 6/120 (5%)

Query: 2   LVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVC 61
           L+++FPERPGQPECSYFL+TGDCK+++ CKYHHPKNRIPKSPPCTLSDKGLPLRP QN+C
Sbjct: 358 LIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCTLSDKGLPLRPDQNIC 417

Query: 62  SYYSRYGICKFGPACKYDHPIH-----PDASAEYGLDPPPSFGDSTTRQETGMAGTGNGN 116
           ++Y+RYGICKFGPACK+DHP++        SAE G D PP FG S T       G+GNGN
Sbjct: 418 THYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQPPPFGGSVTADGV-RPGSGNGN 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136126|gb|ADN33972.1| nucleic acid binding protein [Cucumis melo subsp. melo]

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 92/116 (79%)

Query: 3   VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCS 62
           VDE+PERPGQPECSYFL+TGDCK+KS CKYHHPKNR PK P CTL+DKGLPLRP QNVC+
Sbjct: 354 VDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCT 413

Query: 63  YYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGS 118
           YYSRYGICKFGP+CK+DHP  P +S    L+  P +G+ +  +   MAG  +GN +
Sbjct: 414 YYSRYGICKFGPSCKFDHPFLPTSSTVGELEQQPHYGNFSAAEGAEMAGGASGNSA 469

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133812|ref|XP_002321667.1| predicted protein [Populus trichocarpa] gi|222868663|gb|EEF05794.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 80/115 (69%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 2   LVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVC 61
           +VDEFPERPGQ  CSYF++ GDCK+KSNCKYHHPKNRIPKSP  TLSDKGLPLRP Q +C
Sbjct: 220 VVDEFPERPGQQLCSYFMKFGDCKFKSNCKYHHPKNRIPKSPSLTLSDKGLPLRPDQIIC 279

Query: 62  SYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGN 116
           SYYSRYGICKFGPACK+DH I P +S   G D   +FG+S T+++  MA +GNG+
Sbjct: 280 SYYSRYGICKFGPACKFDHSIQPPSSGS-GDDQHTAFGNSVTQEKARMAESGNGS 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469596|ref|XP_004152505.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cucumis sativus]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 92/116 (79%)

Query: 3   VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCS 62
           VDE+PERPGQPECSYFL+TGDCK+KS CKYHHPKNR PK P CTL+DKGLPLRP QNVC+
Sbjct: 352 VDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCT 411

Query: 63  YYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGS 118
           YY RYGICKFGP+CK+DHP  P +S    L+  P +G+ +T +   MAG  +GN +
Sbjct: 412 YYRRYGICKFGPSCKFDHPFLPSSSTVGELEQQPHYGNFSTAEGAEMAGGASGNSA 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487726|ref|XP_004157770.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cucumis sativus]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 92/116 (79%)

Query: 3   VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCS 62
           VDE+PERPGQPECSYFL+TGDCK+KS CKYHHPKNR PK P CTL+DKGLPLRP QNVC+
Sbjct: 352 VDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCT 411

Query: 63  YYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGS 118
           YY RYGICKFGP+CK+DHP  P +S    L+  P +G+ +T +   MAG  +GN +
Sbjct: 412 YYRRYGICKFGPSCKFDHPFLPSSSTVGELEQQPHYGNFSTAEGAEMAGGASGNSA 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348997|ref|XP_003638527.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355504462|gb|AES85665.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 89/113 (78%)

Query: 3   VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCS 62
           V+EFPERPG+PECS+FL+TGDCK+KS+CK+HHPKNRI K PPC LSDKGLPLRPGQNVC+
Sbjct: 397 VEEFPERPGEPECSFFLKTGDCKFKSHCKFHHPKNRITKLPPCNLSDKGLPLRPGQNVCT 456

Query: 63  YYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNG 115
           +YSRYGICKFGPACKYDHPI+       G     S  +S + +E G AG  + 
Sbjct: 457 HYSRYGICKFGPACKYDHPINLPPPTMPGRYQQSSHTNSASIEEAGSAGASDA 509

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513852|ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like [Glycine max]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 92/117 (78%), Gaps = 4/117 (3%)

Query: 1   MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
           M VDEFPERPG+PECS+FL+TGDCK+KSNCK+HHPKNR+ + PPC LSDKGLPLRP Q+V
Sbjct: 368 MPVDEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQSV 427

Query: 61  CSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNG 117
           CS+YSRYGICKFGPACK+DHPI+       GL+   S+ +S +    G+AG G   G
Sbjct: 428 CSHYSRYGICKFGPACKFDHPINLQPVMIPGLE-QQSYSNSAS---AGVAGIGGSTG 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.778	0.212	0.673	1.5e-37
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.655	0.975	0.687	1.6e-31
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.827	0.269	0.538	6.2e-30
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.950	0.292	0.479	1.5e-28
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.631	0.164	0.584	6.3e-26
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.680	0.179	0.566	9.8e-26
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.713	0.187	0.526	1.1e-23
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.827	0.25	0.481	1.8e-22
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.622	0.145	0.457	2.6e-18
TAIR|locus:2013763	321	AT1G29570 [Arabidopsis thalian	0.311	0.118	0.410	1e-07

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 66/98 (67%), Positives = 80/98 (81%)

Query:     1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
             M  +EFPERP QPECSY+++TGDCK+K NCKYHHPKNR+PK PP  L+DKGLPLRP QN+
Sbjct:   338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNI 397

Query:    61 CSYYSRYGICKFGPACKYDHPIHPDASAEYG---LDPP 95
             C+YYSRYGICKFGPAC++DH + P  S E     ++PP
Sbjct:   398 CTYYSRYGICKFGPACRFDHSVQPPYSTESSQAIVEPP 435

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 55/80 (68%), Positives = 66/80 (82%)

Query:     1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
             M  ++FPERPG+PECSY+LRTG+C  K NCKYHHPKN  P  P CTL+DKGLPLRPGQ +
Sbjct:     1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAI 60

Query:    61 CSYYSRYGICKFGPACKYDH 80
             C +YSR+GIC+ GP CK+DH
Sbjct:    61 CPHYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 56/104 (53%), Positives = 73/104 (70%)

Query:     6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
             FPERPGQPEC ++++TGDCK+ + CK+HHP++R    P C LS  GLPLRPG+ +C +YS
Sbjct:   240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299

Query:    66 RYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGM 109
             RYGICKFGP+CK+DHP+           P PS   S+  QET +
Sbjct:   300 RYGICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAI 340

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/123 (47%), Positives = 81/123 (65%)

Query:     6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
             FPERPGQPEC ++++TGDCK+ + CK+HHP++R    P C LS  GLPLRPG+ +C +Y+
Sbjct:   271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330

Query:    66 RYGICKFGPACKYDHPI----HPDASAEYGLDPPPSFGDST--TRQETGMAGTGNGNGSD 119
             RYGICKFGP+CK+DHP+    + + ++E       S G S   +  ET  A T   +G D
Sbjct:   331 RYGICKFGPSCKFDHPMRVFTYDNTASETDEVVETSTGKSRRLSVSETRQAAT-TSSGKD 389

Query:   120 KNI 122
               I
Sbjct:   390 TTI 392

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 6.3e-26, P = 6.3e-26
 Identities = 45/77 (58%), Positives = 60/77 (77%)

Query:     6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
             FPERPG+PEC Y+L+TGDCK+ ++CK+HHP++R+P    C LS  GLPLRPG   C++Y 
Sbjct:   286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345

Query:    66 RYGICKFGPACKYDHPI 82
             + G CKFG  CK+DHP+
Sbjct:   346 QNGFCKFGSTCKFDHPM 362

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 9.8e-26, P = 9.8e-26
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query:     5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
             EFP+RP QPEC YF+RTGDCK+ S+C+YHHP + +P      LS  GLPLRPG   C+++
Sbjct:   303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHF 362

Query:    65 SRYGICKFGPACKYDHPIHPDAS 87
             +++GICKFGPACK+DH +    S
Sbjct:   363 AQHGICKFGPACKFDHSMSSSLS 385

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/93 (52%), Positives = 65/93 (69%)

Query:     6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPC-TLSDKGLPLRPGQNVCSYY 64
             FP+RP QPEC YF+RTGDCK+ ++C++HHP      SP   TLS  GLPLRPG   C+++
Sbjct:   297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAA--SPEASTLSHIGLPLRPGAVPCTHF 354

Query:    65 SRYGICKFGPACKYDHPIHPDASAEYGLDPPPS 97
             +++GICKFGPACK+DH +    S+     P PS
Sbjct:   355 AQHGICKFGPACKFDHSL---GSSSLSYSPSPS 384

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 52/108 (48%), Positives = 66/108 (61%)

Query:     4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
             +E PER GQP+C YFL+TG CKY   CKYHHPK+R   + P   +  GLP+R G+  C Y
Sbjct:    85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDR-NGAQPVMFNVIGLPMRLGEKPCPY 143

Query:    64 YSRYGICKFGPACKYDHPIHPDA--SAEYGLDPPPSFGDSTTRQETGM 109
             Y R G C+FG ACK+ HP  PD   S  YG+    SF  +  R  +G+
Sbjct:   144 YLRTGTCRFGVACKFHHP-QPDNGHSTAYGMS---SFPAADLRYASGL 187

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 38/83 (45%), Positives = 52/83 (62%)

Query:     6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI-------PKSPPCTLSDKGLPLRPGQ 58
             +P+RPGQ EC Y+++TG+CK+   CK+HHP +R+       P+ P   LS  G P R G 
Sbjct:   417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476

Query:    59 NVCSYYSRYGICKFGPACKYDHP 81
               C YY + G CK+G  CK+DHP
Sbjct:   477 LNCPYYMKTGTCKYGATCKFDHP 499

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2013763 AT1G29570 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query:     6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPP 44
             +P RPG+ +C ++L+ G C+Y+S+C+++HP  R P+  P
Sbjct:    52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR-PQELP 89

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STM4	C3H43_ARATH	No assigned EC number	0.7191	0.6721	0.1830	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015900001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (478 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	5e-05

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 10 PGQPECSYFLRTGDCKYKSNCKYHHPK 36
               C +F RTG CKY   CK+ H +
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 37.2 bits (87), Expect = 5e-05
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 56 PGQNVCSYYSRYGICKFGPACKYDHP 81
              +C ++SR G CK+G  CK+ H 
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.52
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.83
KOG1763	343	consensus Uncharacterized conserved protein, conta	98.73
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.66
KOG2333	614	consensus Uncharacterized conserved protein [Gener	98.65
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.62
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.57
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.53
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.43
smart00356	27	ZnF_C3H1 zinc finger.	98.36
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.23
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	98.23
smart00356	27	ZnF_C3H1 zinc finger.	98.14
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	97.97
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.87
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	97.83
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.77
KOG2185	486	consensus Predicted RNA-processing protein, contai	97.54
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.41
KOG2185	486	consensus Predicted RNA-processing protein, contai	97.36
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.35
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.34
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.31
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	97.18
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	97.05
COG5152	259	Uncharacterized conserved protein, contains RING a	97.0
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	96.3
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.56
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.49
COG5152	259	Uncharacterized conserved protein, contains RING a	95.33
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.96
KOG1763	343	consensus Uncharacterized conserved protein, conta	93.94
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	93.58
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.01
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	92.76
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	91.76
KOG4791	667	consensus Uncharacterized conserved protein [Funct	90.57
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	84.67
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	82.07
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	80.61
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	80.53

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.52  E-value=1.2e-14  Score=117.05  Aligned_cols=82  Identities=27%  Similarity=0.681  Sum_probs=67.1

Q ss_pred             CCCCCCCCccccccccccccCCC-CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCC
Q 033320            4 DEFPERPGQPECSYFLRTGDCKY-KSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus         4 ~~~~~rp~~~~Cr~f~k~G~C~~-G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      +..+++.++++|++|.+.|.|+| |++|+|+|...+.....  .+...+.+...++++|.+|+++|.|+||.+|+|.|..
T Consensus       124 ~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  124 ERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             ccCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence            56688999999999999999999 99999999987643110  1123445667789999999999999999999999999


Q ss_pred             CCCCC
Q 033320           83 HPDAS   87 (122)
Q Consensus        83 ~~~~~   87 (122)
                      .+...
T Consensus       202 ~~~~~  206 (332)
T KOG1677|consen  202 PEDRA  206 (332)
T ss_pred             ccccc
Confidence            87643

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.83  E-value=5.4e-10  Score=60.46  Aligned_cols=27  Identities=30%  Similarity=0.897  Sum_probs=21.5

Q ss_pred             CCccccccccccccCCCCCCCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPK   36 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~   36 (122)
                      +++++|++|++.|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            467899999988999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=98.73  E-value=2.3e-09  Score=86.87  Aligned_cols=78  Identities=27%  Similarity=0.583  Sum_probs=56.4

Q ss_pred             CCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC-------------------CCCCCCCCCcccccccC-
Q 033320            7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSD-------------------KGLPLRPGQNVCSYYSR-   66 (122)
Q Consensus         7 ~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~-------------------~g~p~~~~~~~C~~f~~-   66 (122)
                      .+.|+..+|-||. .|.|..|+.|+|+|+.....+.+--.++.                   .+-|......+|+||+. 
T Consensus        87 gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeA  165 (343)
T KOG1763|consen   87 GVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEA  165 (343)
T ss_pred             CCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHH
Confidence            4679999999997 79999999999999986544332222221                   11233334569999984 


Q ss_pred             -----cC---cCCCCC-CCccCCCCCCC
Q 033320           67 -----YG---ICKFGP-ACKYDHPIHPD   85 (122)
Q Consensus        67 -----~G---~C~~G~-~Crf~H~~~~~   85 (122)
                           +|   .||+|- .|.|+|..++.
T Consensus       166 vE~~kYGWfW~CPnGg~~C~YrHaLP~G  193 (343)
T KOG1763|consen  166 VENGKYGWFWECPNGGDKCIYRHALPEG  193 (343)
T ss_pred             HhcCCccceeECCCCCCeeeeeecCCcc
Confidence                 45   399985 89999998876

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.66  E-value=1.1e-08  Score=83.92  Aligned_cols=88  Identities=25%  Similarity=0.506  Sum_probs=62.6

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC-CCC------------CCCCCCcccccccCcCcCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSD-KGL------------PLRPGQNVCSYYSRYGICKFGPA   75 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~-~g~------------p~~~~~~~C~~f~~~G~C~~G~~   75 (122)
                      ..+..+|+||++ |.|..|+.|.|+|.. .+.+.+.|.++. .|.            ........|.+|.. |+|+.|..
T Consensus        74 ~~~~~vcK~~l~-glC~kgD~C~Flhe~-~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~-g~c~~g~~  150 (325)
T KOG1040|consen   74 SRGKVVCKHWLR-GLCKKGDQCEFLHEY-DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKE-GFCRGGPS  150 (325)
T ss_pred             cCCceeehhhhh-hhhhccCcCcchhhh-hhcccccccccccccccccccCCcccCCChhhhhhccchhhh-ccCCCcch
Confidence            457889999995 999999999999987 455555444322 111            10124578999999 99999999


Q ss_pred             CccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 033320           76 CKYDHPIHPDASAEYGLDPPPSFGDSTTR  104 (122)
Q Consensus        76 Crf~H~~~~~~~~~~~~~~~~~~~n~~~~  104 (122)
                      |+++|.....     .......||+....
T Consensus       151 c~~~h~~~~~-----c~~y~~gfC~~g~q  174 (325)
T KOG1040|consen  151 CKKRHERKVL-----CPPYNAGFCPKGPQ  174 (325)
T ss_pred             hhhhhhcccC-----CCchhhhhccCCCC
Confidence            9999998854     33334556666544

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=98.65  E-value=9.6e-09  Score=88.14  Aligned_cols=88  Identities=15%  Similarity=0.421  Sum_probs=61.8

Q ss_pred             Ccccccccccc--ccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccC--CCCCCCC
Q 033320           11 GQPECSYFLRT--GDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYD--HPIHPDA   86 (122)
Q Consensus        11 ~~~~Cr~f~k~--G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~--H~~~~~~   86 (122)
                      ...+|......  -.|.||++|+|.||.+.+...+..++.          +.|++|...|+|++|-+|||.  |...+..
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig----------~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~  144 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG----------PSCPVFESLGFCPYGFKCRFLGAHLDIEGN  144 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC----------CccceeeccccCCccceeehhhcccCcccc
Confidence            46799999853  269999999999998876544433332          789999999999999999998  7766553


Q ss_pred             CC-----CCCCCCCCCCCCCCcccccc
Q 033320           87 SA-----EYGLDPPPSFGDSTTRQETG  108 (122)
Q Consensus        87 ~~-----~~~~~~~~~~~n~~~~~~~~  108 (122)
                      .-     -.-...+.+.+|.-+.++|.
T Consensus       145 ~~~~kek~~d~~~~~~t~N~~s~elq~  171 (614)
T KOG2333|consen  145 NLIQKEKDPDGQFPPTTKNGVSKELQV  171 (614)
T ss_pred             chhhhhhCcccCCCCccccccCHHHHH
Confidence            20     01112345555666565554

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.62  E-value=6e-09  Score=56.31  Aligned_cols=26  Identities=31%  Similarity=0.954  Sum_probs=20.8

Q ss_pred             CCcccccccCcCcCCCCCCCccCCCC
Q 033320           57 GQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      ++.+|++|+++|.|++|++|+|+|+.
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             ccccChhhccCCccCCCCCcCccCCC
Confidence            46899999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.57  E-value=1.1e-07  Score=76.62  Aligned_cols=82  Identities=34%  Similarity=0.796  Sum_probs=63.0

Q ss_pred             CCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCC-CCCCccCCCCC
Q 033320            5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKF-GPACKYDHPIH   83 (122)
Q Consensus         5 ~~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~-G~~Crf~H~~~   83 (122)
                      .+++++....|.+|.+.+.|.+++.|+|.|..................+.+.++++|.+|.+.|.|+| |++|+|.|...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~  158 (332)
T KOG1677|consen   79 PYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLE  158 (332)
T ss_pred             cCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcc
Confidence            46777766899999999999999999999996332221110001122355678899999999999999 99999999998


Q ss_pred             CCC
Q 033320           84 PDA   86 (122)
Q Consensus        84 ~~~   86 (122)
                      ++-
T Consensus       159 e~r  161 (332)
T KOG1677|consen  159 ELR  161 (332)
T ss_pred             ccc
Confidence            885

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.53  E-value=1.3e-07  Score=77.02  Aligned_cols=65  Identities=25%  Similarity=0.593  Sum_probs=54.3

Q ss_pred             cccccccccccCCC---CCCCCCC---CCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           13 PECSYFLRTGDCKY---KSNCKYH---HPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        13 ~~Cr~f~k~G~C~~---G~~C~F~---H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .+|.-|.+.|.|.+   |+.|.|+   |...+.......        ...++.+|..|.+.|.|+||.+|.|+|....+
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~--------~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~  301 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKK--------QNFRTEPCINWEKSGYCPYGLRCCFKHGDDSD  301 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccccc--------cccccCCccchhhcccCccccccccccCChhh
Confidence            78999988999999   9999999   997764322211        23568999999999999999999999998777

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.43  E-value=9.1e-08  Score=78.31  Aligned_cols=60  Identities=30%  Similarity=0.571  Sum_probs=47.2

Q ss_pred             CccccccccccccCCCCCC-CCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKSN-CKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~-C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .-.+||.|+| |.|.+|++ |+|+|......      ++      .-+-..|.-|++ |.|.. ++|||.|+...+
T Consensus        36 ~~eVCReF~r-n~C~R~d~~CkfaHP~~~~~------V~------~g~v~aC~Ds~k-grCsR-~nCkylHpp~hl   96 (331)
T KOG2494|consen   36 TLEVCREFLR-NTCSRGDRECKFAHPPKNCQ------VS------NGRVIACFDSQK-GRCSR-ENCKYLHPPQHL   96 (331)
T ss_pred             HHHHHHHHHh-ccccCCCccccccCCCCCCC------cc------CCeEEEEecccc-CccCc-ccceecCCChhh
Confidence            3469999997 99999999 99999975321      11      123467999999 99986 559999998776

>smart00356 ZnF_C3H1 zinc finger

Probab=98.36  E-value=3.1e-07  Score=48.50  Aligned_cols=26  Identities=35%  Similarity=0.853  Sum_probs=22.5

Q ss_pred             CCccccccccccccCCCCCCCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPK   36 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~   36 (122)
                      .++.+|++|. .|.|.+|++|+|+|+.
T Consensus         2 ~k~~~C~~~~-~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFK-RGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence            3567999995 7999999999999973

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.23  E-value=6e-07  Score=73.78  Aligned_cols=81  Identities=25%  Similarity=0.607  Sum_probs=61.2

Q ss_pred             CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCC--------CCCCcccccccCcCcCCCCCC
Q 033320            4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL--------RPGQNVCSYYSRYGICKFGPA   75 (122)
Q Consensus         4 ~~~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~--------~~~~~~C~~f~~~G~C~~G~~   75 (122)
                      ++| .-.++..|.||...|.|..|..|.|.|.... .....|.++..|+..        .....+|..|.. |+|+-|.+
T Consensus        98 he~-~~~k~rec~ff~~~g~c~~~~~c~y~h~dpq-t~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~~-gfC~~g~q  174 (325)
T KOG1040|consen   98 HEY-DLTKMRECKFFSLFGECTNGKDCPYLHGDPQ-TAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPYNA-GFCPKGPQ  174 (325)
T ss_pred             hhh-hhcccccccccccccccccccCCcccCCChh-hhhhccchhhhccCCCcchhhhhhhcccCCCchhh-hhccCCCC
Confidence            345 4467789999998999999999999998632 223345555555311        123489999998 99999999


Q ss_pred             -CccCCCCCCCCC
Q 033320           76 -CKYDHPIHPDAS   87 (122)
Q Consensus        76 -Crf~H~~~~~~~   87 (122)
                       |.+.|....+..
T Consensus       175 ~c~~~hp~~~~~~  187 (325)
T KOG1040|consen  175 RCDMLHPEFQQPP  187 (325)
T ss_pred             cccccCCCCCCCh
Confidence             999999988865

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=98.23  E-value=2.1e-07  Score=73.87  Aligned_cols=78  Identities=27%  Similarity=0.584  Sum_probs=56.7

Q ss_pred             CCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCC------CC-----CCCCCCcccccccC------cC-
Q 033320            7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDK------GL-----PLRPGQNVCSYYSR------YG-   68 (122)
Q Consensus         7 ~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~------g~-----p~~~~~~~C~~f~~------~G-   68 (122)
                      .+.|++.+|..|. .+.|..|+.|+|+|+....+.....+|+..      .+     |.-....+|+||..      +| 
T Consensus        80 gvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw  158 (299)
T COG5252          80 GVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW  158 (299)
T ss_pred             ccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence            4679999999998 799999999999999765444333333321      11     22234679999984      34 


Q ss_pred             --cCCCC-CCCccCCCCCCC
Q 033320           69 --ICKFG-PACKYDHPIHPD   85 (122)
Q Consensus        69 --~C~~G-~~Crf~H~~~~~   85 (122)
                        .|++| .+|.|.|..+..
T Consensus       159 ~W~CPng~~~C~y~H~Lp~G  178 (299)
T COG5252         159 GWTCPNGNMRCSYIHKLPDG  178 (299)
T ss_pred             eeeCCCCCceeeeeeccCcc
Confidence              49998 789999998874

>smart00356 ZnF_C3H1 zinc finger

Probab=98.14  E-value=1.9e-06  Score=45.37  Aligned_cols=25  Identities=36%  Similarity=1.216  Sum_probs=21.5

Q ss_pred             CCcccccccCcCcCCCCCCCccCCCC
Q 033320           57 GQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      +..+|++|.. |.|++|++|+|.|..
T Consensus         3 k~~~C~~~~~-g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFKR-GYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCccC-CCCCCCCCcCCCCcC
Confidence            3568999965 999999999999974

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=97.97  E-value=5.4e-06  Score=66.09  Aligned_cols=74  Identities=28%  Similarity=0.639  Sum_probs=54.5

Q ss_pred             CCCCCccccccccccccCCCCCCCCCCCCCCCCCCCC-----------CCccCCCCCCCCCCCcccccccCcCcCCCCCC
Q 033320            7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSP-----------PCTLSDKGLPLRPGQNVCSYYSRYGICKFGPA   75 (122)
Q Consensus         7 ~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~-----------~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~   75 (122)
                      .-.|..+.||||.-.|.|-.|..|+|.|.+.+....|           .|.++..-.|  ++.+.|++|+- |.|. ..+
T Consensus       201 gnspsavycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldp--rripacryfll-gkcn-npn  276 (377)
T KOG1492|consen  201 GNSPSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDP--RRIPACRYFLL-GKCN-NPN  276 (377)
T ss_pred             CCCCceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCc--cccchhhhhhh-ccCC-CCC
Confidence            3457888999998789999999999999987654432           2333221112  35688999998 9996 789


Q ss_pred             CccCCCCCC
Q 033320           76 CKYDHPIHP   84 (122)
Q Consensus        76 Crf~H~~~~   84 (122)
                      |||.|..-.
T Consensus       277 cryvhihys  285 (377)
T KOG1492|consen  277 CRYVHIHYS  285 (377)
T ss_pred             ceEEEEeec
Confidence            999986543

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.87  E-value=1.6e-05  Score=65.11  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDAS   87 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~~   87 (122)
                      ..++.+|..|.+.|.|+||.+|.|.|..+....... .     ........+|+-++.+|.|++|..|.+.|....+..
T Consensus       271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~-~-----~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~  343 (351)
T COG5063         271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE-E-----ASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDF  343 (351)
T ss_pred             ccccCCccchhhcccCccccccccccCChhhccccc-c-----ccccccccccccccccCccCCCCchhhccccchhhh
Confidence            356789999999999999999999998764221110 0     000134578999999999999999999999988754

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=97.83  E-value=7.9e-06  Score=65.15  Aligned_cols=71  Identities=27%  Similarity=0.685  Sum_probs=47.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCC---C--------CCCCCcccccccCcCcCCCCCCCccCC
Q 033320           12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL---P--------LRPGQNVCSYYSRYGICKFGPACKYDH   80 (122)
Q Consensus        12 ~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~---p--------~~~~~~~C~~f~~~G~C~~G~~Crf~H   80 (122)
                      ..+|.-|+ .|.|...+.|..+|..++.+ .|.|...-.|.   |        -....++|.-|+++|+|-.|..|+-.|
T Consensus       233 kticpkfl-ngrcnkaedcnlsheldprr-ipacryfllgkcnnpncryvhihysenapicfefakygfcelgtscknqh  310 (377)
T KOG1492|consen  233 KTICPKFL-NGRCNKAEDCNLSHELDPRR-IPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQH  310 (377)
T ss_pred             cccChHHh-cCccCchhcCCcccccCccc-cchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceeccccccccce
Confidence            45777777 57788777788888766532 22222211110   1        123578999999999999999999999


Q ss_pred             CCCC
Q 033320           81 PIHP   84 (122)
Q Consensus        81 ~~~~   84 (122)
                      ...-
T Consensus       311 ilqc  314 (377)
T KOG1492|consen  311 ILQC  314 (377)
T ss_pred             eeee
Confidence            7653

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.77  E-value=3.5e-05  Score=62.46  Aligned_cols=75  Identities=31%  Similarity=0.689  Sum_probs=52.9

Q ss_pred             CCccccccccccccCCCCCCCCCCCCCCCCCC-CCCCccC-CCC---------CC---CCCCCcccccccC--cCcCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPKNRIPK-SPPCTLS-DKG---------LP---LRPGQNVCSYYSR--YGICKFG   73 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~-~~~~~~~-~~g---------~p---~~~~~~~C~~f~~--~G~C~~G   73 (122)
                      ...++|++|+ .|.|+.|..|.|+|..+.... .++|... ..|         ..   .......|.+|..  +++|+.|
T Consensus       102 ~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g  180 (285)
T COG5084         102 SSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLG  180 (285)
T ss_pred             cCCcccchhc-cccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCC
Confidence            5678999998 599999999999999875442 2233211 111         10   1123567999984  5999999


Q ss_pred             CCCccCCCCCCC
Q 033320           74 PACKYDHPIHPD   85 (122)
Q Consensus        74 ~~Crf~H~~~~~   85 (122)
                      ..|++.|.....
T Consensus       181 ~~c~~~H~~~~~  192 (285)
T COG5084         181 ASCKFSHTLKRV  192 (285)
T ss_pred             Cccccccccccc
Confidence            999999999855

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=97.54  E-value=4.5e-05  Score=64.53  Aligned_cols=60  Identities=20%  Similarity=0.485  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCCCCC---CCCCCccCC-CC------CCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           25 KYKSNCKYHHPKNRIP---KSPPCTLSD-KG------LPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        25 ~~G~~C~F~H~~~~~~---~~~~~~~~~-~g------~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .-|++|.+-|..+.-.   +.-.+.+.+ .+      .|......+|+||+. |.|+||.+|||+|...-.
T Consensus        97 L~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~  166 (486)
T KOG2185|consen   97 LDGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLDVP  166 (486)
T ss_pred             ccCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhhc-cccccCcccccccCcccc
Confidence            3489999999866421   100000000 11      255556789999999 999999999999987544

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.41  E-value=0.00017  Score=62.49  Aligned_cols=55  Identities=20%  Similarity=0.559  Sum_probs=38.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           23 DCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        23 ~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .|.-+..|.|+|..+..+...+..+       .....+|+.|.+ |.|..|+.|.|.|..-+.
T Consensus       208 ~shDwteCPf~HpgEkARRRDPRky-------hYs~tpCPefrk-G~C~rGD~CEyaHgvfEc  262 (528)
T KOG1595|consen  208 RSHDWTECPFAHPGEKARRRDPRKY-------HYSSTPCPEFRK-GSCERGDSCEYAHGVFEC  262 (528)
T ss_pred             cCCCcccCCccCCCcccccCCcccc-------cccCccCccccc-CCCCCCCccccccceehh
Confidence            4566788999997543222111111       145688999998 999999999999977665

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=97.36  E-value=7.4e-05  Score=63.26  Aligned_cols=31  Identities=29%  Similarity=0.896  Sum_probs=27.0

Q ss_pred             CCCCCCccccccccccccCCCCCCCCCCCCCC
Q 033320            6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus         6 ~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      +|.-..+.+|.||+ .|.|+||.+|||+|...
T Consensus       134 ~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  134 TPTHESMKPCKFFL-EGRCRFGENCRFSHGLD  164 (486)
T ss_pred             cCcchhhccchHhh-ccccccCcccccccCcc
Confidence            46566788999999 69999999999999864

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=8.5e-05  Score=64.18  Aligned_cols=71  Identities=21%  Similarity=0.533  Sum_probs=52.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCC-------------CCCCcccccccCcCc-CCCCCCCc
Q 033320           12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL-------------RPGQNVCSYYSRYGI-CKFGPACK   77 (122)
Q Consensus        12 ~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~-------------~~~~~~C~~f~~~G~-C~~G~~Cr   77 (122)
                      .+.|+||+ .-.|++++.|.|.|..+.......|.+...+++-             .++..+|.++.+ +. |. -++|-
T Consensus         3 ~~dcyff~-ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~k~C~YRHSe~~~kr~e~~CYwe~~-p~gC~-k~~Cg   79 (667)
T KOG4791|consen    3 GEDCYFFF-YSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCRKVCRYRHSEIDKKRSEIPCYWENQ-PTGCQ-KLNCG   79 (667)
T ss_pred             cccchhhh-hhhhhccCcCcchhhHHHhcCcchhhhhhhcCcccccccchhhHHhhhcCcccceeecC-CCccC-CCccc
Confidence            46899998 6899999999999997665554455444333211             135678999998 77 86 68999


Q ss_pred             cCCCCCCC
Q 033320           78 YDHPIHPD   85 (122)
Q Consensus        78 f~H~~~~~   85 (122)
                      |+|..+++
T Consensus        80 fRH~~pPL   87 (667)
T KOG4791|consen   80 FRHNRPPL   87 (667)
T ss_pred             cccCCCch
Confidence            99987666

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.34  E-value=0.00022  Score=61.79  Aligned_cols=61  Identities=26%  Similarity=0.537  Sum_probs=49.5

Q ss_pred             CCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..-.+|.-|.+ |.|..||.|.|+|..-+      |.|    .|++.++..|+--   |.|+. .=|-|+|...++
T Consensus       234 Ys~tpCPefrk-G~C~rGD~CEyaHgvfE------cwL----HPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqL  294 (528)
T KOG1595|consen  234 YSSTPCPEFRK-GSCERGDSCEYAHGVFE------CWL----HPARYRTRKCKDG---GYCPR-RVCFFAHSPEQL  294 (528)
T ss_pred             ccCccCccccc-CCCCCCCccccccceeh------hhc----CHHHhccccccCC---CCCcc-ceEeeecChHHh
Confidence            45679999985 99999999999999754      222    2556788999874   88998 789999998877

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.31  E-value=0.00088  Score=54.41  Aligned_cols=67  Identities=21%  Similarity=0.438  Sum_probs=42.1

Q ss_pred             CCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC---CCC--------------CCCCCCcccccccCcCcCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSD---KGL--------------PLRPGQNVCSYYSRYGICKF   72 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~---~g~--------------p~~~~~~~C~~f~~~G~C~~   72 (122)
                      +-...|++|...|.|..|..|.+.|..... ....++.+.   .++              .......+|.+|+- ++|+.
T Consensus       132 s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~-~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~~~~~p~~~y~~-~fsP~  209 (285)
T COG5084         132 SQGPPCRSFSLKGSCSSGPSCGYSHIDPDS-FAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYGSSPCGNYTP-PFSPP  209 (285)
T ss_pred             ccCCCcccccccceeccCCCCCccccCccc-ccccccccCcccccccCCCCccccccccccccccccccccCcC-CcCCC
Confidence            357899999547999999999999985221 112222221   111              01111227999998 99998


Q ss_pred             CCCCcc
Q 033320           73 GPACKY   78 (122)
Q Consensus        73 G~~Crf   78 (122)
                      |..=-+
T Consensus       210 g~~~~~  215 (285)
T COG5084         210 GTPSES  215 (285)
T ss_pred             CCCccc
Confidence            875433

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=97.18  E-value=0.00026  Score=35.26  Aligned_cols=19  Identities=32%  Similarity=0.908  Sum_probs=16.6

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 033320           14 ECSYFLRTGDCKYKSNCKYHHP   35 (122)
Q Consensus        14 ~Cr~f~k~G~C~~G~~C~F~H~   35 (122)
                      +|+||..   |++|++|.|+|.
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            5998872   999999999995

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=97.05  E-value=0.00041  Score=34.51  Aligned_cols=19  Identities=32%  Similarity=0.978  Sum_probs=16.7

Q ss_pred             ccccccCcCcCCCCCCCccCCC
Q 033320           60 VCSYYSRYGICKFGPACKYDHP   81 (122)
Q Consensus        60 ~C~~f~~~G~C~~G~~Crf~H~   81 (122)
                      +|+||..   |++|++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            5888875   999999999995

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.00  E-value=0.00021  Score=55.87  Aligned_cols=32  Identities=25%  Similarity=0.603  Sum_probs=27.2

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCCCCC
Q 033320            8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI   39 (122)
Q Consensus         8 ~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~   39 (122)
                      ......+|+.|..+|.|-||+.|+|+|+.+..
T Consensus       137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             eecCcccccchhhcccccCCchhhhhhhhhhh
Confidence            34456799999889999999999999998754

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=96.30  E-value=0.0013  Score=54.23  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             CCcccccccCcCcCCCCCC-CccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 033320           57 GQNVCSYYSRYGICKFGPA-CKYDHPIHPDASAEYGLDPPPSFGDSTTR  104 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~~-Crf~H~~~~~~~~~~~~~~~~~~~n~~~~  104 (122)
                      ...+||-|++ |.|..|++ |+|.|+.....    ++.-.-.+|-|+.+
T Consensus        36 ~~eVCReF~r-n~C~R~d~~CkfaHP~~~~~----V~~g~v~aC~Ds~k   79 (331)
T KOG2494|consen   36 TLEVCREFLR-NTCSRGDRECKFAHPPKNCQ----VSNGRVIACFDSQK   79 (331)
T ss_pred             HHHHHHHHHh-ccccCCCccccccCCCCCCC----ccCCeEEEEecccc
Confidence            4579999999 99999999 99999998663    33334556666544

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.0045  Score=51.48  Aligned_cols=25  Identities=40%  Similarity=1.145  Sum_probs=24.0

Q ss_pred             cccccccCcCcCCCCCCCccCCCCCC
Q 033320           59 NVCSYYSRYGICKFGPACKYDHPIHP   84 (122)
Q Consensus        59 ~~C~~f~~~G~C~~G~~Crf~H~~~~   84 (122)
                      .+|++|++ |.|+||+.|||.|+.+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            89999999 99999999999999984

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.0047  Score=51.37  Aligned_cols=24  Identities=29%  Similarity=0.908  Sum_probs=22.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q 033320           13 PECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus        13 ~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      .+|+||++ |.|++|+.|+|+|+..
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCc
Confidence            79999996 9999999999999976

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.33  E-value=0.0057  Score=47.92  Aligned_cols=28  Identities=32%  Similarity=0.742  Sum_probs=24.8

Q ss_pred             CcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           58 QNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        58 ~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..+|+-|..+|+|-||+.|+|.|.+...
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhh
Confidence            3579999999999999999999988743

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.0068  Score=49.57  Aligned_cols=30  Identities=27%  Similarity=0.613  Sum_probs=26.5

Q ss_pred             CCccccccccccccCCCCCCCCCCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPKNRI   39 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~   39 (122)
                      ....+|+.|..+|.|-||+.|+|+|+...+
T Consensus       184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            455799999889999999999999998765

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=93.94  E-value=0.017  Score=47.51  Aligned_cols=30  Identities=30%  Similarity=0.892  Sum_probs=26.2

Q ss_pred             CCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           55 RPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        55 ~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .+.+.+|.||.. |.|..|+.|+|+|.....
T Consensus        89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~  118 (343)
T KOG1763|consen   89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVE  118 (343)
T ss_pred             CchHHHHHHHhc-cCCCCCCcccccchHHHh
Confidence            356789999998 999999999999987554

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=93.58  E-value=0.024  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.680  Sum_probs=26.8

Q ss_pred             CCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 033320            6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNR   38 (122)
Q Consensus         6 ~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~   38 (122)
                      |......+-|.||.++|.|++|+.|-=.|....
T Consensus         9 fgtekdKv~c~fy~k~gacR~gdrcsR~h~kpt   41 (260)
T KOG2202|consen    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHEKPT   41 (260)
T ss_pred             hcccccccccchHHhhcccccccHHHHhhcccc
Confidence            334456788999999999999999988887644

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.028  Score=46.06  Aligned_cols=28  Identities=29%  Similarity=0.758  Sum_probs=24.8

Q ss_pred             CcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           58 QNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        58 ~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..+|+-|..||+|-||++|+|.|.+...
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhhc
Confidence            3579999999999999999999988644

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=92.76  E-value=0.073  Score=27.79  Aligned_cols=22  Identities=36%  Similarity=0.913  Sum_probs=18.1

Q ss_pred             cccccccccccCCCCCCCCCCCC
Q 033320           13 PECSYFLRTGDCKYKSNCKYHHP   35 (122)
Q Consensus        13 ~~Cr~f~k~G~C~~G~~C~F~H~   35 (122)
                      ++|.|-+..|.|.. +.|.|.|-
T Consensus         1 ~lC~yEl~Gg~Cnd-~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVCND-PDCEFQHF   22 (23)
T ss_pred             CCCccccCCCeeCC-CCCCcccc
Confidence            48999996559986 77999995

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=91.76  E-value=0.11  Score=43.50  Aligned_cols=33  Identities=33%  Similarity=0.828  Sum_probs=28.5

Q ss_pred             CCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 033320            4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus         4 ~~~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      ..|..+....+|.||++ |.|++|+.|.|.|...
T Consensus       153 ~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp  185 (377)
T KOG0153|consen  153 TPYYKRNRPHICSFFVK-GECKRGAECPYRHEKP  185 (377)
T ss_pred             CccccCCCCccccceee-ccccccccccccccCC
Confidence            45567778889999995 8999999999999865

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.57  E-value=0.27  Score=43.05  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             Ccccccccccccc-CCCCCCCCCCCCCCCCC----CCC-CCccCCCC--C--C---CCCCCcccccccCcCcCCCCCCCc
Q 033320           11 GQPECSYFLRTGD-CKYKSNCKYHHPKNRIP----KSP-PCTLSDKG--L--P---LRPGQNVCSYYSRYGICKFGPACK   77 (122)
Q Consensus        11 ~~~~Cr~f~k~G~-C~~G~~C~F~H~~~~~~----~~~-~~~~~~~g--~--p---~~~~~~~C~~f~~~G~C~~G~~Cr   77 (122)
                      ....|+|+.+ +. |.. .+|-|.|...++.    ..+ +......+  +  +   ....-.+|-+|++ |.|-.++-|-
T Consensus        60 ~e~~CYwe~~-p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K-~~e~~~D~~s  136 (667)
T KOG4791|consen   60 SEIPCYWENQ-PTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSNPSPQLRSVK-KVESSEDVPS  136 (667)
T ss_pred             CcccceeecC-CCccCC-CccccccCCCchhhhccCCCCCcccccccccccCCCcccccCCchHHHHhh-hhhhhccccc
Confidence            5678999985 66 996 8999999543321    111 00011111  0  0   1112357999999 9999999999


Q ss_pred             cCCCCCCC
Q 033320           78 YDHPIHPD   85 (122)
Q Consensus        78 f~H~~~~~   85 (122)
                      |.|+....
T Consensus       137 ~Lh~P~A~  144 (667)
T KOG4791|consen  137 PLHPPVAI  144 (667)
T ss_pred             cCCCCccc
Confidence            99988554

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=84.67  E-value=0.51  Score=39.65  Aligned_cols=27  Identities=41%  Similarity=1.048  Sum_probs=24.3

Q ss_pred             CcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           58 QNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        58 ~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..+|.||.. |.|+.|+.|.|.|..++.
T Consensus       161 p~Icsf~v~-geckRG~ec~yrhEkp~d  187 (377)
T KOG0153|consen  161 PHICSFFVK-GECKRGAECPYRHEKPPD  187 (377)
T ss_pred             Cccccceee-ccccccccccccccCCCC
Confidence            458999999 999999999999999954

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=82.07  E-value=2.1  Score=38.61  Aligned_cols=25  Identities=36%  Similarity=0.911  Sum_probs=18.4

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKSNCKYHHPKNRI   39 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~   39 (122)
                      ..+-|.|=.+   |.. ..|.|+|.....
T Consensus       584 s~p~Ck~~~k---Cta-sDC~~sH~~~~~  608 (681)
T KOG3702|consen  584 SHPGCKFGKK---CTA-SDCNYSHAGRRI  608 (681)
T ss_pred             cccccccccc---ccc-ccCcccccCCCC
Confidence            4557888864   888 569999987654

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=80.61  E-value=0.7  Score=37.21  Aligned_cols=28  Identities=25%  Similarity=0.566  Sum_probs=24.3

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      ++....|..|.+ +.|.+|..|.|.|...
T Consensus       149 ~~rea~C~~~e~-~~C~rG~~CnFmH~k~  176 (260)
T KOG2202|consen  149 DFREAICGQFER-TECSRGGACNFMHVKR  176 (260)
T ss_pred             chhhhhhccccc-ccCCCCCcCcchhhhh
Confidence            466779999995 7999999999999963

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=80.53  E-value=3.9  Score=36.99  Aligned_cols=58  Identities=29%  Similarity=0.661  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCCCCCCC---CCCCccCCCC--CCC-----------CCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           24 CKYKSNCKYHHPKNRIPK---SPPCTLSDKG--LPL-----------RPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        24 C~~G~~C~F~H~~~~~~~---~~~~~~~~~g--~p~-----------~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      |.+++.|.++|..-...+   ...|.+...+  .|.           .....+|+|+-   .|+ -..|+|.|+..--
T Consensus       575 k~fa~~~~ks~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~p---nCr-nm~C~F~HPk~cR  648 (681)
T KOG3702|consen  575 KKFASKCLKSHPGCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYRP---NCR-NMQCKFYHPKTCR  648 (681)
T ss_pred             ccccccceecccccccccccccccCcccccCCCCCCccccCCCCCCCCCccccceecc---CcC-CccccccCCcccc
Confidence            788999999998643221   2334332211  111           11234566643   354 3567888877655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-11
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	5e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 54.6 bits (131), Expect = 2e-11
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGP 74
          C  +  +G C+Y + C++ H    + ++            +    +C  +   G C +G 
Sbjct: 15 CRTYSESGRCRYGAKCQFAHGLGELRQANRHP--------KYKTELCHKFKLQGRCPYGS 66

Query: 75 ACKYDHPIHPD 85
           C + H    D
Sbjct: 67 RCHFIHNPTED 77

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 23/66 (34%)

Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGP 74
          C +++  G C    NC Y H                          C  Y   G C  G 
Sbjct: 16 CKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGD 52

Query: 75 ACKYDH 80
           C + H
Sbjct: 53 DCMFSH 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.68
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.6
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.59
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.56
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.39
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.36
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	99.27
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	99.15
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.34
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.15
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.03
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.86
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.86
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.66
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.63
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.33
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.32
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.2
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.19
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.14
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.97
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.78
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	96.61
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	96.32
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.74
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	87.14
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	86.49
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	82.91

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.68  E-value=1.3e-17  Score=108.24  Aligned_cols=69  Identities=19%  Similarity=0.551  Sum_probs=29.2

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCC
Q 033320            8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHP   84 (122)
Q Consensus         8 ~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~   84 (122)
                      .+.++.+|++|++.|.|++|++|+|+|+..+......        .....+.+|++|..+|.|++|++|+|+|...+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            4578899999987899999999999999876432110        01234689998876799999999999998765

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=5.3e-16  Score=101.69  Aligned_cols=60  Identities=25%  Similarity=0.577  Sum_probs=51.5

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320            8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDA   86 (122)
Q Consensus         8 ~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~   86 (122)
                      ...++++|+||++ |.|++|++|+|+|+.+.                 .+.++|++|+++|.|. |++|+|.|..++..
T Consensus         6 ~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~-----------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            6 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------TKMPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             SCCTTSBCHHHHT-TCCSCTTSSSSBCSCCT-----------------TTSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             CCCcceeCHhHcc-CcCCCCCCCCCcccccc-----------------CcCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            3457889999995 99999999999999763                 2357899999889999 99999999987653

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.59  E-value=8.4e-16  Score=105.23  Aligned_cols=59  Identities=25%  Similarity=0.531  Sum_probs=51.4

Q ss_pred             CCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCC
Q 033320            3 VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus         3 ~~~~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      .+++..+.++.+|+||+ .|.|++|++|+|+|+                      ..+|++|+..|.|++|++|+|.|..
T Consensus         4 sH~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~   60 (98)
T 2cqe_A            4 GSSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDP   60 (98)
T ss_dssp             CCCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             cccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence            45667778999999998 699999999999999                      1689999755999999999999986


Q ss_pred             CC
Q 033320           83 HP   84 (122)
Q Consensus        83 ~~   84 (122)
                      ..
T Consensus        61 ~~   62 (98)
T 2cqe_A           61 LT   62 (98)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.56  E-value=9.5e-16  Score=99.66  Aligned_cols=60  Identities=25%  Similarity=0.557  Sum_probs=51.3

Q ss_pred             CCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320            7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus         7 ~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ....++++|+||++ |.|++|++|+|+|+.+.                 .+.++|+||+++|.|.+ ++|+|.|+.+..
T Consensus        11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~-----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------TKMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT-----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             CCCCcCeeCHHHhc-CCCCCCCCCCCcccccc-----------------ccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            45577899999995 99999999999999753                 23579999998899999 999999998764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.39  E-value=1.1e-13  Score=89.15  Aligned_cols=62  Identities=26%  Similarity=0.561  Sum_probs=48.7

Q ss_pred             CccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      +..+|++|+ .|.|.+|+ .|+|+|+.......          +...+.++|.+|++ |.|..| +|+|.|+.+.+
T Consensus         5 k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A            5 RLEVCREYQ-RGNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             EEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             cchhCHHHh-cCCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence            467999998 59999999 59999997643210          01234689999999 999999 99999987643

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-13  Score=94.57  Aligned_cols=64  Identities=28%  Similarity=0.565  Sum_probs=51.2

Q ss_pred             CCCccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..+..+|++|++ |.|.+|+ .|+|+|+.+.....          +.....++|.+|++ |.|.+| +|+|.|+.+.+
T Consensus        17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred             hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence            346789999996 9999999 79999998653211          11235689999999 999999 99999998655

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=99.27  E-value=1.4e-12  Score=86.96  Aligned_cols=61  Identities=28%  Similarity=0.503  Sum_probs=49.5

Q ss_pred             CCccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .+..+|++|++ |.|.+|+ .|+|+|+.......            ....++|..|++ |.|..+ .|+|.|+...+
T Consensus         7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A            7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred             ccchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence            45689999996 9999997 99999998643211            123589999999 999998 99999998655

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=99.15  E-value=9.6e-12  Score=83.89  Aligned_cols=61  Identities=28%  Similarity=0.523  Sum_probs=49.5

Q ss_pred             CccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDA   86 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~   86 (122)
                      +..+|++|++ |.|.+|+ .|+|+|+.......            ....++|..|++ |.|..+ .|+|.|+...+.
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~hl~   77 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPTHLK   77 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHHHH
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHHHHH
Confidence            4679999996 9999998 99999998653211            123589999999 999998 899999987553

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=2e-07  Score=60.48  Aligned_cols=39  Identities=21%  Similarity=0.657  Sum_probs=32.4

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcC
Q 033320           11 GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYG   68 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G   68 (122)
                      ++++|+||++.|.|. |+.|+|+|....                 .++++|++|++ |
T Consensus        37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~-----------------~~~~~C~~f~~-g   75 (77)
T 2d9n_A           37 KMPECYFYSKFGECS-NKECPFLHIDPE-----------------SKIKDCPWSGP-S   75 (77)
T ss_dssp             TSCBCHHHHHTCCCC-CSSCSSBCCCTT-----------------SSCSSSSCCTT-T
T ss_pred             cCCCCcccCCCCccC-CCCeeccCCCcc-----------------ccCCCCccccc-C
Confidence            567999999669999 899999999753                 24589999997 5

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.15  E-value=1.3e-06  Score=55.87  Aligned_cols=31  Identities=26%  Similarity=0.698  Sum_probs=27.4

Q ss_pred             CCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320           56 PGQNVCSYYSRYGICKFGPACKYDHPIHPDA   86 (122)
Q Consensus        56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~   86 (122)
                      .++.+|++|+++|.|++|++|+|+|...++.
T Consensus        10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~   40 (77)
T 1m9o_A           10 YKTELCRTYSESGRCRYGAKCQFAHGLGELR   40 (77)
T ss_dssp             CCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             ccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence            4679999998669999999999999998764

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.03  E-value=3.5e-06  Score=57.17  Aligned_cols=26  Identities=27%  Similarity=0.724  Sum_probs=23.4

Q ss_pred             CCCcccccccCcCcCCCCCCCccCCCC
Q 033320           56 PGQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus        56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      .++.+|+||++ |.|++|++|+|+|..
T Consensus        11 ~k~~lC~~f~~-G~C~~G~~C~f~H~~   36 (98)
T 2cqe_A           11 KKRELCKFYIT-GFCARAENCPYMHGD   36 (98)
T ss_dssp             CCCSBCTTTTT-TCCSCSTTCSSBSSS
T ss_pred             CCCccCccccc-CcCCCCCCCCCCCCC
Confidence            45789999987 999999999999983

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.86  E-value=5.1e-06  Score=53.38  Aligned_cols=29  Identities=31%  Similarity=0.676  Sum_probs=25.3

Q ss_pred             CCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           56 PGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .+..+|++|++ |.|.+|++|+|+|.....
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~   42 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT   42 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCccccccc
Confidence            45689999999 999999999999996543

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.86  E-value=7.1e-06  Score=63.42  Aligned_cols=70  Identities=24%  Similarity=0.486  Sum_probs=47.4

Q ss_pred             ccccccccccccCC----CCCCCCCCCCCCCCCC----------------------------C-CCCccCCCCC------
Q 033320           12 QPECSYFLRTGDCK----YKSNCKYHHPKNRIPK----------------------------S-PPCTLSDKGL------   52 (122)
Q Consensus        12 ~~~Cr~f~k~G~C~----~G~~C~F~H~~~~~~~----------------------------~-~~~~~~~~g~------   52 (122)
                      --+|++|+ .|.|+    .+..|+|+|+....-+                            . +.|..| .|.      
T Consensus        89 LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C  166 (229)
T 3u9g_A           89 LHLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTC  166 (229)
T ss_dssp             BCCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSC
T ss_pred             eeechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcC
Confidence            35899999 69993    4588999999754110                            0 124445 431      


Q ss_pred             ---CCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           53 ---PLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        53 ---p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                         ....+--+|++|++ |.|+| .+|+-+|.....
T Consensus       167 ~~~~~C~kLHIC~~Fl~-G~C~f-~~CkRsH~~~~~  200 (229)
T 3u9g_A          167 GQPQPCERLHICEHFTR-GNCSY-LNCLRSHNLMDR  200 (229)
T ss_dssp             SSSSCCCSBCSCHHHHT-TCCCC-SSCSSCCCTTSH
T ss_pred             CCCCCCcceeccchhhc-CCcCC-CCccCccCccCc
Confidence               12234568999998 99999 799999987543

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.66  E-value=1.3e-05  Score=51.49  Aligned_cols=28  Identities=21%  Similarity=0.623  Sum_probs=24.5

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKSNCKYHHPKNRI   39 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~   39 (122)
                      +..+|+.|+ .|.|+||++|.|+|...++
T Consensus        19 k~~LC~~~~-~G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           19 YFSICDRYM-NGTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred             CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence            558999996 6999999999999997653

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.63  E-value=5.1e-06  Score=53.43  Aligned_cols=28  Identities=29%  Similarity=0.594  Sum_probs=24.7

Q ss_pred             CCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           57 GQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ...+|+.|.. |.|+||++|.|+|...++
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence            4589999965 999999999999988766

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.33  E-value=7.2e-05  Score=45.10  Aligned_cols=29  Identities=34%  Similarity=0.870  Sum_probs=26.2

Q ss_pred             CCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           57 GQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      .+.+|.-|..+|+|++|.+|.++|...-.
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~   47 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISGP   47 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCCC
Confidence            56899999999999999999999987654

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.32  E-value=7.5e-05  Score=47.40  Aligned_cols=27  Identities=37%  Similarity=0.929  Sum_probs=23.5

Q ss_pred             CcccccccCcCcCCCCC-CCccCCCCCCC
Q 033320           58 QNVCSYYSRYGICKFGP-ACKYDHPIHPD   85 (122)
Q Consensus        58 ~~~C~~f~~~G~C~~G~-~Crf~H~~~~~   85 (122)
                      ..+|++|++ |.|..|+ .|+|+|+....
T Consensus         6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~   33 (70)
T 3d2q_A            6 LEVCREYQR-GNCNRGENDCRFAHPADST   33 (70)
T ss_dssp             EEBCHHHHT-TCCSSCTTTCSSBCCCTTS
T ss_pred             chhCHHHhc-CCCCCCCCCCCCccCcccc
Confidence            479999998 9999999 59999987653

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.20  E-value=8.8e-05  Score=44.71  Aligned_cols=28  Identities=21%  Similarity=0.399  Sum_probs=25.9

Q ss_pred             CCccccccccccccCCCCCCCCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      ..+.+|.-|...|-|++|.+|.++|+.+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4788999998899999999999999976

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.19  E-value=0.00016  Score=47.61  Aligned_cols=27  Identities=33%  Similarity=0.797  Sum_probs=24.1

Q ss_pred             CCcccccccCcCcCCCCC-CCccCCCCCC
Q 033320           57 GQNVCSYYSRYGICKFGP-ACKYDHPIHP   84 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~-~Crf~H~~~~   84 (122)
                      +..+|+.|++ |.|..|+ .|+|+|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~   35 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKS   35 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence            3579999999 9999996 9999999865

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.14  E-value=0.00018  Score=48.11  Aligned_cols=28  Identities=32%  Similarity=0.757  Sum_probs=24.8

Q ss_pred             CCcccccccCcCcCCCCC-CCccCCCCCCC
Q 033320           57 GQNVCSYYSRYGICKFGP-ACKYDHPIHPD   85 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~-~Crf~H~~~~~   85 (122)
                      ...+|+.|++ |.|..|+ .|+|+|+....
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~   44 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSC   44 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence            3579999999 9999998 99999998763

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.97  E-value=0.0002  Score=48.47  Aligned_cols=27  Identities=30%  Similarity=0.790  Sum_probs=23.8

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      ...+++|++|++ |.|.+| +|+|+|...
T Consensus        53 ~~~~~vC~~flk-G~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           53 DNTVTVCMDYIK-GRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             TCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             CCccccchhhcc-CCCCCC-CcCccCChH
Confidence            356889999996 999999 999999964

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.78  E-value=0.00023  Score=46.86  Aligned_cols=62  Identities=23%  Similarity=0.538  Sum_probs=36.5

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCC----CCCCC-CCCcccccccCcCcCCCCCCCccCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDK----GLPLR-PGQNVCSYYSRYGICKFGPACKYDHPIHP   84 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~----g~p~~-~~~~~C~~f~~~G~C~~G~~Crf~H~~~~   84 (122)
                      ....|+||..   |.+ ..|.|.|....    ..|.++..    .-... +....|+|+..   |.. ..|.|.|+...
T Consensus         8 ~~e~CKf~~~---Ctn-~~C~f~Hp~~~----~~Cr~g~~C~~~~C~f~HP~~~~Crf~~~---C~n-~~C~F~Hp~g~   74 (80)
T 2lhn_A            8 SLEQCKFGTH---CTN-KRCKYRHARSH----IMCREGANCTRIDCLFGHPINEDCRFGVN---CKN-IYCLFRHPPGR   74 (80)
Confidence            4568999973   999 99999998642    11221110    00000 12356777664   765 67888886543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=96.61  E-value=0.00046  Score=53.32  Aligned_cols=27  Identities=33%  Similarity=0.971  Sum_probs=24.5

Q ss_pred             CcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           58 QNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        58 ~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..+|.||++ |.|++|..|.|.|..+..
T Consensus        70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~   96 (240)
T 3u1l_A           70 LFFCLFFAK-GMCCLGPKCEYLHHIPDE   96 (240)
T ss_dssp             CSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred             CeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence            469999999 999999999999988764

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=96.32  E-value=0.0008  Score=51.92  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=22.9

Q ss_pred             CccccccccccccCCCCCCCCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      ...+|.||.| |.|++|++|.|+|...
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSCC
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCCC
Confidence            4569999997 9999999999999853

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.74  E-value=0.0016  Score=42.68  Aligned_cols=18  Identities=28%  Similarity=0.765  Sum_probs=10.5

Q ss_pred             ccccccCcCcCCCCCCCccCCC
Q 033320           60 VCSYYSRYGICKFGPACKYDHP   81 (122)
Q Consensus        60 ~C~~f~~~G~C~~G~~Crf~H~   81 (122)
                      +|++++.   |.. ..|.|.|+
T Consensus        33 ~Cr~g~~---C~~-~~C~f~HP   50 (80)
T 2lhn_A           33 MCREGAN---CTR-IDCLFGHP   50 (80)
Confidence            5666554   554 55666665

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=87.14  E-value=0.21  Score=38.43  Aligned_cols=22  Identities=36%  Similarity=0.780  Sum_probs=10.8

Q ss_pred             cccccccccccCCCCCCCCCCCCC
Q 033320           13 PECSYFLRTGDCKYKSNCKYHHPK   36 (122)
Q Consensus        13 ~~Cr~f~k~G~C~~G~~C~F~H~~   36 (122)
                      -+|++|+ .|.|++ .+|+-+|+.
T Consensus       176 HIC~~Fl-~G~C~f-~~CkRsH~~  197 (229)
T 3u9g_A          176 HICEHFT-RGNCSY-LNCLRSHNL  197 (229)
T ss_dssp             CSCHHHH-TTCCCC-SSCSSCCCT
T ss_pred             eccchhh-cCCcCC-CCccCccCc
Confidence            3455554 355555 455555554

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=86.49  E-value=0.13  Score=39.36  Aligned_cols=26  Identities=31%  Similarity=0.926  Sum_probs=0.0

Q ss_pred             CCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           57 GQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        57 ~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..++|++-.+   |.||.+|+|.|+....
T Consensus       191 ~~~~~~~~~~---~~~~~~~~~~~~~~~~  216 (223)
T 3v33_A          191 RKQPCPYGRK---CTYGIKCRFFHPERPS  216 (223)
T ss_dssp             -----------------------------
T ss_pred             CCCCCCCCcc---cccCCcceecCCccCC
Confidence            4678998654   9999999999987654

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=82.91  E-value=0.24  Score=37.91  Aligned_cols=24  Identities=29%  Similarity=0.891  Sum_probs=0.0

Q ss_pred             CccccccccccccCCCCCCCCCCCCCC
Q 033320           11 GQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus        11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      +.++|.|=.   +|.||.+|+|.|...
T Consensus       191 ~~~~~~~~~---~~~~~~~~~~~~~~~  214 (223)
T 3v33_A          191 RKQPCPYGR---KCTYGIKCRFFHPER  214 (223)
T ss_dssp             ---------------------------
T ss_pred             CCCCCCCCc---ccccCCcceecCCcc
Confidence            578899864   599999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.76
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.7
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.68
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.65
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.56
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.55
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.15
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.1
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.56
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.5
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	96.75
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.77

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.7e-09  Score=61.49  Aligned_cols=34  Identities=21%  Similarity=0.623  Sum_probs=29.4

Q ss_pred             CCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 033320            7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIP   40 (122)
Q Consensus         7 ~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~   40 (122)
                      +.+.++.+|++|.+.|.|++|++|.|+|..++++
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4567889999998789999999999999987643

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-09  Score=60.23  Aligned_cols=29  Identities=24%  Similarity=0.589  Sum_probs=26.8

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKSNCKYHHPKN   37 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~   37 (122)
                      +.++.+|++|.+.|.|.+|++|.|+|..+
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            57899999999889999999999999875

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=5.7e-09  Score=59.29  Aligned_cols=31  Identities=29%  Similarity=0.755  Sum_probs=28.3

Q ss_pred             CCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320           55 RPGQNVCSYYSRYGICKFGPACKYDHPIHPD   85 (122)
Q Consensus        55 ~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~   85 (122)
                      ..++.+|++|.+.|.|++|++|.|+|...++
T Consensus         6 ~yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   36 (40)
T d1m9oa_           6 RYKTELCRTYSESGRCRYGAKCQFAHGLGEL   36 (40)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             ccccccChhhhcCCcCCCCCCCCCCCCHHHh
Confidence            3578999999988999999999999999887

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.3e-09  Score=60.75  Aligned_cols=32  Identities=28%  Similarity=0.650  Sum_probs=27.9

Q ss_pred             CCCccccccccccccCCCCCCCCCCCCCCCCC
Q 033320            9 RPGQPECSYFLRTGDCKYKSNCKYHHPKNRIP   40 (122)
Q Consensus         9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~   40 (122)
                      +.++.+|++|...|.|++|++|.|+|..++++
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            56889999998779999999999999987643

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5.1e-09  Score=57.60  Aligned_cols=29  Identities=24%  Similarity=0.766  Sum_probs=26.3

Q ss_pred             CCCcccccccCcCcCCCCCCCccCCCCCC
Q 033320           56 PGQNVCSYYSRYGICKFGPACKYDHPIHP   84 (122)
Q Consensus        56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~~~   84 (122)
                      .++.+|+.|...|.|+||++|.|+|...+
T Consensus         6 yKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           6 YKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             ccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            57899999998899999999999998754

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.7e-09  Score=58.82  Aligned_cols=32  Identities=28%  Similarity=0.737  Sum_probs=28.3

Q ss_pred             CCCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320           55 RPGQNVCSYYSRYGICKFGPACKYDHPIHPDA   86 (122)
Q Consensus        55 ~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~   86 (122)
                      ..++.+|++|...|.|++|++|.|+|...++-
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            35789999998779999999999999998873

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.2e-07  Score=47.07  Aligned_cols=25  Identities=32%  Similarity=0.805  Sum_probs=22.7

Q ss_pred             CCccccccccccccCCCCCCCCCCCC
Q 033320           10 PGQPECSYFLRTGDCKYKSNCKYHHP   35 (122)
Q Consensus        10 p~~~~Cr~f~k~G~C~~G~~C~F~H~   35 (122)
                      .+..+|+||+ +|.|.+|++|.|.|.
T Consensus         4 kkkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           4 KKRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhhe-eeeecCCcCcccccC
Confidence            3678999999 799999999999997

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1e-06  Score=45.94  Aligned_cols=26  Identities=27%  Similarity=0.724  Sum_probs=23.2

Q ss_pred             CCCcccccccCcCcCCCCCCCccCCCC
Q 033320           56 PGQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus        56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      .+..+|+||.+ |+|..|++|.|.|..
T Consensus         4 kkkelCKfYvq-GyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYIT-GFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTTT-TCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhhee-eeecCCcCcccccCC
Confidence            45689999999 999999999999963

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1e-05  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.792  Sum_probs=20.3

Q ss_pred             ccccccccccCCCCCCCCCCCCC
Q 033320           14 ECSYFLRTGDCKYKSNCKYHHPK   36 (122)
Q Consensus        14 ~Cr~f~k~G~C~~G~~C~F~H~~   36 (122)
                      +|+||-..+.|..|++|+|+|.+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69999866699999999999964

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.5e-05  Score=47.63  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=21.7

Q ss_pred             ccccccCcCcCCCCCCCccCCCCCC
Q 033320           60 VCSYYSRYGICKFGPACKYDHPIHP   84 (122)
Q Consensus        60 ~C~~f~~~G~C~~G~~Crf~H~~~~   84 (122)
                      +|+||...+.|..|++|+|+|....
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pLt   26 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPLT   26 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CcceeecCCcccCCCcccccCCccC
Confidence            7999998679999999999996543

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00022  Score=38.77  Aligned_cols=27  Identities=37%  Similarity=0.951  Sum_probs=24.2

Q ss_pred             CCCcccccccCcCcCCCCCCCccCCCC
Q 033320           56 PGQNVCSYYSRYGICKFGPACKYDHPI   82 (122)
Q Consensus        56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~   82 (122)
                      ..+.+|..|..+|+|+.|.+|..+|+.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            457899999999999999999999973

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.014  Score=31.32  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=25.1

Q ss_pred             CCCCccccccccccccCCCCCCCCCCCCC
Q 033320            8 ERPGQPECSYFLRTGDCKYKSNCKYHHPK   36 (122)
Q Consensus         8 ~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~   36 (122)
                      ..-.+.+|.-|.-.|-|..|.+|.-+|+.
T Consensus         9 ~~~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1           9 RPHPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CCCccchhhhhhhccccCCCCCCcccCcC
Confidence            44567899999778999999999999984