Citrus Sinensis ID: 033340

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccc
Coil and Loop (DISEMBL)
MRIVEALEskgcrlplmkgEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVqansigaggsiclpgstkiHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS
Flexible Loop (DISEMBL)
mrivealeskgcrlplmkGEVELAEKLASITrqlkgsgaelSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMaedsqmtedvs
Low Complexity Region (SEG)
MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS
Disordered region (IsUnstruct)
*******************************************RVQNLLTVSRVQANSIGAGGSICLPGSTKI**********VL**QTEAIARLGNVLKRDIRDMEII************
Disordered Region (DISOPRED)
*R**EA*ESKGCRLPLMKGEVELAEKLASIT***********RRVQNLLTVSRV************LPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAE*********
Disordered Region (DISEMBL)
MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAED********
Disordered Region (DISPRO)
*RIVE****KGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAED********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
255547750	395	conserved hypothetical protein [Ricinus	1.0	0.306	0.876	2e-56
225425478	371	PREDICTED: nuclear pore complex protein	0.983	0.320	0.882	5e-55
297738423	265	unnamed protein product [Vitis vinifera]	0.983	0.449	0.882	4e-54
449435057	389	PREDICTED: uncharacterized protein LOC10	1.0	0.311	0.834	1e-51
224100027	370	predicted protein [Populus trichocarpa]	0.975	0.318	0.864	5e-51
224107623	270	predicted protein [Populus trichocarpa]	0.942	0.422	0.868	1e-50
356566511	391	PREDICTED: uncharacterized protein LOC10	0.983	0.304	0.823	3e-50
356538091	349	PREDICTED: nuclear pore complex protein	0.950	0.329	0.826	2e-48
297851152	376	hypothetical protein ARALYDRAFT_472914 [	0.983	0.316	0.747	2e-45
15221725	377	uncharacterized protein [Arabidopsis tha	0.983	0.315	0.747	6e-45

>gi|255547750|ref|XP_002514932.1| conserved hypothetical protein [Ricinus communis] gi|223545983|gb|EEF47486.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 117/121 (96%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRI+EALE KG R+PLMKGE ELAEKLA+ITRQLKGSGAELSRRVQNLLTVSR+QAN++G
Sbjct: 275 MRIMEALEGKGYRMPLMKGETELAEKLAAITRQLKGSGAELSRRVQNLLTVSRIQANALG 334

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDV 120
           AGGSI LPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRD+RDMEIIMAED++M++DV
Sbjct: 335 AGGSIYLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDMRDMEIIMAEDTEMSQDV 394

Query: 121 S 121
           S
Sbjct: 395 S 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425478|ref|XP_002279552.1| PREDICTED: nuclear pore complex protein Nup54-like [Vitis vinifera]

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/119 (88%), Positives = 113/119 (94%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRIVEALE KG RLPLMKGEVEL EKLA+ITRQLKGSGAELSRRVQNLLT+SRVQAN+IG
Sbjct: 251 MRIVEALEGKGYRLPLMKGEVELVEKLAAITRQLKGSGAELSRRVQNLLTISRVQANAIG 310

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
            GGS+ LPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRD RDMEIIM+ED++MT+D
Sbjct: 311 GGGSVYLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDSRDMEIIMSEDTEMTQD 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738423|emb|CBI27624.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/119 (88%), Positives = 113/119 (94%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRIVEALE KG RLPLMKGEVEL EKLA+ITRQLKGSGAELSRRVQNLLT+SRVQAN+IG
Sbjct: 145 MRIVEALEGKGYRLPLMKGEVELVEKLAAITRQLKGSGAELSRRVQNLLTISRVQANAIG 204

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
            GGS+ LPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRD RDMEIIM+ED++MT+D
Sbjct: 205 GGGSVYLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDSRDMEIIMSEDTEMTQD 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435057|ref|XP_004135312.1| PREDICTED: uncharacterized protein LOC101211067 [Cucumis sativus] gi|449494920|ref|XP_004159683.1| PREDICTED: uncharacterized LOC101211067 [Cucumis sativus]

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 107/121 (88%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRIVEALESKGCR+P+MKGE ELAEKLA ITRQLKGSGAELSRRVQNLLTV+R QAN  G
Sbjct: 269 MRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSG 328

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDV 120
            G SI   GS KIHEQSLADMQEVLQQQTEAIARLGNVLKRD+RDMEIIMAED +M +D 
Sbjct: 329 PGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMADDA 388

Query: 121 S 121
           S
Sbjct: 389 S 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100027|ref|XP_002311716.1| predicted protein [Populus trichocarpa] gi|222851536|gb|EEE89083.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (519), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 108/118 (91%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRI+EALE KG RLPL K E ELAEKLA+I RQLKGSGAELSRRVQNLLTVSRVQ N IG
Sbjct: 253 MRIMEALEGKGFRLPLTKAEAELAEKLAAIIRQLKGSGAELSRRVQNLLTVSRVQENGIG 312

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTE 118
           AGGS+ LPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEI+MAE ++MTE
Sbjct: 313 AGGSLYLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIMMAEGTEMTE 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107623|ref|XP_002314540.1| predicted protein [Populus trichocarpa] gi|222863580|gb|EEF00711.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 105/114 (92%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRI+EALE KGCRLPL KGE ELAEKL +I RQLKGSGAE SRRV NLLTVSRVQAN IG
Sbjct: 157 MRIMEALEGKGCRLPLTKGEAELAEKLVAIIRQLKGSGAEFSRRVHNLLTVSRVQANGIG 216

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDS 114
           AGGS+ LPGSTKIHE+SLADMQEVLQQQTEAIARLGNVLKRDIRDMEI+MAED+
Sbjct: 217 AGGSLYLPGSTKIHEESLADMQEVLQQQTEAIARLGNVLKRDIRDMEIMMAEDT 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566511|ref|XP_003551474.1| PREDICTED: uncharacterized protein LOC100797030 [Glycine max]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 107/119 (89%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRIVEALE KGCR+PL KGE ELAEKLA+ITRQLKGSGAELSRRVQNLLTVSRV+ANS G
Sbjct: 269 MRIVEALEEKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLTVSRVKANSNG 328

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
            G S+ LPGSTKIHEQSL D+QEVLQQQ EAIARLG+VLKRDIRDMEI+M ED+  TE+
Sbjct: 329 FGSSVYLPGSTKIHEQSLGDLQEVLQQQMEAIARLGSVLKRDIRDMEIMMTEDTARTEN 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538091|ref|XP_003537538.1| PREDICTED: nuclear pore complex protein Nup54-like [Glycine max]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 104/115 (90%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRIVEALE KGCR+PL KGE ELAEKLA+ITR+LKGSGAELSRRVQNLL VSRV+ANS G
Sbjct: 234 MRIVEALEEKGCRIPLTKGEAELAEKLATITRKLKGSGAELSRRVQNLLIVSRVKANSNG 293

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQ 115
            G S+ LPGSTKIHEQSL D+QEVLQQQ EAIARLGNVLKRDIRDMEI+M ED++
Sbjct: 294 FGSSVYLPGSTKIHEQSLGDLQEVLQQQLEAIARLGNVLKRDIRDMEIMMTEDTK 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851152|ref|XP_002893457.1| hypothetical protein ARALYDRAFT_472914 [Arabidopsis lyrata subsp. lyrata] gi|297339299|gb|EFH69716.1| hypothetical protein ARALYDRAFT_472914 [Arabidopsis lyrata subsp. lyrata]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 103/119 (86%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRI+E LE KG RLPL KGE EL+EKL +ITRQ+KG GAELSRRVQ+L T+SR QANSI 
Sbjct: 257 MRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELSRRVQSLQTISRAQANSIA 316

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
           AG S+ LPGSTKI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED++M +D
Sbjct: 317 AGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRDMRDMEIMVAEDTEMAQD 375

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221725|ref|NP_173841.1| uncharacterized protein [Arabidopsis thaliana] gi|26450407|dbj|BAC42318.1| unknown protein [Arabidopsis thaliana] gi|28827332|gb|AAO50510.1| unknown protein [Arabidopsis thaliana] gi|332192394|gb|AEE30515.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 102/119 (85%)

Query: 1   MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
           MRI+E LE KG RLPL KGE EL+EKL +ITRQ+KG GAELSRRVQ+L T+SR QANSI 
Sbjct: 258 MRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELSRRVQSLQTISRAQANSIA 317

Query: 61  AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
           AG S+ LPGSTKI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED++M  D
Sbjct: 318 AGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRDMRDMEIMVAEDTEMALD 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2032417	377	AT1G24310 "AT1G24310" [Arabido	0.983	0.315	0.747	2.8e-41

TAIR|locus:2032417 AT1G24310 "AT1G24310" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 89/119 (74%), Positives = 102/119 (85%)

Query:     1 MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIG 60
             MRI+E LE KG RLPL KGE EL+EKL +ITRQ+KG GAELSRRVQ+L T+SR QANSI 
Sbjct:   258 MRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELSRRVQSLQTISRAQANSIA 317

Query:    61 AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
             AG S+ LPGSTKI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED++M  D
Sbjct:   318 AGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRDMRDMEIMVAEDTEMALD 376


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.334    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  10 23  0.38    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  120 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.75u 0.10s 18.85t   Elapsed:  00:00:01
  Total cpu time:  18.75u 0.10s 18.85t   Elapsed:  00:00:01
  Start:  Fri May 10 23:51:19 2013   End:  Fri May 10 23:51:20 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002844001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (265 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	99.93
PF13874	141	Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B	98.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.99

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3e-26  Score=200.04  Aligned_cols=111  Identities=32%  Similarity=0.416  Sum_probs=103.7

Q ss_pred             ChhhhhhhccCCCCCCCchHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHH
Q 033340            1 MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLAD   80 (121)
Q Consensus         1 mr~v~ale~~g~~~~L~~eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~e   80 (121)
                      |+.+|-|++|||  ||+|+||+|++||.+|++++| +|+||++||++|.+++|||+      +++|++++|++|.+.+.|
T Consensus       396 ~ikqeilr~~G~--~L~~~EE~Lr~Kldtll~~ln-~Pnq~k~Rl~~L~e~~r~q~------~~~~~~~~~~iD~~~~~e  466 (508)
T KOG3091|consen  396 MIKQEILRKRGY--ALTPDEEELRAKLDTLLAQLN-APNQLKARLDELYEILRMQN------SQLKLQESYWIDFDKLIE  466 (508)
T ss_pred             HHHHHHHhccCC--cCCccHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhc------chhccccceeechhhhHH
Confidence            566788888887  999999999999999999999 99999999999999999998      456678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccccc
Q 033340           81 MQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDV  120 (121)
Q Consensus        81 mk~~L~qQqeaia~L~~Vlk~D~rDl~iI~~~~t~~~~~~  120 (121)
                      |++||+|||++|.+|++|||+|+|||++...||+++..++
T Consensus       467 ~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~l~E~~~~~~~~  506 (508)
T KOG3091|consen  467 MKEHLTQEQEALTKLVNILKGDQEDIKHQLIEDLEICRKS  506 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHhhh
Confidence            9999999999999999999999999999999999987654

>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B

Probab=98.82  E-value=6.2e-10  Score=82.63  Aligned_cols=50  Identities=32%  Similarity=0.464  Sum_probs=6.2

Q ss_pred             ChhhhhhhccCCCCCCCchHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Q 033340            1 MRIVEALESKGCRLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSR   53 (121)
Q Consensus         1 mr~v~ale~~g~~~~L~~eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~R   53 (121)
                      |+.+|.|.++||  ||+++|++|+.+|+.|.++|+ +|++|+||++||.+++|
T Consensus        92 ~~~~eilr~~g~--~l~~eEe~L~~~le~l~~~l~-~p~~~~~rl~El~a~l~  141 (141)
T PF13874_consen   92 LRKQEILRNRGY--ALSPEEEELRKRLEALEAQLN-APAQLKGRLNELWAQLR  141 (141)
T ss_dssp             HHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHhC
Confidence            356777777755  599999999999999999999 99999999999999886

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.99  E-value=0.56  Score=43.53  Aligned_cols=86  Identities=27%  Similarity=0.344  Sum_probs=67.7

Q ss_pred             CCCCC-CCchHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHH
Q 033340           11 GCRLP-LMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQT   89 (121)
Q Consensus        11 g~~~~-L~~eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQq   89 (121)
                      +.+.| |+..|.+.+.-|+.|..++.    +++.|++.+-..++-|..+...+.. .-..++.+.+.-...|+++|++|.
T Consensus       624 ~~~~P~LS~AEr~~~~EL~~~~~~l~----~l~~si~~lk~k~~~Q~~~i~~~~~-~~~~s~~L~~~Q~~~I~~iL~~~~  698 (717)
T PF10168_consen  624 NSQLPVLSEAEREFKKELERMKDQLQ----DLKASIEQLKKKLDYQQRQIESQKS-PKKKSIVLSESQKRTIKEILKQQG  698 (717)
T ss_pred             hccCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcccc-ccCCCccCCHHHHHHHHHHHHHHH
Confidence            55566 88999999999999999997    4889999987777666655443222 112467898999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 033340           90 EAIARLGNVLKR  101 (121)
Q Consensus        90 eaia~L~~Vlk~  101 (121)
                      +-|..+++-||+
T Consensus       699 ~~I~~~v~~ik~  710 (717)
T PF10168_consen  699 EEIDELVKQIKN  710 (717)
T ss_pred             HHHHHHHHHHHH
Confidence            999999877764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3t98_A	51	Nuclear pore complex protein NUP54; NUP62 complex,	99.75
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	81.57

>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}

Probab=99.75  E-value=9.5e-19  Score=112.40  Aligned_cols=49  Identities=20%  Similarity=0.363  Sum_probs=38.6

Q ss_pred             cccCCCCCccCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 033340           57 NSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEII  109 (121)
Q Consensus        57 ~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~iI  109 (121)
                      ++++.++.    .+|++||++++|||+||+|||+||++|++|||+|++||+||
T Consensus         3 ~~~a~~~~----~~y~lD~~~~~eik~~L~~QQ~g~~~Li~ivk~DleDL~iI   51 (51)
T 3t98_A            3 HFGAVKSE----EKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV   51 (51)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccc----chhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            44555553    67999999999999999999999999999999999999997

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=81.57  E-value=9.5  Score=25.44  Aligned_cols=82  Identities=12%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHHHHHHHHHHH
Q 033340           19 GEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNV   98 (121)
Q Consensus        19 eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~L~~V   98 (121)
                      +..+++.+|..+.....    .++.++.++-..+.+-...++.++.    .-..+|+....++....+.+...+..-...
T Consensus        11 ~~~~~~~~l~~L~~~~~----~l~~~i~~l~~~l~~l~~~g~~CPv----Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~   82 (112)
T 1l8d_A           11 KKTTIEEERNEITQRIG----ELKNKIGDLKTAIEELKKAKGKCPV----CGRELTDEHREELLSKYHLDLNNSKNTLAK   82 (112)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECTT----TCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCCCC----CCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888776665    5888888888888887654444432    456788877777777777777777666666


Q ss_pred             HhhhhHHHHH
Q 033340           99 LKRDIRDMEI  108 (121)
Q Consensus        99 lk~D~rDl~i  108 (121)
                      ++..+..++-
T Consensus        83 l~~~i~~l~~   92 (112)
T 1l8d_A           83 LIDRKSELER   92 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766666553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00