Citrus Sinensis ID: 033325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccEEEEEEEEccccHHHHHHcccEEEEEccccEEEcccccccEEEEEccccEEEEEEccHHHHHHHHHHHcccccccccccccEEccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccccccEEEEEEEEccccEEEEEccEEEEEccccccEEEcccccEEEEEEEccEEEEEEccHHHHHHHHHHHHcccccccccccEEEEccccccEHHcccccc
Coil and Loop (DISEMBL)
miypclfsgnlcykFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGyvhdveltvppavrVFCLknnvvcccgldkhrvhQFAAsvrsckppepfkgkgimytDEVIKKkvgkkksk
Flexible Loop (DISEMBL)
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFaasvrsckppepfkgkgimytdevikkkvgkkksk
Low Complexity Region (SEG)
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIkkkvgkkksk
Disordered region (IsUnstruct)
*IYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSC*******GKGIMYTDEV***********
Disordered Region (DISOPRED)
**Y****SGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKK*VGK****
Disordered Region (DISEMBL)
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIK*********
Disordered Region (DISPRO)
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
P26861	101	60S ribosomal protein L6,	N/A	no	0.827	1.0	0.643	2e-33
Q1GPB4	177	50S ribosomal protein L6	yes	no	0.836	0.576	0.451	6e-20
Q28UT9	177	50S ribosomal protein L6	yes	no	0.836	0.576	0.490	7e-20
Q38US6	177	50S ribosomal protein L6	yes	no	0.762	0.525	0.463	7e-20
Q8EUC8	183	50S ribosomal protein L6	yes	no	0.877	0.584	0.449	9e-20
Q2N9C6	177	50S ribosomal protein L6	yes	no	0.778	0.536	0.474	1e-19
Q4G353	181	50S ribosomal protein L6,	N/A	no	0.852	0.574	0.433	1e-19
B2IK77	177	50S ribosomal protein L6	yes	no	0.778	0.536	0.474	1e-19
A6QCR3	178	50S ribosomal protein L6	yes	no	0.819	0.561	0.446	2e-19
Q2G8W5	177	50S ribosomal protein L6	yes	no	0.836	0.576	0.451	2e-19

>sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 81/101 (80%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFF FL+I+GVGYKA   A+G +LYLKLG+ H++ L V P+VRVFCLK N++CC G+
Sbjct: 1   MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
           D  +V QFAA V+SCKPPE +KGKGI Y +E+I KK GKKK
Sbjct: 61  DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKKK 101

Marchantia polymorpha (taxid: 3197)

>sp|Q1GPB4|RL6_SPHAL 50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplF PE=3 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 17  LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
           +T +   F + L+I GVGY  RA A+G+ L L+LGY HDV+  VP  + +    N  +  
Sbjct: 76  VTGVTEGFTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEI 133

Query: 77  CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
            G+DK +V Q AA +R  + PEP+KGKGI Y  E I +K GKKK
Sbjct: 134 SGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

>sp|Q28UT9|RL6_JANSC 50S ribosomal protein L6 OS=Jannaschia sp. (strain CCS1) GN=rplF PE=3 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 65/104 (62%), Gaps = 2/104 (1%)

Query: 17  LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
           +T +   F + L+I GVGY  RA+ +G +L L LGY HDV+ TVP  V V C KN  V  
Sbjct: 76  VTGVTDGFKKELEITGVGY--RAQMQGNVLKLSLGYSHDVDFTVPEGVTVTCPKNTEVII 133

Query: 77  CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
            G D+  V Q AA++R  + PEP+KGKGI Y  E I +K GKKK
Sbjct: 134 EGNDQQLVGQVAANIREWRAPEPYKGKGIRYKGEYIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Jannaschia sp. (strain CCS1) (taxid: 290400)

>sp|Q38US6|RL6_LACSS 50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplF PE=3 SV=1

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 2/95 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L ++GVGY  RA+ +G+ L L +GY H VE+  P  V V    N  +   G+ K +
Sbjct: 82  FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQK 139

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
           V QFAA +R  +PPEP+KGKGI YTDE +++K GK
Sbjct: 140 VGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGK 174

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Lactobacillus sakei subsp. sakei (strain 23K) (taxid: 314315)

>sp|Q8EUC8|RL6_MYCPE 50S ribosomal protein L6 OS=Mycoplasma penetrans (strain HF-2) GN=rplF PE=3 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 2/109 (1%)

Query: 10  NLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCL 69
           N      L  + +   + LKIVGVGYKA     G  + L LGY H ++L +P  + V C 
Sbjct: 70  NANINNALIGVNSGHTKKLKIVGVGYKA--AVNGNKINLNLGYSHPIDLEIPAGLNVTCP 127

Query: 70  KNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
           +   V   G DK  V QFAA +RS +PPEP+KGKG+ Y++EVI +KVGK
Sbjct: 128 QATEVVITGADKAVVGQFAAVIRSKRPPEPYKGKGVAYSNEVIIRKVGK 176

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Mycoplasma penetrans (strain HF-2) (taxid: 272633)

>sp|Q2N9C6|RL6_ERYLH 50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplF PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 2/97 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L+I GVGY  RA+A+G+ L L+LGY HDV++ VP  + V       V   G+DK  
Sbjct: 83  FSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQA 140

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
           V Q AA +R  + PEP+KGKGI Y  E + +K GKKK
Sbjct: 141 VGQLAAEIRQWRKPEPYKGKGIKYQGEYVFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

>sp|Q4G353|RK6_EMIHU 50S ribosomal protein L6, chloroplastic OS=Emiliania huxleyi GN=rpl6 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 17  LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
           +T + + + + L I GVGY  RA+ +G+ L L +GY H V++  PPA+ V       +  
Sbjct: 78  VTGVSSGWHKKLTIAGVGY--RAQLDGKDLILNMGYSHPVKMVTPPALSVSVESPTSITV 135

Query: 77  CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
            GL+K  V +FAA +RS +PPEP+KGKGI Y  EVI++K GK   K
Sbjct: 136 SGLEKEAVGEFAAKIRSVRPPEPYKGKGIAYEGEVIRRKAGKTGKK 181

Binds 23S rRNA.

Emiliania huxleyi (taxid: 2903)

>sp|B2IK77|RL6_BEII9 50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F R L+I GVGYKA    +G+ L L LGY HD+   +P  + +   K   V   G+DK R
Sbjct: 83  FERKLEITGVGYKA--AVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 140

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
           V Q AA +R+ +PPEP+KGKG+ Y  E I +K GKKK
Sbjct: 141 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|A6QCR3|RL6_SULNB 50S ribosomal protein L6 OS=Sulfurovum sp. (strain NBC37-1) GN=rplF PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           ++  + + L+I GVGY  RA  EG+ L L+LG+ HDV   +P  + +   KN ++   G 
Sbjct: 79  LDKGYSKSLEINGVGY--RAAVEGKTLKLQLGFSHDVNFEIPEGLDIKVDKN-IITVSGT 135

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
           DK  V Q AA +R+ +PPEP+KGKG+ YTDEVI +K GK   K
Sbjct: 136 DKQAVGQAAAEIRAYRPPEPYKGKGVKYTDEVIIRKAGKAAGK 178

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Sulfurovum sp. (strain NBC37-1) (taxid: 387093)

>sp|Q2G8W5|RL6_NOVAD 50S ribosomal protein L6 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplF PE=3 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 17  LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
           +T +   + + L+I GVGY  RA A+G+ L L+LGY HDV+  VP  + +    N  V  
Sbjct: 76  VTGVTQGYTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFPVPEGIEIKTPDNTTVEI 133

Query: 77  CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
            G+DK +V Q AA +R  + PEP+KGKGI Y  E I +K GKKK
Sbjct: 134 SGIDKQKVGQVAAEIRRWRKPEPYKGKGIKYRGEFIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
449451529	102	PREDICTED: 60S ribosomal protein L6, mit	0.819	0.980	0.87	7e-44
255573081	102	50S ribosomal protein L6, putative [Rici	0.762	0.911	0.892	7e-42
224094789	102	predicted protein [Populus trichocarpa]	0.762	0.911	0.892	3e-41
18398731	102	large subunit ribosomal protein L6 [Arab	0.762	0.911	0.860	5e-41
358248188	102	uncharacterized protein LOC100811303 [Gl	0.762	0.911	0.849	2e-40
351727437	102	uncharacterized protein LOC100527168 [Gl	0.762	0.911	0.849	2e-40
297836574	102	ribosomal protein L6 family protein [Ara	0.762	0.911	0.849	2e-40
388516447	102	unknown [Medicago truncatula]	0.762	0.911	0.838	3e-40
356535503	102	PREDICTED: 60S ribosomal protein L6, mit	0.762	0.911	0.849	3e-40
255630123	102	unknown [Glycine max]	0.762	0.911	0.838	4e-40

>gi|449451529|ref|XP_004143514.1| PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Cucumis sativus] gi|449496483|ref|XP_004160146.1| PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Cucumis sativus]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 92/100 (92%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAEA GRLLYLKLGY H+VELTVPPAVRVFC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKK 119
           DK RVHQFAA+VRSCKPPE +KGKGIMY DEVIK+K GKK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573081|ref|XP_002527470.1| 50S ribosomal protein L6, putative [Ricinus communis] gi|223533110|gb|EEF34868.1| 50S ribosomal protein L6, putative [Ricinus communis]

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/93 (89%), Positives = 87/93 (93%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAE+EGRLLYLKLGY H+VELTVPPAVRVFC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAASVRSCKPPE +KGKGIMY DEVI
Sbjct: 61  DKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094789|ref|XP_002310235.1| predicted protein [Populus trichocarpa] gi|118485475|gb|ABK94593.1| unknown [Populus trichocarpa] gi|118486815|gb|ABK95242.1| unknown [Populus trichocarpa] gi|222853138|gb|EEE90685.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/93 (89%), Positives = 87/93 (93%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAEAEGRLL+LKLGY H+VELTVPPAVRVFC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAASVRSCKPPE +KGKGIMY DEVI
Sbjct: 61  DKGRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398731|ref|NP_565438.1| large subunit ribosomal protein L6 [Arabidopsis thaliana] gi|14994247|gb|AAK73258.1| putative ribosomal protein L6 [Arabidopsis thaliana] gi|20197811|gb|AAD15497.2| putative ribosomal protein L6 [Arabidopsis thaliana] gi|21594402|gb|AAM66004.1| putative ribosomal protein L6 [Arabidopsis thaliana] gi|330251671|gb|AEC06765.1| large subunit ribosomal protein L6 [Arabidopsis thaliana]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 85/93 (91%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAE  GR LYLKLGY H+VEL VPPAVRVFC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+VRSCKPPEP+KGKGIMYTDEV+
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248188|ref|NP_001239835.1| uncharacterized protein LOC100811303 [Glycine max] gi|255634114|gb|ACU17420.1| unknown [Glycine max]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 85/93 (91%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAEA GRLLYLKLGY HDVEL VPPAVRVFC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+VR+CKPPE +KGKG+MY DEVI
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727437|ref|NP_001235881.1| uncharacterized protein LOC100527168 [Glycine max] gi|255631702|gb|ACU16218.1| unknown [Glycine max]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 85/93 (91%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAEA GRLLYLKLGY H+VELTVPPAVRVFC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+ R+CKPPE +KGKGIMY DEVI
Sbjct: 61  DKQRVHQFAATARTCKPPEVYKGKGIMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836574|ref|XP_002886169.1| ribosomal protein L6 family protein [Arabidopsis lyrata subsp. lyrata] gi|297332009|gb|EFH62428.1| ribosomal protein L6 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 84/93 (90%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAE  GR LYLKLGY H+VEL VPPAVRVFC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+VRSCKPPEP+KGKGIMY DEV+
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYIDEVV 93

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516447|gb|AFK46285.1| unknown [Medicago truncatula]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 86/93 (92%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAE+ GRLLYLKLGY H+VEL+ PPAVRVFC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAESAGRLLYLKLGYSHEVELSAPPAVRVFCFKNNVICCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+VR+CKPPE +KGKGIMYTDEVI
Sbjct: 61  DKQRVHQFAATVRNCKPPEVYKGKGIMYTDEVI 93

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535503|ref|XP_003536284.1| PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Glycine max]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 85/93 (91%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFLKIVGVGYKARAEA GRLLYLKLGY H+VEL VPPAVRVFC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+VR+CKPPE +KGKGIMY DEVI
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630123|gb|ACU15415.1| unknown [Glycine max]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 85/93 (91%)

Query: 20  MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
           MEAKFFRFL+IVGVGYKARAEA GRLLYLKLGY HDVEL VPPAVRVFC KNNV+CC G+
Sbjct: 1   MEAKFFRFLRIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGI 60

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           DK RVHQFAA+VR+CKPPE +KGKG+MY DEVI
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2062200	102	AT2G18400 [Arabidopsis thalian	0.762	0.911	0.860	3.6e-41
TAIR|locus:2207190	223	emb2394 "embryo defective 2394	0.713	0.390	0.438	1.8e-16
TIGR_CMR|CHY_2294	182	CHY_2294 "ribosomal protein L6	0.680	0.456	0.482	3.7e-16
TIGR_CMR|SPO_0500	177	SPO_0500 "ribosomal protein L6	0.713	0.491	0.471	2e-15
TIGR_CMR|BA_0125	179	BA_0125 "ribosomal protein L6"	0.713	0.486	0.449	8.8e-15
TIGR_CMR|GSU_2842	179	GSU_2842 "ribosomal protein L6	0.713	0.486	0.483	1.8e-14
TIGR_CMR|CBU_0253	178	CBU_0253 "ribosomal protein L6	0.696	0.477	0.459	2.3e-14
TIGR_CMR|CJE_1860	178	CJE_1860 "ribosomal protein L6	0.704	0.483	0.426	4.9e-14
UNIPROTKB|P0AG55	177	rplF "50S ribosomal subunit pr	0.713	0.491	0.393	2.1e-13
UNIPROTKB|P46898	179	rplF "50S ribosomal protein L6	0.713	0.486	0.426	3.4e-13

TAIR|locus:2062200 AT2G18400 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 80/93 (86%), Positives = 85/93 (91%)

Query:    20 MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
             MEAKFFRFLKIVGVGYKARAE  GR LYLKLGY H+VEL VPPAVRVFC KNNVVCC G+
Sbjct:     1 MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query:    80 DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             DK RVHQFAA+VRSCKPPEP+KGKGIMYTDEV+
Sbjct:    61 DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2207190 emb2394 "embryo defective 2394" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 39/89 (43%), Positives = 60/89 (67%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F + L +VGVGY  RA  +G+ L L LG+ H V++ +P +++V   +N  +   G DK  
Sbjct:   126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             + QFAA+VR  +PPEP+KGKG+ Y+DE++
Sbjct:   184 IGQFAATVRKWRPPEPYKGKGVKYSDEIV 212

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TIGR_CMR|CHY_2294 CHY_2294 "ribosomal protein L6" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 41/85 (48%), Positives = 55/85 (64%)

Query:    28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
             L++VGVGY  RA  +GR L L +GY H VE+  P  + +     N +   G+DK  V  F
Sbjct:    87 LELVGVGY--RAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKELVGNF 144

Query:    88 AASVRSCKPPEPFKGKGIMYTDEVI 112
             AA++R+ + PEP+KGKGI YTDEVI
Sbjct:   145 AATIRAVREPEPYKGKGIKYTDEVI 169

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SPO_0500 SPO_0500 "ribosomal protein L6" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 54/89 (60%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F + L+I GVGY  RA A+G  L L LGY HDV+ TVP  V V   K   +   G+D+ +
Sbjct:    83 FKKELEITGVGY--RANAQGNTLKLNLGYSHDVDFTVPAGVTVSTPKQTEIVVEGIDQQQ 140

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             V + AA +R  + PEP+KGKGI Y  E I
Sbjct:   141 VGEVAAKIREWRSPEPYKGKGIRYKGEFI 169

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|BA_0125 BA_0125 "ribosomal protein L6" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/89 (44%), Positives = 56/89 (62%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F R L++VGVGY  RA+ +G  L L +GY H VE+T    + V       +   G+DK R
Sbjct:    84 FARGLELVGVGY--RAQKQGDKLVLSVGYSHPVEMTPEAGLEVEVPAPTKIVIKGIDKQR 141

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             V +FAA++R+ + PEP+KGKGI Y  EV+
Sbjct:   142 VGEFAANIRAVRAPEPYKGKGIRYEGEVV 170

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_2842 GSU_2842 "ribosomal protein L6" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 43/89 (48%), Positives = 54/89 (60%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F R L+I GVGY  RAEA+G +L L LGY H +   +P  + V   K   +   G+DK  
Sbjct:    83 FERALEINGVGY--RAEAKGDVLNLSLGYSHPINYALPAGIIVEVDKMTKLVVKGIDKEL 140

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             V Q AA +RS + PEP+KGKGI Y DE I
Sbjct:   141 VGQTAAKIRSFRGPEPYKGKGIKYADEKI 169

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CBU_0253 CBU_0253 "ribosomal protein L6" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 40/87 (45%), Positives = 53/87 (60%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F R L +VGVGY  RA+AEG+ L L +G  H V + +P  + V       +   G DK R
Sbjct:    84 FQRKLVMVGVGY--RAKAEGKKLNLTVGLSHPVNIEMPEGITVETPSQTEIIVKGADKQR 141

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDE 110
             V Q AA++R  +PPEP+KGKGI Y +E
Sbjct:   142 VSQVAANIREIRPPEPYKGKGIRYDNE 168

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CJE_1860 CJE_1860 "ribosomal protein L6" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/89 (42%), Positives = 54/89 (60%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F + L+I GVGYKA  +  G++L L LG+ H +   +P  + +   KN +    G DK  
Sbjct:    83 FSKTLEINGVGYKAALK--GKVLELSLGFSHPINYDIPEGIEIVVDKNTIAVK-GSDKQV 139

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             V Q AA +R  +PPEP+KGKG+ Y+DE I
Sbjct:   140 VGQVAAQIREFRPPEPYKGKGVKYSDERI 168

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0AG55 rplF "50S ribosomal subunit protein L6" [Escherichia coli K-12 (taxid:83333)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 35/89 (39%), Positives = 53/89 (59%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct:    83 FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 140

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             + Q AA +R+ + PEP+KGKG+ Y DEV+
Sbjct:   141 IGQVAADLRAYRRPEPYKGKGVRYADEVV 169

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|P46898 rplF "50S ribosomal protein L6" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 38/89 (42%), Positives = 50/89 (56%)

Query:    24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
             F R L++VGVGY  RA   G  L L +GY H VE+     + +       V   G DK R
Sbjct:    84 FERGLELVGVGY--RASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKER 141

Query:    84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
             V   AA++R+ + PEP+KGKGI Y  EV+
Sbjct:   142 VGAIAANIRAVRSPEPYKGKGIRYEGEVV 170

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P26861	RM06_MARPO	No assigned EC number	0.6435	0.8278	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0019019801	SubName- Full=Putative uncharacterized protein; (103 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.16155.2.1	Predicted protein (206 aa)	•			•			•		0.957
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)	•			•			•		0.953
	gw1.II.2942.1	SubName- Full=Putative uncharacterized protein; (218 aa)	•			•	•		•		0.944
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•			•		0.931
	rpl22	50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)	•			•	•		•		0.923
	eugene3.15590001	hypothetical protein (142 aa)	•		•	•	•		•		0.922
	fgenesh4_pm.C_LG_XIII000297	hypothetical protein (222 aa)	•			•	•		•		0.918
	gw1.8701.6.1	Predicted protein (100 aa)	•			•			•		0.907
	grail3.0553000101	SubName- Full=Putative uncharacterized protein; (104 aa)	•			•			•		0.896
	estExt_fgenesh4_pm.C_LG_IV0116	hypothetical protein (160 aa)	•			•	•		•		0.887

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
TIGR03654	175	TIGR03654, L6_bact, ribosomal protein L6, bacteria	2e-34
PRK05498	178	PRK05498, rplF, 50S ribosomal protein L6; Validate	2e-33
CHL00140	178	CHL00140, rpl6, ribosomal protein L6; Validated	5e-28
COG0097	178	COG0097, RplF, Ribosomal protein L6P/L9E [Translat	6e-25
pfam00347	76	pfam00347, Ribosomal_L6, Ribosomal protein L6	2e-17

>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type

 Score =  116 bits (293), Expect = 2e-34
 Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L+IVGVGY  RA+ +G+ L L LGY H VE  +P  + V   K   +   G+DK  
Sbjct: 82  FEKKLEIVGVGY--RAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQL 139

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKK 119
           V Q AA +R+ + PEP+KGKGI Y  EV+++K GKK
Sbjct: 140 VGQVAAEIRAFRKPEPYKGKGIRYAGEVVRRKEGKK 175

[Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 175

>gnl|CDD|235495 PRK05498, rplF, 50S ribosomal protein L6; Validated

 Score =  114 bits (288), Expect = 2e-33
 Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L+IVGVGY  RA+ +G+ L L LGY H VE  +P  + V   K   +   G+DK  
Sbjct: 83  FEKKLEIVGVGY--RAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQL 140

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKS 121
           V Q AA +RS +PPEP+KGKGI Y  EV+++K GKKK 
Sbjct: 141 VGQVAAEIRSYRPPEPYKGKGIRYAGEVVRRKEGKKKK 178

Length = 178

>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated

 Score =  100 bits (251), Expect = 5e-28
 Identities = 46/96 (47%), Positives = 63/96 (65%), Gaps = 2/96 (2%)

Query: 23  KFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKH 82
            F + L++ GVGY  RA+ +G+ L L LGY H V++ +PP + V    N  +   G+DK 
Sbjct: 82  GFEKKLELQGVGY--RAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKE 139

Query: 83  RVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
            V QFAA +RS +PPEP+KGKGI Y  EVI++K GK
Sbjct: 140 LVGQFAAKIRSVRPPEPYKGKGIRYKGEVIRRKAGK 175

Length = 178

>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

 Score = 92.6 bits (231), Expect = 6e-25
 Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 28  LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
           L+IVGVGY  RA+  G  L L LGY H V + +P  + V       +   G+DK  V Q 
Sbjct: 87  LEIVGVGY--RAQVVGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKELVGQV 144

Query: 88  AASVRSCKPPEPFKGKGIMYTDEVIKKKVGKK 119
           AA++R+ + PEP+KGKGI Y  E I++K GK 
Sbjct: 145 AANIRAARKPEPYKGKGIRYDGEYIRRKEGKT 176

Length = 178

>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6

 Score = 70.7 bits (174), Expect = 2e-17
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 31  VGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAAS 90
           + VG   R   +G  L L LG   ++   +PP V V   K  V+   G+DK +V QFAA 
Sbjct: 1   IPVGV--RVSIDGVNLVLVLGPKGELTREIPPGVTVKVEKITVIIVSGIDKEKVGQFAAL 58

Query: 91  VRSCKPPEPFKGKGIMY 107
           + + + P P  GKG+ Y
Sbjct: 59  IGTYRAPIPNMGKGVSY 75

Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
CHL00140	178	rpl6 ribosomal protein L6; Validated	100.0
TIGR03654	175	L6_bact ribosomal protein L6, bacterial type.	100.0
PRK05498	178	rplF 50S ribosomal protein L6; Validated	100.0
COG0097	178	RplF Ribosomal protein L6P/L9E [Translation, ribos	100.0
KOG3254	211	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PTZ00027	190	60S ribosomal protein L6; Provisional	99.97
PRK05518	180	rpl6p 50S ribosomal protein L6P; Reviewed	99.97
TIGR03653	170	arch_L6P archaeal ribosomal protein L6P. Members o	99.97
PTZ00179	189	60S ribosomal protein L9; Provisional	99.97
PF00347	77	Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0	98.62
KOG3255	179	consensus 60S ribosomal protein L9 [Translation, r	96.62

>CHL00140 rpl6 ribosomal protein L6; Validated

Probab=100.00  E-value=2.1e-47  Score=291.55  Aligned_cols=108  Identities=42%  Similarity=0.727  Sum_probs=105.0

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+++|+||||.+  +|+.|.|+||||||+.++||+||+|+|+++|+|+|+|+|||+|+||||+|
T Consensus        71 lI~Nmi~GVt~Gf~~~L~lvGvGyr~~~--~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dke~Vgq~AA~I  148 (178)
T CHL00140         71 LINNMVIGVSEGFEKKLELQGVGYRAQV--QGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKELVGQFAAKI  148 (178)
T ss_pred             HHHHHHhhcccCceEEEEEEEEEEEEEE--eCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHH
Confidence            6899999999999999999999999998  77889999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKS  121 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~  121 (122)
                      |++|+|||||||||+|+||+|++|+||+++
T Consensus       149 r~~r~pepYKGKGI~y~~e~i~~K~gK~~~  178 (178)
T CHL00140        149 RSVRPPEPYKGKGIRYKGEVIRRKAGKAGK  178 (178)
T ss_pred             hccCCCCCcCCccEeECCEEEEEecccCCC
Confidence            999999999999999999999999999854

>TIGR03654 L6_bact ribosomal protein L6, bacterial type

Probab=100.00  E-value=3.1e-46  Score=284.26  Aligned_cols=107  Identities=41%  Similarity=0.677  Sum_probs=104.1

Q ss_pred             eehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHH
Q 033325           11 LCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAAS   90 (122)
Q Consensus        11 ~~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~   90 (122)
                      -+++||+.||++||.++|+++|+||||.+  +++.|.|+||||||+.++||++|+|+++++|+|+|+|+|||.|+||||+
T Consensus        69 s~i~Nmi~GVt~Gf~~~L~lvGvgyrv~~--~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dke~Vgq~AA~  146 (175)
T TIGR03654        69 ALINNMVIGVSEGFEKKLEIVGVGYRAQL--QGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAE  146 (175)
T ss_pred             HHHHHHhheeccCcEEEEEEEEEEEEEEE--eCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence            36899999999999999999999999998  7889999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCCceeecCeEEEecCCcc
Q 033325           91 VRSCKPPEPFKGKGIMYTDEVIKKKVGKK  119 (122)
Q Consensus        91 Ir~~r~pepYKGKGI~~~~E~I~~K~gKk  119 (122)
                      ||++|+|||||||||+|.||.|++|+|||
T Consensus       147 Ir~~r~pepYKgkGi~~~~e~I~~K~gKk  175 (175)
T TIGR03654       147 IRAFRKPEPYKGKGIRYAGEVVRRKEGKK  175 (175)
T ss_pred             HhccCCCCCcCCCcEeECCEEEEEeCcCC
Confidence            99999999999999999999999999996

>PRK05498 rplF 50S ribosomal protein L6; Validated

Probab=100.00  E-value=4.1e-46  Score=284.08  Aligned_cols=109  Identities=43%  Similarity=0.707  Sum_probs=105.6

Q ss_pred             eehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHH
Q 033325           11 LCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAAS   90 (122)
Q Consensus        11 ~~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~   90 (122)
                      -+++||+.||++||.++|+++|+||||.+  +++.|.|+||||||+.++||+||+|+++++|+|+|+|+|||+|+||||+
T Consensus        70 s~I~Nmi~GVt~Gf~~~L~lvGvgyrv~~--~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dke~Vg~~AA~  147 (178)
T PRK05498         70 ALINNMVVGVTEGFEKKLEIVGVGYRAQV--KGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAE  147 (178)
T ss_pred             HHHHHHhhhcCCCeEEEEEEEeEEEEEEE--eCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence            36899999999999999999999999998  7889999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325           91 VRSCKPPEPFKGKGIMYTDEVIKKKVGKKKS  121 (122)
Q Consensus        91 Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  121 (122)
                      ||++|+|||||||||+|.||+|++|+||+++
T Consensus       148 Ir~~r~pe~YkgkGi~~~~e~i~~K~gKk~~  178 (178)
T PRK05498        148 IRSYRPPEPYKGKGIRYAGEVVRRKEGKKKK  178 (178)
T ss_pred             HhccCCCCCccCCcEeECCEEEEEecccCCC
Confidence            9999999999999999999999999999874

>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-45  Score=282.46  Aligned_cols=109  Identities=38%  Similarity=0.586  Sum_probs=105.3

Q ss_pred             eehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHH
Q 033325           11 LCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAAS   90 (122)
Q Consensus        11 ~~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~   90 (122)
                      -+++||+.|||+||+++|+|+|+||||++  +|+.|.++||||||+.++||+||+|++++||+|+|+|+|||.||||||+
T Consensus        70 ali~Nmv~GVteGf~~kL~ivgvgyra~v--~g~~l~l~LG~shp~~~~ip~gi~v~v~~~t~I~v~GidKe~VGQ~AA~  147 (178)
T COG0097          70 ALINNMVKGVTEGFEKKLEIVGVGYRAQV--VGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKELVGQVAAN  147 (178)
T ss_pred             HHHHHHheecccceEEEEEEEEecceeEE--eccEEEEeecccCCeEEECCCCeEEEecCCCEEEEEcCCHHHHhHHHHH
Confidence            47899999999999999999999999998  7778999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325           91 VRSCKPPEPFKGKGIMYTDEVIKKKVGKKKS  121 (122)
Q Consensus        91 Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  121 (122)
                      ||++|+|||||||||||+||+|++|+||+.+
T Consensus       148 Ir~~r~pepykgKgi~ydge~I~~K~gK~~k  178 (178)
T COG0097         148 IRAARKPEPYKGKGIRYDGEYIRRKEGKTGK  178 (178)
T ss_pred             HHhccCCCCCCCcceEEcCEEEEEeccccCC
Confidence            9999999999999999999999999999653

>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-43  Score=269.48  Aligned_cols=108  Identities=46%  Similarity=0.729  Sum_probs=105.1

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      ++.||+.|||+||.+.|+|||+||||++  +|..|.|+|||||++.+.||++|.|+++.||.++++|+|||+|+||||.+
T Consensus       104 l~~N~v~GVt~g~~k~l~lVGvGYRa~l--egk~l~lklG~S~~v~l~iP~~v~Vk~p~ptsl~~~G~dKq~V~qFAAkv  181 (211)
T KOG3254|consen  104 LLANNVKGVTMGFLKILKLVGVGYRASL--EGKFLHLKLGYSHDVLLSIPTDVQVKNPTPTSLVLRGIDKQKVTQFAAKV  181 (211)
T ss_pred             HHhccchhhhhhhhheeeEEeeeeEEEe--cCceEEEEeccccceeecCCCceEEecCCCCEEEEecccHHHHHHHHHHH
Confidence            6789999999999999999999999998  69999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKS  121 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~  121 (122)
                      |+||||||||||||.|+||.+++|+||..|
T Consensus       182 RsfkpPEPYKGKGIyv~dE~vklK~kK~~k  211 (211)
T KOG3254|consen  182 RSFKPPEPYKGKGIYVDDEKVKLKAKKSIK  211 (211)
T ss_pred             hccCCCCCcCCCceEeccceeeecccccCC
Confidence            999999999999999999999999999754

>PTZ00027 60S ribosomal protein L6; Provisional

Probab=99.97  E-value=5.1e-31  Score=203.53  Aligned_cols=104  Identities=17%  Similarity=0.155  Sum_probs=94.3

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEe--ccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEEEecCHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAE--AEGRLLYL--KLGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHRVH   85 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~--~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~Vg   85 (122)
                      +++||+.||++||.++|+++|+||||+++  .+|+.|.|  +||||||+.++||+||+|+++++  |+|+|+|+|||+||
T Consensus        75 lI~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vg  154 (190)
T PTZ00027         75 HIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVS  154 (190)
T ss_pred             HHHHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHH
Confidence            68999999999999999999999999953  48899999  89999999999999999999986  89999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCceeecCeEEEecC
Q 033325           86 QFAASVRSCKPPEPFKGKGIMYTDEVIKKKV  116 (122)
Q Consensus        86 qfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~  116 (122)
                      ||||+||+..+-.. |...+|.||.+|.-|+
T Consensus       155 q~AA~I~~~~~~~~-~d~r~f~dgiy~~~k~  184 (190)
T PTZ00027        155 RSAALIHQSTLVRN-KDIRKFLDGIYVSEKG  184 (190)
T ss_pred             HHHHHHHHHhcccC-CCccEeecCEEEEEee
Confidence            99999999866532 3336899999999887

>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed

Probab=99.97  E-value=5.3e-31  Score=202.03  Aligned_cols=103  Identities=21%  Similarity=0.173  Sum_probs=93.6

Q ss_pred             ehhhHhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF   87 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGY--r~~~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~Vgqf   87 (122)
                      +++||+.||++||.++|+++|+||  ||++  +|+.|.|  +||||||+.++||+||++++++ |+|+|+|+|||+||||
T Consensus        73 lI~NmI~GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~-t~I~i~GiDKq~Vgq~  149 (180)
T PRK05518         73 HIKNMIKGVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVKG-EDVIVEGIDKEDVGQT  149 (180)
T ss_pred             HHHhhheecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEecC-CEEEEEeCCHHHHHHH
Confidence            689999999999999999999999  6655  8889999  9999999999999999999999 9999999999999999


Q ss_pred             HHHhhccCCCCCCCCCceeecCeEEEecCCc
Q 033325           88 AASVRSCKPPEPFKGKGIMYTDEVIKKKVGK  118 (122)
Q Consensus        88 Aa~Ir~~r~pepYKGKGI~~~~E~I~~K~gK  118 (122)
                      ||+||+..+-.. |....|.||.++..|+-|
T Consensus       150 AA~Ir~~~~~~~-kd~r~f~dgiyv~~k~~~  179 (180)
T PRK05518        150 AANIEQATKIKG-FDRRVFQDGIYIVEKEVK  179 (180)
T ss_pred             HHHHHHhhcccC-CCCCEeecCEEEEEeccC
Confidence            999999877633 444689999999988744

>TIGR03653 arch_L6P archaeal ribosomal protein L6P

Probab=99.97  E-value=2.6e-30  Score=196.59  Aligned_cols=100  Identities=21%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             ehhhHhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF   87 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGY--r~~~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~Vgqf   87 (122)
                      +++||+.||++||.++|+++|+||  ||++  +|+.|.|  +||||||+.++||+||+|+++++ +|+|+|+|||.||||
T Consensus        67 li~NmI~GVt~Gf~~~LeivGvGy~~ra~~--~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~-~I~i~G~DKq~Vgq~  143 (170)
T TIGR03653        67 HIKNMIKGVTEGFEYKMKVVYSHFPMQVKV--EGNKVVIENFLGEKAPRRAKIPGGVKVKVKGE-EVIVTGIDKEDVGQT  143 (170)
T ss_pred             HHHhheeecccCeEEEEEEEeccccEEEEE--cCCeEEEeeccccceeEEEECCCCeEEEecCC-EEEEEeCCHHHHHHH
Confidence            689999999999999999999999  6665  8888999  89999999999999999999995 999999999999999


Q ss_pred             HHHhhccCCCCCCCCCceeecCeEEEec
Q 033325           88 AASVRSCKPPEPFKGKGIMYTDEVIKKK  115 (122)
Q Consensus        88 Aa~Ir~~r~pepYKGKGI~~~~E~I~~K  115 (122)
                      ||.||+.++..- |.-..|.||.++..|
T Consensus       144 AA~Ir~~~~~~~-~d~r~f~dgiy~~~~  170 (170)
T TIGR03653       144 AANIEQATRIKG-RDPRVFQDGIYIVEK  170 (170)
T ss_pred             HHHHHHhhcccC-CCccEeecCEEEEeC
Confidence            999999877622 222356678777543

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.

>PTZ00179 60S ribosomal protein L9; Provisional

Probab=99.97  E-value=7.1e-30  Score=197.00  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=92.2

Q ss_pred             ehhhHhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCC----eEEEEEecCHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKN----NVVCCCGLDKHR   83 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGY--r~~~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~----t~I~l~GidK~~   83 (122)
                      +++||+.||++||.++|+++|+||  ||.+  +|+.|.|  +||||||+.++||+||+|++++|    |+|+|+|+|||.
T Consensus        74 lI~NMI~GVt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~  151 (189)
T PTZ00179         74 HVRNMITGVTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQ  151 (189)
T ss_pred             HHHHHhhhhcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHH
Confidence            689999999999999999999999  7776  8999999  89999999999999999999998    899999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCceeecCeEEEecC
Q 033325           84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKV  116 (122)
Q Consensus        84 VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~  116 (122)
                      ||||||+|++..+--- |...+|.||.|+..|.
T Consensus       152 Vgq~AA~i~~~~~~~~-~d~r~f~dgiy~~~k~  183 (189)
T PTZ00179        152 VSREAAVMHQLCLVKK-KDIRKFLDGIYVQTKT  183 (189)
T ss_pred             HHHHHHHHHHhhcccC-CCccEeecCEEEEEee
Confidence            9999999999755411 2225899999999886

>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.62  E-value=4e-09  Score=69.11  Aligned_cols=70  Identities=24%  Similarity=0.275  Sum_probs=60.7

Q ss_pred             EEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEec----CCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCCcee
Q 033325           32 GVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCL----KNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIM  106 (122)
Q Consensus        32 GvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~----~~t~I~l~GidK~~VgqfAa~Ir~~r~pepYKGKGI~  106 (122)
                      +.|+++.+  ++ .+....|++|...+++|++|++++.    +.+....++.|++..  |||.++.+|.+.+|+++|+.
T Consensus         2 P~gV~v~~--~~-~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~   75 (77)
T PF00347_consen    2 PEGVKVTI--KG-NIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVT   75 (77)
T ss_dssp             STTCEEEE--ET-TEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEE--eC-cEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEEC
Confidence            45788887  44 6888999999999999999999976    456777888889888  99999999999999999975

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....

>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.00018  Score=55.69  Aligned_cols=86  Identities=16%  Similarity=0.083  Sum_probs=71.4

Q ss_pred             cccccceehhhHhhccccceEEEEEEEEEEeeEEEeccCC---EEEE-EeccceeeeeeCCCCcEEEec--CCeEEEEEe
Q 033325            5 CLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGR---LLYL-KLGYVHDVELTVPPAVRVFCL--KNNVVCCCG   78 (122)
Q Consensus         5 ~~~~~~~~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~---~L~l-~LGySH~i~~~IP~~v~v~~~--~~t~I~l~G   78 (122)
                      ||-+---.++||++||+.||.+++..+.-+|.+..+.+.+   .... +||.+.+...+..+|+.....  -+.++.++|
T Consensus        69 ~l~t~~s~ien~i~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~  148 (179)
T KOG3255|consen   69 CLRTVVSHIENCIKGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEG  148 (179)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecc
Confidence            4444445689999999999999999999999988876655   3333 999999999999999976553  356899999


Q ss_pred             cCHHHHHHHHHH
Q 033325           79 LDKHRVHQFAAS   90 (122)
Q Consensus        79 idK~~VgqfAa~   90 (122)
                      .|-+.|.|-||.
T Consensus       149 ~~~~~vs~~~a~  160 (179)
T KOG3255|consen  149 NDLELVSQSAAL  160 (179)
T ss_pred             cchhhhhhHhHh
Confidence            999999998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
3bbo_I	223	Homology Model For The Spinach Chloroplast 50s Subu		8e-19
1rl6_A	177	Ribosomal Protein L6 Length = 177		5e-15
1eg0_J	171	Fitting Of Components With Known Structure Into An		6e-15
487d_J	164	Seven Ribosomal Proteins Fitted To A Cryo-Electron		6e-15
1vs6_G	177	Crystal Structure Of The Bacterial Ribosome From Es		2e-14
1p85_E	176	Real Space Refined Coordinates Of The 50s Subunit F		2e-14
2gya_E	167	Structure Of The 50s Subunit Of A Pre-Translocation		2e-14
1nwx_E	185	Complex Of The Large Ribosomal Subunit From Deinoco		3e-08
1pnu_E	177	Crystal Structure Of A Streptomycin Dependent Ribos		3e-08
1nkw_E	212	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-08
3pyo_G	159	Crystal Structure Of A Complex Containing Domain 3		5e-08
3fin_H	160	T. Thermophilus 70s Ribosome In Complex With Mrna,		5e-08
3tve_H	170	Crystal Structure Analysis Of Ribosomal Decoding. T		5e-08
2j01_H	180	Structure Of The Thermus Thermophilus 70s Ribosome		5e-08

>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 223

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L +VGVGY  RA  +G+ L L LG+ H V++ +P +++V   +N  +   G DK  
Sbjct: 126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           + QFAA+VR  +PPEP+KGKG+ Y+DE++
Sbjct: 184 IGQFAATVRKWRPPEPYKGKGVKYSDEIV 212

>pdb|1RL6|A Chain A, Ribosomal Protein L6 Length = 177

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + +       +   G DK R
Sbjct: 82  YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 139
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           V + AA++R+ +PPEP+KGKGI Y  E++
Sbjct: 140 VGELAANIRAVRPPEPYKGKGIRYEGELV 168

>pdb|487D|J Chain J, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 164

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + +       +   G DK R
Sbjct: 76  YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 133
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           V + AA++R+ +PPEP+KGKGI Y  E++
Sbjct: 134 VGELAANIRAVRPPEPYKGKGIRYEGELV 162

>pdb|1VS6|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 177

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct: 83  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 140
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           + Q AA +R+ + PEP+KGKG+ Y DEV+
Sbjct: 141 IGQVAADLRAYRRPEPYKGKGVRYADEVV 169

>pdb|1P85|E Chain E, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 176

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct: 82  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 139
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           + Q AA +R+ + PEP+KGKG+ Y DEV+
Sbjct: 140 IGQVAADLRAYRRPEPYKGKGVRYADEVV 168

>pdb|2GYA|E Chain E, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 167

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct: 78  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 135
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           + Q AA +R+ + PEP+KGKG+ Y DEV+
Sbjct: 136 IGQVAADLRAYRRPEPYKGKGVRYADEVV 164

>pdb|1NWX|E Chain E, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 185

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 28  LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
           L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  V Q 
Sbjct: 87  LELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQV 144
Query: 88  AASVRSCKPPEPFKGKGIMYTDEVI 112
           AA+VR  + P+ + GKG+ +  E I
Sbjct: 145 AANVRKVRKPDAYHGKGVRFVGEQI 169

>pdb|1PNU|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 177

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 28  LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
           L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  V Q 
Sbjct: 83  LELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQV 140
Query: 88  AASVRSCKPPEPFKGKGIMYTDEVI 112
           AA+VR  + P+ + GKG+ +  E I
Sbjct: 141 AANVRKVRKPDAYHGKGVRFVGEQI 165

>pdb|1NKW|E Chain E, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 212

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 28  LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
           L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  V Q 
Sbjct: 114 LELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQV 171
Query: 88  AASVRSCKPPEPFKGKGIMYTDEVI 112
           AA+VR  + P+ + GKG+ +  E I
Sbjct: 172 AANVRKVRKPDAYHGKGVRFVGEQI 196

>pdb|3PYO|G Chain G, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 159

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 72  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 129
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           V Q AA++R+ + P  +  KGI Y  E +
Sbjct: 130 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 158

>pdb|3FIN|H Chain H, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 160

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 72  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 129
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           V Q AA++R+ + P  +  KGI Y  E +
Sbjct: 130 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 158

>pdb|3TVE|H Chain H, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 170

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 82  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 139
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           V Q AA++R+ + P  +  KGI Y  E +
Sbjct: 140 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 168

>pdb|2J01|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 180

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 83  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 140
Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
           V Q AA++R+ + P  +  KGI Y  E +
Sbjct: 141 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 169
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3r8s_G	176	50S ribosomal protein L6; protein biosynthesis, RN	2e-33
2zjr_E	185	50S ribosomal protein L6; ribosome, large ribosoma	1e-32
3v2d_H	180	50S ribosomal protein L6; ribosome associated inhi	2e-32
1nkw_E	212	50S ribosomal protein L6; ribosome, large subunit,	2e-32
3bbo_I	223	Ribosomal protein L6; large ribosomal subunit, spi	4e-32
1rl6_A	177	Protein (ribosomal protein L6); RNA-binding protei	9e-32
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	1e-17
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	2e-11
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	6e-08
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	3e-07
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	6e-06

>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Length = 176

 Score =  113 bits (285), Expect = 2e-33
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct: 82  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 139

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
           + Q AA +R+ + PEP+KGKG+ Y DEV++ K  KKK
Sbjct: 140 IGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 176

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Length = 185

 Score =  111 bits (281), Expect = 1e-32
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           +   L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  
Sbjct: 83  YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 140

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK--KKSK 122
           V Q AA+VR  + P+ + GKG+ +  E I  K GK      
Sbjct: 141 VGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGATGG 181

>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Length = 180

 Score =  111 bits (280), Expect = 2e-32
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY  RA   GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 83  YSKELLIKGIGY--RARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 140

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
           V Q AA++R+ + P  +  KGI Y  E ++ K GK  +K
Sbjct: 141 VGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAK 179

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212

 Score =  112 bits (282), Expect = 2e-32
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           +   L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  
Sbjct: 110 YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 167

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK--KKSK 122
           V Q AA+VR  + P+ + GKG+ +  E I  K GK      
Sbjct: 168 VGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGATGG 208

>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 223

 Score =  111 bits (280), Expect = 4e-32
 Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 2/99 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L +VGVGY  RA  +G+ L L LG+ H V++ +P +++V   +N  +   G DK  
Sbjct: 126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
           + QFAA+VR  +PPEP+KGKG+ Y+DE++++K GK   K
Sbjct: 184 IGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKK 222

>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Length = 177

 Score =  109 bits (275), Expect = 9e-32
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 2/95 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + +       +   G DK R
Sbjct: 82  YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 139

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
           V + AA++R+ +PPEP+KGKGI Y  E+++ K GK
Sbjct: 140 VGELAANIRAVRPPEPYKGKGIRYEGELVRLKEGK 174

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 28  LKIVGVGYKARAEAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVH 85
           +++    +  +   EG  + ++  LG       T+     V      +    G D   V 
Sbjct: 85  MEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELT-VSGPDIEAVG 143

Query: 86  QFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKK 119
           Q AA +         K   +      I +K  + 
Sbjct: 144 QTAADIEQLTRIND-KDVRVFQDGVYITRKPNRG 176

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 24  FFRFLKIVGVGYKA--RAEAEGRLLYLKL----GYVHDVELTVPPAVRVFCLKNNVVCCC 77
           F   ++ V   +      +  G L+ ++      Y+  V +    A  V   + + +   
Sbjct: 88  FRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILE 147

Query: 78  GLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI--KKKVGKKKSK 122
           G D   V   AA ++        K K I    + I   +K   +++ 
Sbjct: 148 GNDIELVSNSAALIQQ---ATTVKNKDIRKFLDGIYVSEKGTVQQAD 191

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 23  KFFRFLKIVGVGYKA--RAEAEGRLLYLK--LGYVHDVELTVPP--AVRVFCLKNNVVCC 76
            +   +K+    +        +G  + +K  LG      +   P   +     + N +  
Sbjct: 85  GYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL 144

Query: 77  CGLDKHRVHQFAASVR-SCKPPEPFKGKGI 105
            G+D + V Q  A +  SC      K K I
Sbjct: 145 QGIDLNNVSQTCALIHQSCLV----KEKDI 170

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 28  LKIVGVGYKA------RAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKN--NVVCCCGL 79
           ++ V   +        +  A+   +   LG      + V   V +    N  + +   G 
Sbjct: 90  MRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGN 149

Query: 80  DKHRVHQFAASVRSCKPPEPFKGKGI 105
               V Q AA ++        + K I
Sbjct: 150 SVEDVSQNAADLQQIC---RVRNKDI 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1rl6_A	177	Protein (ribosomal protein L6); RNA-binding protei	100.0
1nkw_E	212	50S ribosomal protein L6; ribosome, large subunit,	100.0
3r8s_G	176	50S ribosomal protein L6; protein biosynthesis, RN	100.0
3bbo_I	223	Ribosomal protein L6; large ribosomal subunit, spi	100.0
2zjr_E	185	50S ribosomal protein L6; ribosome, large ribosoma	100.0
3v2d_H	180	50S ribosomal protein L6; ribosome associated inhi	100.0
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	100.0
3j21_F	184	50S ribosomal protein L6P; archaea, archaeal, KINK	100.0
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	100.0
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	99.97
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	99.97
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	99.97
2cql_A	100	OK/SW-CL.103, 60S ribosomal protein L9; N-terminal	81.14

>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J

Probab=100.00  E-value=5.4e-50  Score=305.12  Aligned_cols=107  Identities=35%  Similarity=0.628  Sum_probs=99.5

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+|
T Consensus        70 li~Nmi~GVt~Gf~~~L~lvGvGyra~~--~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~Vgq~AA~I  147 (177)
T 1rl6_A           70 LLANMVEGVSKGYEKALELVGVGYRASK--QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANI  147 (177)
T ss_dssp             HHHHHHHHHHTCEEEEEEEESTTCEEEE--ETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred             HHhCEEEeEcCCcEEEEEEEeeceEEEe--cCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHHHHHHHHHH
Confidence            6899999999999999999999999997  89999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCccc
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKK  120 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~  120 (122)
                      |+||+|||||||||+|.||+|++|+||++
T Consensus       148 r~~R~PepYKGKGI~y~~E~i~~K~gK~~  176 (177)
T 1rl6_A          148 RAVRPPEPYKGKGIRYEGELVRLKEGKTG  176 (177)
T ss_dssp             HTTSCCCTTTCCEEEETTCCCCC------
T ss_pred             hccCCCCCcCCCcEeECCeEEEEcCccCC
Confidence            99999999999999999999999999985

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*

Probab=100.00  E-value=3.4e-49  Score=308.10  Aligned_cols=109  Identities=28%  Similarity=0.497  Sum_probs=105.9

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|||.||||||+|
T Consensus        98 lI~NMI~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~VGq~AA~I  175 (212)
T 1nkw_E           98 LVANAVKGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANV  175 (212)
T ss_pred             HhhCEEEeeccCeEEEEEEeeeeeEEEc--CCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHH
Confidence            6899999999999999999999999997  89999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCcccCC
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK  122 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~~  122 (122)
                      |+||+|||||||||+|.||+|++|+||++|+
T Consensus       176 R~~R~PEPYKGKGIry~~E~I~rK~gK~~k~  206 (212)
T 1nkw_E          176 RKVRKPDAYHGKGVRFVGEQIALKAGKAGAT  206 (212)
T ss_pred             hccCCCCCcCCCcEeECCeEEEEcCccccCC
Confidence            9999999999999999999999999998653

>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...

Probab=100.00  E-value=4.4e-49  Score=299.72  Aligned_cols=107  Identities=36%  Similarity=0.658  Sum_probs=104.7

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+++|+||||++  +|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.|+||||+|
T Consensus        70 li~NmI~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~I  147 (176)
T 3r8s_G           70 LLNSMVIGVTEGFTKKLQLVGVGYRAAV--KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADL  147 (176)
T ss_dssp             HHHHTTTHHHHCEEECEEEESTTCEEEC--SSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred             HHHhHhhhcccCeEEEEEEeeeeeEEEe--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHh
Confidence            5899999999999999999999999997  89999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCccc
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKK  120 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~  120 (122)
                      |+||+|||||||||+|.||+|++|+||||
T Consensus       148 r~~R~PepYKGKGI~y~~E~i~~K~gKkk  176 (176)
T 3r8s_G          148 RAYRRPEPYKGKGVRYADEVVRTKEAKKK  176 (176)
T ss_dssp             HHTTCCCSSSCCEEEESSCCCCCCCCCCC
T ss_pred             hccCCCCCccCCceeECCeEEEeccccCC
Confidence            99999999999999999999999999985

>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=2.5e-49  Score=310.80  Aligned_cols=108  Identities=38%  Similarity=0.716  Sum_probs=105.2

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+|
T Consensus       114 lI~NMI~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiDKq~Vgq~AA~I  191 (223)
T 3bbo_I          114 LTDNMVVGVSKGFEKKLILVGVGYRATV--DGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV  191 (223)
T ss_dssp             TTTHHHHHTTTCEEECEECCSTTCCEEE--CSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHHHHT
T ss_pred             HhhcEEEeeccCcEEEEEEeeeceEEEe--cCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHH
Confidence            6899999999999999999999999997  89999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKS  121 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~  121 (122)
                      |+||+|||||||||+|.||+|++|+||++|
T Consensus       192 R~~R~PEPYKGKGI~y~~E~I~rK~gK~~k  221 (223)
T 3bbo_I          192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGK  221 (223)
T ss_dssp             TSSSCCCTTTCCSCEETTCCCCCCCCCCSC
T ss_pred             hccCCCCCcCCCcEeECCeEEEEecccccc
Confidence            999999999999999999999999999843

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H

Probab=100.00  E-value=5e-50  Score=307.22  Aligned_cols=108  Identities=29%  Similarity=0.501  Sum_probs=103.5

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.|+||||+|
T Consensus        71 lI~NmI~GVt~Gf~kkL~lvGvGYra~~--~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~Vgq~AA~I  148 (185)
T 2zjr_E           71 LVANAVKGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANV  148 (185)
T ss_dssp             HHHHHHHHHHHCEEEEEECBSTTCCCCC--BTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHH
T ss_pred             HhhcEEeeeccCcEEEEEEeeeccEEEE--cCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHHHHHHHHHH
Confidence            6899999999999999999999999996  89999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKS  121 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~  121 (122)
                      |+||+|||||||||+|.||+|++|+||++|
T Consensus       149 r~~R~PepYKGKGI~y~~E~i~~K~gK~~k  178 (185)
T 2zjr_E          149 RKVRKPDAYHGKGVRFVGEQIALKAGKAGA  178 (185)
T ss_dssp             HHHTCCCTTTCCBCCCSSCCCCCCCCC---
T ss_pred             hccCCCCCcCCCcEeECCeEEEEcCccccC
Confidence            999999999999999999999999999865

>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...

Probab=100.00  E-value=1.1e-48  Score=298.54  Aligned_cols=109  Identities=31%  Similarity=0.515  Sum_probs=103.5

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV   91 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I   91 (122)
                      +++||+.||++||+++|+++|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.|+||||+|
T Consensus        71 li~NmI~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~I  148 (180)
T 3v2d_H           71 LIANAVKGVSEGYSKELLIKGIGYRARL--VGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANI  148 (180)
T ss_dssp             HHHHHHHHHHTCEEEEEEEESTTCEEEE--ETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHHHHHHHHHHH
T ss_pred             HHhhhEEeecCCcEEEEEEEEEeeEEEE--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHh
Confidence            5899999999999999999999999987  89999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCceeecCeEEEecCCcccCC
Q 033325           92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK  122 (122)
Q Consensus        92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~~  122 (122)
                      |++|+|||||||||+|+||+|++|+||+++|
T Consensus       149 r~~r~PepYKGKGIry~~e~I~~K~gK~~~k  179 (180)
T 3v2d_H          149 RAIRKPSAYHEKGIYYAGEPVRLKPGKAGAK  179 (180)
T ss_dssp             HHHTCCCSSSSCEEEETTCCCCCCCCC----
T ss_pred             cccCCCCCcCCCcccCCCEEEEEeCccccCC
Confidence            9999999999999999999999999998643

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...

Probab=100.00  E-value=2.3e-37  Score=235.83  Aligned_cols=99  Identities=15%  Similarity=0.097  Sum_probs=95.3

Q ss_pred             ehhhHhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF   87 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGY--r~~~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~Vgqf   87 (122)
                      +++||+.||++||+++|+++|+||  ||++  +|+.|.|  +||||||+.++||+||++++++ |+|+|+|+|||.||||
T Consensus        69 li~Nmi~GVt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G~Dkq~Vgq~  145 (178)
T 1vq8_E           69 HIENMFHGVTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQT  145 (178)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHH
T ss_pred             HHcCEEEEEccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEECCHHHHHHH
Confidence            689999999999999999999999  7877  8999999  9999999999999999999999 8999999999999999


Q ss_pred             HHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325           88 AASVRSCKPPEPFKGKGI--MYTDEVIKKKV  116 (122)
Q Consensus        88 Aa~Ir~~r~pepYKGKGI--~~~~E~I~~K~  116 (122)
                      ||+||++|+|   |||||  |+||++|..|.
T Consensus       146 AA~Ir~~r~p---KGKGIr~F~DGiyi~~k~  173 (178)
T 1vq8_E          146 AADIEQLTRI---NDKDVRVFQDGVYITRKP  173 (178)
T ss_dssp             HHHHHHTTCC---SSSCTTTCCCEEEEEECC
T ss_pred             HHHHhccCCC---CCCceeEEECCEEEEecc
Confidence            9999999999   99999  89999999884

>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=4.2e-34  Score=218.73  Aligned_cols=104  Identities=20%  Similarity=0.206  Sum_probs=95.6

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEE--eccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAA   89 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa   89 (122)
                      +++||+.||++||+++|+++|+|||+....+|+.|.|.  ||||||+.++||+||+++++++ +|+|+|+|||.|+||||
T Consensus        74 li~NmI~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~Dke~Vgq~AA  152 (184)
T 3j21_F           74 HIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGIDKEAVGQTAA  152 (184)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESCHHHHHHHHH
T ss_pred             HHHhhheeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECCHHHHHHHHH
Confidence            58999999999999999999999944444489999885  9999999999999999999997 99999999999999999


Q ss_pred             HhhccCCCCCCCCCceee--cCeEEEecCCcc
Q 033325           90 SVRSCKPPEPFKGKGIMY--TDEVIKKKVGKK  119 (122)
Q Consensus        90 ~Ir~~r~pepYKGKGI~~--~~E~I~~K~gKk  119 (122)
                      +||++++   ||||+||.  ||.||..|.||.
T Consensus       153 ~Ir~~~~---vK~KDiR~F~DGiyv~ek~~~~  181 (184)
T 3j21_F          153 NIEQATR---ITKWDRRIFQDGIYIVEKAGKP  181 (184)
T ss_dssp             HHHHHHC---CCSSCSSSCCCEEEESCSSSCC
T ss_pred             HHhhccc---cCCCcccEeeCCEEEEecCccc
Confidence            9999998   89999876  899999998874

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=9e-34  Score=218.01  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=94.3

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEE--EeccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEEEecCHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKAR--AEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHRVH   85 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~--~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~Vg   85 (122)
                      +++||+.||++||+++|+|+|+||||+  ++.+|+.|.|  +||||||+.++||+||+++++++  |+|+|+|+|||.||
T Consensus        76 li~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vg  155 (192)
T 2zkr_e           76 HVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVS  155 (192)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHH
T ss_pred             HHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHH
Confidence            689999999999999999999999998  5558899999  89999999999999999999987  99999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCc--eeecCeEEEec
Q 033325           86 QFAASVRSCKPPEPFKGKG--IMYTDEVIKKK  115 (122)
Q Consensus        86 qfAa~Ir~~r~pepYKGKG--I~~~~E~I~~K  115 (122)
                      ||||+||+++++   |+|+  .|.||.|+.-|
T Consensus       156 q~AA~IR~~~~v---k~kD~R~F~Dgiyv~~k  184 (192)
T 2zkr_e          156 NSAALIQQATTV---KNKDIRKFLDGIYVSEK  184 (192)
T ss_dssp             HHHHHHHHHTCC---SSSCTTTCCCEEEEEEC
T ss_pred             HHHHHHHhhCcC---CCCCccEeecCEEEEEe
Confidence            999999999999   7777  46789999877

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E

Probab=99.97  E-value=4.1e-31  Score=202.75  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=93.1

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeEEE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEEEecCHHHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKARA--EAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHRVH   85 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~--~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~Vg   85 (122)
                      +++||+.||++||.++|+++|+||||++  +.+|+.|.|+  ||||||+.++||+||+++++++  |+|+|+|+|||.||
T Consensus        74 li~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vg  153 (188)
T 4a17_E           74 QIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVS  153 (188)
T ss_dssp             HHHHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHH
T ss_pred             HHHhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHH
Confidence            5899999999999999999999999664  4578999995  9999999999999999999998  89999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325           86 QFAASVRSCKPPEPFKGKGI--MYTDEVIKKKV  116 (122)
Q Consensus        86 qfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~  116 (122)
                      ||||+||+....   |+|+|  |.||.||..|.
T Consensus       154 q~AA~Ir~~~~v---k~kD~R~F~DGiyv~ek~  183 (188)
T 4a17_E          154 QTCALIHQSCLV---KEKDIRQFLDGIYVSDKR  183 (188)
T ss_dssp             HHHHHHHHHTCC---CSSCHHHHCCEEEEEEEE
T ss_pred             HHHHHHHhhccc---CCCcccEeecCeEEEEeE
Confidence            999999999865   88885  56899998774

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H

Probab=99.97  E-value=7.9e-31  Score=201.55  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             ehhhHhhccccceEEEEEEEEEEeeE--EE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEEEecCHHH
Q 033325           12 CYKFTLTRMEAKFFRFLKIVGVGYKA--RA--EAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHR   83 (122)
Q Consensus        12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~--~~--~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~   83 (122)
                      +++||+.||++||.++|+++|+|||+  .+  +.+|+.|.|+  ||||||+.++||+||+++++++  |+|+|+|+|||.
T Consensus        74 li~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~  153 (191)
T 3u5e_H           74 LVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVED  153 (191)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHH
T ss_pred             HHHhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHH
Confidence            58999999999999999999999995  44  4488999995  9999999999999999999996  999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325           84 VHQFAASVRSCKPPEPFKGKGI--MYTDEVIKKKV  116 (122)
Q Consensus        84 VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~  116 (122)
                      ||||||+||+....   |+|+|  |.||.||..|.
T Consensus       154 Vgq~AA~Irq~~~v---k~kD~R~FlDGiyv~ek~  185 (191)
T 3u5e_H          154 VSQNAADLQQICRV---RNKDIRKFLDGIYVSHKG  185 (191)
T ss_dssp             HHHHHHHHHHTTCC---CSSCTTTCCCEEEEEEEE
T ss_pred             HHHHHHHHHhhccc---CCCcccEeecCeEEEEee
Confidence            99999999998765   77774  67999998774

>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1

Probab=81.14  E-value=1.2  Score=30.19  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=19.6

Q ss_pred             eeeCCCCcEEEecCCeEEEEEecC
Q 033325           57 ELTVPPAVRVFCLKNNVVCCCGLD   80 (122)
Q Consensus        57 ~~~IP~~v~v~~~~~t~I~l~Gid   80 (122)
                      .+.||+||+|++.+ +.|+++|.-
T Consensus        16 pI~IP~gV~V~i~~-~~VtVKGPk   38 (100)
T 2cql_A           16 TVDIPENVDITLKG-RTVIVKGPR   38 (100)
T ss_dssp             EECCCSSCEEEEET-TEEEEEETT
T ss_pred             cEEcCCCCEEEEeC-CEEEEECCC
Confidence            46899999999987 589999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d2qamg2	95	d.141.1.1 (G:82-176) Ribosomal protein L6 {Escheri	9e-32
d2j01h2	89	d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus	1e-28
d1rl6a2	89	d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillu	1e-28
d2zjre1	90	d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinoco	2e-25

>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (265), Expect = 9e-32
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct: 1   FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
           + Q AA +R+ + PEP+KGKG+ Y DEV++ K  KKK
Sbjct: 59  IGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 95

>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

 Score = 97.8 bits (244), Expect = 1e-28
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY  RA   GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 1   YSKELLIKGIGY--RARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIK 113
           V Q AA++R+ + P  +  KGI Y  E ++
Sbjct: 59  VGQVAANIRAIRKPSAYHEKGIYYAGEPVR 88

>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 97.4 bits (243), Expect = 1e-28
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + +       +   G DK R
Sbjct: 1   YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIK 113
           V + AA++R+ +PPEP+KGKGI Y  E+++
Sbjct: 59  VGELAANIRAVRPPEPYKGKGIRYEGELVR 88

>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 89.8 bits (223), Expect = 2e-25
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           +   L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  
Sbjct: 1   YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKK 115
           V Q AA+VR  + P+ + GKG+ +  E I  K
Sbjct: 59  VGQVAANVRKVRKPDAYHGKGVRFVGEQIALK 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d2qamg2	95	Ribosomal protein L6 {Escherichia coli [TaxId: 562	100.0
d1rl6a2	89	Ribosomal protein L6 {Bacillus stearothermophilus	100.0
d2zjre1	90	Ribosomal protein L6 {Deinococcus radiodurans [Tax	100.0
d2j01h2	89	Ribosomal protein L6 {Thermus thermophilus [TaxId:	100.0
d1vqoe2	93	Ribosomal protein L6 {Archaeon Haloarcula marismor	99.73
d1rl6a1	75	Ribosomal protein L6 {Bacillus stearothermophilus	83.78
d2cqla1	87	Ribosomal protein L6 {Human (Homo sapiens) [TaxId:	83.49
d1vqoe1	79	Ribosomal protein L6 {Archaeon Haloarcula marismor	80.62

>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-48  Score=267.17  Aligned_cols=95  Identities=40%  Similarity=0.753  Sum_probs=92.5

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 033325           24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGK  103 (122)
Q Consensus        24 f~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~Ir~~r~pepYKGK  103 (122)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||+||+++++++|.|+|+|+|||.||||||.||++|+|||||||
T Consensus         1 f~k~L~lvGVGYRa~~--~g~~L~l~LGySH~i~~~iP~gI~v~~~~~t~i~i~g~dKq~vg~~Aa~Ir~~r~pepYKGK   78 (95)
T d2qamg2           1 FTKKLQLVGVGYRAAV--KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK   78 (95)
T ss_dssp             CCCCCCBCSSSCCCCC--CTTEECCCSSSSSCCCEECCSSEECCCSSTTCCCCEESCHHHHHHHHHHHHTTTCCCTTSCC
T ss_pred             CeEEEEEEeEEEEEEE--cCCEEEEEEecceeceecCCCCcEEEecCCCEEEEEEcCHHHHHHHHHHHhccCCCCCcCCC
Confidence            6789999999999987  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCeEEEecCCccc
Q 033325          104 GIMYTDEVIKKKVGKKK  120 (122)
Q Consensus       104 GI~~~~E~I~~K~gKk~  120 (122)
                      ||+|.||+|++|+||||
T Consensus        79 GI~y~~E~i~~K~gKkK   95 (95)
T d2qamg2          79 GVRYADEVVRTKEAKKK   95 (95)
T ss_dssp             SBCCTTCCCCCCCCCCC
T ss_pred             cEeECCeEEEeccccCC
Confidence            99999999999999975

>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.8e-44  Score=245.60  Aligned_cols=89  Identities=38%  Similarity=0.734  Sum_probs=86.8

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 033325           24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGK  103 (122)
Q Consensus        24 f~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~Ir~~r~pepYKGK  103 (122)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||++|+++++++|.|+++|+|||.||||||.||++|+|||||||
T Consensus         1 f~k~L~lvGVGYra~~--~g~~L~l~LGySH~I~~~iP~~i~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGK   78 (89)
T d1rl6a2           1 YEKALELVGVGYRASK--QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGK   78 (89)
T ss_dssp             EEEEEEEESTTCEEEE--ETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCC
T ss_pred             CeEEEEEEEEEEEEEe--cCCEEEEEEeecceEEEeCCCCcEEEecCCceeEEEEcCHHHHHHHHHHHhhcCCCCCcCCC
Confidence            7899999999999997  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCeEEEe
Q 033325          104 GIMYTDEVIKK  114 (122)
Q Consensus       104 GI~~~~E~I~~  114 (122)
                      ||+|+||.|++
T Consensus        79 GI~y~~E~Irl   89 (89)
T d1rl6a2          79 GIRYEGELVRL   89 (89)
T ss_dssp             EEEETTCCCCC
T ss_pred             CEeECCEEEeC
Confidence            99999999875

>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=4.5e-45  Score=250.64  Aligned_cols=90  Identities=32%  Similarity=0.581  Sum_probs=88.2

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 033325           24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGK  103 (122)
Q Consensus        24 f~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~Ir~~r~pepYKGK  103 (122)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||++|+++++++|.|+++|+|||.||||||.||++|||||||||
T Consensus         1 f~k~L~lvGVGYra~~--~g~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGK   78 (90)
T d2zjre1           1 YTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK   78 (90)
T ss_dssp             EEEEEECBSTTCCCCC--BTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred             CEEEEEEEEEEEEEEe--cCCEEEEEEeeeeeeeeecCCCeEEEecCCCEEEEEEcCHHHHHHHHHHHHhhCCCCCccCC
Confidence            7899999999999987  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCeEEEec
Q 033325          104 GIMYTDEVIKKK  115 (122)
Q Consensus       104 GI~~~~E~I~~K  115 (122)
                      ||+|.||+|++|
T Consensus        79 GI~y~~E~i~~K   90 (90)
T d2zjre1          79 GVRFVGEQIALK   90 (90)
T ss_dssp             BCCCSSCCCCCC
T ss_pred             CEeECCeEEEcC
Confidence            999999999987

>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-44  Score=248.45  Aligned_cols=89  Identities=34%  Similarity=0.590  Sum_probs=86.1

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 033325           24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGK  103 (122)
Q Consensus        24 f~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~Ir~~r~pepYKGK  103 (122)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||++|+++++++|.|+++|+|||.||||||.||++|||||||||
T Consensus         1 f~k~LelvGVGYra~~--~g~~L~l~LGySH~I~~~iP~~I~v~~~~~t~i~i~g~dK~~vg~~aa~IR~~r~pepYKGK   78 (89)
T d2j01h2           1 YSKELLIKGIGYRARL--VGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK   78 (89)
T ss_dssp             CCCEECCCSSSCEECC--BTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSS
T ss_pred             CeEEEEEEEEEEEEEE--eCCEEEEEEeccccccccCCCCeEEEecCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCC
Confidence            7889999999999997  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCeEEEe
Q 033325          104 GIMYTDEVIKK  114 (122)
Q Consensus       104 GI~~~~E~I~~  114 (122)
                      ||+|.||+|++
T Consensus        79 GI~y~~E~irL   89 (89)
T d2j01h2          79 GIYYAGEPVRL   89 (89)
T ss_dssp             SCCCSSCCCC-
T ss_pred             cEeECCEEEeC
Confidence            99999999875

>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.73  E-value=6.3e-18  Score=115.32  Aligned_cols=89  Identities=17%  Similarity=0.113  Sum_probs=81.4

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCC
Q 033325           24 FFRFLKIVGVGYKARAEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFK  101 (122)
Q Consensus        24 f~~~L~lvGvGYr~~~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~Ir~~r~pepYK  101 (122)
                      |.++|++++.||++.++.+|+.+.+  +||..+|+.++||+|++|++.+ .+|+|+|+|+|.|+|+||+|++.-..   |
T Consensus         1 f~Ykmk~vyaHFPi~v~v~g~~v~I~NFlGEK~~R~~~i~~gv~v~v~~-deiiv~G~d~E~V~qtAA~Ieq~t~v---k   76 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTRI---N   76 (93)
T ss_dssp             EEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHHHHHHHHTTCC---S
T ss_pred             CEEEEEEEEEeCCeEEEEcCCEEEEEeccCCceeEEEEecCCCeeEEcC-CEEEEEcCCHHHHHHHHHHHHHhhcc---C
Confidence            7899999999999999999999999  6999999999999999999987 59999999999999999999998776   5


Q ss_pred             CC--ceeecCeEEEecC
Q 033325          102 GK--GIMYTDEVIKKKV  116 (122)
Q Consensus       102 GK--GI~~~~E~I~~K~  116 (122)
                      +|  .+|.||.+|..|+
T Consensus        77 ~kD~R~FlDGIYv~eKp   93 (93)
T d1vqoe2          77 DKDVRVFQDGVYITRKP   93 (93)
T ss_dssp             SSCTTTCCCEEEEEECC
T ss_pred             CCCccEeecCEEEEecC
Confidence            55  4789999998774

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.78  E-value=0.44  Score=28.99  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=17.9

Q ss_pred             eeCCCCcEEEecCCeEEEEEecC
Q 033325           58 LTVPPAVRVFCLKNNVVCCCGLD   80 (122)
Q Consensus        58 ~~IP~~v~v~~~~~t~I~l~Gid   80 (122)
                      +.||++|+|++.+ +.|+++|..
T Consensus         2 I~IP~gV~v~i~~-~~i~vkGpk   23 (75)
T d1rl6a1           2 IEIPAGVTVTVNG-NTVTVKGPK   23 (75)
T ss_dssp             EECCTTCEEEEET-TEEEEEETT
T ss_pred             cCCCCCcEEEEEC-CEEEEEeCC
Confidence            4789999999877 488888865

>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.49  E-value=0.42  Score=29.68  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             eeeeCCCCcEEEecCCeEEEEEecCHH
Q 033325           56 VELTVPPAVRVFCLKNNVVCCCGLDKH   82 (122)
Q Consensus        56 i~~~IP~~v~v~~~~~t~I~l~GidK~   82 (122)
                      ..+.||+||+|++.++ .|+++|.--+
T Consensus         8 ~~I~IP~gV~v~i~~~-~i~vkGpkG~   33 (87)
T d2cqla1           8 QTVDIPENVDITLKGR-TVIVKGPRGT   33 (87)
T ss_dssp             EEECCCSSCEEEEETT-EEEEEETTEE
T ss_pred             CcEECCCCCEEEEeCC-EEEEEcCCcE
Confidence            3578999999999884 7999987643

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.62  E-value=0.72  Score=28.09  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=20.4

Q ss_pred             eeeCCCCcEEEecCCeEEEEEecCH
Q 033325           57 ELTVPPAVRVFCLKNNVVCCCGLDK   81 (122)
Q Consensus        57 ~~~IP~~v~v~~~~~t~I~l~GidK   81 (122)
                      .+.||++|+|++.+ +.|++.|..-
T Consensus         4 ~I~IP~~V~v~i~~-~~i~vkGp~G   27 (79)
T d1vqoe1           4 ELEIPEDVDAEQDH-LDITVEGDNG   27 (79)
T ss_dssp             EEECCSSCEEEEET-TEEEEEETTE
T ss_pred             eeECCCCcEEEEeC-CEEEEEcCCe
Confidence            57899999999987 5899998764