Citrus Sinensis ID: 033342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEccccEEcccccEEEEEEEEEcccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHccccccHHHHHHHHHHHHccEEEEEccccccccccccEEEEEEEEcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAkllcfpenfsyvgdkdadnikiaepldgpimqgYCSLARESSmwlslggfqekgsddarlcnTHVLlddagnirSTYRKIHL
Flexible Loop (DISEMBL)
MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHvllddagnirstyrkihl
Low Complexity Region (SEG)
MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL
Disordered region (IsUnstruct)
*******RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR********
Disordered Region (DISOPRED)
****HSV**AVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL
Disordered Region (DISEMBL)
********VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL
Disordered Region (DISPRO)
****HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q86X76	327	Nitrilase homolog 1 OS=Ho	no	no	0.933	0.345	0.465	1e-24
Q32LH4	328	Nitrilase homolog 1 OS=Bo	yes	no	0.933	0.344	0.431	1e-23
Q8VDK1	323	Nitrilase homolog 1 OS=Mu	yes	no	0.933	0.349	0.448	1e-23
Q7TQ94	292	Nitrilase homolog 1 OS=Ra	no	no	0.933	0.386	0.448	2e-23
O76464	460	Nitrilase and fragile his	yes	no	0.950	0.25	0.393	2e-18
O76463	440	Nitrilase and fragile his	yes	no	0.933	0.256	0.385	3e-17
Q557J5	291	Nitrilase homolog 1 OS=Di	yes	no	0.942	0.391	0.383	3e-17
Q11146	340	UPF0012 hydrolase Rv0480c	yes	no	0.909	0.323	0.347	1e-08
Q10166	322	UPF0012 hydrolase C26A3.1	yes	no	0.942	0.354	0.285	1e-07
Q5R4L6	275	Omega-amidase NIT2 OS=Pon	no	no	0.909	0.4	0.344	9e-07

>sp|Q86X76|NIT1_HUMAN Nitrilase homolog 1 OS=Homo sapiens GN=NIT1 PE=1 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 73/116 (62%), Gaps = 3/116 (2%)

Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
           VAV Q+TS  D   NF TC+ LV+EAA  GA L   PE F ++    A+ + ++EPL G 
Sbjct: 49  VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGK 108

Query: 69  IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
           +++ Y  LARE  +WLSLGGF E+G D     ++ N HVLL+  G + +TYRK HL
Sbjct: 109 LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHL 164

Plays a role in cell growth and apoptosis: loss of expression promotes cell growth and resistance to DNA damage stress. Has tumor suppressor properties that enhances the apoptotic responsiveness in cancer cells; this effect is additive to the tumor suppressor activity of FHIT. It is also a negative regulator of primary T-cells. Has apparently no omega-amidase activity such as NIT2.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: -EC: .EC: -

>sp|Q32LH4|NIT1_BOVIN Nitrilase homolog 1 OS=Bos taurus GN=NIT1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 3/116 (2%)

Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
           VAV Q+TS  D   NF TC+ L++EAA  GA L   PE F ++     +  +++EPL G 
Sbjct: 50  VAVCQVTSTPDKEQNFKTCAELIREAARLGACLAFLPEAFDFIARDPEETRRLSEPLSGN 109

Query: 69  IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
           +++ Y  LARE  +WLSLGGF E+G D     ++ N HV++++ G++ +TYRK HL
Sbjct: 110 LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVIMNNMGSVVATYRKTHL 165

Plays a role in cell growth and apoptosis. Has tumor suppressor properties that enhances the apoptotic responsiveness in cancer cells. it is also a negative regulator of primary T-cells. Has apparently no omega-amidase activity such as NIT2.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q8VDK1|NIT1_MOUSE Nitrilase homolog 1 OS=Mus musculus GN=Nit1 PE=2 SV=2

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 3/116 (2%)

Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
           VAV Q+TS  +   NF TC+ LV+EAA  GA L   PE F ++    A+ + ++EPL+G 
Sbjct: 45  VAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNGD 104

Query: 69  IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
           ++  Y  LARE  +WLSLGGF E+G D   + ++ N HVLL+  G++ ++YRK HL
Sbjct: 105 LLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHL 160

Plays a role in cell growth and apoptosis: loss of expression promotes cell growth, resistance to DNA damage stress and increased incidence to NMBA-induced tumors. Has tumor suppressor properties that enhances the apoptotic responsiveness in cancer cells; this effect is additive to the tumor suppressor activity of FHIT. It is also a negative regulator of primary T-cells. Has apparently no omega-amidase activity such as NIT2.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q7TQ94|NIT1_RAT Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 3/116 (2%)

Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
           VAV Q+TS  +   NF TC+ LV+EA   GA L   PE F ++    A+ + ++EPLDG 
Sbjct: 14  VAVCQVTSTPNKQENFKTCAELVQEATRLGACLAFLPEAFDFIARNPAETLLLSEPLDGD 73

Query: 69  IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
           ++  Y  LARE  +WLSLGGF E+G D     ++ N HVLL+  G++ ++YRK HL
Sbjct: 74  LLGQYSQLARECGIWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGSVVASYRKTHL 129

Plays a role in cell growth and apoptosis: loss of expression promotes cell growth and resistance to DNA damage stress. Has tumor suppressor properties that enhances the apoptotic responsiveness in cancer cells; this effect is additive to the tumor suppressor activity of FHIT. It is also a negative regulator of primary T-cells. Has apparently no omega-amidase activity such as NIT2.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|O76464|NFT1_DROME Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 70/117 (59%), Gaps = 2/117 (1%)

Query: 5   HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP 64
            S  +AV QM S +D AAN +    LV  A S  A +L  PE   +VG+     I+++E 
Sbjct: 31  QSATIAVGQMRSTSDKAANLSQVIELVDRAKSQNACMLFLPECCDFVGESRTQTIELSEG 90

Query: 65  LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           LDG +M  Y  LA+ + +W+SLGG  E+  +D ++ N HVLL++ G + + YRK+H+
Sbjct: 91  LDGELMAQYRELAKCNKIWISLGGVHER--NDQKIFNAHVLLNEKGELAAVYRKLHM 145

Cleaves A-5'-PPP-5'A to yield AMP and ADP.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|O76463|NFT1_CAEEL Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
           +AV QMTS NDL  NF     +++ A     +++  PE F ++G    + I +A   D  
Sbjct: 17  IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCE 76

Query: 69  IMQGYCSLARESSMWLSLGGFQEK-GSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            M+ Y  LAR+ ++WLSLGG   K  SD A   NTH+++D  G  R+ Y K+HL
Sbjct: 77  YMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHL 130

Cleaves A-5'-PPP-5'A to yield AMP and ADP.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q557J5|NIT1_DICDI Nitrilase homolog 1 OS=Dictyostelium discoideum GN=nit1-1 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 6/120 (5%)

Query: 8   RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYV--GDKDADNIKIAEPL 65
           R+ + Q+TS N+   NF  C  ++++A      L C PE F+++  G    ++   AE L
Sbjct: 14  RIGLGQITSTNNKEDNFRKCKEMIEKAVENKVNLFCLPECFAFISGGIHQFESRDNAEYL 73

Query: 66  D--GPIMQGYCSLARESSMWLSLGGFQEKGSDDAR--LCNTHVLLDDAGNIRSTYRKIHL 121
           D  G I++ Y  LA+++++WLSLGGF EK  DD    + NTH+++D  G I   YRK+HL
Sbjct: 74  DQKGGIIERYKDLAKQNNIWLSLGGFHEKILDDPNDMIYNTHLIIDSNGVIVCEYRKMHL 133

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q11146|Y480_MYCTU UPF0012 hydrolase Rv0480c/MT0498 OS=Mycobacterium tuberculosis GN=Rv0480c PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 8/118 (6%)

Query: 7   VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPE-NFSYVGDKDADNIKIAEPL 65
           +R+A+AQ+ S  D AAN     +   EAA+AGA+L+ FPE     +G       ++AEP+
Sbjct: 61  MRIALAQIRSGTDPAANLQLVGKYAGEAATAGAQLVVFPEATMCRLG---VPLRQVAEPV 117

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA--GNIRSTYRKIHL 121
           DGP   G   +A E+ + +  G F   G  D R+ NT +           + Y KIHL
Sbjct: 118 DGPWANGVRRIATEAGITVIAGMFTPTG--DGRVTNTLIAAGPGTPNQPDAHYHKIHL 173

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q10166|YAUB_SCHPO UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26A3.11 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 5   HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP 64
            + R+ + Q+ +  D + N       V EAA  G+ ++  PE F+        N + AEP
Sbjct: 42  RAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFN-QYAEP 100

Query: 65  LD--GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           ++   P  Q   S+A+++  +L  G   E+   D +L NT ++ D +G + + +RKIHL
Sbjct: 101 IEESSPSYQALSSMAKDTKTYLFGGSIPER--KDGKLYNTAMVFDPSGKLIAVHRKIHL 157

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q5R4L6|NIT2_PONAB Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 6   SVRVAVAQM--TSINDLAANFATCSRLVKEAASAGAKLLCFPENF-SYVGDKDADNIKIA 62
           S R+A+ Q+  +SIN  + N       ++EAA+ GAK++  PE F S  G K     + A
Sbjct: 3   SFRLALIQLQISSIN--SDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFP--EYA 58

Query: 63  EPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           E + G   Q    +A+E S++L  G   E+  D  +L NT  +    G + + YRKIHL
Sbjct: 59  EKIPGESTQKLSEVAKECSIYLIGGSIPEE--DAGKLYNTCAVFGPDGTLLAKYRKIHL 115

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
359486314	282	PREDICTED: nitrilase homolog 1-like [Vit	0.975	0.418	0.805	2e-51
255568181	333	nitrilase and fragile histidine triad fu	0.991	0.360	0.783	1e-49
224098154	271	predicted protein [Populus trichocarpa]	0.975	0.435	0.762	6e-49
224112919	293	predicted protein [Populus trichocarpa]	0.975	0.402	0.754	1e-48
363807860	283	uncharacterized protein LOC100781131 [Gl	0.975	0.416	0.771	2e-48
357445021	283	Nitrilase-like protein [Medicago truncat	0.966	0.413	0.777	3e-48
388500566	317	unknown [Lotus japonicus]	1.0	0.381	0.743	4e-48
297813341	307	hypothetical protein ARALYDRAFT_911156 [	0.950	0.374	0.741	3e-47
18413157	307	Nitrilase/cyanide hydratase and apolipop	0.950	0.374	0.732	9e-47
7267521	316	nitrilase 1 like protein [Arabidopsis th	0.950	0.363	0.732	1e-46

>gi|359486314|ref|XP_002275667.2| PREDICTED: nitrilase homolog 1-like [Vitis vinifera] gi|297736451|emb|CBI25322.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 104/118 (88%)

Query: 4   AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE 63
           A+SVRVA  QMTS+NDLAANFATCSRLVKEA SAGAK +CFPENFS+V  KD +++ IAE
Sbjct: 2   ANSVRVAAVQMTSVNDLAANFATCSRLVKEAVSAGAKFICFPENFSFVATKDGESLTIAE 61

Query: 64  PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           PLDGPIMQGY SLARES +WLSLGGFQEKG DDA LCNTHVL+DD GNIRS YRKIHL
Sbjct: 62  PLDGPIMQGYRSLARESKIWLSLGGFQEKGQDDAHLCNTHVLIDDTGNIRSKYRKIHL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568181|ref|XP_002525066.1| nitrilase and fragile histidine triad fusion protein, putative [Ricinus communis] gi|223535647|gb|EEF37313.1| nitrilase and fragile histidine triad fusion protein, putative [Ricinus communis]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%)

Query: 2   AGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI 61
           A + +VRVA AQMTSIND+AANFATCSRLVKEAA+AGAKLLC PE+FS++G +D D+IKI
Sbjct: 37  AASSTVRVAAAQMTSINDVAANFATCSRLVKEAAAAGAKLLCLPESFSFIGARDGDSIKI 96

Query: 62  AEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           AEPLDGPIMQ YCSLARES +WLSLGGFQE+GSDDA L NTHV++DD GNIRSTY KI L
Sbjct: 97  AEPLDGPIMQQYCSLARESDIWLSLGGFQERGSDDAHLRNTHVIIDDCGNIRSTYPKIFL 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098154|ref|XP_002311127.1| predicted protein [Populus trichocarpa] gi|222850947|gb|EEE88494.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 106/118 (89%)

Query: 4   AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE 63
           ++SVRVA  QMTSINDLAANFATCSRLVKEA +AGAKL+CFPE+FS++  KD +++K+AE
Sbjct: 3   SNSVRVAAVQMTSINDLAANFATCSRLVKEAVAAGAKLVCFPESFSFIAAKDGESVKLAE 62

Query: 64  PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           PLDGPIMQ YC LARES +WLSLGGFQEKGSDDA L NTHV++DD+GNIRS+Y KIHL
Sbjct: 63  PLDGPIMQRYCLLARESGIWLSLGGFQEKGSDDAHLRNTHVIIDDSGNIRSSYSKIHL 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112919|ref|XP_002316330.1| predicted protein [Populus trichocarpa] gi|222865370|gb|EEF02501.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 105/118 (88%)

Query: 4   AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE 63
           ++SVRVA AQMTSINDLAANFATCSRLVKEA + GAKL+CFPE+FS++ DKD +++ IAE
Sbjct: 20  SNSVRVAAAQMTSINDLAANFATCSRLVKEAVAEGAKLVCFPESFSFIADKDGESVNIAE 79

Query: 64  PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           PLDGPIMQ YCSLARES +WLSLGGFQE+GSDD  L NTHV++DD G+IRS+Y KIHL
Sbjct: 80  PLDGPIMQQYCSLARESGIWLSLGGFQERGSDDEHLRNTHVIIDDCGSIRSSYSKIHL 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807860|ref|NP_001242187.1| uncharacterized protein LOC100781131 [Glycine max] gi|255647154|gb|ACU24045.1| unknown [Glycine max]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 104/118 (88%)

Query: 4   AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE 63
           +++VRVA AQMTSI+DLAAN ATCSRL+KEAASAGAKLLCFPE FSYVG KD D++++AE
Sbjct: 3   SNAVRVAAAQMTSISDLAANLATCSRLIKEAASAGAKLLCFPEAFSYVGTKDGDSVRVAE 62

Query: 64  PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           PLDGPIM  YCSLARESS+WLSLGGFQEKGSD  RL NTHV++DD G I S+Y KIHL
Sbjct: 63  PLDGPIMSHYCSLARESSIWLSLGGFQEKGSDPQRLSNTHVIVDDTGKIISSYSKIHL 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445021|ref|XP_003592788.1| Nitrilase-like protein [Medicago truncatula] gi|355481836|gb|AES63039.1| Nitrilase-like protein [Medicago truncatula]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 103/117 (88%)

Query: 5   HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP 64
           +SVRVA AQMTSI DLA+NF+TCSRLVKEAASAGAKLLCFPE FS+VG KD D++ IA+P
Sbjct: 4   NSVRVAAAQMTSITDLASNFSTCSRLVKEAASAGAKLLCFPEAFSFVGAKDGDSVSIAQP 63

Query: 65  LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           LDGPIM  YCSLARESS+WLSLGGFQEKGSD   L NTHV++DD G I++TYRKIHL
Sbjct: 64  LDGPIMDQYCSLARESSIWLSLGGFQEKGSDPRHLFNTHVVVDDTGKIQTTYRKIHL 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500566|gb|AFK38349.1| unknown [Lotus japonicus]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 103/121 (85%)

Query: 1   MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIK 60
           +   +SVRVA AQMTSINDLAANF TCSRLVKEAA AGAKLLCFPE FS+VG KD D+++
Sbjct: 34  IMATNSVRVAAAQMTSINDLAANFTTCSRLVKEAALAGAKLLCFPEAFSFVGAKDGDSVR 93

Query: 61  IAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIH 120
           +AEPLDGPIM+ YCSLAR+SS+WLSLGGFQEKG D   L NTHV++DD G I STY+KIH
Sbjct: 94  VAEPLDGPIMEKYCSLARDSSIWLSLGGFQEKGPDPEHLFNTHVIVDDTGKIISTYKKIH 153

Query: 121 L 121
           L
Sbjct: 154 L 154

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813341|ref|XP_002874554.1| hypothetical protein ARALYDRAFT_911156 [Arabidopsis lyrata subsp. lyrata] gi|297320391|gb|EFH50813.1| hypothetical protein ARALYDRAFT_911156 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 104/116 (89%), Gaps = 1/116 (0%)

Query: 6   SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPL 65
           +VRVA AQMTS+NDL  NFATCSRLV+EAA AGAKL+CFPENFS+VGDK+ +++KIAEPL
Sbjct: 36  TVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICFPENFSFVGDKEGESVKIAEPL 95

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           DGP+MQ YCSLAR+S++WLSLGGFQE+  DD  LCNTHV++DDAG IR TY+K+HL
Sbjct: 96  DGPVMQRYCSLARDSNIWLSLGGFQER-FDDTHLCNTHVVIDDAGMIRDTYQKMHL 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413157|ref|NP_567340.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Arabidopsis thaliana] gi|13926307|gb|AAK49620.1|AF372904_1 AT4g08790/T32A17_100 [Arabidopsis thaliana] gi|22137058|gb|AAM91374.1| At4g08790/T32A17_100 [Arabidopsis thaliana] gi|332657278|gb|AEE82678.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Arabidopsis thaliana]

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 104/116 (89%), Gaps = 1/116 (0%)

Query: 6   SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPL 65
           +VRVA AQMTS+NDL  NFATCSRLV+EAA AGAKL+CFPENFS+VGDK+ +++KIAEPL
Sbjct: 36  TVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICFPENFSFVGDKEGESVKIAEPL 95

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           DGP+M+ YCSLAR+S++WLSLGGFQE+  DD  LCNTHV++DDAG IR TY+K+HL
Sbjct: 96  DGPVMERYCSLARDSNIWLSLGGFQER-FDDTHLCNTHVVIDDAGMIRDTYQKMHL 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267521|emb|CAB78004.1| nitrilase 1 like protein [Arabidopsis thaliana] gi|7321068|emb|CAB82115.1| nitrilase 1 like protein [Arabidopsis thaliana]

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 104/116 (89%), Gaps = 1/116 (0%)

Query: 6   SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPL 65
           +VRVA AQMTS+NDL  NFATCSRLV+EAA AGAKL+CFPENFS+VGDK+ +++KIAEPL
Sbjct: 36  TVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICFPENFSFVGDKEGESVKIAEPL 95

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           DGP+M+ YCSLAR+S++WLSLGGFQE+  DD  LCNTHV++DDAG IR TY+K+HL
Sbjct: 96  DGPVMERYCSLARDSNIWLSLGGFQER-FDDTHLCNTHVVIDDAGMIRDTYQKMHL 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2138208	307	AT4G08790 "AT4G08790" [Arabido	0.950	0.374	0.732	1.9e-44
ZFIN|ZDB-GENE-040912-65	316	nit1 "nitrilase 1" [Danio reri	0.958	0.367	0.458	1.1e-23
UNIPROTKB|F1S193	312	NIT1 "Uncharacterized protein"	0.933	0.362	0.456	1.4e-23
UNIPROTKB|F1S194	332	NIT1 "Uncharacterized protein"	0.933	0.340	0.456	1.4e-23
UNIPROTKB|B1AQP4	243	NIT1 "Nitrilase homolog 1" [Ho	0.933	0.465	0.465	2.9e-23
UNIPROTKB|Q86X76	327	NIT1 "Nitrilase homolog 1" [Ho	0.933	0.345	0.465	2.9e-23
UNIPROTKB|F1PLS8	549	NIT1 "Uncharacterized protein"	0.933	0.205	0.465	9.9e-23
UNIPROTKB|F1N1W5	328	NIT1 "Nitrilase homolog 1" [Bo	0.933	0.344	0.439	1.3e-22
UNIPROTKB|Q32LH4	328	NIT1 "Nitrilase homolog 1" [Bo	0.933	0.344	0.431	2.1e-22
MGI|MGI:1350916	323	Nit1 "nitrilase 1" [Mus muscul	0.933	0.349	0.448	2.1e-22

TAIR|locus:2138208 AT4G08790 "AT4G08790" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 85/116 (73%), Positives = 104/116 (89%)

Query:     6 SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPL 65
             +VRVA AQMTS+NDL  NFATCSRLV+EAA AGAKL+CFPENFS+VGDK+ +++KIAEPL
Sbjct:    36 TVRVAAAQMTSVNDLMTNFATCSRLVQEAALAGAKLICFPENFSFVGDKEGESVKIAEPL 95

Query:    66 DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
             DGP+M+ YCSLAR+S++WLSLGGFQE+  DD  LCNTHV++DDAG IR TY+K+HL
Sbjct:    96 DGPVMERYCSLARDSNIWLSLGGFQER-FDDTHLCNTHVVIDDAGMIRDTYQKMHL 150

GO:0000257 "nitrilase activity" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009536 "plastid" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

ZFIN|ZDB-GENE-040912-65 nit1 "nitrilase 1" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 55/120 (45%), Positives = 77/120 (64%)

Query:     6 SVRVA-VAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP 64
             SV VA V QMT+  D  ANF TC+RLV++A   GA ++  PE F Y+G    + ++++E 
Sbjct:    32 SVPVAAVCQMTATPDKEANFRTCTRLVEQAKVGGASMVFLPEGFDYIGSSREETLQLSES 91

Query:    65 LDGPIMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             LDG  +  Y  LAR+  +WLSLGGF E+G D   D R+ N+H++++  G I S YRK HL
Sbjct:    92 LDGETISRYTHLARKLDVWLSLGGFHEQGHDWKTDRRIYNSHIIINGQGEIVSVYRKTHL 151

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1S193 NIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/116 (45%), Positives = 75/116 (64%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ LV+EAA  GA L   PE F ++G    + ++++EPL G 
Sbjct:    34 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGK 93

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             ++  Y  LARE  +WLSLGGF E+G D     ++ N HV+L++ G++ +TYRK HL
Sbjct:    94 LLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHL 149

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|F1S194 NIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/116 (45%), Positives = 75/116 (64%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ LV+EAA  GA L   PE F ++G    + ++++EPL G 
Sbjct:    54 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGK 113

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             ++  Y  LARE  +WLSLGGF E+G D     ++ N HV+L++ G++ +TYRK HL
Sbjct:   114 LLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHL 169

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|B1AQP4 NIT1 "Nitrilase homolog 1" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/116 (46%), Positives = 73/116 (62%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ LV+EAA  GA L   PE F ++    A+ + ++EPL G 
Sbjct:    49 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGK 108

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             +++ Y  LARE  +WLSLGGF E+G D     ++ N HVLL+  G + +TYRK HL
Sbjct:   109 LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHL 164

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

UNIPROTKB|Q86X76 NIT1 "Nitrilase homolog 1" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/116 (46%), Positives = 73/116 (62%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ LV+EAA  GA L   PE F ++    A+ + ++EPL G 
Sbjct:    49 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGK 108

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             +++ Y  LARE  +WLSLGGF E+G D     ++ N HVLL+  G + +TYRK HL
Sbjct:   109 LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHL 164

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0000257 "nitrilase activity" evidence=TAS

UNIPROTKB|F1PLS8 NIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 270 (100.1 bits), Expect = 9.9e-23, P = 9.9e-23
 Identities = 54/116 (46%), Positives = 75/116 (64%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ LV+EAA  GA L   PE F ++    A+ ++++EPL G 
Sbjct:   271 VAVCQVTSTPDKQENFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLRLSEPLGGN 330

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             ++  Y  LARE  +WLSLGGF E+G D     ++ N HVLL++ G++ +TYRK HL
Sbjct:   331 LLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNNEGSVVATYRKTHL 386

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|F1N1W5 NIT1 "Nitrilase homolog 1" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/116 (43%), Positives = 74/116 (63%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ L++EAA  GA L   PE F ++     +  +++EPL G 
Sbjct:    50 VAVCQVTSTPDKEQNFKTCAELIREAARLGACLAFLPEAFDFIARDPEETRRLSEPLSGN 109

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             +++ Y  LARE  +WLSLGGF E+G D     ++ N HV+L++ G++ +TYRK HL
Sbjct:   110 LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNMGSVVATYRKTHL 165

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|Q32LH4 NIT1 "Nitrilase homolog 1" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 50/116 (43%), Positives = 74/116 (63%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  D   NF TC+ L++EAA  GA L   PE F ++     +  +++EPL G 
Sbjct:    50 VAVCQVTSTPDKEQNFKTCAELIREAARLGACLAFLPEAFDFIARDPEETRRLSEPLSGN 109

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             +++ Y  LARE  +WLSLGGF E+G D     ++ N HV++++ G++ +TYRK HL
Sbjct:   110 LLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVIMNNMGSVVATYRKTHL 165

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

MGI|MGI:1350916 Nit1 "nitrilase 1" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 52/116 (44%), Positives = 75/116 (64%)

Query:     9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
             VAV Q+TS  +   NF TC+ LV+EAA  GA L   PE F ++    A+ + ++EPL+G 
Sbjct:    45 VAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNGD 104

Query:    69 IMQGYCSLARESSMWLSLGGFQEKGSD---DARLCNTHVLLDDAGNIRSTYRKIHL 121
             ++  Y  LARE  +WLSLGGF E+G D   + ++ N HVLL+  G++ ++YRK HL
Sbjct:   105 LLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHL 160

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029495001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (282 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017570001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (371 aa)	•	•					•		0.575

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
PLN02798	286	PLN02798, PLN02798, nitrilase	4e-76
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	2e-45
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	4e-30
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	2e-25
pfam00795	172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	4e-25
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	1e-21
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	2e-19
cd07580	268	cd07580, nitrilase_2, Uncharacterized subgroup of	8e-19
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	3e-18
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	3e-17
cd07579	279	cd07579, nitrilase_1_R2, Second nitrilase domain o	2e-15
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	3e-15
TIGR03381	279	TIGR03381, agmatine_aguB, N-carbamoylputrescine am	8e-15
cd07573	284	cd07573, CPA, N-carbamoylputrescine amidohydrolase	2e-14
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	4e-12
cd07569	302	cd07569, DCase, N-carbamyl-D-amino acid amidohydro	1e-11
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	3e-10
cd07574	280	cd07574, nitrilase_Rim1_like, Uncharacterized subg	2e-07
cd07568	287	cd07568, ML_beta-AS_like, mammalian-like beta-alan	2e-07
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	7e-07
cd07578	258	cd07578, nitrilase_1_R1, First nitrilase domain of	1e-06
cd07577	259	cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642	4e-06
PLN02504	346	PLN02504, PLN02504, nitrilase	5e-06
cd07586	269	cd07586, nitrilase_8, Uncharacterized subgroup of	1e-05
cd07570	261	cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe	1e-05
cd07571	270	cd07571, ALP_N-acyl_transferase, Apolipoprotein N-	2e-05
PRK13981	540	PRK13981, PRK13981, NAD synthetase; Provisional	8e-05
PRK02628	679	PRK02628, nadE, NAD synthetase; Reviewed	4e-04
cd07565	291	cd07565, aliphatic_amidase, aliphatic amidases (cl	5e-04
cd07567	299	cd07567, biotinidase_like, biotinidase and vanins	0.002
cd07566	295	cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t	0.002

>gnl|CDD|215428 PLN02798, PLN02798, nitrilase

 Score =  226 bits (578), Expect = 4e-76
 Identities = 91/120 (75%), Positives = 102/120 (85%)

Query: 2   AGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI 61
               SVRVAVAQMTS NDLAANFATCSRL KEAA+AGAKLL  PE FS++GDKD +++ I
Sbjct: 6   TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAI 65

Query: 62  AEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           AEPLDGPIMQ Y SLARES +WLSLGGFQEKG DD+ L NTHVL+DD+G IRS+YRKIHL
Sbjct: 66  AEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHL 125

Length = 286

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score =  147 bits (374), Expect = 2e-45
 Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 8   RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP-LD 66
           RVA+ QMTS  D  AN A    L++EAA+ GAKL+  PE F+Y G  DA  + +AE   D
Sbjct: 1   RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD 60

Query: 67  GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           GP +Q    LA+E  +WL  G   E+  DD ++ NT ++ D  G + + YRKIHL
Sbjct: 61  GPTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHL 115

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  107 bits (270), Expect = 4e-30
 Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFS-YVGDKDADNIKIAEPLDG 67
           VA+AQ  S  D   N     RL+ EAA+AGA L+ FPE      GD   D  ++AEPLDG
Sbjct: 1   VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDG 60

Query: 68  PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           P +     LARE  + + + G  E    D R+ NT V++   G I + YRKIHL
Sbjct: 61  PFVSALARLARELGITV-VAGMFEPA-GDGRVYNTLVVVGPDGEIIAVYRKIHL 112

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score = 95.9 bits (239), Expect = 2e-25
 Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 6/116 (5%)

Query: 9   VAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPENFS--YVGDKDADNIKIAEPL 65
           +A  Q+   I D+ AN A   RL+KEAA  GA L+  PE F   Y  +   +++ +AE L
Sbjct: 1   IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEEL 60

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           DGP ++    LA+E  +++ + G  EK  D  +L NT V++D  G I   YRKIHL
Sbjct: 61  DGPTLEALAELAKELGIYI-VAGIAEK--DGDKLYNTAVVIDPDGEIIGKYRKIHL 113

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase

 Score = 92.7 bits (231), Expect = 4e-25
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 8   RVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPENFSYV-GDKDADNIKIAEPL 65
           +VA+ Q+  S  DL AN      L++EAA  GA L+  PE F         + +++AE +
Sbjct: 1   KVALVQLPPSAFDLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHGATEYLELAEAI 60

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            G  +Q   +LAR++ + +  G  ++   D   L NT VL+D  G +   YRK HL
Sbjct: 61  PGETLQFLSALARKNGITVVAGIPEK---DGGGLYNTLVLIDPDGELLGKYRKRHL 113

This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins. Length = 172

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 85.7 bits (213), Expect = 1e-21
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 8   RVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLD 66
           ++A+ Q+     D  AN      L++EAA+AGA L+  PE ++     D     +A+   
Sbjct: 1   KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYE-LADEDG 59

Query: 67  GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           G  +     LA++  + +  G   EK     +L NT  ++D  G + +TYRKIHL
Sbjct: 60  GETVSFLSELAKKHGVNIVAGSVAEKEGG--KLYNTAYVIDPDGELIATYRKIHL 112

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 79.7 bits (197), Expect = 2e-19
 Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query: 8   RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFS--YVGDKDADNI-KIAE 63
           +VA+ QM S+  D+ AN    + L KEAA+ GA L+CFPE  +  Y  D     + +++E
Sbjct: 1   KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE 60

Query: 64  PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           P+DGP ++ +  LA+E  +++ + GF EKG    ++ N+ V++D  G     YRKIHL
Sbjct: 61  PIDGPTVRLFSELAKELGVYI-VCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHL 117

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 78.5 bits (194), Expect = 8e-19
 Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 8/118 (6%)

Query: 8   RVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPE--NFSYVGDKDADNIKIAEP 64
           RVA  Q    + DL AN A    L++EAA AGA L+  PE  N  YV +   +   +AE 
Sbjct: 1   RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEE 60

Query: 65  L-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           + DG   + +  LA E  +++ + GF E+  D  RL N+ VL+   G I  TYRK HL
Sbjct: 61  VPDGASTRAWAELAAELGLYI-VAGFAER--DGDRLYNSAVLVGPDGVI-GTYRKAHL 114

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 268

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score = 77.1 bits (190), Expect = 3e-18
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 6   SVRVAVAQMTSIN-DLAANFATCSRLVKEAASAGAKLLCFPENFS--YVGDKDADNIKIA 62
            +RVA AQM     D A N A   RL++EAA+ GA L+ FPE F   Y  + D    + A
Sbjct: 2   MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAA 61

Query: 63  EPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
                  ++   +LA E  + +  G   E+   +    N   L+D  G I   YRK+HL
Sbjct: 62  AEAGEETLEFLAALAEEGGVIIVGGPLPER---EKLYNNA-ALIDPDGEILGKYRKLHL 116

Length = 274

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score = 74.2 bits (183), Expect = 3e-17
 Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 8   RVAVAQMTSIN-DLAANFATCSRLVKEAASAGAKLLCFPENF--SYVGDKDADNIKIAEP 64
           R+A+ Q  + + D+AAN A        AA+AGA LL FPE F   Y         ++AEP
Sbjct: 1   RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAV--ARLAEP 58

Query: 65  LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            DGP +Q   ++AR   + + +G + E+      + N  VL+D+ G + + YRK HL
Sbjct: 59  ADGPALQALRAIARRHGIAIVVG-YPER--AGGAVYNAAVLIDEDGTVLANYRKTHL 112

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 8   RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVG-DKDADNIKIAEPLD 66
           R+AVAQ     D+A N AT  RL  EA + GA+L+ FPE  +  G D  A     AE   
Sbjct: 1   RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPE-LALTGLDDPASE---AESDT 56

Query: 67  GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           GP +     LAR   ++L + GF E   D   L N+ VL+   G +  TYRK HL
Sbjct: 57  GPAVSALRRLARRLRLYL-VAGFAEA--DGDGLYNSAVLVGPEGLV-GTYRKTHL 107

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 279

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 13/119 (10%)

Query: 8   RVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPE----NFSYVGDKDADNIKIA 62
           R+A+ Q  + + D A N A  +R  ++AA+ GA+L+CFPE     +++V        + A
Sbjct: 1   RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALS----REA 56

Query: 63  EPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           E  DGP  Q    LAR   + + L G  EK  D  R  NT+++    G +   YRK+HL
Sbjct: 57  EVPDGPSTQALSDLARRYGLTI-LAGLIEKAGD--RPYNTYLVCLPDGLV-HRYRKLHL 111

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 7/119 (5%)

Query: 7   VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFS---YVGDKDADNIKIAE 63
           V VA  QM   +D+  N A   RLV+EAA+ GA+++  PE F    +  D+D D   +A+
Sbjct: 1   VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQ 60

Query: 64  PLDG-PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           P++G P ++ + +LA+E  + + +  F++ G  +A   N+  ++D  G++   YRK H+
Sbjct: 61  PVEGHPAIKRFQALAKELGVVIPVSFFEKAG--NAYY-NSLAMIDADGSVLGVYRKSHI 116

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one [Central intermediary metabolism, Polyamine biosynthesis]. Length = 279

>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%)

Query: 7   VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSY---VGDKDADNIKIAE 63
           V VA+ QM    D  AN A    LV+EAA+ GA+++C  E F       ++D D   +AE
Sbjct: 1   VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAE 60

Query: 64  PL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIH 120
           P   GP    + +LA+E  + + +  F+++G+      N+ V++D  G++   YRK+H
Sbjct: 61  PPIPGPTTARFQALAKELGVVIPVSLFEKRGN--GLYYNSAVVIDADGSLLGVYRKMH 116

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer. Length = 284

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 17/127 (13%)

Query: 7   VRVAVAQMTSIN-DLAANFATCSRLVKEAASAGAKLLCFPENF-------SYVGDKDADN 58
           V+VA  Q   +  DLAA      RL++EAA+ GA+L+ FPE F        + G      
Sbjct: 1   VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGR 60

Query: 59  ------IKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112
                  + +  +DGP ++     ARE+ +++ L G  E+  D   L NT +L+D  G +
Sbjct: 61  ELFARYYENSVEVDGPELERLAEAARENGIYVVL-GVSER--DGGTLYNTQLLIDPDGEL 117

Query: 113 RSTYRKI 119
              +RK+
Sbjct: 118 LGKHRKL 124

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 7   VRVAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE----NF--SYVGDKDAD 57
           V +A AQM  I       +  +RL+   +EAAS GA+L+ FPE     F   +    +A+
Sbjct: 4   VILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAE 63

Query: 58  NIKIAEP-LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARL--CNTHVLLDDAGNIRS 114
                E  +  P  Q     A+E  +   LG + E   D       NT +L+D +G I  
Sbjct: 64  LDSFFETEMPNPETQPLFDRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVG 122

Query: 115 TYRKIHL 121
            YRK+HL
Sbjct: 123 KYRKVHL 129

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers. Length = 302

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 1   MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFS---YVGDKDAD 57
           M     V VA  Q    +D AAN     RLV+EA + GA ++   E F    +   +  D
Sbjct: 1   MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQRED 60

Query: 58  NIKIAEPLDG-PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116
             + A+P +G P +     LA+E  + + +  F+E  +      N+  ++D  G     Y
Sbjct: 61  FFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANN---AHYNSIAIIDADGTDLGLY 117

Query: 117 RKIHL 121
           RK H+
Sbjct: 118 RKSHI 122

Length = 296

>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 7   VRVAVAQ--MTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYV--------GDKDA 56
           VRVA AQ  +          A     V EAA  GA LL FPE F+           D   
Sbjct: 1   VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLD 60

Query: 57  DNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116
           + I+    L    +  +  LAR+  + +  G    +   D RL N   L    G I    
Sbjct: 61  EAIRALAALTPDYVALFSELARKYGINIIAGSMPVRE--DGRLYNRAYLFGPDGTI-GHQ 117

Query: 117 RKIHL 121
            K+H+
Sbjct: 118 DKLHM 122

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 280

>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 30  LVKEAASAGAKLLCFPENFS---YVGDKDADNIKIAEPL-DGPIMQGYCSLARESSMWLS 85
           +++EAA AGA+++C  E F    +  ++D    + AE + +GP  + + +LA+E +M L 
Sbjct: 35  MIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLI 94

Query: 86  LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           L  ++++      L NT  ++D  G     YRK H+
Sbjct: 95  LPIYEKEQG--GTLYNTAAVIDADGTYLGKYRKNHI 128

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 287

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 17/127 (13%)

Query: 7   VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPEN-------FSYVGD---KD 55
           VR A  Q++ +   L    A     + EAA  G +L+ FPE        FS+V       
Sbjct: 3   VRAAAVQISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETFVPYYPYFSFVQPPVLMG 62

Query: 56  ADNIKIAEP---LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112
            +++++ E    + GP+       ARE  M + L G  E+  D   L NT ++ D  G +
Sbjct: 63  KEHLRLYEQAVVVPGPVTDAVAEAAREHGMVVVL-GVNER--DHGSLYNTQLIFDADGEL 119

Query: 113 RSTYRKI 119
               RKI
Sbjct: 120 VLKRRKI 126

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 7   VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIA--- 62
            + A  Q      +   N      L +EAA AGA+L+  PE  +  G    D  +IA   
Sbjct: 1   YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPE-MATTGYCWYDRAEIAPFV 59

Query: 63  EPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIH 120
           EP+ GP    +  LARE   ++ + G  E  S      N+ VL+  +G I   +RK H
Sbjct: 60  EPIPGPTTARFAELAREHDCYIVV-GLPEVDSRSGIYYNSAVLIGPSGVI-GRHRKTH 115

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 8   RVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPENFS--YVGDKDADNIKIAEP 64
           +V   Q      ++  N     ++        A L+  PE F+  Y      +   +AE 
Sbjct: 1   KVGYVQFNPKFGEVEKNL---KKVESLIKGVEADLIVLPELFNTGYAFTSKEEVASLAES 57

Query: 65  L-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           + DGP  +    LARE+  ++ + G  E+  D  +  N+ V++   G I   YRK HL
Sbjct: 58  IPDGPTTRFLQELARETGAYI-VAGLPER--DGDKFYNSAVVVGPEGYI-GIYRKTHL 111

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 259

>gnl|CDD|178120 PLN02504, PLN02504, nitrilase

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 25/98 (25%)

Query: 2  AGAHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIK 60
          A + +VR  V Q +++  D  A      RL+ EAA+ G++L+ FPE F  +G        
Sbjct: 20 ASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAF--IG-------- 69

Query: 61 IAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR 98
                     GY    R S+  L++G    KG +D R
Sbjct: 70 -----------GY---PRGSTFGLAIGDRSPKGREDFR 93

Length = 346

>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 8   RVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPE---NFSYVGDKDADNIKIAE 63
           RVA+AQ+   + D+  N      +++ A   GA L+ FPE       +GD   +   +A 
Sbjct: 1   RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYE---VAM 57

Query: 64  PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
             D P +Q     +    + +  G  +E    D R  N+   L+D G +   +RK++L
Sbjct: 58  HADDPRLQALAEASGG--ICVVFGFVEE--GRDGRFYNSAAYLED-GRVVHVHRKVYL 110

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 269

>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 8  RVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
          R+A+AQ+  ++ DL  N       ++EA + GA L+ FPE
Sbjct: 1  RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPE 40

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to classes 7 and 8. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase forms a homooctamer. Length = 261

>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases)

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 31/124 (25%), Positives = 42/124 (33%), Gaps = 22/124 (17%)

Query: 7   VRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPEN-FSYVGDKDAD 57
           +RVA+ Q  +I            A       L +E A     L+ +PE    +   +D D
Sbjct: 1   LRVALVQ-GNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQRDPD 59

Query: 58  NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYR 117
                  L           AR     L L G   +     R  N+ +LLD  G I   Y 
Sbjct: 60  ---ALARLA--------RAARAVGAPL-LTGAPRREPGGGRYYNSALLLDPGGGILGRYD 107

Query: 118 KIHL 121
           K HL
Sbjct: 108 KHHL 111

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9. Length = 270

>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 33/130 (25%)

Query: 7   VRVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPENF-------------SYVG 52
           +R+A+AQ+   + D+A N A       EAA AGA LL FPE F             +++ 
Sbjct: 1   LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLA 60

Query: 53  DKDADNIKIAEPL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111
             +A   ++A     GP +               L G   +  +  +L N   LLD  G 
Sbjct: 61  ACEAALERLAAATAGGPAV---------------LVGHPWR--EGGKLYNAAALLDG-GE 102

Query: 112 IRSTYRKIHL 121
           + +TYRK  L
Sbjct: 103 VLATYRKQDL 112

Length = 540

>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 7  VRVAVA-QMTSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
          VRVA A     + D A N A    L + AA  G  L  FPE
Sbjct: 13 VRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPE 53

Length = 679

>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 22/129 (17%)

Query: 7   VRVAVAQ--MTSIN---DLAANFATCSRLVKEAASA--GAKLLCFPE----NFSYVGDKD 55
           V VAV Q  +  ++   ++  N    + +V+       G  L+ FPE       Y     
Sbjct: 1   VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTM 60

Query: 56  ADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ--EKGSDDARLC--NTHVLLDDAGN 111
            +    A  + GP    +    +E+ +W   G F   E+ + D      NT +++DD G 
Sbjct: 61  DE---TACTVPGPETDIFAEACKEAKVW---GVFSIMER-NPDHGKNPYNTAIIIDDQGE 113

Query: 112 IRSTYRKIH 120
           I   YRK+H
Sbjct: 114 IVLKYRKLH 122

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. HpAmiE , HpAmiF, and RAPc8 amidase, and PaAimE appear to be homohexameric enzymes, trimer of dimers. Length = 291

>gnl|CDD|143591 cd07567, biotinidase_like, biotinidase and vanins (class 4 nitrilases)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 27/129 (20%)

Query: 20  LAANFATCSRLVKEAASAGAKLLCFPE---------NFSY------VGDKDADNIKIAEP 64
           +  N      ++K AA  GA ++ FPE          F        V D + +     +P
Sbjct: 22  MEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDP 81

Query: 65  LD---GPIMQGYCSLARESSMWLSLG-GFQEKGSDDARLC--------NTHVLLDDAGNI 112
                  ++Q     ARE+S+++    G ++        C        NT+V+ D  G +
Sbjct: 82  DRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTL 141

Query: 113 RSTYRKIHL 121
            + YRK +L
Sbjct: 142 IARYRKYNL 150

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking free cysteamine are less susceptible to intestinal inflammation, and expression of vanin-1 and -3 is induced as part of the inflammatory-regenerative differentiation program of human epidermis. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 4. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 299

>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 26/131 (19%)

Query: 8   RVAVAQMTS-INDLAANF----ATCSRLVKEAASAGAKLLCFPE------NFSYVGDKDA 56
           R+A  Q+   I  +  N         +  K A      +L  PE      NF        
Sbjct: 1   RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNF-----HSL 55

Query: 57  DNIK--IAEPLDGPIMQGYCSLARESSMWLS---LGGFQEK-GSDDARLCNTHVLLDDAG 110
           ++IK  +     GP        ARE +   +   + G+ EK      +L N+ +++D  G
Sbjct: 56  EHIKPYLEPTTSGPS----FEWAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEG 111

Query: 111 NIRSTYRKIHL 121
            +   YRK  L
Sbjct: 112 EVVFNYRKSFL 122

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3. Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PLN02798	286	nitrilase	99.95
PLN02747	296	N-carbamolyputrescine amidase	99.95
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	99.95
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	99.95
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	99.94
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	99.94
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	99.94
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.94
PLN02504	346	nitrilase	99.94
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	99.94
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	99.94
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	99.93
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	99.93
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	99.93
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	99.93
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	99.93
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	99.93
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	99.93
PLN00202	405	beta-ureidopropionase	99.93
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	99.93
PRK13287	333	amiF formamidase; Provisional	99.92
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	99.92
PRK10438	256	C-N hydrolase family amidase; Provisional	99.92
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	99.92
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	99.92
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	99.92
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	99.92
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	99.92
PRK13286	345	amiE acylamide amidohydrolase; Provisional	99.91
COG0388	274	Predicted amidohydrolase [General function predict	99.91
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	99.91
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	99.91
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	99.9
PRK02628	679	nadE NAD synthetase; Reviewed	99.9
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	99.9
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	99.9
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	99.89
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.89
PRK13981	540	NAD synthetase; Provisional	99.88
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	99.85
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.82
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	99.8
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.78
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	99.76
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.62
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	99.61
PRK13825	388	conjugal transfer protein TraB; Provisional	99.52
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	98.86
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	95.06
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	94.48
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	93.88
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	93.72
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	93.66
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	93.41
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	93.39
PRK15018	245	1-acyl-sn-glycerol-3-phosphate acyltransferase; Pr	93.38
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	93.01
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	92.79
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	92.49
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	92.46
PRK13286	345	amiE acylamide amidohydrolase; Provisional	92.3
PLN02798	286	nitrilase	91.98
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	91.95
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	91.67
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	91.38
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	91.34
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	90.94
TIGR00530	130	AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltra	90.93
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	90.71
PRK13981	540	NAD synthetase; Provisional	90.3
PF01553	132	Acyltransferase: Acyltransferase; InterPro: IPR002	90.28
COG0388	274	Predicted amidohydrolase [General function predict	90.22
PLN02747	296	N-carbamolyputrescine amidase	89.02
cd07990	193	LPLAT_LCLAT1-like Lysophospholipid Acyltransferase	88.88
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	88.53
PLN00202	405	beta-ureidopropionase	88.49
PLN02504	346	nitrilase	88.05
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	87.94
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	87.77
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	87.57
PRK10438	256	C-N hydrolase family amidase; Provisional	86.72
smart00563	118	PlsC Phosphate acyltransferases. Function in phosp	86.52
cd07988	163	LPLAT_ABO13168-like Lysophospholipid Acyltransfera	85.93
cd07986	210	LPLAT_ACT14924-like Lysophospholipid Acyltransfera	85.05
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	84.84
PRK09856	275	fructoselysine 3-epimerase; Provisional	84.32
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	83.98
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	83.97
PTZ00261	355	acyltransferase; Provisional	83.77
COG1941	247	FrhG Coenzyme F420-reducing hydrogenase, gamma sub	83.06
PRK13287	333	amiF formamidase; Provisional	80.18

>PLN02798 nitrilase

Probab=99.95  E-value=4.9e-27  Score=162.54  Aligned_cols=117  Identities=78%  Similarity=1.178  Sum_probs=100.5

Q ss_pred             cccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE
Q 033342            5 HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL   84 (121)
Q Consensus         5 ~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i   84 (121)
                      ..||||++|++..+|.+.|++++.+++++|++.|+|||||||++..+|+...+...+++..+++..+.++++|+++++.|
T Consensus         9 ~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~i   88 (286)
T PLN02798          9 SSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWL   88 (286)
T ss_pred             CccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEE
Confidence            57999999999889999999999999999999999999999986436776555445555567788999999999999999


Q ss_pred             EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|++.++..+++++||++++|+|+|++++.|+|+||
T Consensus        89 v~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L  125 (286)
T PLN02798         89 SLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHL  125 (286)
T ss_pred             EEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEe
Confidence            9987665322457899999999999999999999986

>PLN02747 N-carbamolyputrescine amidase

Probab=99.95  E-value=5.7e-27  Score=162.84  Aligned_cols=117  Identities=29%  Similarity=0.361  Sum_probs=98.6

Q ss_pred             CCCCcccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc----hhhhcccCC-CChHHHHHHH
Q 033342            1 MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA----DNIKIAEPL-DGPIMQGYCS   75 (121)
Q Consensus         1 ~~~~~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~----~~~~~~~~~-~~~~~~~l~~   75 (121)
                      |.+.+.+|||++|+++.+|.+.|++++.+++++|++.|+|||||||+++ +||...    +....+... .++.++.+++
T Consensus         1 ~~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~   79 (296)
T PLN02747          1 MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFE-GYYFCQAQREDFFQRAKPYEGHPTIARMQK   79 (296)
T ss_pred             CCCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccC-CCCCccccccchhhhcccCCCChHHHHHHH
Confidence            5556789999999998899999999999999999999999999999998 777543    222233322 2478899999


Q ss_pred             HHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           76 LARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        76 ~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++++++|++|...+   .++++||++++|+|+|+++++|+|.||
T Consensus        80 ~a~~~~i~i~~g~~~~---~~~~~yNs~~~i~~~G~i~~~y~K~hL  122 (296)
T PLN02747         80 LAKELGVVIPVSFFEE---ANNAHYNSIAIIDADGTDLGLYRKSHI  122 (296)
T ss_pred             HHHHcCeEEEeeeeec---CCCceEEEEEEECCCCCCcceEEEEec
Confidence            9999999999986544   567899999999999999999999997

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.95  E-value=1.2e-26  Score=157.86  Aligned_cols=111  Identities=32%  Similarity=0.506  Sum_probs=97.9

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL   86 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~   86 (121)
                      |||++|+++. .|.+.|++++.+++++|++.|+|||||||+++ +||...+....+....++..+.++++|+++++++++
T Consensus         1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~   79 (253)
T cd07583           1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWN-TGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVA   79 (253)
T ss_pred             CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccC-CCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEe
Confidence            6999999986 89999999999999999999999999999999 888765443334456788999999999999999999


Q ss_pred             ccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           87 GGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        87 G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      |++++.  .++++||++++|+|+|++++.|+|+||
T Consensus        80 G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~~l  112 (253)
T cd07583          80 GSVAEK--EGGKLYNTAYVIDPDGELIATYRKIHL  112 (253)
T ss_pred             ceEEec--CCCcEEEEEEEECCCCcEEEEEeeeeC
Confidence            977653  557899999999999999999999997

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=99.95  E-value=2e-26  Score=158.62  Aligned_cols=111  Identities=31%  Similarity=0.504  Sum_probs=94.4

Q ss_pred             cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch----hhhcccCC-CChHHHHHHHHHHHcC
Q 033342            7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD----NIKIAEPL-DGPIMQGYCSLARESS   81 (121)
Q Consensus         7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~----~~~~~~~~-~~~~~~~l~~~a~~~~   81 (121)
                      ||||++|+++.+|.++|++++.+++++|+++|+|||||||+++ +||...+    ....++.. +++..+.++++|++++
T Consensus         1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~-~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~   79 (279)
T TIGR03381         1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFE-GPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELG   79 (279)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccC-CCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcC
Confidence            6899999998899999999999999999999999999999998 7875432    22233322 3578899999999999


Q ss_pred             cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|++|..++   .++++||++++++|+|++++.|+|+||
T Consensus        80 i~i~~g~~~~---~~~~~yNs~~~i~~~G~i~~~y~K~hL  116 (279)
T TIGR03381        80 VVIPVSFFEK---AGNAYYNSLAMIDADGSVLGVYRKSHI  116 (279)
T ss_pred             cEEEEeeeec---CCCceEEeEEEECCCCCEEEEEEeeec
Confidence            9999996443   556899999999999999999999997

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=99.94  E-value=2.3e-26  Score=157.30  Aligned_cols=113  Identities=41%  Similarity=0.629  Sum_probs=96.8

Q ss_pred             EEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhc--ccCCCChHHHHHHHHHHHcCcEEE
Q 033342            8 RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI--AEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus         8 ~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      |||++|+++.+|.++|++++.+++++|+++++|||||||+++ +||...+....  .....++..+.++++|++++++|+
T Consensus         1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~   79 (265)
T cd07572           1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFN-YPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLV   79 (265)
T ss_pred             CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCcccc-CcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEE
Confidence            699999998899999999999999999999999999999998 78876543332  334567889999999999999999


Q ss_pred             eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|+++++...++++||++++++|+|++++.|+|+||
T Consensus        80 ~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l  115 (265)
T cd07572          80 GGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHL  115 (265)
T ss_pred             EeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEe
Confidence            997765422237899999999999999999999986

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.94  E-value=4e-26  Score=157.88  Aligned_cols=114  Identities=30%  Similarity=0.466  Sum_probs=95.2

Q ss_pred             cccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch----hhhcccCC-CChHHH
Q 033342            5 HSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD----NIKIAEPL-DGPIMQ   71 (121)
Q Consensus         5 ~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~----~~~~~~~~-~~~~~~   71 (121)
                      +++|||++|+++.        .+.++|++++.+++++|+++|+|||||||+++ +||...+    +...++.. +++.++
T Consensus         2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (287)
T cd07568           2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFY-GPYFCAEQDTKWYEFAEEIPNGPTTK   80 (287)
T ss_pred             ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccC-CCCCccccccchhhhcccCCCChHHH
Confidence            5799999999964        78899999999999999999999999999998 6765321    22233333 567899


Q ss_pred             HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .++++|++++++|++|..++.  .++++||++++|+|+|++++.|+|+||
T Consensus        81 ~l~~~a~~~~i~ii~g~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL  128 (287)
T cd07568          81 RFAALAKEYNMVLILPIYEKE--QGGTLYNTAAVIDADGTYLGKYRKNHI  128 (287)
T ss_pred             HHHHHHHHCCEEEEEEeEEEc--CCCcEEEEEEEECCCCcEeeEEeeeec
Confidence            999999999999999865542  356899999999999999999999997

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.94  E-value=8.3e-26  Score=153.86  Aligned_cols=110  Identities=42%  Similarity=0.598  Sum_probs=95.3

Q ss_pred             EEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch--hhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342            9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD--NIKIAEPLDGPIMQGYCSLARESSMWLSL   86 (121)
Q Consensus         9 ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~a~~~~~~ii~   86 (121)
                      ||++|++..+|.++|++++.+.+++|+++|+|+|||||+++ +||...+  +...+....+++.+.++++|+++++++++
T Consensus         1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~   79 (255)
T cd07581           1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTM-ARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVA   79 (255)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhc-CCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEE
Confidence            68999998899999999999999999999999999999998 7876544  23344556678899999999999999999


Q ss_pred             ccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           87 GGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        87 G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      |+..+.  .++++||++++|+|+|++++.|+|+||
T Consensus        80 G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~~L  112 (255)
T cd07581          80 GMFEPA--GDGRVYNTLVVVGPDGEIIAVYRKIHL  112 (255)
T ss_pred             EeeeeC--CCCcEEEeEEEECCCCcEEEEEeeecc
Confidence            976542  345899999999999999999999997

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=99.94  E-value=8.1e-26  Score=156.96  Aligned_cols=111  Identities=22%  Similarity=0.334  Sum_probs=93.4

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHH----CCCcEEEccCCccCCCCCCchh---hhcccC-CCChHHHHHHHHHH
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAAS----AGAKLLCFPENFSYVGDKDADN---IKIAEP-LDGPIMQGYCSLAR   78 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~----~~~dlvv~PE~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~~~a~   78 (121)
                      |||++|+++. +|.+.|++++.+++++|++    .++|||||||+++ +||...+.   ..+++. .+++..+.++++|+
T Consensus         1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~l-tGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk   79 (295)
T cd07566           1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELAL-TGYNFHSLEHIKPYLEPTTSGPSFEWAREVAK   79 (295)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCc-ccCCcccHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            6999999986 8999999999999999987    8999999999998 88865422   223332 35788899999999


Q ss_pred             HcCcEEEeccceeecCCC--CceEEEEEEECCCCCEEeeeecCCC
Q 033342           79 ESSMWLSLGGFQEKGSDD--ARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        79 ~~~~~ii~G~~~~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++++|++|+.++.  .+  +++|||+++|+|+|+++++|+|+||
T Consensus        80 ~~~i~Iv~G~~e~~--~~~~~~~yNta~vi~~~G~ii~~YrK~HL  122 (295)
T cd07566          80 KFNCHVVIGYPEKV--DESSPKLYNSALVVDPEGEVVFNYRKSFL  122 (295)
T ss_pred             hcCCEEEEeeeEec--CCCCCceEEEEEEEcCCCeEEEEEecccc
Confidence            99999999965542  22  5899999999999999999999997

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>PLN02504 nitrilase

Probab=99.94  E-value=1.5e-25  Score=158.51  Aligned_cols=114  Identities=27%  Similarity=0.417  Sum_probs=96.4

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch-------------------hhhccc
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD-------------------NIKIAE   63 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~-------------------~~~~~~   63 (121)
                      .+++|||++|+++. .|...|++++.+++++|++.|+|||||||+++ +||+...                   ....+.
T Consensus        22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~l-tGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~  100 (346)
T PLN02504         22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFI-GGYPRGSTFGLAIGDRSPKGREDFRKYHASAI  100 (346)
T ss_pred             CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCcccc-ccCCcchhhccccccccchhHHHHHHHHHhcc
Confidence            45799999999975 89999999999999999999999999999999 8886411                   111233


Q ss_pred             CCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           64 PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        64 ~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ..+++.++.|+++|++++++|++|...+   .++++||++++|+|+|++++.|+|+|+
T Consensus       101 ~~~g~~i~~l~~~A~~~~i~iv~G~~e~---~~~~~yNsa~~i~~~G~i~~~yrK~~p  155 (346)
T PLN02504        101 DVPGPEVDRLAAMAGKYKVYLVMGVIER---DGYTLYCTVLFFDPQGQYLGKHRKLMP  155 (346)
T ss_pred             cCCCHHHHHHHHHHHHcCCEEEEeeeec---CCCceEEEEEEECCCCCEEeEEeeccC
Confidence            3467889999999999999999996544   567899999999999999999999985

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=99.94  E-value=1.5e-25  Score=154.66  Aligned_cols=112  Identities=32%  Similarity=0.563  Sum_probs=96.5

Q ss_pred             cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch----hhhccc-CCCChHHHHHHHHHHHcC
Q 033342            7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD----NIKIAE-PLDGPIMQGYCSLARESS   81 (121)
Q Consensus         7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~----~~~~~~-~~~~~~~~~l~~~a~~~~   81 (121)
                      ||||++|+++..|.++|++++.+++++|++.++|||||||+++ +||...+    ....++ ..+++.++.++++|++++
T Consensus         1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~   79 (284)
T cd07573           1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFE-TPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELG   79 (284)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEcccccc-CCCCcccccchhHHhccccCCCHHHHHHHHHHHHCC
Confidence            6899999999899999999999999999999999999999998 7776532    223333 456788999999999999


Q ss_pred             cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|++|..++.  .++++||++++++|+|++++.|+|.||
T Consensus        80 i~iv~g~~~~~--~~~~~yNs~~v~~~~G~i~~~y~K~~l  117 (284)
T cd07573          80 VVIPVSLFEKR--GNGLYYNSAVVIDADGSLLGVYRKMHI  117 (284)
T ss_pred             EEEEecceeeC--CCCcEEEEEEEECCCCCEEeEEeeecc
Confidence            99999976552  456899999999999999999999986

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=99.94  E-value=2e-25  Score=155.18  Aligned_cols=111  Identities=34%  Similarity=0.501  Sum_probs=94.4

Q ss_pred             cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh--------------hhcccCCCChHHH
Q 033342            7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN--------------IKIAEPLDGPIMQ   71 (121)
Q Consensus         7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~--------------~~~~~~~~~~~~~   71 (121)
                      ||||++|+++. +|.+.|++++.+++++|+++|+|||||||+++ +||...+.              .+.+...++++++
T Consensus         1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (297)
T cd07564           1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFI-PGYPYWIWFGAPAEGRELFARYYENSVEVDGPELE   79 (297)
T ss_pred             CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccc-cCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHH
Confidence            68999999874 89999999999999999999999999999998 78764221              1122334678899


Q ss_pred             HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .|+++|++++++|++|+..+   .++++||++++|+|+|++++.|+|+||
T Consensus        80 ~l~~~a~~~~i~iv~G~~~~---~~~~~yNs~~vi~~~G~i~~~y~K~~l  126 (297)
T cd07564          80 RLAEAARENGIYVVLGVSER---DGGTLYNTQLLIDPDGELLGKHRKLKP  126 (297)
T ss_pred             HHHHHHHHcCcEEEEeeEec---cCCceEEEEEEEcCCCCEeeeeeccCC
Confidence            99999999999999996544   466899999999999999999999986

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>cd07576 R-amidase_like Pseudomonas sp

Probab=99.93  E-value=2.7e-25  Score=151.16  Aligned_cols=110  Identities=37%  Similarity=0.562  Sum_probs=94.9

Q ss_pred             EEEEEEecc-ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh-hhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342            8 RVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN-IKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus         8 ~ia~vQ~~~-~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      |||++|+++ .+|.+.|++++.+++++|+++|+|||||||+++ +||...+. ...+....++..+.++++|++++++++
T Consensus         1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii   79 (254)
T cd07576           1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFL-TGYNIGDAVARLAEPADGPALQALRAIARRHGIAIV   79 (254)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccc-cCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEE
Confidence            799999998 489999999999999999999999999999999 88776432 222334567889999999999999999


Q ss_pred             eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|....   .++++||++++++|+|++++.|+|+||
T Consensus        80 ~G~~~~---~~~~~yNs~~~i~~~G~i~~~y~K~~l  112 (254)
T cd07576          80 VGYPER---AGGAVYNAAVLIDEDGTVLANYRKTHL  112 (254)
T ss_pred             Eecccc---CCCceEEEEEEECCCCCEeeEEEeecc
Confidence            995443   557899999999999999999999996

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=99.93  E-value=1.1e-25  Score=146.65  Aligned_cols=110  Identities=40%  Similarity=0.579  Sum_probs=92.9

Q ss_pred             EEEEEEecc---ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC--------chhhhcccCCCChHHHHHHHH
Q 033342            8 RVAVAQMTS---INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD--------ADNIKIAEPLDGPIMQGYCSL   76 (121)
Q Consensus         8 ~ia~vQ~~~---~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~   76 (121)
                      |||++|+++   ..|.++|++++.+++++|+++++|||||||+++ +||..        .+....+....++.++.+.++
T Consensus         1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (186)
T PF00795_consen    1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMAL-PGYPNPGWCEDDFADLDEFAEPLDGPYLERLAEL   79 (186)
T ss_dssp             EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTT-TCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHH
T ss_pred             CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchh-cccccccccccccchhhhhccccccHHHHHHHHH
Confidence            799999994   489999999999999999999999999999999 77722        122333444558899999999


Q ss_pred             HHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           77 ARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        77 a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      |+++++++++|....   +++++||++++++|+|++++.|+|+||
T Consensus        80 a~~~~~~i~~G~~~~---~~~~~~N~~~~~~~~g~~~~~y~K~~l  121 (186)
T PF00795_consen   80 AKENGITIVAGIPER---DDGGLYNSAVVIDPDGEILGRYRKIHL  121 (186)
T ss_dssp             HHHHTSEEEEEEEEE---ETTEEEEEEEEEETTSEEEEEEEGSST
T ss_pred             HHhcCCccccccccc---ccccccceeEEEEeeecccccccceee
Confidence            999999999995444   667899999999999999999999997

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.93  E-value=3.4e-25  Score=152.91  Aligned_cols=107  Identities=40%  Similarity=0.555  Sum_probs=92.8

Q ss_pred             EEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342            8 RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG   87 (121)
Q Consensus         8 ~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G   87 (121)
                      |||++|+++..|.++|++++.+++++|+++|+|||||||+++ +||....  ..+...+++.++.++++|++++++|++|
T Consensus         1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l-tG~~~~~--~~~~~~~~~~~~~l~~lA~~~~i~iv~G   77 (279)
T cd07579           1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELAL-TGLDDPA--SEAESDTGPAVSALRRLARRLRLYLVAG   77 (279)
T ss_pred             CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccc-cCCCChH--HhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence            699999998779999999999999999999999999999998 7876432  2344456788999999999999999999


Q ss_pred             cceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           88 GFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        88 ~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +..+   .++++||++++++|+| +++.|+|+||
T Consensus        78 ~~~~---~~~~~yNs~~vi~~~G-~i~~Y~K~hL  107 (279)
T cd07579          78 FAEA---DGDGLYNSAVLVGPEG-LVGTYRKTHL  107 (279)
T ss_pred             ceEc---cCCcEEEEEEEEeCCe-eEEEEecccC
Confidence            6544   5568999999999999 5699999997

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=99.93  E-value=4.2e-25  Score=153.26  Aligned_cols=113  Identities=26%  Similarity=0.389  Sum_probs=94.6

Q ss_pred             cEEEEEEecc-----ccCHHHHHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCCc--hhhhcccCCCChHHHHHHHHH
Q 033342            7 VRVAVAQMTS-----INDLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDA--DNIKIAEPLDGPIMQGYCSLA   77 (121)
Q Consensus         7 ~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~a   77 (121)
                      ++||++|+++     .++.+.|++++.+++++|++  .|+|||||||+++ +||..+  ....+++..+++..+.++++|
T Consensus         1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~l-tGy~~~~~~~~~~a~~~~~~~~~~l~~lA   79 (291)
T cd07565           1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYST-QGLMYDKWTMDETACTVPGPETDIFAEAC   79 (291)
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCccc-ccCCCCcchhhhhccCCCChhHHHHHHHH
Confidence            4799999997     37999999999999999986  5999999999999 887642  234455556778999999999


Q ss_pred             HHcCcEEEeccceeecCC-CCceEEEEEEECCCCCEEeeeecCCC
Q 033342           78 RESSMWLSLGGFQEKGSD-DARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        78 ~~~~~~ii~G~~~~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++++++++|..++ ... ++++||++++|+|+|+++++|+|+||
T Consensus        80 ~~~~i~i~~g~~e~-~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl  123 (291)
T cd07565          80 KEAKVWGVFSIMER-NPDHGKNPYNTAIIIDDQGEIVLKYRKLHP  123 (291)
T ss_pred             HHCCeEEEEEeeee-cCCCCCceEEEEEEECCCCcEEEEEEeccc
Confidence            99999999885544 211 16899999999999999999999996

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.93  E-value=5e-25  Score=150.30  Aligned_cols=112  Identities=37%  Similarity=0.639  Sum_probs=95.1

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh----hhcccCCCChHHHHHHHHHHHcCc
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN----IKIAEPLDGPIMQGYCSLARESSM   82 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~a~~~~~   82 (121)
                      |||++|++.. +|.+.|++++.+++++|++.++|||||||+++ +||.....    ..+++...++..+.++++|+++++
T Consensus         1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   79 (258)
T cd07584           1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELAT-TGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGV   79 (258)
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccc-cCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCe
Confidence            6999999874 89999999999999999999999999999999 88865422    223444566789999999999999


Q ss_pred             EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++|+... ...++++||++++|+|+|++++.|+|+||
T Consensus        80 ~i~~G~~~~-~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l  117 (258)
T cd07584          80 YIVCGFVEK-GGVPGKVYNSAVVIDPEGESLGVYRKIHL  117 (258)
T ss_pred             EEEEeehcc-cCCCCceEEEEEEECCCCCEEeEEEeecC
Confidence            999997654 22346899999999999999999999997

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.93  E-value=6e-25  Score=156.26  Aligned_cols=115  Identities=24%  Similarity=0.361  Sum_probs=94.9

Q ss_pred             cccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC--c---hhhhcccCC-CChHH
Q 033342            5 HSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD--A---DNIKIAEPL-DGPIM   70 (121)
Q Consensus         5 ~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~--~---~~~~~~~~~-~~~~~   70 (121)
                      +.||||++|+++.        +|.+.|++++.+++++|++.|+|||||||+++ +||..  .   .+..+++.. +++..
T Consensus        62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l-~g~~~~~~~~~~~~~~ae~~~~g~~~  140 (363)
T cd07587          62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWT-MPFAFCTREKLPWCEFAESAEDGPTT  140 (363)
T ss_pred             ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEcccccc-CCccccccccchHHHHhhccCCChHH
Confidence            4699999999853        48999999999999999999999999999998 66642  1   123445543 57889


Q ss_pred             HHHHHHHHHcCcEEEeccceeecCC-CCceEEEEEEECCCCCEEeeeecCCC
Q 033342           71 QGYCSLARESSMWLSLGGFQEKGSD-DARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        71 ~~l~~~a~~~~~~ii~G~~~~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +.++++|++++++|++|..++ ... ++++||++++|+|+|++++.|+|+||
T Consensus       141 ~~l~~lAk~~~i~Iv~gi~e~-~~~~~~~~yNta~vi~~~G~ilg~yrK~hL  191 (363)
T cd07587         141 KFCQELAKKYNMVIVSPILER-DEEHGDTIWNTAVVISNSGNVLGKSRKNHI  191 (363)
T ss_pred             HHHHHHHHHcCcEEEEeeeee-ecCCCCcEEEEEEEECCCCCEEeeeeeEec
Confidence            999999999999998885444 222 46899999999999999999999996

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=99.93  E-value=4.7e-25  Score=153.66  Aligned_cols=114  Identities=33%  Similarity=0.361  Sum_probs=93.2

Q ss_pred             cccEEEEEEeccc---cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch-------hhhcccC-CCChHHHHH
Q 033342            5 HSVRVAVAQMTSI---NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD-------NIKIAEP-LDGPIMQGY   73 (121)
Q Consensus         5 ~~~~ia~vQ~~~~---~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~-------~~~~~~~-~~~~~~~~l   73 (121)
                      +++|||++|+++.   .+.++|++++.+++++|++.|+|||||||+++ +||....       ...+.+. ..++..+.+
T Consensus         2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (302)
T cd07569           2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELAL-TTFFPRWYFPDEAELDSFFETEMPNPETQPL   80 (302)
T ss_pred             ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccc-cCcccccccCChHHhhhhhhhcCCChhHHHH
Confidence            4799999999864   38899999999999999999999999999999 7764321       1112222 456788899


Q ss_pred             HHHHHHcCcEEEeccceeecCCCC---ceEEEEEEECCCCCEEeeeecCCC
Q 033342           74 CSLARESSMWLSLGGFQEKGSDDA---RLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        74 ~~~a~~~~~~ii~G~~~~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++|+++++.+++|..+..  .++   ++||++++|+|+|+++++|+|+||
T Consensus        81 ~~~a~~~~i~iv~G~~~~~--~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l  129 (302)
T cd07569          81 FDRAKELGIGFYLGYAELT--EDGGVKRRFNTSILVDKSGKIVGKYRKVHL  129 (302)
T ss_pred             HHHHHHhCeEEEEeceeec--CCCCcceeeeEEEEECCCCCEeeeeeEEec
Confidence            9999999999999965442  333   799999999999999999999996

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>PLN00202 beta-ureidopropionase

Probab=99.93  E-value=7.2e-25  Score=157.52  Aligned_cols=117  Identities=26%  Similarity=0.340  Sum_probs=97.0

Q ss_pred             CcccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC----chhhhcccCCCChHHH
Q 033342            4 AHSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD----ADNIKIAEPLDGPIMQ   71 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~----~~~~~~~~~~~~~~~~   71 (121)
                      .+.+|||++|+++.        .+.+.|++++.+++++|+..|+|||||||+|+ +||..    ..+...++..+++..+
T Consensus        84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~-~g~~~~~~~~~~~~~ae~~~g~~~~  162 (405)
T PLN00202         84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWT-MPFAFCTREKRWCEFAEPVDGESTK  162 (405)
T ss_pred             CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhc-cccccccccchHHHHhhhCCCHHHH
Confidence            35799999999963        48999999999999999999999999999988 66642    1234455656788899


Q ss_pred             HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .++++|++++++|++|..++....++++|||+++|+++|+++++|+|+||
T Consensus       163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL  212 (405)
T PLN00202        163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHI  212 (405)
T ss_pred             HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccC
Confidence            99999999999999995443211245799999999999999999999997

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.93  E-value=1.6e-24  Score=147.95  Aligned_cols=112  Identities=29%  Similarity=0.380  Sum_probs=94.3

Q ss_pred             cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh---hhcccCCCChHHHHHHHHHHHcCc
Q 033342            7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN---IKIAEPLDGPIMQGYCSLARESSM   82 (121)
Q Consensus         7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~a~~~~~   82 (121)
                      +|||++|++.. +|.+.|++++.+++++|+++|+|||||||+++ +||...+.   ..+.+..+++..+.++++|+++++
T Consensus         1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   79 (258)
T cd07578           1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMAT-TGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDC   79 (258)
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccc-cCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCc
Confidence            58999999985 89999999999999999999999999999999 88875432   234444566789999999999999


Q ss_pred             EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .|++|.... ...++++||++++|+|+| +++.|+|+||
T Consensus        80 ~ii~G~~~~-~~~~~~~yNs~~vi~~~g-~~~~y~K~h~  116 (258)
T cd07578          80 YIVVGLPEV-DSRSGIYYNSAVLIGPSG-VIGRHRKTHP  116 (258)
T ss_pred             EEEEeccee-cCCCCCeeEEEEEECCCC-cEEeEeeecC
Confidence            999997554 223468999999999988 6799999996

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13287 amiF formamidase; Provisional

Probab=99.92  E-value=2.4e-24  Score=151.78  Aligned_cols=115  Identities=24%  Similarity=0.429  Sum_probs=95.4

Q ss_pred             CcccEEEEEEecc-----ccCHHHHHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCch--hhhcccCCCChHHHHHH
Q 033342            4 AHSVRVAVAQMTS-----INDLAANFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDAD--NIKIAEPLDGPIMQGYC   74 (121)
Q Consensus         4 ~~~~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~--~~~~~~~~~~~~~~~l~   74 (121)
                      ...+|||++|+++     ..+.++|++++.+++++|++.  ++|||||||+++ +||..+.  ....+...+++..+.++
T Consensus        11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l-~G~~~~~~~~~~~a~~~~g~~~~~l~   89 (333)
T PRK13287         11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYST-QGLNTKKWTTEEFLCTVDGPEVDAFA   89 (333)
T ss_pred             CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccc-ccCCccccchhhhcccCCCHHHHHHH
Confidence            4679999999996     278999999999999999864  899999999999 8887652  22344456778899999


Q ss_pred             HHHHHcCcEEEeccceeecCCCC-ceEEEEEEECCCCCEEeeeecCCC
Q 033342           75 SLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        75 ~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|+++++++++|..++ . .++ ++|||+++++|+|+++++|+|+||
T Consensus        90 ~~a~~~~i~~~~g~~e~-~-~~~~~~yNsa~vi~~~G~i~~~YrK~h~  135 (333)
T PRK13287         90 QACKENKVWGVFSIMER-N-PDGNEPYNTAIIIDDQGEIILKYRKLHP  135 (333)
T ss_pred             HHHHHcCeEEEEeeEEE-c-CCCCceEEEEEEECCCCcEEEEEeeccc
Confidence            99999999998886544 2 233 499999999999999999999996

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.92  E-value=2.2e-24  Score=147.39  Aligned_cols=109  Identities=34%  Similarity=0.479  Sum_probs=93.4

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhc-ccCCCChHHHHHHHHHHHcCcEEE
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI-AEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      |||++|+++. +|...|++++.+++++|++.|+|||||||+++ +||...+.... .....++..+.++++|++++++|+
T Consensus         1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~   79 (261)
T cd07585           1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCI-TGYTHVRALSREAEVPDGPSTQALSDLARRYGLTIL   79 (261)
T ss_pred             CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEeccccc-ccccCCcccchhcccCCChHHHHHHHHHHHcCcEEE
Confidence            6999999985 89999999999999999999999999999998 88876543222 233457789999999999999999


Q ss_pred             eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|+.++   .++++||++++|+|+|. ++.|+|.||
T Consensus        80 ~G~~~~---~~~~~yNs~~vi~~~g~-i~~y~K~~l  111 (261)
T cd07585          80 AGLIEK---AGDRPYNTYLVCLPDGL-VHRYRKLHL  111 (261)
T ss_pred             Eecccc---CCCceeEEEEEECCCCc-EeEEeeecC
Confidence            997644   56689999999999998 589999997

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=99.92  E-value=2.3e-24  Score=147.14  Aligned_cols=108  Identities=18%  Similarity=0.282  Sum_probs=87.2

Q ss_pred             cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcE
Q 033342            5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW   83 (121)
Q Consensus         5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~   83 (121)
                      ++||||++|+++. +|.+.|++++.++++++  .|+|||||||+++ +||...+... .. ..++..+.++++|+++++.
T Consensus         2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~-~Gy~~~~~~~-~~-~~~~~~~~l~~~A~~~~~~   76 (256)
T PRK10438          2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFT-TGFAMEAAAS-SL-PQDDVVAWMTAKAQQTNAL   76 (256)
T ss_pred             CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCccc-CCCcccchhh-cc-ccchHHHHHHHHHHHcCeE
Confidence            3599999999975 89999999999999975  6999999999998 8887543211 11 2356889999999999974


Q ss_pred             EEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           84 LSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        84 ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                       ++|++.+.  .++++|||+++|+|+|. ++.|+|+||
T Consensus        77 -i~g~~~~~--~~~~~~Nsa~vi~~~G~-~~~y~K~hL  110 (256)
T PRK10438         77 -IAGSVALQ--TESGAVNRFLLVEPGGT-VHFYDKRHL  110 (256)
T ss_pred             -EEEEEEEe--cCCCeEEEEEEEcCCCC-EEEEeeeec
Confidence             56766543  44578999999999998 479999997

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=99.92  E-value=2.9e-24  Score=149.26  Aligned_cols=113  Identities=24%  Similarity=0.296  Sum_probs=90.4

Q ss_pred             EEEEEEecc-ccCH-------HHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhh--c--------------c-
Q 033342            8 RVAVAQMTS-INDL-------AANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIK--I--------------A-   62 (121)
Q Consensus         8 ~ia~vQ~~~-~~~~-------~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~--~--------------~-   62 (121)
                      |+|+||..+ +.+.       +.|++++.+++++|++.|+|||||||+++ +||...+...  .              + 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~l-tGy~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (299)
T cd07567           2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGL-TGFIFTRFVIYPFLEDVPDPEVNWNPCLD   80 (299)
T ss_pred             EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEcccccc-CCCCCCccccCchhccccccccccccccc
Confidence            789999986 3444       89999999999999999999999999999 8887543221  1              0 


Q ss_pred             --cCCCChHHHHHHHHHHHcCcEEEeccceeec---------CCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           63 --EPLDGPIMQGYCSLARESSMWLSLGGFQEKG---------SDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        63 --~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~---------~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                        ...+++.++.++++|++++++|++|...+..         ..++++||++++|+|+|++++.|+|+||
T Consensus        81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hL  150 (299)
T cd07567          81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNL  150 (299)
T ss_pred             ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeeccc
Confidence              1134578999999999999999999655421         1223699999999999999999999997

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.92  E-value=3.9e-24  Score=145.66  Aligned_cols=108  Identities=23%  Similarity=0.394  Sum_probs=91.9

Q ss_pred             cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342            7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus         7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      ||||++|+++. +|++.|++++.+++++|++ |+|||||||+++ +||...+. ..++...+...+.++++|+++++.++
T Consensus         1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l-~g~~~~~~-~~~~~~~~~~~~~l~~la~~~~i~i~   77 (252)
T cd07575           1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFT-TGFSMNAE-ALAEPMNGPTLQWMKAQAKKKGAAIT   77 (252)
T ss_pred             CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCc-CCCCccHH-HhhcccCChHHHHHHHHHHHCCeEEE
Confidence            79999999986 8999999999999999987 999999999999 88865433 34455567889999999999999887


Q ss_pred             eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +| ++++  +++++||++++++|+|++ ..|+|+||
T Consensus        78 ~~-~~~~--~~~~~yNs~~~i~~~G~i-~~y~K~~l  109 (252)
T cd07575          78 GS-LIIK--EGGKYYNRLYFVTPDGEV-YHYDKRHL  109 (252)
T ss_pred             EE-EEEc--cCCceEEEEEEECCCCCE-EEEeeeec
Confidence            55 5543  557899999999999987 59999986

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.92  E-value=6e-24  Score=145.78  Aligned_cols=109  Identities=38%  Similarity=0.499  Sum_probs=91.1

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhh---hccc-CCCChHHHHHHHHHHHcCc
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNI---KIAE-PLDGPIMQGYCSLARESSM   82 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~a~~~~~   82 (121)
                      |||++|+++. ++.++|++++.+++++|+++|+|||||||+++ +||...+..   .+.+ ..+++..+.++++|+++++
T Consensus         1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (268)
T cd07580           1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELAN-TGYVFESRDEAFALAEEVPDGASTRAWAELAAELGL   79 (268)
T ss_pred             CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCccc-ccCCCCCHHHHHHhhccCCCCchHHHHHHHHHHcCc
Confidence            6999999986 89999999999999999999999999999999 777654321   1222 2346688999999999999


Q ss_pred             EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++|...+   .++++||++++++++|. ++.|+|+||
T Consensus        80 ~i~~G~~~~---~~~~~yNs~~vi~~~g~-~~~y~K~~l  114 (268)
T cd07580          80 YIVAGFAER---DGDRLYNSAVLVGPDGV-IGTYRKAHL  114 (268)
T ss_pred             EEEeecccc---cCCceEEEEEEECCCCc-EEEEEEecC
Confidence            999995443   55689999999999995 699999997

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.92  E-value=9.3e-24  Score=146.67  Aligned_cols=113  Identities=21%  Similarity=0.277  Sum_probs=93.3

Q ss_pred             EEEEEEecc-----ccCHHHHHHHHHHHHHHHHH-----CCCcEEEccCCccCCCCCCchh------hhcccCCCChHHH
Q 033342            8 RVAVAQMTS-----INDLAANFATCSRLVKEAAS-----AGAKLLCFPENFSYVGDKDADN------IKIAEPLDGPIMQ   71 (121)
Q Consensus         8 ~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~-----~~~dlvv~PE~~~~~~~~~~~~------~~~~~~~~~~~~~   71 (121)
                      +++.+|+..     .+|+..|++++.+++++|++     +++|||||||+++ +||...+.      .+.++..+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~l-tGy~~~~~~~~~~~~~~a~~~~~~~~~   80 (294)
T cd07582           2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYAL-QGFPMGEPREVWQFDKAAIDIPGPETE   80 (294)
T ss_pred             eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCcccc-ccCCcccchhhhhhhhccccCCCHHHH
Confidence            567889864     37999999999999999986     4799999999999 88875432      2334556788999


Q ss_pred             HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .|+++|++++++|++|++++....++++||++++|+|+|++++.|+|+||
T Consensus        81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl  130 (294)
T cd07582          81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNS  130 (294)
T ss_pred             HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeecc
Confidence            99999999999999997654211236899999999999999999999996

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=99.92  E-value=8.4e-24  Score=143.43  Aligned_cols=109  Identities=39%  Similarity=0.624  Sum_probs=94.1

Q ss_pred             EEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhh---cccCCCChHHHHHHHHHHHcCcEE
Q 033342            9 VAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIK---IAEPLDGPIMQGYCSLARESSMWL   84 (121)
Q Consensus         9 ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~a~~~~~~i   84 (121)
                      ||++|+++. .+.++|++++.+++++|.++++|||||||+++ +|+.......   ..........+.++++|+++++++
T Consensus         1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i   79 (253)
T cd07197           1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFL-TGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYI   79 (253)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccc-cCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEE
Confidence            689999987 99999999999999999999999999999998 7876543322   233456788999999999999999


Q ss_pred             EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|+..+   .++++||++++++|+|++++.|+|.||
T Consensus        80 i~G~~~~---~~~~~~N~~~~i~~~G~i~~~~~K~~l  113 (253)
T cd07197          80 VAGIAEK---DGDKLYNTAVVIDPDGEIIGKYRKIHL  113 (253)
T ss_pred             EeeeEEc---cCCceEEEEEEECCCCeEEEEEEEeec
Confidence            9997644   556899999999999998999999986

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=99.91  E-value=1.3e-23  Score=148.43  Aligned_cols=116  Identities=22%  Similarity=0.312  Sum_probs=94.8

Q ss_pred             cccEEEEEEecc-----ccCHHHHHHHHHHHHHHHH--HCCCcEEEccCCccCCCCC--CchhhhcccCCCChHHHHHHH
Q 033342            5 HSVRVAVAQMTS-----INDLAANFATCSRLVKEAA--SAGAKLLCFPENFSYVGDK--DADNIKIAEPLDGPIMQGYCS   75 (121)
Q Consensus         5 ~~~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~--~~~~dlvv~PE~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~   75 (121)
                      ..++||++|.+.     ..|...|++++.+.+++|+  ..++|||||||+++ +||.  ..++.+.+...+++..+.+++
T Consensus        11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l-~G~~y~~~~~~~~a~~i~g~~~~~l~~   89 (345)
T PRK13286         11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYST-HGIMYDRQEMYETASTIPGEETAIFAE   89 (345)
T ss_pred             CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccc-cCCCcChHHHHHhcccCCCHHHHHHHH
Confidence            569999999984     3678999999999999886  45899999999999 8844  333445566677888999999


Q ss_pred             HHHHcCcEEEeccceeecC--CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           76 LARESSMWLSLGGFQEKGS--DDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        76 ~a~~~~~~ii~G~~~~~~~--~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|+++++++++|...+...  .++++||++++|+|+|++++.|+|+|+
T Consensus        90 ~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p  137 (345)
T PRK13286         90 ACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMP  137 (345)
T ss_pred             HHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecC
Confidence            9999999998876533221  245699999999999999999999986

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=99.91  E-value=1.8e-23  Score=143.92  Aligned_cols=111  Identities=37%  Similarity=0.506  Sum_probs=94.8

Q ss_pred             ccEEEEEEecc-ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccCCCChHHHHHHHHHHHcC
Q 033342            6 SVRVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEPLDGPIMQGYCSLARESS   81 (121)
Q Consensus         6 ~~~ia~vQ~~~-~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~   81 (121)
                      .+|||++|++. ..|...|++++.+++++|++.++|||||||+++ +||...+   .........++..+.++++++++.
T Consensus         2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~-tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~   80 (274)
T COG0388           2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFL-TGYPCEDDLFLEEAAAEAGEETLEFLAALAEEGG   80 (274)
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccc-cCCCcccHHHHHhhhhccCChHHHHHHHHHHhCC
Confidence            58999999997 599999999999999999999999999999999 8988764   333334456789999999999777


Q ss_pred             cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +.++.|+.+.   .. ..||++++++++|++++.|+|+||
T Consensus        81 ~~ivg~~~~~---~~-~~~~~~~~i~~~G~ii~~y~K~hl  116 (274)
T COG0388          81 VIIVGGPLPE---RE-KLYNNAALIDPDGEILGKYRKLHL  116 (274)
T ss_pred             eEEEEeeeec---cc-cceeeEEEEcCCCcEEeEEeeecC
Confidence            8777776555   22 789999999999999999999997

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=99.91  E-value=6e-24  Score=146.53  Aligned_cols=111  Identities=31%  Similarity=0.388  Sum_probs=91.1

Q ss_pred             cEEEEEEeccc--cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCC---CCCchh------hhcccCCCChHHHHHHH
Q 033342            7 VRVAVAQMTSI--NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVG---DKDADN------IKIAEPLDGPIMQGYCS   75 (121)
Q Consensus         7 ~~ia~vQ~~~~--~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~---~~~~~~------~~~~~~~~~~~~~~l~~   75 (121)
                      ||||++|+++.  .|.+.|++++++++++|++.|+|||||||+++ +|   +...+.      ........++..+.+++
T Consensus         1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   79 (280)
T cd07574           1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFT-MELLSLLPEAIDGLDEAIRALAALTPDYVALFSE   79 (280)
T ss_pred             CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhH-HHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999974  79999999999999999999999999999997 44   222111      11112234678899999


Q ss_pred             HHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           76 LARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        76 ~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++++++|++|+++..  .++++||++++++|+|.+ +.|+|.||
T Consensus        80 ~a~~~~i~iv~G~~~~~--~~~~~yNs~~~i~~~G~v-~~y~K~~l  122 (280)
T cd07574          80 LARKYGINIIAGSMPVR--EDGRLYNRAYLFGPDGTI-GHQDKLHM  122 (280)
T ss_pred             HHHHhCCEEEecceEEc--CCCCeEEEEEEECCCCCE-EEEeeecc
Confidence            99999999999976653  567899999999999988 99999996

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.91  E-value=2.4e-23  Score=142.19  Aligned_cols=106  Identities=28%  Similarity=0.460  Sum_probs=89.5

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccCC-CChHHHHHHHHHHHcCc
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEPL-DGPIMQGYCSLARESSM   82 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~~~a~~~~~   82 (121)
                      |||++|+++. +|.+.|++++.+++++|.   +|||||||+++ +||....   ...+++.. +++.++.++++|+++++
T Consensus         1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   76 (259)
T cd07577           1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFN-TGYAFTSKEEVASLAESIPDGPTTRFLQELARETGA   76 (259)
T ss_pred             CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccc-cCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence            6999999985 899999999999999873   99999999999 8887532   22334433 56889999999999999


Q ss_pred             EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++|+...   .++++||++++++|+| +++.|+|+||
T Consensus        77 ~ii~G~~~~---~~~~~yNs~~vi~~~G-i~~~y~K~~l  111 (259)
T cd07577          77 YIVAGLPER---DGDKFYNSAVVVGPEG-YIGIYRKTHL  111 (259)
T ss_pred             EEEecceec---cCCceEEEEEEECCCc-cEeeEeeccC
Confidence            999996544   5678999999999999 8899999997

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=99.90  E-value=2.5e-23  Score=142.13  Aligned_cols=109  Identities=24%  Similarity=0.318  Sum_probs=84.6

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--CCCChHHHHHHHHHHHcCcEE
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--PLDGPIMQGYCSLARESSMWL   84 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~~~i   84 (121)
                      |||++|+++. +|.++|++++.+++++|++.|+|||||||+++ +||...+......  ....+.++.+.+.++++++++
T Consensus         1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~i   79 (261)
T cd07570           1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSL-TGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAV   79 (261)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhc-cCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEE
Confidence            6999999975 89999999999999999999999999999999 8887543211110  011233444444445569999


Q ss_pred             EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|+..+   .++++||+++++ ++|++++.|+|+||
T Consensus        80 i~G~~~~---~~~~~yNs~~~i-~~G~i~~~y~K~~l  112 (261)
T cd07570          80 VVGLPLR---HDGKLYNAAAVL-QNGKILGVVPKQLL  112 (261)
T ss_pred             EEeceEe---cCCCEEEEEEEE-eCCEEEEEEECccC
Confidence            9997654   557899999999 59999999999996

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>PRK02628 nadE NAD synthetase; Reviewed

Probab=99.90  E-value=2.5e-23  Score=157.70  Aligned_cols=112  Identities=26%  Similarity=0.185  Sum_probs=94.1

Q ss_pred             cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--CCCChHHHHHHHHHHHcC
Q 033342            5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--PLDGPIMQGYCSLARESS   81 (121)
Q Consensus         5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~   81 (121)
                      ..||||++|+++. +|++.|++++.+.+++|+++|||||||||+++ +||.+.+......  ....+.++.|+++|++++
T Consensus        11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~l-tGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~   89 (679)
T PRK02628         11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSL-SGYSCDDLFLQDTLLDAVEDALATLVEASADLD   89 (679)
T ss_pred             CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccc-cCCCcchhhccHHHHHhhHHHHHHHHHHHhhcC
Confidence            4699999999986 99999999999999999999999999999999 8998765421111  122367888999999999


Q ss_pred             cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +.|++|...+   .++++||++++++ +|++++.|+|+||
T Consensus        90 i~ivvG~p~~---~~~~lyNsa~vi~-~G~il~~y~K~hL  125 (679)
T PRK02628         90 PLLVVGAPLR---VRHRLYNCAVVIH-RGRILGVVPKSYL  125 (679)
T ss_pred             EEEEEeeEEE---ECCEEEEEEEEEc-CCEEEEEeccccC
Confidence            9999995433   4568999999998 7999999999997

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=99.90  E-value=3.2e-23  Score=142.48  Aligned_cols=104  Identities=27%  Similarity=0.306  Sum_probs=89.8

Q ss_pred             cEEEEEEeccc-c------CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH
Q 033342            7 VRVAVAQMTSI-N------DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE   79 (121)
Q Consensus         7 ~~ia~vQ~~~~-~------~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   79 (121)
                      +||+++|+++. +      |.++|++++.+++++|+++++|+|||||+++ +||.         ..+++..+.++++|++
T Consensus         1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l-~g~~---------~~~~~~~~~l~~~ak~   70 (270)
T cd07571           1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETAL-PFDL---------QRDPDALARLARAARA   70 (270)
T ss_pred             CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcC-Cccc---------ccCHHHHHHHHHHHHh
Confidence            58999999975 3      7899999999999999999999999999998 7764         1356788999999999


Q ss_pred             cCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           80 SSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        80 ~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++++++|...+. ..++++||++++++|+|+++++|+|+||
T Consensus        71 ~~i~ii~G~~~~~-~~~~~~~Ns~~~i~~~G~i~~~y~K~~L  111 (270)
T cd07571          71 VGAPLLTGAPRRE-PGGGRYYNSALLLDPGGGILGRYDKHHL  111 (270)
T ss_pred             cCCeEEEeeeeec-cCCCceEEEEEEECCCCCCcCcEeeeec
Confidence            9999999976552 1225899999999999998999999986

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.90  E-value=5.7e-23  Score=140.93  Aligned_cols=108  Identities=28%  Similarity=0.432  Sum_probs=87.4

Q ss_pred             EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh-hhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342            8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN-IKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus         8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      |||++|++.. +|.+.|++++.+++++|+++|+|||||||+++ +||...+. .+.+.....+.++.+++.++  ++.++
T Consensus         1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~--~~~ii   77 (269)
T cd07586           1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSL-TGYNLGDLVYEVAMHADDPRLQALAEASG--GICVV   77 (269)
T ss_pred             CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhc-cCCCchhhhhhhhcccchHHHHHHHHHcC--CCEEE
Confidence            6999999976 89999999999999999999999999999998 88876532 22333334556666666653  79999


Q ss_pred             eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|+....  .++++||++++| ++|+++++|+|+||
T Consensus        78 ~G~~~~~--~~~~~yNt~~vi-~~G~i~~~y~K~~l  110 (269)
T cd07586          78 FGFVEEG--RDGRFYNSAAYL-EDGRVVHVHRKVYL  110 (269)
T ss_pred             EeCeEEc--CCCcEEEEEEEe-cCCEEEEEEEeEeC
Confidence            9976652  357899999999 79999999999986

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=99.89  E-value=6.6e-23  Score=155.54  Aligned_cols=111  Identities=17%  Similarity=0.096  Sum_probs=88.6

Q ss_pred             cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHH---HHc
Q 033342            5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLA---RES   80 (121)
Q Consensus         5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a---~~~   80 (121)
                      ..||||++|++++ +|++.|++++.+.+++|+++|||||||||+++ +||.+.+...... ......+.+.+++   +++
T Consensus         2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~l-TGY~~~Dl~~~~~-~~~~~~~~L~~La~~a~~~   79 (700)
T PLN02339          2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEI-TGYGCEDHFLELD-TVTHSWECLAEILVGDLTD   79 (700)
T ss_pred             ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcc-CCCChHHHhhChh-HHHHHHHHHHHHHhhcccC
Confidence            4799999999987 79999999999999999999999999999999 9998765432121 1122234455555   467


Q ss_pred             CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++.+++|....   .++++||+++++. +|++++.|+|.||
T Consensus        80 ~i~vvvG~p~~---~~~~lYN~a~vi~-~GkIlg~y~K~hL  116 (700)
T PLN02339         80 GILCDIGMPVI---HGGVRYNCRVFCL-NRKILLIRPKMWL  116 (700)
T ss_pred             CeEEEEeeeEE---ECCeEEEEEEEEe-CCEEEEEEecccC
Confidence            99999995444   4457999999996 7999999999997

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.89  E-value=4.5e-23  Score=136.19  Aligned_cols=118  Identities=51%  Similarity=0.889  Sum_probs=106.5

Q ss_pred             CcccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcE
Q 033342            4 AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW   83 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~   83 (121)
                      ....+||++|+....|...|++.+.+++++|+..||++|.|||.|-+.|-.+.+..++++..++++.+.++++|+.+++|
T Consensus        13 ~~~~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIw   92 (295)
T KOG0807|consen   13 SKLKRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIW   92 (295)
T ss_pred             cccceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCee
Confidence            34489999999999999999999999999999999999999999987788777777888888999999999999999999


Q ss_pred             EEeccceeecC-CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           84 LSLGGFQEKGS-DDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        84 ii~G~~~~~~~-~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +-+|...++.+ .+.+++|+.++|+.+|+++..|.|.||
T Consensus        93 lSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHL  131 (295)
T KOG0807|consen   93 LSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHL  131 (295)
T ss_pred             EEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhce
Confidence            98887776432 346899999999999999999999997

>PRK13981 NAD synthetase; Provisional

Probab=99.88  E-value=2.1e-22  Score=149.67  Aligned_cols=109  Identities=33%  Similarity=0.404  Sum_probs=89.4

Q ss_pred             cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH--cCcE
Q 033342            7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE--SSMW   83 (121)
Q Consensus         7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~--~~~~   83 (121)
                      ||||++|+++. +|++.|++++.+.+++|+++|+|||||||+++ +||...+..... .......+.+..+++.  +++.
T Consensus         1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~l-tGy~~~d~~~~~-~~~~~~~~~l~~La~~~~~~i~   78 (540)
T PRK13981          1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFL-SGYPPEDLLLRP-AFLAACEAALERLAAATAGGPA   78 (540)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhh-cCCChhhhhcCH-HHHHHHHHHHHHHHHhcCCCCE
Confidence            79999999985 89999999999999999999999999999999 898765432111 1122345667777777  7999


Q ss_pred             EEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           84 LSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        84 ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++|...+   .++++||++++|+ +|++++.|+|+||
T Consensus        79 ii~G~~~~---~~~~~yNsa~vi~-~G~i~~~y~K~~L  112 (540)
T PRK13981         79 VLVGHPWR---EGGKLYNAAALLD-GGEVLATYRKQDL  112 (540)
T ss_pred             EEEeCcEe---eCCcEEEEEEEEE-CCeEEEEEeeeeC
Confidence            99997544   5568999999998 7999999999996

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=99.85  E-value=4.9e-21  Score=137.65  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=85.9

Q ss_pred             cccEEEEEEecccc-------CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHH
Q 033342            5 HSVRVAVAQMTSIN-------DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLA   77 (121)
Q Consensus         5 ~~~~ia~vQ~~~~~-------~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   77 (121)
                      .++||+++|+|+..       +..+|++++.++++++.+ ++|+|||||+++ +++..+        .+++..+.++++|
T Consensus       158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~-~~~~~~--------~~~~~~~~l~~~a  227 (391)
T TIGR00546       158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAF-PFDLEN--------SPQKLADRLKLLV  227 (391)
T ss_pred             CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCcccc-ccchhh--------CcHHHHHHHHHHH
Confidence            46999999999853       367899999999998866 899999999998 554321        1223678899999


Q ss_pred             HHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           78 RESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        78 ~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++++.+++|........++++|||+++++|+|+++++|+|+||
T Consensus       228 ~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~L  271 (391)
T TIGR00546       228 LSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKL  271 (391)
T ss_pred             HhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceec
Confidence            99999999997654211112799999999999999999999997

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.82  E-value=4.5e-20  Score=126.11  Aligned_cols=116  Identities=26%  Similarity=0.302  Sum_probs=101.0

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC-chhhhcccCC-----CChHHHHHHHH
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD-ADNIKIAEPL-----DGPIMQGYCSL   76 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~   76 (121)
                      ...+++|++|.... .+..+|++..+..+++|++.+++||||||.++ .||.. +...++++..     .++.++.++++
T Consensus        11 ~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~-~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~v   89 (298)
T KOG0806|consen   11 LPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGL-YGYNFTESFYPYLEDIPDPGCRDPSRQGLSEV   89 (298)
T ss_pred             ccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhcc-ccccccccccchhhhCCCcccCChhHHHhHHH
Confidence            35689999999987 69999999999999999999999999999999 77776 5444555543     36899999999


Q ss_pred             HHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           77 ARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        77 a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      |++++++++.|++++.. .+++.||++.+++++|+.++.|+|.||
T Consensus        90 a~~~~~~~i~g~i~~~~-~~~k~yns~~~~~~~g~l~~~yrk~hl  133 (298)
T KOG0806|consen   90 AERLSCYIIGGSIEEEA-LGDKLYNSCADSSCPGDGLAKYRKNHL  133 (298)
T ss_pred             HhhceEEEecCcchhhc-ccccccCcccccCCCcchhheeeeeEE
Confidence            99999999999988853 467999999999999999999999986

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=99.80  E-value=4.6e-19  Score=131.06  Aligned_cols=106  Identities=25%  Similarity=0.240  Sum_probs=83.3

Q ss_pred             cccEEEEEEecccc-------CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHH
Q 033342            5 HSVRVAVAQMTSIN-------DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLA   77 (121)
Q Consensus         5 ~~~~ia~vQ~~~~~-------~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   77 (121)
                      .++||+++|+|+..       +.++|++++.++++++ .+++|+|||||+++ +++.        ...+++..+.+++++
T Consensus       218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~-p~~~--------~~~~~~~~~~l~~~a  287 (505)
T PRK00302        218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAI-PFLL--------EDLPQAFLKALDDLA  287 (505)
T ss_pred             CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccc-cccc--------ccccHHHHHHHHHHH
Confidence            46999999999753       4678999999998844 67899999999987 4442        112345677899999


Q ss_pred             HHcCcEEEeccceeecCCCC-ceEEEEEEECCCCCEEeeeecCCC
Q 033342           78 RESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        78 ~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++++.+++|...+....++ ++||++++++| |+++++|+|+||
T Consensus       288 ~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~L  331 (505)
T PRK00302        288 REKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHL  331 (505)
T ss_pred             HhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCccccccc
Confidence            99999999997654211123 69999999998 778899999997

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.78  E-value=3.5e-18  Score=113.74  Aligned_cols=113  Identities=27%  Similarity=0.457  Sum_probs=96.8

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc----------------h---hhhccc
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA----------------D---NIKIAE   63 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~----------------~---~~~~~~   63 (121)
                      ++..||+++|.... .|....++++++.+.+|+..|++||||||.++ .||+.-                +   +..-+.
T Consensus        15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfi-GGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI   93 (337)
T KOG0805|consen   15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFI-GGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI   93 (337)
T ss_pred             ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhc-cCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence            56799999999864 78888999999999999999999999999999 777642                1   111223


Q ss_pred             CCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCC
Q 033342           64 PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIH  120 (121)
Q Consensus        64 ~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~h  120 (121)
                      ...++..+.+.++|+++++.+++|.+++   ++..+|-++++++|.|..++.++|+.
T Consensus        94 ev~gpEv~~l~~la~~~~v~lv~G~iEr---eg~TLYCt~~f~~p~g~~lGKHRKlm  147 (337)
T KOG0805|consen   94 EVPGPEVERLAELAKKNNVYLVMGAIER---EGYTLYCTVLFFSPQGQFLGKHRKLM  147 (337)
T ss_pred             cCCChHHHHHHHHhhcCCeEEEEEEEec---cccEEEEEEEEECCCccccccccccc
Confidence            3567889999999999999999998776   77889999999999999999999975

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=99.76  E-value=5e-18  Score=122.88  Aligned_cols=98  Identities=15%  Similarity=0.227  Sum_probs=76.6

Q ss_pred             cEEEEEEeccccC-------HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH
Q 033342            7 VRVAVAQMTSIND-------LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE   79 (121)
Q Consensus         7 ~~ia~vQ~~~~~~-------~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   79 (121)
                      .+|++||+|+.++       .+++++++.+++++|.+.++|+|||||++. +.+..         ..+...+.+++.+  
T Consensus       195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~-p~~~~---------~~~~~~~~l~~~~--  262 (418)
T PRK12291        195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAF-PLALN---------NSPILLDKLKELS--  262 (418)
T ss_pred             CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCccc-ccchh---------hCHHHHHHHHHhc--
Confidence            4999999998643       367899999999998888999999999997 43321         1234667777764  


Q ss_pred             cCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           80 SSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        80 ~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .++.+++|+...   +++++|||++++++ |+ ++.|+|+||
T Consensus       263 ~~~~ii~G~~~~---~~~~~yNS~~vi~~-G~-~~~Y~K~hL  299 (418)
T PRK12291        263 HKITIITGALRV---EDGHIYNSTYIFSK-GN-VQIADKVIL  299 (418)
T ss_pred             cCCcEEEeeeec---cCCceEEEEEEECC-CC-cceecccCC
Confidence            578899997654   44579999999985 87 689999997

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.62  E-value=8.3e-15  Score=98.55  Aligned_cols=117  Identities=24%  Similarity=0.320  Sum_probs=92.2

Q ss_pred             cccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCC-CCC-Cc--hhhhcccCCC-ChHHH
Q 033342            5 HSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYV-GDK-DA--DNIKIAEPLD-GPIMQ   71 (121)
Q Consensus         5 ~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~-~~~-~~--~~~~~~~~~~-~~~~~   71 (121)
                      +.+||+++|..+.        .+.....+++...++.|+..|+.+|+|.|.|..+ .+. .+  .+.+++++.+ ++..+
T Consensus        72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~  151 (387)
T KOG0808|consen   72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK  151 (387)
T ss_pred             cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence            4589999998863        2345667888888998999999999999999722 222 12  2566777754 89999


Q ss_pred             HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .++++|+++++.|+-..+++....+..++|++++|+.+|.++++.+|-|.
T Consensus       152 flqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhi  201 (387)
T KOG0808|consen  152 FLQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHI  201 (387)
T ss_pred             HHHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccC
Confidence            99999999999988775555333455789999999999999999999885

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=3.8e-15  Score=110.16  Aligned_cols=106  Identities=20%  Similarity=0.161  Sum_probs=72.3

Q ss_pred             cccEEEEEEeccccC----HHHHHHHHHH---HHHHHH--HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHH
Q 033342            5 HSVRVAVAQMTSIND----LAANFATCSR---LVKEAA--SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCS   75 (121)
Q Consensus         5 ~~~~ia~vQ~~~~~~----~~~n~~~~~~---~~~~a~--~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   75 (121)
                      ..++|+++|.|++++    .+.-.+.+..   ....+.  ..++|+|||||+++ +         ...........++.+
T Consensus       226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~-p---------~~~~~~~~~~~~~~~  295 (518)
T COG0815         226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETAL-P---------FDLTRHPDALARLAE  295 (518)
T ss_pred             CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEcccccc-c---------cchhhcchHHHHHHH
Confidence            459999999998633    3322222222   333222  37899999999998 2         111122233667888


Q ss_pred             HHHHcCcEEEeccceeecCCCC--ceEEEEEEECCCCCEEeeeecCCC
Q 033342           76 LARESSMWLSLGGFQEKGSDDA--RLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        76 ~a~~~~~~ii~G~~~~~~~~~~--~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .+++.++.+++| .....+.++  ++|||+++++++|+++++|||.||
T Consensus       296 ~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~L  342 (518)
T COG0815         296 ALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHL  342 (518)
T ss_pred             HHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceee
Confidence            888888999999 333211233  589999999999899999999997

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=99.52  E-value=1.8e-13  Score=98.28  Aligned_cols=99  Identities=17%  Similarity=0.066  Sum_probs=71.2

Q ss_pred             ccEEEEEEeccccC-----HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc
Q 033342            6 SVRVAVAQMTSIND-----LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES   80 (121)
Q Consensus         6 ~~~ia~vQ~~~~~~-----~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   80 (121)
                      +.++-.++.++.++     ..+..+++.+.+++|.++++|+|||||+++ +++...         ..   +.+.+.++++
T Consensus       185 p~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~-~~~~~~---------~~---~~~~~~l~~~  251 (388)
T PRK13825        185 PAGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESAL-GFWTPT---------TE---RLWRESLRGS  251 (388)
T ss_pred             CCCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCccc-cccccc---------cc---HHHHHHHHhC
Confidence            45677777776421     124455667777777888999999999998 555321         01   1235556889


Q ss_pred             CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++.+++|+..+   +++++||++++++++|.. ..|+|+||
T Consensus       252 ~i~II~G~~~~---~~~~~yNsa~v~~~~G~~-~~Y~K~~L  288 (388)
T PRK13825        252 DVTVIAGAAVV---DPGGYDNVLVAISAGGGR-ILYRERMP  288 (388)
T ss_pred             CCeEEEEeeec---CCCCceEEEEEEeCCCCe-eeEeeeeC
Confidence            99999997655   456799999999998865 59999886

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=98.86  E-value=3.4e-09  Score=77.30  Aligned_cols=113  Identities=18%  Similarity=0.159  Sum_probs=84.9

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccC--CCChHHHHHHHHHHHc
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP--LDGPIMQGYCSLARES   80 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~   80 (121)
                      ++.++||..++|-| .|++.|.++|.+-+++|++.||.+-+-||+-+ +||.+++.....++  .+.+.+..+.+--.-.
T Consensus         2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi-~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~   80 (706)
T KOG2303|consen    2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEI-TGYGCEDHFLESDTLLHSWEMLAELVESPVTQ   80 (706)
T ss_pred             CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceee-cCCChHHhhccchHHHHHHHHHHHHHcCCCCC
Confidence            46799999999988 89999999999999999999999999999999 99998875322222  1222222222211234


Q ss_pred             CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++.+.+| ++..  ..+..||+.+++- +|+|+.+..|+-|
T Consensus        81 ~il~diG-mPv~--hr~~ryNCrv~~~-n~kil~IRpKm~l  117 (706)
T KOG2303|consen   81 DILCDIG-MPVM--HRNVRYNCRVLFL-NRKILLIRPKMWL  117 (706)
T ss_pred             CeeEecC-Cchh--hhhhhhccceeec-CCeEEEEccccee
Confidence            6778888 5543  5567899999886 8999998888743

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=95.06  E-value=0.44  Score=33.38  Aligned_cols=72  Identities=11%  Similarity=0.062  Sum_probs=44.5

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+.+|||+++.|-.+. ...            .......++.-|.+++++++.-...- ...+..++=.+.+++|+
T Consensus       161 ~~r~la~~GAdill~ps~~~-~~~------------~~~w~~~~~aRA~En~~~vv~aN~~G-~~~~~~~~G~S~ivdP~  226 (291)
T cd07565         161 IARECAYKGAELIIRIQGYM-YPA------------KDQWIITNKANAWCNLMYTASVNLAG-FDGVFSYFGESMIVNFD  226 (291)
T ss_pred             HHHHHHHCCCeEEEECCcCC-CCc------------chHHHHHHHHHHHhcCcEEEEecccc-cCCCceeeeeeEEECCC
Confidence            44445568999999997553 111            11233456777889999986443221 11223455678889999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       227 G~ila~  232 (291)
T cd07565         227 GRTLGE  232 (291)
T ss_pred             CCEEEe
Confidence            998754

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=94.48  E-value=0.098  Score=35.84  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             HHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342           35 ASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS  114 (121)
Q Consensus        35 ~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~  114 (121)
                      .+.||+|+.+|-.|. .-....           -+--.++.-|-+++++++...-.-++++...-|--+++++|-|.+++
T Consensus       183 R~~gA~iLtyPSAFT-~~TG~A-----------HWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva  250 (295)
T KOG0807|consen  183 RKMGAQILTYPSAFT-IKTGEA-----------HWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVA  250 (295)
T ss_pred             HHcCCcEEeccchhh-hcccHH-----------HHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhhe
Confidence            367999999999886 111111           11234567788999999876433333334456888999999999998


Q ss_pred             eeecC
Q 033342          115 TYRKI  119 (121)
Q Consensus       115 ~y~K~  119 (121)
                      .+.-.
T Consensus       251 ~~se~  255 (295)
T KOG0807|consen  251 RCSER  255 (295)
T ss_pred             ecCCC
Confidence            87643

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=93.88  E-value=0.7  Score=31.51  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+..+.+|+|+|++|=.+. ......        ........++.-|.+++++++.....-. ..+..+.=.+.+++|+|
T Consensus       149 ~r~l~~~gadlil~p~~~~-~~~~~~--------~~~~~~~~~~~rA~e~~~~vv~~n~~g~-~~~~~~~G~S~i~~p~G  218 (261)
T cd07585         149 VRATALLGAEILFAPHATP-GTTSPK--------GREWWMRWLPARAYDNGVFVAACNGVGR-DGGEVFPGGAMILDPYG  218 (261)
T ss_pred             HHHHHHCCCCEEEECCccC-CCCCcc--------hHHHHHHHhHHHHhhcCeEEEEeccccc-CCCceecceEEEECCCC
Confidence            4555578999999995443 111000        1112233456677889998864422211 11112334568889999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       219 ~v~~~  223 (261)
T cd07585         219 RVLAE  223 (261)
T ss_pred             CEEec
Confidence            88753

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=93.72  E-value=0.84  Score=31.26  Aligned_cols=77  Identities=13%  Similarity=0.074  Sum_probs=44.6

Q ss_pred             HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342           33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI  112 (121)
Q Consensus        33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i  112 (121)
                      .....|+|+|+.|=.+...+ ...     ...............|.+++++++.-...- ...+..++-.+.+++|+|++
T Consensus       154 ~~~~~ga~lil~ps~~~~~~-~~~-----~~~~~~~~~~~~~~rA~e~~~~vv~an~~G-~~~~~~~~G~S~ii~p~G~i  226 (269)
T cd07586         154 LLALDGADVIFIPANSPARG-VGG-----DFDNEENWETLLKFYAMMNGVYVVFANRVG-VEDGVYFWGGSRVVDPDGEV  226 (269)
T ss_pred             HHHHCCCCEEEEeCCCcccc-Ccc-----ccchhHHHHHHHHHHHHHhCCeEEEEeeec-CcCCceEeCCcEEECCCCCE
Confidence            34578999999996654111 000     000011234556777889999886554322 11223455567889999999


Q ss_pred             Eeee
Q 033342          113 RSTY  116 (121)
Q Consensus       113 ~~~y  116 (121)
                      +...
T Consensus       227 l~~~  230 (269)
T cd07586         227 VAEA  230 (269)
T ss_pred             EEec
Confidence            7543

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07576 R-amidase_like Pseudomonas sp

Probab=93.66  E-value=1.3  Score=29.95  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+.....|||+|+.|=.+. ..+.            ......++..|.+++++++.....- ...+..++=.+.+++|+|
T Consensus       151 ~~~~~~~gadii~~p~~~~-~~~~------------~~~~~~~~~rA~en~~~vv~an~~G-~~~~~~~~G~S~i~~p~G  216 (254)
T cd07576         151 VRALALAGADLVLVPTALM-EPYG------------FVARTLVPARAFENQIFVAYANRCG-AEDGLTYVGLSSIAGPDG  216 (254)
T ss_pred             HHHHHHCCCCEEEECCccC-CCcc------------hhhhhhhHHHHHhCCCEEEEEcccC-CCCCceeeeeeEEECCCC
Confidence            3444568999999985443 1111            1123345667889999986543221 112223445578889999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       217 ~il~~  221 (254)
T cd07576         217 TVLAR  221 (254)
T ss_pred             CEeEe
Confidence            98643

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=93.41  E-value=0.56  Score=32.01  Aligned_cols=72  Identities=17%  Similarity=0.239  Sum_probs=40.9

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCc-eEEEEEEECC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR-LCNTHVLLDD  108 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~-~~Ns~~~i~~  108 (121)
                      ..+.++.+|+|+|++|=.+. ....           ........+.-|.+++++++.....-. ..++. ++=.+.+++|
T Consensus       161 ~~r~~~~~gadli~~p~~~~-~~~~-----------~~~~~~~~~~rA~e~~~~vv~~n~~G~-~~~~~~~~G~S~i~~p  227 (265)
T cd07572         161 LARALARQGADILTVPAAFT-MTTG-----------PAHWELLLRARAIENQCYVVAAAQAGD-HEAGRETYGHSMIVDP  227 (265)
T ss_pred             HHHHHHHCCCCEEEECCCCC-CCcc-----------hHHHHHHHHHHHHhcCCEEEEEccccc-CCCCCeecceeEEECC
Confidence            44556678999999995432 1111           111223345667889998865532211 11222 2335788899


Q ss_pred             CCCEEe
Q 033342          109 AGNIRS  114 (121)
Q Consensus       109 ~G~i~~  114 (121)
                      +|+++.
T Consensus       228 ~G~il~  233 (265)
T cd07572         228 WGEVLA  233 (265)
T ss_pred             CcHHHh
Confidence            998763

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=93.39  E-value=1.3  Score=30.11  Aligned_cols=71  Identities=10%  Similarity=0.117  Sum_probs=40.6

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceE-EEEEEECC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLC-NTHVLLDD  108 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~-Ns~~~i~~  108 (121)
                      ..+.+...|+|+++.|=.+. ..            .........+.-|.+++++++.....-  ..++..+ =.+.+++|
T Consensus       154 ~~r~~~~~gadll~~ps~~~-~~------------~~~~~~~~~~~rA~En~~~vv~~n~~g--~~~~~~~~G~S~ii~p  218 (258)
T cd07584         154 VARILTLKGAEVIFCPSAWR-EQ------------DADIWDINLPARALENTVFVAAVNRVG--NEGDLVLFGKSKILNP  218 (258)
T ss_pred             HHHHHHHCCCcEEEECCccC-CC------------CchHHHHHHHHHHHhCCcEEEEECccc--cCCCceecceeEEECC
Confidence            34555678999999984332 11            011122234556789999987422111  1222233 46788999


Q ss_pred             CCCEEee
Q 033342          109 AGNIRST  115 (121)
Q Consensus       109 ~G~i~~~  115 (121)
                      +|+++..
T Consensus       219 ~G~il~~  225 (258)
T cd07584         219 RGQVLAE  225 (258)
T ss_pred             CCceeee
Confidence            9998753

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional

Probab=93.38  E-value=0.47  Score=32.52  Aligned_cols=57  Identities=14%  Similarity=0.098  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342           19 DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL   86 (121)
Q Consensus        19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~   86 (121)
                      +.....+.+.+..+...+.|..+++|||..- ....          .-.++..-.-.+|.+.+++|+.
T Consensus       120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTR-s~~g----------~l~~Fk~Ga~~lA~~~~~PIvP  176 (245)
T PRK15018        120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTR-SRGR----------GLLPFKTGAFHAAIAAGVPIIP  176 (245)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEECCccC-CCCC----------CCCCccHHHHHHHHHcCCCEEE
Confidence            4455566666666666677889999999985 2111          1223556667778888888754

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=93.01  E-value=1.2  Score=30.01  Aligned_cols=70  Identities=13%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342           32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN  111 (121)
Q Consensus        32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~  111 (121)
                      +.+...|+|+|+.|=......             ...........|.+++++++.....-. ..+..++-.+.+++|+|+
T Consensus       153 ~~~~~~g~dli~~ps~~~~~~-------------~~~~~~~~~~~A~e~~~~vv~~n~~G~-~~~~~~~G~S~i~~p~G~  218 (253)
T cd07197         153 RELALKGADIILVPAAWPTAR-------------REHWELLLRARAIENGVYVVAANRVGE-EGGLEFAGGSMIVDPDGE  218 (253)
T ss_pred             HHHHHCCCcEEEECCcCCCcc-------------hHHHHHHHHHHHHHhCCeEEEecCCCC-CCCccccceeEEECCCCc
Confidence            344577999999998765111             123445567788899998865533221 123345566788999998


Q ss_pred             EEee
Q 033342          112 IRST  115 (121)
Q Consensus       112 i~~~  115 (121)
                      ++..
T Consensus       219 ~~~~  222 (253)
T cd07197         219 VLAE  222 (253)
T ss_pred             eeee
Confidence            8653

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=92.79  E-value=0.99  Score=31.93  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=43.6

Q ss_pred             HHHHHHHC-CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECC
Q 033342           30 LVKEAASA-GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDD  108 (121)
Q Consensus        30 ~~~~a~~~-~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~  108 (121)
                      ..+..+.+ |+|+++.|=.|. .....           ......++.-|.+++++++.-...    +...++-.+.+++|
T Consensus       188 ~~r~la~~~GAdlil~paaw~-~~~~~-----------~~w~~l~~arA~eN~~~vi~~N~~----g~~~~~G~S~iv~P  251 (299)
T cd07567         188 PALELVKKLGVDDIVFPTAWF-SELPF-----------LTAVQIQQAWAYANGVNLLAANYN----NPSAGMTGSGIYAG  251 (299)
T ss_pred             HHHHHHHhCCCCEEEECCccC-CCCCc-----------hhHHHHHHHHHHHcCceEEEecCC----CCcCccccceEEcC
Confidence            34444456 999999995443 11110           122345677889999998654322    21234466788999


Q ss_pred             C-CCEEeee
Q 033342          109 A-GNIRSTY  116 (121)
Q Consensus       109 ~-G~i~~~y  116 (121)
                      + |+++...
T Consensus       252 ~~G~v~a~~  260 (299)
T cd07567         252 RSGALVYHY  260 (299)
T ss_pred             CCCcEEEEe
Confidence            9 9998654

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=92.49  E-value=0.91  Score=30.94  Aligned_cols=72  Identities=17%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342           32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN  111 (121)
Q Consensus        32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~  111 (121)
                      +..+..|+|+++.|=.+. ....          ........++..|.+++++++.-...- ...+..+.=.+.+++|+|+
T Consensus       156 r~~~~~ga~ll~~ps~~~-~~~~----------~~~~~~~~~~~rA~en~~~vv~~n~~g-~~~~~~~~G~S~ii~p~G~  223 (261)
T cd07570         156 AELALAGADLILNLSASP-FHLG----------KQDYRRELVSSRSARTGLPYVYVNQVG-GQDDLVFDGGSFIADNDGE  223 (261)
T ss_pred             HHHHHcCCcEEEEeCCCc-cccC----------cHHHHHHHHHHHHHHhCCcEEEEeCCC-CCceEEEECceEEEcCCCC
Confidence            344567999999995542 1110          011123446778889999886554322 1111223445788999999


Q ss_pred             EEee
Q 033342          112 IRST  115 (121)
Q Consensus       112 i~~~  115 (121)
                      ++..
T Consensus       224 vl~~  227 (261)
T cd07570         224 LLAE  227 (261)
T ss_pred             EEEe
Confidence            8753

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=92.46  E-value=2.3  Score=29.21  Aligned_cols=79  Identities=10%  Similarity=0.101  Sum_probs=43.3

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeec---CCCCceEEEEEEEC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKG---SDDARLCNTHVLLD  107 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~---~~~~~~~Ns~~~i~  107 (121)
                      .+..+.+|+|+|+.|=.+....+..      ...........+..-|.+++++++.....-..   ..+..++=.+.+++
T Consensus       159 ~r~~a~~ga~lil~ps~~~~~~~~~------~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~  232 (279)
T TIGR03381       159 ARAMALMGAEVLFYPTAIGSEPHDP------DLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIAD  232 (279)
T ss_pred             HHHHHHcCCCEEEecCccCCCCccc------ccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEEC
Confidence            3555578999999986543111110      00011223344555688899988644322110   01224556788999


Q ss_pred             CCCCEEee
Q 033342          108 DAGNIRST  115 (121)
Q Consensus       108 ~~G~i~~~  115 (121)
                      |+|+++..
T Consensus       233 p~G~il~~  240 (279)
T TIGR03381       233 HTGELVAE  240 (279)
T ss_pred             CCCcEeec
Confidence            99998753

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=92.30  E-value=2.3  Score=30.76  Aligned_cols=72  Identities=8%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+.+|||+|+-|-.+. .  .          ........++..|.+++++++.-...-. .....++=.+.+++|+
T Consensus       174 ~~R~la~~GAelii~psa~~-~--~----------~~~~~~~~~rarA~eN~~yVv~aN~~G~-~~~~~~~G~S~Ivdp~  239 (345)
T PRK13286        174 IWRDCAMKGAELIVRCQGYM-Y--P----------AKEQQVLVAKAMAWANNCYVAVANAAGF-DGVYSYFGHSAIIGFD  239 (345)
T ss_pred             HHHHHHHcCCeEEEEccccC-C--C----------chHHHHHHHHHHHHHCCCEEEEEecccc-cCCceeeeeEEEECCC
Confidence            44555678999999885443 1  1          0112334466778899999865533321 1222455668899999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       240 G~vla~  245 (345)
T PRK13286        240 GRTLGE  245 (345)
T ss_pred             CcEEEe
Confidence            998754

>PLN02798 nitrilase

Probab=91.98  E-value=1.7  Score=30.29  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=41.8

Q ss_pred             HHHHHH-HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECC
Q 033342           30 LVKEAA-SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDD  108 (121)
Q Consensus        30 ~~~~a~-~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~  108 (121)
                      ..+.++ ..|+|+|+.|=.+. ....           .......++.-|.+++++++.-...-....+..++=.+.+++|
T Consensus       171 ~~r~~a~~~Gadlil~ps~~~-~~~~-----------~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p  238 (286)
T PLN02798        171 LYQQLRFEHGAQVLLVPSAFT-KPTG-----------EAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDP  238 (286)
T ss_pred             HHHHHHHhCCCcEEEECCcCC-CCCc-----------HHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECC
Confidence            345455 78999999996543 1100           0112233456677888988653221111112234456788899


Q ss_pred             CCCEEee
Q 033342          109 AGNIRST  115 (121)
Q Consensus       109 ~G~i~~~  115 (121)
                      +|+++..
T Consensus       239 ~G~il~~  245 (286)
T PLN02798        239 WGTVVAR  245 (286)
T ss_pred             Cccchhh
Confidence            9988643

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=91.95  E-value=2.9  Score=28.67  Aligned_cols=75  Identities=12%  Similarity=0.137  Sum_probs=41.9

Q ss_pred             HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCC-ceEEEEEEECCCC
Q 033342           32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAG  110 (121)
Q Consensus        32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~G  110 (121)
                      +..+.+|+|+|+.|=.+. ......      ..............|.+++++++.-...-.  +++ .++=.+.+++|+|
T Consensus       154 r~~~~~ga~li~~ps~~~-~~~~~~------~~~~~~~~~~~~arA~en~~~vv~~n~~G~--~~~~~~~G~S~ii~p~G  224 (268)
T cd07580         154 RLLALQGADIVCVPTNWV-PMPRPP------EGGPPMANILAMAAAHSNGLFIACADRVGT--ERGQPFIGQSLIVGPDG  224 (268)
T ss_pred             HHHHHcCCCEEEEcCccc-ccCCcc------cccCcHHHHhhHHHHhhCCcEEEEEeeeee--ccCceEeeeeEEECCCC
Confidence            445578999999987664 111100      000111122345567789998865432221  222 3445679999999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       225 ~~~~~  229 (268)
T cd07580         225 WPLAG  229 (268)
T ss_pred             Ceeee
Confidence            98754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=91.67  E-value=1.6  Score=31.72  Aligned_cols=71  Identities=11%  Similarity=-0.019  Sum_probs=41.3

Q ss_pred             HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC---------------CC
Q 033342           32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS---------------DD   96 (121)
Q Consensus        32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~---------------~~   96 (121)
                      +..+.+|+|||++|=.+.  +...          ...+...++.-|.+++++++.....-...               ..
T Consensus       235 r~la~~GAdiil~Psa~~--~~~~----------~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~  302 (363)
T cd07587         235 LMYGLNGAEIVFNPSATV--GALS----------EPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDF  302 (363)
T ss_pred             HHHHHcCCcEEEECCCcC--CCCc----------hHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccc
Confidence            334567999999995543  1110          01223445667889999886432111000               01


Q ss_pred             CceEEEEEEECCCCCEEe
Q 033342           97 ARLCNTHVLLDDAGNIRS  114 (121)
Q Consensus        97 ~~~~Ns~~~i~~~G~i~~  114 (121)
                      ..++-.+.+++|+|+++.
T Consensus       303 ~~f~G~S~Ii~P~G~il~  320 (363)
T cd07587         303 GHFYGSSYVAAPDGSRTP  320 (363)
T ss_pred             ccccceeEEECCCCCCcc
Confidence            246678999999998764

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=91.38  E-value=2  Score=29.14  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+....+|+|+++.|=.+.  ...           ..........-|.+++++++.-...-. ..+..++=.+.+++|+
T Consensus       151 ~~r~~~~~ga~ll~~ps~~~--~~~-----------~~~~~~~~~~rA~en~~~vv~~n~~G~-~~~~~~~G~S~ii~p~  216 (253)
T cd07583         151 LFRKLALEGAEILFVPAEWP--AAR-----------IEHWRTLLRARAIENQAFVVACNRVGT-DGGNEFGGHSMVIDPW  216 (253)
T ss_pred             HHHHHHHcCCcEEEECCCCC--CCc-----------hHHHHHHHHHHHHHhCCEEEEEcCccc-CCCceecceeEEECCC
Confidence            44555678999999985432  111           111222345667888988864322211 1222344556788999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       217 G~il~~  222 (253)
T cd07583         217 GEVLAE  222 (253)
T ss_pred             chhhee
Confidence            998754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=91.34  E-value=2.9  Score=28.49  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=39.5

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeec---CCCCceEEEEEEEC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKG---SDDARLCNTHVLLD  107 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~---~~~~~~~Ns~~~i~  107 (121)
                      .+..+.+|||+|+.|=.+. ..               .....++.-|.+++++++.....-..   ..+..+.-.+.+++
T Consensus       150 ~r~~~~~Gadli~~ps~~~-~~---------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~  213 (259)
T cd07577         150 ARTLALKGADIIAHPANLV-LP---------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITS  213 (259)
T ss_pred             HHHHHHcCCCEEEECCccC-Cc---------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEEC
Confidence            3445578999999996543 10               01123456678889988643211100   01112345678999


Q ss_pred             CCCCEEee
Q 033342          108 DAGNIRST  115 (121)
Q Consensus       108 ~~G~i~~~  115 (121)
                      |+|+++..
T Consensus       214 p~G~i~~~  221 (259)
T cd07577         214 PKGEVLAR  221 (259)
T ss_pred             CCCCEEee
Confidence            99998753

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=90.94  E-value=3.9  Score=28.23  Aligned_cols=82  Identities=11%  Similarity=0.051  Sum_probs=43.3

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC---CCCceEEEEEEE
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS---DDARLCNTHVLL  106 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~---~~~~~~Ns~~~i  106 (121)
                      ..+.....|+|++++|=.+...+...    ..-..........++..|.+++++++.-...-...   .+..++=.+.++
T Consensus       159 ~~r~~~~~gadlil~ps~~~~~~~~~----~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i~  234 (284)
T cd07573         159 AARLMALQGAEILFYPTAIGSEPQEP----PEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIA  234 (284)
T ss_pred             HHHHHHHCCCCEEEecCcccCCCCCc----cccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeeceeEEE
Confidence            34555678999999995542111100    00000112223445566888999886443221000   122344567889


Q ss_pred             CCCCCEEee
Q 033342          107 DDAGNIRST  115 (121)
Q Consensus       107 ~~~G~i~~~  115 (121)
                      +|+|+++..
T Consensus       235 ~p~G~i~~~  243 (284)
T cd07573         235 DPFGEILAQ  243 (284)
T ss_pred             CCCCCeeec
Confidence            999998753

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases

Probab=90.93  E-value=1.5  Score=26.29  Aligned_cols=51  Identities=20%  Similarity=0.156  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342           25 ATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL   86 (121)
Q Consensus        25 ~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~   86 (121)
                      ....+.+.++.++|..+++|||... . ...         ...++...+..+|.+.++.|+.
T Consensus        76 ~~~~~~~~~~l~~g~~v~ifPeG~~-~-~~~---------~~~~f~~g~~~la~~~~~pvvp  126 (130)
T TIGR00530        76 ATALKAAIEVLKQGRSIGVFPEGTR-S-RGR---------DILPFKKGAFHIAIKAGVPILP  126 (130)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCC-C-CCC---------CCCCcchhHHHHHHHcCCCEEe
Confidence            3444455556678889999999975 2 111         1123345667788888888853

1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=90.71  E-value=4.1  Score=28.20  Aligned_cols=74  Identities=9%  Similarity=0.038  Sum_probs=40.6

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCC--CCceEEEEEEEC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSD--DARLCNTHVLLD  107 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~--~~~~~Ns~~~i~  107 (121)
                      ..+..+..|+|+++.|=.+. .+...           .......+.-|.+++++++.-...-....  ...++-.+.+++
T Consensus       170 ~~r~la~~Ga~li~~ps~~~-~~~~~-----------~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ii~  237 (287)
T cd07568         170 GWRALGLNGAEIVFNPSATV-AGLSE-----------YLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFVD  237 (287)
T ss_pred             HHHHHHHCCCeEEEECCcCC-CCCch-----------hhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeEEEC
Confidence            34455578999999985443 22110           01112335557788888763211110000  124556778999


Q ss_pred             CCCCEEee
Q 033342          108 DAGNIRST  115 (121)
Q Consensus       108 ~~G~i~~~  115 (121)
                      |+|+++..
T Consensus       238 p~G~il~~  245 (287)
T cd07568         238 PRGQFVAS  245 (287)
T ss_pred             CCceEEEe
Confidence            99998754

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PRK13981 NAD synthetase; Provisional

Probab=90.30  E-value=2.1  Score=32.69  Aligned_cols=74  Identities=18%  Similarity=0.139  Sum_probs=43.0

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+..|+|+|+.|=.+.   +...        ........++..|.+++++++.-...-. ..+..+.-.+.+++|+
T Consensus       153 ~~r~la~~Gadlil~psa~~---~~~~--------~~~~~~~~~~~rA~En~~~vv~aN~vG~-~~~~~f~G~S~i~dp~  220 (540)
T PRK13981        153 PAETLAEAGAELLLVPNASP---YHRG--------KPDLREAVLRARVRETGLPLVYLNQVGG-QDELVFDGASFVLNAD  220 (540)
T ss_pred             HHHHHHHCCCcEEEEcCCCc---ccCC--------cHHHHHHHHHHHHHHhCCeEEEEecccC-CCceEEeCceEEECCC
Confidence            34445578999999994332   1100        0112234567788999998865432211 1222334567889999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       221 G~il~~  226 (540)
T PRK13981        221 GELAAR  226 (540)
T ss_pred             CCEeee
Confidence            998753

>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []

Probab=90.28  E-value=1.2  Score=26.77  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342           24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus        24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      .....+.+.+..+.+--+++|||.......      .    . .+...-...++.+.+++|+
T Consensus        77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~~~~------~----~-~~~~~G~~~~a~~~~~~iv  127 (132)
T PF01553_consen   77 NRKALKDIKEILRKGGSIVIFPEGTRSRSG------E----L-LPFKKGAFHIALKAKVPIV  127 (132)
T ss_dssp             HHHHHHHHHHHHHC---EEE-TT-S---B------------B-----HHHHHHHHHH-----
T ss_pred             cchhHHHHHHHhhhcceeeecCCccCcCCC------c----c-CCccHHHHHHHHHcCCccc
Confidence            334444444455555559999999752111      0    1 2344556666777777664

This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=90.22  E-value=3.1  Score=28.66  Aligned_cols=68  Identities=16%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             HHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCC-CceEEEEEEECCCCCEE
Q 033342           35 ASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDD-ARLCNTHVLLDDAGNIR  113 (121)
Q Consensus        35 ~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~-~~~~Ns~~~i~~~G~i~  113 (121)
                      +..|+++|+.|=.+. ....           .......+..-|-+++++++.....-. ..+ ..++-.+++++|+|+++
T Consensus       163 a~~Gaeii~~p~a~~-~~~~-----------~~~w~~l~~arA~en~~~vv~~n~~g~-~~~~~~~~G~S~i~~p~G~v~  229 (274)
T COG0388         163 ALGGAELLLVPAAWP-AERG-----------LDHWEVLLRARAIENQVYVLAANRAGF-DGAGLEFCGHSAIIDPDGEVL  229 (274)
T ss_pred             HhcCCeEEEEcCCCC-Cccc-----------HHHHHHHHHHHhhhcCceEEEecccCC-CCCccEEecceEEECCCccEE
Confidence            455899999999886 2221           112223366677889999976643331 122 46788899999999876


Q ss_pred             ee
Q 033342          114 ST  115 (121)
Q Consensus       114 ~~  115 (121)
                      +.
T Consensus       230 ~~  231 (274)
T COG0388         230 AE  231 (274)
T ss_pred             ee
Confidence            53

>PLN02747 N-carbamolyputrescine amidase

Probab=89.02  E-value=6  Score=27.60  Aligned_cols=80  Identities=10%  Similarity=0.051  Sum_probs=43.6

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeec-----CC--CCceEEE
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKG-----SD--DARLCNT  102 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~-----~~--~~~~~Ns  102 (121)
                      ..+..+.+|+|+|+.|=.+....+..     ... ........++..|.+++++++.-...-..     ..  ...++=.
T Consensus       164 ~~r~~~~~Ga~lil~ps~~~~~~~~~-----~~~-~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~  237 (296)
T PLN02747        164 AARAMVLQGAEVLLYPTAIGSEPQDP-----GLD-SRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGG  237 (296)
T ss_pred             HHHHHHHCCCCEEEEeCccCCCCccc-----ccc-hHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEeee
Confidence            34555678999999987653111110     000 01223344567788889887554221100     01  1234456


Q ss_pred             EEEECCCCCEEee
Q 033342          103 HVLLDDAGNIRST  115 (121)
Q Consensus       103 ~~~i~~~G~i~~~  115 (121)
                      +.+++|+|+++..
T Consensus       238 S~i~~p~G~vl~~  250 (296)
T PLN02747        238 SFIAGPTGEIVAE  250 (296)
T ss_pred             eEEECCCCCEeec
Confidence            7888999998754

>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like

Probab=88.88  E-value=1.4  Score=28.78  Aligned_cols=27  Identities=30%  Similarity=0.293  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHC--CCcEEEccCCcc
Q 033342           23 NFATCSRLVKEAASA--GAKLLCFPENFS   49 (121)
Q Consensus        23 n~~~~~~~~~~a~~~--~~dlvv~PE~~~   49 (121)
                      ..+.+.+.++...+.  +..+++|||..-
T Consensus        87 d~~~i~~~~~~l~~~~~~~~lviFPEGTr  115 (193)
T cd07990          87 DEKTIKRQLKRLKDSPEPFWLLIFPEGTR  115 (193)
T ss_pred             hHHHHHHHHHHHhcCCCCcEEEEeCcccC
Confidence            344555555554443  788999999986

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=88.53  E-value=5.7  Score=27.04  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+.+|+|+++.|=.+. .+...           .   ..+..-|.+++++++.....-. ..+..++=.+.+++|+
T Consensus       154 ~~r~~~~~ga~ll~~ps~~~-~~~~~-----------~---~~~~~rA~en~~~vv~an~~G~-~~~~~~~G~S~ii~p~  217 (258)
T cd07578         154 TARLLALGGADVICHISNWL-AERTP-----------A---PYWINRAFENGCYLIESNRWGL-ERGVQFSGGSCIIEPD  217 (258)
T ss_pred             HHHHHHHcCCCEEEEcCCCC-CCCCc-----------c---hHHHHhhhcCCeEEEEecceec-cCCcceeeEEEEECCC
Confidence            34445578999999986543 11110           0   1123456788888765533211 1222345567899999


Q ss_pred             CCEEe
Q 033342          110 GNIRS  114 (121)
Q Consensus       110 G~i~~  114 (121)
                      |+++.
T Consensus       218 G~il~  222 (258)
T cd07578         218 GTIQA  222 (258)
T ss_pred             CcEee
Confidence            98864

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN00202 beta-ureidopropionase

Probab=88.49  E-value=4.6  Score=29.89  Aligned_cols=71  Identities=11%  Similarity=0.036  Sum_probs=41.5

Q ss_pred             HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC--------CC-------
Q 033342           32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS--------DD-------   96 (121)
Q Consensus        32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~--------~~-------   96 (121)
                      +..+..|+|+|+.|=.+.  +...          ...+...++.-|.+++++++.-...-...        ++       
T Consensus       256 r~la~~GAdiIl~Psa~~--~~~~----------~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~  323 (405)
T PLN00202        256 LAFGLNGAEIVFNPSATV--GDLS----------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF  323 (405)
T ss_pred             HHHHHCCCcEEEECCCCC--CccC----------HHHHHHHHHHHHHhcCCEEEEecccccccccccccccccccccccc
Confidence            333567999999995543  1110          01223445677888898885443221000        00       


Q ss_pred             CceEEEEEEECCCCCEEe
Q 033342           97 ARLCNTHVLLDDAGNIRS  114 (121)
Q Consensus        97 ~~~~Ns~~~i~~~G~i~~  114 (121)
                      ..++=.+.+++|+|+++.
T Consensus       324 ~~f~G~S~Iv~P~G~vla  341 (405)
T PLN00202        324 GHFYGSSHFSAPDASCTP  341 (405)
T ss_pred             ccccceeEEEcCCCCEec
Confidence            236677899999999864

>PLN02504 nitrilase

Probab=88.05  E-value=5  Score=28.98  Aligned_cols=69  Identities=14%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecccee---------------ecC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQE---------------KGS   94 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~---------------~~~   94 (121)
                      ..+..+.+|+|+++.|=.+.                ...+...++..|.+++++++.....-               ...
T Consensus       194 ~~r~la~~Gadii~~p~~~~----------------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~  257 (346)
T PLN02504        194 LRTAMYAKGIEIYCAPTADS----------------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEE  257 (346)
T ss_pred             HHHHHHHCCCeEEEECCCCC----------------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccc
Confidence            34445578999999984321                01223455667889999986443220               000


Q ss_pred             ----CCCceEEEEEEECCCCCEEe
Q 033342           95 ----DDARLCNTHVLLDDAGNIRS  114 (121)
Q Consensus        95 ----~~~~~~Ns~~~i~~~G~i~~  114 (121)
                          ..-.++=.+.+++|+|+++.
T Consensus       258 ~~~~~~~~~~G~S~IvdP~G~vla  281 (346)
T PLN02504        258 DLTPDSIVCAGGSVIISPSGTVLA  281 (346)
T ss_pred             cccccccccCcceEEECCCCCEec
Confidence                01123456899999999874

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=87.94  E-value=5.9  Score=26.82  Aligned_cols=70  Identities=19%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+.+|+|+|+.|=.+. ....          ............|.+++++++.-...     ++...=.+.+++|+
T Consensus       155 ~~~~~~~~ga~lil~ps~~~-~~~~----------~~~~~~~~~~~rA~en~~~vv~~n~~-----g~~~~G~S~i~~p~  218 (255)
T cd07581         155 LARALALAGADVIVVPAAWV-AGPG----------KEEHWETLLRARALENTVYVAAAGQA-----GPRGIGRSMVVDPL  218 (255)
T ss_pred             HHHHHHHCCCcEEEECCccc-CCCC----------chHHHHHHHHHHHHHhCCEEEEEcCc-----CCCcccceEEECCC
Confidence            34555678999999985442 1110          11122344566678889887644211     11233346778889


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       219 G~i~~~  224 (255)
T cd07581         219 GVVLAD  224 (255)
T ss_pred             cceeee
Confidence            987654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=87.77  E-value=1.7  Score=30.17  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccCCC------ChHHHHHHHHHHHcCcEEEeccce
Q 033342           20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEPLD------GPIMQGYCSLARESSMWLSLGGFQ   90 (121)
Q Consensus        20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~~~------~~~~~~l~~~a~~~~~~ii~G~~~   90 (121)
                      ..+-++++...+++..+ ..++-+.|= |+.+.+..+.   +.++...++      -.+.+.+...|+++.++.-.|  +
T Consensus       155 CPdELeKm~~~Vd~i~~-~~~~~~~Pl-FIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~g--p  230 (280)
T KOG2792|consen  155 CPDELEKMSAVVDEIEA-KPGLPPVPL-FISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTG--P  230 (280)
T ss_pred             ChHHHHHHHHHHHHHhc-cCCCCccce-EEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccC--C
Confidence            45677888888886633 333333354 4335554332   222222222      245788999999999999777  3


Q ss_pred             eecCCCC---ceEEEEEEECCCCCEEeeeec
Q 033342           91 EKGSDDA---RLCNTHVLLDDAGNIRSTYRK  118 (121)
Q Consensus        91 ~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K  118 (121)
                      +. .+.+   ...--+++++|+|+.+..|-+
T Consensus       231 ~d-~~~DYlVDHSi~mYLidPeg~Fvd~~Gr  260 (280)
T KOG2792|consen  231 KD-EDQDYLVDHSIFMYLIDPEGEFVDYYGR  260 (280)
T ss_pred             CC-CCCCeeeeeeEEEEEECCCcceehhhcc
Confidence            31 1221   123456899999999877654

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=87.57  E-value=7.7  Score=27.09  Aligned_cols=73  Identities=14%  Similarity=0.068  Sum_probs=41.1

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCC---CceE-EEEEE
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDD---ARLC-NTHVL  105 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~---~~~~-Ns~~~  105 (121)
                      ..+..+.+|+|+|+.|=.+. ....           .......++.-|.+++++++.....-. ...   +..| -.+.+
T Consensus       181 ~~r~la~~Gadlil~psa~~-~~~~-----------~~~~~~~~~arA~en~~~vv~aN~~G~-~~~~~~~~~~~G~S~i  247 (294)
T cd07582         181 VARGLAMNGAEVLLRSSSEV-PSVE-----------LDPWEIANRARALENLAYVVSANSGGI-YGSPYPADSFGGGSMI  247 (294)
T ss_pred             HHHHHHHCCCcEEEEcCCCC-CCcc-----------hhhHHHHHHHHHHhcCCEEEEeccccc-CcccccCceecceeEE
Confidence            34555678999999887654 1110           111123446677889998874322110 011   1223 45678


Q ss_pred             ECCCCCEEee
Q 033342          106 LDDAGNIRST  115 (121)
Q Consensus       106 i~~~G~i~~~  115 (121)
                      ++|+|+++..
T Consensus       248 vdp~G~vla~  257 (294)
T cd07582         248 VDYKGRVLAE  257 (294)
T ss_pred             ECCCCCEEEe
Confidence            8999998753

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=86.72  E-value=6.1  Score=27.03  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342           37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST  115 (121)
Q Consensus        37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~  115 (121)
                      .++|+++.|=.+.  ...           .......++.-|.+++++++.-...-....+..++=.+.+++|+|+++..
T Consensus       154 ~gad~i~~~s~~~--~~~-----------~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~  219 (256)
T PRK10438        154 NDYDLALYVANWP--APR-----------SLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIAT  219 (256)
T ss_pred             cCCCEEEEecCCC--CCc-----------hHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEE
Confidence            5789999886553  111           11123345667889999986543222100112344568899999998754

>smart00563 PlsC Phosphate acyltransferases

Probab=86.52  E-value=2.7  Score=24.42  Aligned_cols=52  Identities=27%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342           22 ANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus        22 ~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      .+.+.+.+.++ +.+.|..+++|||........           ...+......+|.+.+..|+
T Consensus        60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~~-----------~~~~~~g~~~la~~~~~~v~  111 (118)
T smart00563       60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPGK-----------LLPFKKGAARLALEAGVPIV  111 (118)
T ss_pred             HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCCC-----------cCCCcccHHHHHHHcCCCEE
Confidence            34444444444 456789999999998622220           11223345567777776554

Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.

>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168

Probab=85.93  E-value=3.1  Score=26.57  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=24.7

Q ss_pred             CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342           38 GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL   86 (121)
Q Consensus        38 ~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~   86 (121)
                      +..+++|||..- ..             ..++..-...+|.+.++.|+.
T Consensus        95 ~~~l~IFPEGtR-~~-------------~~~fk~G~~~lA~~~~~PIvP  129 (163)
T cd07988          95 EFVLAIAPEGTR-SK-------------VDKWKTGFYHIARGAGVPILL  129 (163)
T ss_pred             CcEEEEeCCCCC-CC-------------CcChhhHHHHHHHHcCCCEEE
Confidence            456999999986 21             123556777888899988853

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.

>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924

Probab=85.05  E-value=3.4  Score=27.42  Aligned_cols=59  Identities=17%  Similarity=0.113  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342           23 NFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG   87 (121)
Q Consensus        23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G   87 (121)
                      +.+.+.+ ..++.++|-.++||||... ......    +.+....++..-...+|.+.++.|+.-
T Consensus        84 ~~~~~~~-~~~~L~~G~~l~IFPEGtr-s~~~~~----~g~~~~~~fk~G~~~lA~~~~~pIvPv  142 (210)
T cd07986          84 NRESLRE-ALRHLKNGGALIIFPAGRV-STASPP----FGRVSDRPWNPFVARLARKAKAPVVPV  142 (210)
T ss_pred             hHHHHHH-HHHHHhCCCEEEEECCccc-cccccc----CCccccCCccHHHHHHHHHHCCCEEEE
Confidence            4443433 3334467889999999986 221100    000012345566778889999888543

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=84.84  E-value=8.4  Score=26.59  Aligned_cols=63  Identities=11%  Similarity=0.128  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342           20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL   86 (121)
Q Consensus        20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~   86 (121)
                      .+..++.+.+.++.|..-|++.|+++......+........    .-.+.+..+.+.|+++|+.+.+
T Consensus        89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~~A~~~Gv~l~l  151 (279)
T TIGR00542        89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRR----RFREGLKEAVELAARAQVTLAV  151 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHH----HHHHHHHHHHHHHHHcCCEEEE
Confidence            34567788888888888999999987532211111110000    1124566677788888887744

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=84.32  E-value=7.9  Score=26.54  Aligned_cols=62  Identities=13%  Similarity=0.015  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342           20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus        20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      .+..++.+.+.++.|+.-|++.|+++-...  ++.... ....+ ...+.++.+.+.|+++|+.+.
T Consensus        85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~--~~~~~~-~~~~~-~~~~~l~~l~~~a~~~gv~l~  146 (275)
T PRK09856         85 RRESLDMIKLAMDMAKEMNAGYTLISAAHA--GYLTPP-NVIWG-RLAENLSELCEYAENIGMDLI  146 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEcCCCC--CCCCCH-HHHHH-HHHHHHHHHHHHHHHcCCEEE
Confidence            456788999999999999999987765432  222111 00001 122467778888899998774

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=83.98  E-value=10  Score=26.37  Aligned_cols=80  Identities=10%  Similarity=0.030  Sum_probs=41.7

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCC----chhh-hcccCCCC--hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEE
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKD----ADNI-KIAEPLDG--PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNT  102 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~----~~~~-~~~~~~~~--~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns  102 (121)
                      ..+..+..|||+|+.|=.+. ..+..    .... .+......  ...+.++.-|.+++++++.....-   ....++-.
T Consensus       144 ~~r~~a~~Ga~ii~~psa~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g---~~~~~~G~  219 (279)
T cd07579         144 AGRVLALRGCDLLACPAAIA-IPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPD---PARGYTGW  219 (279)
T ss_pred             HHHHHHHCCCCEEEECCCcC-CccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccC---Cccccccc
Confidence            34555578999999997663 21110    0000 00000000  122346677889999986553221   11223344


Q ss_pred             EEEECCCCCEE
Q 033342          103 HVLLDDAGNIR  113 (121)
Q Consensus       103 ~~~i~~~G~i~  113 (121)
                      +.+++|+|.++
T Consensus       220 S~ii~P~G~v~  230 (279)
T cd07579         220 SGVFGPDTFAF  230 (279)
T ss_pred             cEEECCCeEEc
Confidence            67888998764

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=83.97  E-value=10  Score=26.57  Aligned_cols=75  Identities=7%  Similarity=-0.094  Sum_probs=40.7

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceee--------------cCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEK--------------GSD   95 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~--------------~~~   95 (121)
                      ..+.++.+|||+++-|=..   +...      . .........++.-|.+++++++.-...-.              ...
T Consensus       165 ~~r~~a~~ga~ii~~~~~~---~~~~------~-~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~  234 (297)
T cd07564         165 ARYALYAQGEQIHVAPWPD---FSPY------Y-LSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPL  234 (297)
T ss_pred             HHHHHHHCCCeEEEECCCC---cccc------c-ccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccccccc
Confidence            4445567899998864211   1100      0 01112334456778899999875321110              001


Q ss_pred             CCceEEEEEEECCCCCEEe
Q 033342           96 DARLCNTHVLLDDAGNIRS  114 (121)
Q Consensus        96 ~~~~~Ns~~~i~~~G~i~~  114 (121)
                      ...++=.+.+++|+|+++.
T Consensus       235 ~~~~~G~S~iv~P~G~il~  253 (297)
T cd07564         235 EVLGGGGSAIVGPDGEVLA  253 (297)
T ss_pred             cccCCCceEEECCCCCeec
Confidence            1224556889999999875

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>PTZ00261 acyltransferase; Provisional

Probab=83.77  E-value=5.3  Score=29.13  Aligned_cols=52  Identities=15%  Similarity=0.106  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342           24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS   85 (121)
Q Consensus        24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii   85 (121)
                      ...+.+.+++..++|-.+++|||..-..+..          .-.++..-.-.+|.+.++.|+
T Consensus       201 ~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~gg----------~L~pFK~GaF~LAieagvPIV  252 (355)
T PTZ00261        201 QAQVQQAIDAHLRLGGSLAFFPEGAINKHPQ----------VLQTFRYGTFATIIKHRMEVY  252 (355)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCcCCcCCCC----------cCCCCcHHHHHHHHHcCCCEE
Confidence            3345555555567888999999998521110          011344455566777887773

>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

Probab=83.06  E-value=9.1  Score=26.36  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=47.4

Q ss_pred             cccEEEEEEeccc----cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--C--CCChHHHHHHHH
Q 033342            5 HSVRVAVAQMTSI----NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--P--LDGPIMQGYCSL   76 (121)
Q Consensus         5 ~~~~ia~vQ~~~~----~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~   76 (121)
                      ..+|||.+|+..-    .+.....+++.+++..     +|++..|=+.- ..-.++ . +.+.  -  -+.+.++.+.++
T Consensus         2 ~~ikva~~~L~gC~GC~~slldl~E~L~dll~~-----~div~~~~l~D-~keiPE-v-DValVEGsV~~ee~lE~v~El   73 (247)
T COG1941           2 EKIKVATVWLTGCSGCHMSLLDLYEKLLDLLED-----ADIVYCPTLVD-EKEIPE-V-DVALVEGSVCDEEELELVKEL   73 (247)
T ss_pred             cceEEEEEEeccccchHHHHHhHHHHHHHhhhh-----hcEEEeecccc-cccCCc-c-cEEEEecccCcHHHHHHHHHH
Confidence            4689999999873    3344445555555543     37777765443 221111 1 1111  0  256778888888


Q ss_pred             HHHcCcEEEecccee
Q 033342           77 ARESSMWLSLGGFQE   91 (121)
Q Consensus        77 a~~~~~~ii~G~~~~   91 (121)
                      -++.++.|.+|+-..
T Consensus        74 RekakivVA~GsCA~   88 (247)
T COG1941          74 REKAKIVVALGSCAV   88 (247)
T ss_pred             HHhCcEEEEEecchh
Confidence            888899998887543

>PRK13287 amiF formamidase; Provisional

Probab=80.18  E-value=19  Score=25.85  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=39.1

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+.+|||+++-|=.+. ..            ..+...-..+.-|.+++++++.-...-. ...-.++=.+.+++|+
T Consensus       173 ~~R~~a~~GAeill~~s~~~-~~------------~~~~w~~~~~arA~en~~~vv~an~~G~-~~~~~~~G~S~Iidp~  238 (333)
T PRK13287        173 MAREAAYKGANVMIRISGYS-TQ------------VREQWILTNRSNAWQNLMYTASVNLAGY-DGVFYYFGEGQVCNFD  238 (333)
T ss_pred             HHHHHHHCCCeEEEECCccC-Cc------------chhHHHHHHHHHHHhCCcEEEEEecccc-CCCeeeeeeeEEECCC
Confidence            34555568999999774332 11            0111122234456778887754322211 1111334567889999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       239 G~vl~~  244 (333)
T PRK13287        239 GTTLVQ  244 (333)
T ss_pred             CcEEEe
Confidence            998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
1ems_A	440	Crystal Structure Of The C. Elegans Nitfhit Protein		2e-18
1j31_A	262	Crystal Structure Of Hypothetical Protein Ph0642 Fr		9e-07
2w1v_A	276	Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso		9e-07
3ivz_A	262	Crystal Structure Of Hyperthermophilic Nitrilase Le		1e-06
1uf4_A	303	Crystal Structure Of C171aV236A MUTANT OF N-Carbamy		6e-05
1erz_A	303	Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh		7e-05
1fo6_A	304	Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A		1e-04
2ggl_A	304	The Mutant A222c Of Agrobacterium Radiobacter N-Car		2e-04
2ggk_A	304	The Mutant A302c Of Agrobacterium Radiobacter N-Car		2e-04

>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 9   VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
           +AV QMTS NDL  NF     +++ A     +++  PE F ++G    + I +A   D  
Sbjct: 17  IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCE 76
Query: 69  IMQGYCSLARESSMWLSLGGFQEK-GSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            M+ Y  LAR+ ++WLSLGG   K  SD A   NTH+++D  G  R+ Y K+HL
Sbjct: 77  YMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHL 130

>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 7   VRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPENF--SYVGDKDADNIKIAE 63
           V+V   Q    I +L  N++   +L+KEA+  GAKL+  PE F   Y  +   +   +A+
Sbjct: 2   VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61
Query: 64  PL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            + +G        LARE  +++  G  ++ G+    L N+ V++   G I   YRKIHL
Sbjct: 62  QIPEGETTTFLXELARELGLYIVAGTAEKSGN---YLYNSAVVVGPRGYI-GKYRKIHL 116

>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 6   SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENF------SYVGDKDADNI 59
           + R+A+ Q+   +  + N      LV+EAA  GA ++  PE F      +Y  D      
Sbjct: 3   TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPD------ 56
Query: 60  KIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKI 119
             AE + G   Q    +A+ESS++L  G   E+  D  +L NT  +    G++   +RKI
Sbjct: 57  -YAEKIPGESTQKLSEVAKESSIYLIGGSIPEE--DAGKLYNTCSVFGPDGSLLVKHRKI 113
Query: 120 HL 121
           HL
Sbjct: 114 HL 115

>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 7   VRVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPENF--SYVGDKDADNIKIAE 63
           V+VA  QM   I +   N++   +L+KEA+  GA+L+  PE F   Y  +   +  +IA+
Sbjct: 2   VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQ 61
Query: 64  PL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            + +G        +AR++ +++ + G  EK  D   L N+ V++   G I   YRKIHL
Sbjct: 62  KIPEGETTTFLMDVARDTGVYI-VAGTAEKDGD--VLYNSAVVVGPRGFI-GKYRKIHL 116

>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 9   VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
           +AV Q   I           RL+    +AAS GA  + FPE         + +  + + D
Sbjct: 6   LAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELD 65
Query: 58  NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
           +    E + GP+++     A E  +  +LG  +   E G    R  NT +L+D +G I  
Sbjct: 66  SFYETE-MPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 122
Query: 115 TYRKIHL 121
            YRKIHL
Sbjct: 123 KYRKIHL 129

>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 9   VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
           +AV Q   I           RL+    +AAS GA  + FPE         + +  + + D
Sbjct: 6   LAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELD 65
Query: 58  NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
           +    E + GP+++     A E  +  +LG  +   E G    R  NT +L+D +G I  
Sbjct: 66  SFYETE-MPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 122
Query: 115 TYRKIHL 121
            YRKIHL
Sbjct: 123 KYRKIHL 129

>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 9   VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
           +AV Q   I           RL+     AAS G   + FPE         + +  + + D
Sbjct: 7   LAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD 66
Query: 58  NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
           +    E + GP+++     A E  +  +LG  +   E G    R  NT +L+D +G I  
Sbjct: 67  SFYETE-MPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 123
Query: 115 TYRKIHL 121
            YRKIHL
Sbjct: 124 KYRKIHL 130

>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 9   VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
           +AV Q   I           RL+     AAS G   + FPE         + +  + + D
Sbjct: 7   LAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD 66
Query: 58  NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
           +    E + GP+++     A E  +  +LG  +   E G    R  NT +L+D +G I  
Sbjct: 67  SFYETE-MPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 123
Query: 115 TYRKIHL 121
            YRKIHL
Sbjct: 124 KYRKIHL 130

>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 9   VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
           +AV Q   I           RL+     AAS G   + FPE         + +  + + D
Sbjct: 7   LAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD 66
Query: 58  NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
           +    E + GP+++     A E  +  +LG  +   E G    R  NT +L+D +G I  
Sbjct: 67  SFYETE-MPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 123
Query: 115 TYRKIHL 121
            YRKIHL
Sbjct: 124 KYRKIHL 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	2e-47
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	2e-43
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	2e-37
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	9e-33
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	2e-30
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	2e-28
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	6e-28
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	6e-28
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	4e-25
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	4e-25
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	4e-24
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	1e-08
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	9e-07
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	2e-06
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	2e-06

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score =  156 bits (397), Expect = 2e-47
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 6   SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPL 65
              +AV QMTS NDL  NF     +++ A     +++  PE F ++G    + I +A   
Sbjct: 14  RHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT 73

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAGNIRSTYRKIHL 121
           D   M+ Y  LAR+ ++WLSLGG   K   DA    NTH+++D  G  R+ Y K+HL
Sbjct: 74  DCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHL 130

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score =  142 bits (360), Expect = 2e-43
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 6   SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPL 65
           + R+A+ Q+   +  + N      LV+EAA  GA ++  PE F+            AE +
Sbjct: 3   TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTT-YFPDYAEKI 61

Query: 66  DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            G   Q    +A+ESS++L  G   E+  D  +L NT  +    G++   +RKIHL
Sbjct: 62  PGESTQKLSEVAKESSIYLIGGSIPEE--DAGKLYNTCSVFGPDGSLLVKHRKIHL 115

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score =  127 bits (320), Expect = 2e-37
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 4   AHSVRVAVAQMT-SINDLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDADNI- 59
           +  ++VA+ Q++ S  D  AN    +  ++ A       KL+  PE F+     D     
Sbjct: 8   SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKY 67

Query: 60  --KIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYR 117
              I        +Q   +LA +  + L  G   E      ++ NT ++ ++ G +   +R
Sbjct: 68  SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 127

Query: 118 KIHL 121
           K+HL
Sbjct: 128 KVHL 131

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score =  114 bits (288), Expect = 9e-33
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 1   MAGAHSVRVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNI 59
           +     +R+A+ Q T+   D   N          A+  GA+LL  PE F +         
Sbjct: 15  VIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICA 74

Query: 60  KIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKI 119
           +++             +AR+  + L +         + +   T  L D+ G + ++Y+K+
Sbjct: 75  QVSAEQVDAARSRLRGIARDRGIAL-VWSLPGPEGPE-QRGITAELADEHGEVLASYQKV 132

Query: 120 HL 121
            L
Sbjct: 133 QL 134

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score =  108 bits (273), Expect = 2e-30
 Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 6   SVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP 64
            ++V + Q+  +  D + N    ++  ++  +A   ++  PE ++   D +  N + A+ 
Sbjct: 20  HMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLN-EKADN 78

Query: 65  LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
             G        LA +  + +  G        + ++ NT   ++ +G + + Y K+HL
Sbjct: 79  NLGQSFSFIKHLAEKYKVDIVAGSVSNI--RNNQIFNTAFSVNKSGQLINEYDKVHL 133

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score =  103 bits (260), Expect = 2e-28
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 7   VRVAVAQMTSIN---DLAANFATCSRLVKEAASAGAKLLCFPENF------SYVGDKDAD 57
           + +AV Q   I               ++ +AAS GA  + FPE         +    +A+
Sbjct: 4   MILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAE 63

Query: 58  NIKIAEP-LDGPIMQGYCSLARESSMWLSLGGFQEKG-SDDARLCNTHVLLDDAGNIRST 115
                E  + GP+++     A E  +  +LG  +        R  NT +L+D +G I   
Sbjct: 64  LDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGK 123

Query: 116 YRKIHL 121
           YRKIHL
Sbjct: 124 YRKIHL 129

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score =  103 bits (258), Expect = 6e-28
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 6   SVRVAVAQM-----TSINDLAANFATCSRLVK--EAASAGAKLLCFPENFSYVGDKDADN 58
           +V VAV         +  ++  N    + ++   +    G  L+ FPE        D   
Sbjct: 12  TVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAE 71

Query: 59  I-KIAEPLDGPIMQGYCSLARESSMWL---SLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114
           + + A  + G   + +    R++++W      G   E+        NT VL+D+ G I  
Sbjct: 72  MMETAVAIPGEETEIFSRACRKANVWGVFSLTGERHEEHPRK-APYNTLVLIDNNGEIVQ 130

Query: 115 TYRKIHL 121
            YRKI  
Sbjct: 131 KYRKIIP 137

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score =  104 bits (260), Expect = 6e-28
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 7   VRVAVAQMTS--------INDLAANFATCSRLVKEAASAGAKLLCFPENFS--YVGDK-- 54
           VRV   Q +              A +     ++K AA AG  ++C  E ++  +      
Sbjct: 73  VRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTRE 132

Query: 55  DADNIKIAEPL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113
                + AE   +GP  +    LA+  +M +     +        + NT V++ ++G   
Sbjct: 133 KFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYL 192

Query: 114 STYRKIHL 121
             +RK H+
Sbjct: 193 GKHRKNHI 200

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score = 95.9 bits (239), Expect = 4e-25
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 6   SVRVAVAQM-----TSINDLAANFATCSRLVK--EAASAGAKLLCFPENFS--YVGDKDA 56
              VA  Q       S  D+  N  +  R +   +A   G +L+ FPE  +      K  
Sbjct: 13  GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW- 71

Query: 57  DNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116
            + +    + G   + Y    +E+ ++      +     +    NT +++D  G I   Y
Sbjct: 72  LSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKY 131

Query: 117 RKIHL 121
           RK+  
Sbjct: 132 RKLFP 136

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score = 94.6 bits (236), Expect = 4e-25
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%)

Query: 7   VRVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPENFS--YVGDKDADNIKIAE 63
           V+VA  QM   I +   N++   +L+KEA+  GA+L+  PE F   Y  +   +  +IA+
Sbjct: 2   VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQ 61

Query: 64  PL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
            + +G        +AR++ +++ + G  EK  D   L N+ V++   G I   YRKIHL
Sbjct: 62  KIPEGETTTFLMDVARDTGVYI-VAGTAEK--DGDVLYNSAVVVGPRGFI-GKYRKIHL 116

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score = 92.0 bits (229), Expect = 4e-24
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 8   RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLD 66
           R+++ Q ++  +D A N      L+ E  +  + L+  PE F+     +A  I  AE +D
Sbjct: 5   RISLVQGSTRWHDPAGNRDYYGALL-EPLAGQSDLVILPETFTSGFSNEA--IDKAEDMD 61

Query: 67  GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           GP +    + A      +  G  Q +   +  + N  +     G +   Y K HL
Sbjct: 62  GPTVAWIRTQAARLGAAI-TGSVQLR--TEHGVFNRLLWATPDGAL-QYYDKRHL 112

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 21/134 (15%)

Query: 6   SVRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPENF-------------SYV 51
             R+A+AQ+  ++ D A N A      + A  AGA  L  PE               ++ 
Sbjct: 6   KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFY 65

Query: 52  GDKDADNIKIAEPLDG----PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLD 107
              DA   ++A  L       ++ G+    R  S   +     E+G       N   L+ 
Sbjct: 66  AASDAALAELAAQLKPFAGLAVLVGH--PLRAPSADGNANRAIERGVPPVDTYNAASLIV 123

Query: 108 DAGNIRSTYRKIHL 121
             G +  TYRK  L
Sbjct: 124 G-GEVAGTYRKQDL 136

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 7  VRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
          VRVA     T+I D AAN A+   + +     GA L  FPE
Sbjct: 13 VRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPE 53

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 31/137 (22%)

Query: 6   SVRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPE------------------ 46
            +R+A+ Q+ +++ D+A N     R  + +A  GA L+ FPE                  
Sbjct: 4   QLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFV 63

Query: 47  --NFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHV 104
             + + +  + A  +      + P++ GY           S     + G       N   
Sbjct: 64  EASRTAL-RELAARLAEEGFGELPVLVGYL--------DRSESAQPKYGQPAGAPRNAAA 114

Query: 105 LLDDAGNIRSTYRKIHL 121
           +L   G +  T+ K HL
Sbjct: 115 VLHR-GRVALTFAKHHL 130

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 7  VRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
          +R+  A +  +  D   N       ++EA +A  ++LC PE
Sbjct: 6  IRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPE 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	99.96
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	99.96
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	99.96
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	99.96
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	99.95
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	99.95
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	99.94
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.94
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	99.93
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	99.93
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	99.93
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	99.92
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.9
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.9
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	99.89
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	94.25
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	93.34
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	93.09
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	92.62
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	92.13
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	92.11
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	91.82
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	91.62
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	91.35
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	90.45
1iuq_A	367	Glycerol-3-phosphate acyltransferase; open twisted	89.41
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	89.3
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	87.84
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	84.09
4fva_A	256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	83.7
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	82.77
4f1h_A	250	Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com	80.24
2j6v_A	301	UV endonuclease, UVDE; plasmid, TIM barrel, DNA re	80.02

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=99.96  E-value=6.6e-29  Score=169.91  Aligned_cols=114  Identities=31%  Similarity=0.422  Sum_probs=102.6

Q ss_pred             cccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE
Q 033342            5 HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL   84 (121)
Q Consensus         5 ~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i   84 (121)
                      .++|||++|+++.+|.+.|++++.+++++|++.++|||||||+++ +||...+...+++..+++..+.++++|++++++|
T Consensus         2 ~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~-~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i   80 (276)
T 2w1v_A            2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFN-SPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYL   80 (276)
T ss_dssp             CEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-SCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEE
T ss_pred             CccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcc-cCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEE
Confidence            469999999998899999999999999999999999999999999 8887766655666667899999999999999999


Q ss_pred             EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|++.++  .++++||++++++|+|++++.|+|+||
T Consensus        81 v~G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL  115 (276)
T 2w1v_A           81 IGGSIPEE--DAGKLYNTCSVFGPDGSLLVKHRKIHL  115 (276)
T ss_dssp             ECCCEEEE--ETTEEEEEEEEECTTSCEEEEEECSSC
T ss_pred             Eecceeec--CCCcEEEEEEEECCCCcEEEEEecccc
Confidence            99977664  367899999999999999999999997

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=99.96  E-value=2.8e-29  Score=172.31  Aligned_cols=115  Identities=17%  Similarity=0.253  Sum_probs=104.1

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCc
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSM   82 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~   82 (121)
                      ..+||||++|+++. +|.+.|++++.+++++|++.++|||||||+++ +||...++...++..+++..+.++++|+++++
T Consensus        18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l-~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i   96 (281)
T 3p8k_A           18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWN-NGYDLEHLNEKADNNLGQSFSFIKHLAEKYKV   96 (281)
T ss_dssp             TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTT-TTTCGGGHHHHSEETTHHHHHHHHHHHHHHTC
T ss_pred             CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCcc-CCCChhHHHHhhhccCcHHHHHHHHHHhhCCe
Confidence            46799999999986 89999999999999999999999999999999 89988776666766778899999999999999


Q ss_pred             EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++|+..+.  .++++||++++|+|+|++++.|+|+||
T Consensus        97 ~iv~G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL  133 (281)
T 3p8k_A           97 DIVAGSVSNI--RNNQIFNTAFSVNKSGQLINEYDKVHL  133 (281)
T ss_dssp             EEEEEEEEEE--ETTEEEEEEEEECTTSCEEEEEECSCC
T ss_pred             EEEEeeeEEc--cCCcEEEEEEEEcCCCeEEEEEeeEEC
Confidence            9999976553  567899999999999999999999997

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=99.96  E-value=1.1e-28  Score=169.59  Aligned_cols=115  Identities=22%  Similarity=0.252  Sum_probs=99.7

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhh-hcccCCCChHHHHHHHHHHHcC
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNI-KIAEPLDGPIMQGYCSLARESS   81 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~   81 (121)
                      +.+||||++|+++. +|++.|++++.+++++|++.++|||||||+++ +||...++. .++++..++..+.++++|++++
T Consensus        18 ~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l-~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~   96 (283)
T 3hkx_A           18 GSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFG-FGYVPSQICAQVSAEQVDAARSRLRGIARDRG   96 (283)
T ss_dssp             TEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGG-GCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcc-cCCChHHHHHHhccccCCHHHHHHHHHHHHhC
Confidence            45799999999986 69999999999999999999999999999999 898876533 4444445688999999999999


Q ss_pred             cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|++|+..+.  .++++||++++|+|+|++++.|+|+||
T Consensus        97 i~iv~G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL  134 (283)
T 3hkx_A           97 IALVWSLPGPE--GPEQRGITAELADEHGEVLASYQKVQL  134 (283)
T ss_dssp             SEEEECCBCSS--CTTTCCBEEEEECTTSCEEEEEECSSC
T ss_pred             CEEEEEEEEEc--CCCCEEEEEEEEcCCCcEEEEEccccC
Confidence            99999975441  347899999999999999999999997

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=99.96  E-value=1.1e-27  Score=164.92  Aligned_cols=116  Identities=24%  Similarity=0.381  Sum_probs=99.9

Q ss_pred             cccEEEEEEec-cccCHHHHHHHHHHHHHHH--HHCCCcEEEccCCccCCCCCCchhhhcccCC--C--ChHHHHHHHHH
Q 033342            5 HSVRVAVAQMT-SINDLAANFATCSRLVKEA--ASAGAKLLCFPENFSYVGDKDADNIKIAEPL--D--GPIMQGYCSLA   77 (121)
Q Consensus         5 ~~~~ia~vQ~~-~~~~~~~n~~~~~~~~~~a--~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~a   77 (121)
                      .++|||++|++ ..+|.+.|++++.+++++|  ++.++|||||||+++ +||...+...+++..  +  ++..+.++++|
T Consensus         9 ~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   87 (291)
T 1f89_A            9 QKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFN-SPYSTDQFRKYSEVINPKEPSTSVQFLSNLA   87 (291)
T ss_dssp             SCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTT-SCSCHHHHHHHTTBCCSSSCCHHHHHHHHHH
T ss_pred             ccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcc-cCCChHHHHHHhhhhccCCCChHHHHHHHHH
Confidence            45999999999 5699999999999999999  889999999999999 888766555555544  3  78999999999


Q ss_pred             HHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           78 RESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        78 ~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++++++|++|+++++...++++||++++++|+|++++.|+|+||
T Consensus        88 ~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL  131 (291)
T 1f89_A           88 NKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHL  131 (291)
T ss_dssp             HHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCC
T ss_pred             HHcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeecc
Confidence            99999999997665421137899999999999999999999997

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=99.95  E-value=2.8e-27  Score=160.84  Aligned_cols=111  Identities=32%  Similarity=0.505  Sum_probs=96.7

Q ss_pred             ccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccC-CCChHHHHHHHHHHHc
Q 033342            6 SVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEP-LDGPIMQGYCSLARES   80 (121)
Q Consensus         6 ~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~-~~~~~~~~l~~~a~~~   80 (121)
                      +||||++|+++. +|.+.|++++.+++++|++.++|||||||+++ +||...+   ...+++. .+++..+.++++|+++
T Consensus         1 M~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~-~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~   79 (262)
T 3ivz_A            1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFD-TGYNFETREEVFEIAQKIPEGETTTFLMDVARDT   79 (262)
T ss_dssp             -CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-TCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHH
T ss_pred             CeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcc-cCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHc
Confidence            389999999986 99999999999999999999999999999999 8887543   3344553 4678999999999999


Q ss_pred             CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++|++|. +++  .++++||++++++|+| +++.|+|+||
T Consensus        80 ~~~iv~G~-~~~--~~~~~yNs~~~i~~~G-~~~~y~K~hL  116 (262)
T 3ivz_A           80 GVYIVAGT-AEK--DGDVLYNSAVVVGPRG-FIGKYRKIHL  116 (262)
T ss_dssp             CCEEEEEE-EEE--ETTEEEEEEEEEETTE-EEEEEECSSC
T ss_pred             CcEEEEeE-EEe--eCCcEEEEEEEEcCCe-eEEEEeeccc
Confidence            99999994 443  5678999999999999 9999999997

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.5e-27  Score=161.31  Aligned_cols=110  Identities=23%  Similarity=0.313  Sum_probs=96.7

Q ss_pred             cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcE
Q 033342            5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW   83 (121)
Q Consensus         5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~   83 (121)
                      +++|||++|+++. +|.+.|++++.+++++| +.++|||||||+++ +||... ....++...++..+.++++|++++++
T Consensus         2 ~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~-~gy~~~-~~~~a~~~~~~~~~~l~~~a~~~~~~   78 (266)
T 2e11_A            2 HDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFT-SGFSNE-AIDKAEDMDGPTVAWIRTQAARLGAA   78 (266)
T ss_dssp             CCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTT-TCSCSG-GGGGCEETTSHHHHHHHHHHHHHTSE
T ss_pred             CccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCcc-ccCChh-HHHhhccCCCHHHHHHHHHHHHhCCE
Confidence            4699999999986 89999999999999999 88999999999999 788543 23455556788999999999999999


Q ss_pred             EEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           84 LSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        84 ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      |++|+..+   .++++||++++++|+|+++ .|+|+||
T Consensus        79 iv~G~~~~---~~~~~yNs~~~i~~~G~i~-~y~K~hL  112 (266)
T 2e11_A           79 ITGSVQLR---TEHGVFNRLLWATPDGALQ-YYDKRHL  112 (266)
T ss_dssp             EEEEEEEE---ETTEEEEEEEEECTTSCEE-EEECSSC
T ss_pred             EEEeeeEc---cCCcEEEEEEEECCCCCEE-EEeeecc
Confidence            99997665   4678999999999999999 9999997

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=99.94  E-value=7.5e-26  Score=156.35  Aligned_cols=114  Identities=28%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             cccEEEEEEeccc---cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh-------hhccc-CCCChHHHHH
Q 033342            5 HSVRVAVAQMTSI---NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN-------IKIAE-PLDGPIMQGY   73 (121)
Q Consensus         5 ~~~~ia~vQ~~~~---~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~-------~~~~~-~~~~~~~~~l   73 (121)
                      +++|||++|+++.   +|.+.|++++.+++++|++.++|||||||+++ +||...++       ..+.+ ...++.++.+
T Consensus         2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~-~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (303)
T 1uf5_A            2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELAL-TTFFPRWHFTDEAELDSFYETEMPGPVVRPL   80 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-SCCGGGSCCCCHHHHHTTSBSSSSCTTTHHH
T ss_pred             ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccc-cCCCccccccchhhhHHHHhhcCCCHHHHHH
Confidence            4699999999975   69999999999999999999999999999999 78754321       11111 1156788999


Q ss_pred             HHHHHHcCcEEEeccceeecCCCC---ceEEEEEEECCCCCEEeeeecCCC
Q 033342           74 CSLARESSMWLSLGGFQEKGSDDA---RLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        74 ~~~a~~~~~~ii~G~~~~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++|++++++|++|...+.  .++   ++||++++++|+|++++.|+|+||
T Consensus        81 ~~~a~~~~~~iv~G~~~~~--~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL  129 (303)
T 1uf5_A           81 FEKAAELGIGFNLGYAELV--VEGGVKRRFNTSILVDKSGKIVGKYRKIHL  129 (303)
T ss_dssp             HHHHHHHTCEEEEEEEEEE--EETTEEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred             HHHHHHhCeEEEEeeeEec--CCCCCcceeeEEEEECCCCCEeeeEeeeec
Confidence            9999999999999965542  234   799999999999999999999997

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.94  E-value=2.1e-26  Score=166.32  Aligned_cols=116  Identities=36%  Similarity=0.602  Sum_probs=97.3

Q ss_pred             CcccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc-hhhhcccCCCChHHHHHHHHHHHcCc
Q 033342            4 AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA-DNIKIAEPLDGPIMQGYCSLARESSM   82 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~a~~~~~   82 (121)
                      +..+|||++|+++..|.+.|++++.+++++|++.|+|||||||+++ +++... ....+++..+++..+.++++|+++++
T Consensus        12 ~~~~kVa~vQ~~~~~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~-~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i   90 (440)
T 1ems_A           12 TGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD-FIGLNKNEQIDLAMATDCEYMEKYRELARKHNI   90 (440)
T ss_dssp             CSEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCS-CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCccc-ccCcchhHHHHhhccCCCHHHHHHHHHHHHcCe
Confidence            3579999999999899999999999999999999999999999998 555432 22233333456789999999999999


Q ss_pred             EEEeccce--eecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           83 WLSLGGFQ--EKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        83 ~ii~G~~~--~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|++|++.  ++ ..++++||++++++|+|++++.|+|+||
T Consensus        91 ~iv~G~~~~~e~-~~~~~~yNs~~~i~~~G~i~~~yrK~hL  130 (440)
T 1ems_A           91 WLSLGGLHHKDP-SDAAHPWNTHLIIDSDGVTRAEYNKLHL  130 (440)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred             EEEecccccccc-CCCCcEEEEEEEECCCCcEEEEEeeeee
Confidence            99999766  42 1346899999999999999999999997

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=99.93  E-value=4.6e-25  Score=157.96  Aligned_cols=117  Identities=22%  Similarity=0.313  Sum_probs=95.1

Q ss_pred             CcccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc-----hhhhcccCC-CChH
Q 033342            4 AHSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA-----DNIKIAEPL-DGPI   69 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~-----~~~~~~~~~-~~~~   69 (121)
                      .+++|||++|+++.        .+.+.|++++.+++++|++.|+|||||||+++ ++|...     .+..+++.. +++.
T Consensus        70 ~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l-~gy~~~~~~~~~~~~~ae~~~~~~~  148 (405)
T 2vhh_A           70 RRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWT-MPFAFCTREKFPWCEFAEEAENGPT  148 (405)
T ss_dssp             CCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-SCSCC---------CCCBCTTTSHH
T ss_pred             CCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCccc-ccccccccchhhHHHHHhhccCCHH
Confidence            35699999999863        46889999999999999999999999999998 676431     122344444 5788


Q ss_pred             HHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           70 MQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        70 ~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      .+.++++|++++++|++|...+....++++||++++|+|+|++++.|+|+||
T Consensus       149 ~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL  200 (405)
T 2vhh_A          149 TKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHI  200 (405)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCC
T ss_pred             HHHHHHHHHHCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccC
Confidence            9999999999999999996654211257899999999999999999999997

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=99.93  E-value=2.3e-25  Score=156.13  Aligned_cols=114  Identities=22%  Similarity=0.324  Sum_probs=94.9

Q ss_pred             cccEEEEEEecc-----ccCHHHHHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCCc--hhhhcccCCCChHHHHHHH
Q 033342            5 HSVRVAVAQMTS-----INDLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDA--DNIKIAEPLDGPIMQGYCS   75 (121)
Q Consensus         5 ~~~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~   75 (121)
                      .++|||++|+++     .+|.+.|++++.+++++|++  .++|||||||+++ +||...  +...+++..+++.++.|++
T Consensus        12 ~~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l-~G~~~~~~~~~~~a~~~~~~~~~~l~~   90 (334)
T 2dyu_A           12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYST-QGLNTAKWLSEEFLLDVPGKETELYAK   90 (334)
T ss_dssp             -CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTT-TCCCTTTTTSGGGCBCSSSHHHHHHHH
T ss_pred             CccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCcc-ccCCCChhHHHHhhccCCCHHHHHHHH
Confidence            469999999985     36889999999999999987  7999999999999 775432  2344555567889999999


Q ss_pred             HHHHcCcEEEeccceeecCCCCc--eEEEEEEECCCCCEEeeeecCCC
Q 033342           76 LARESSMWLSLGGFQEKGSDDAR--LCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        76 ~a~~~~~~ii~G~~~~~~~~~~~--~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|+++++++++|..++ . .+++  +||++++|+|+|++++.|+|+||
T Consensus        91 ~a~~~~i~iv~G~~e~-~-~~~~~~~yNsa~vi~p~G~i~~~YrK~hl  136 (334)
T 2dyu_A           91 ACKEAKVYGVFSIMER-N-PDSNKNPYNTAIIIDPQGEIILKYRKLFP  136 (334)
T ss_dssp             HHHHHTCEEEEEEEEC-C-SSTTSCCEEEEEEECTTSCEEEEEECSSC
T ss_pred             HHHHhCeEEEEeeEEE-C-CCCCceeEEEEEEECCCCCEEEEEeeccC
Confidence            9999999999996544 2 2344  99999999999999999999996

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=99.93  E-value=1.9e-25  Score=156.88  Aligned_cols=116  Identities=24%  Similarity=0.336  Sum_probs=96.7

Q ss_pred             cccEEEEEEecc-----ccCHHHHHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCC--chhhhcccCCCChHHHHHHH
Q 033342            5 HSVRVAVAQMTS-----INDLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKD--ADNIKIAEPLDGPIMQGYCS   75 (121)
Q Consensus         5 ~~~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~   75 (121)
                      .++|||++|+++     .+|.+.|++++.+++++|++  .++|||||||+++ +||..  +++..+++..+++.++.|++
T Consensus        11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l-~G~~~~~~~~~~~a~~~~~~~~~~l~~   89 (341)
T 2uxy_A           11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSL-QGIMYDPAEMMETAVAIPGEETEIFSR   89 (341)
T ss_dssp             TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTT-TBCCCSHHHHHHHCBCSSSHHHHHHHH
T ss_pred             CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcc-cccCCCHHHHHHHhccCCCHHHHHHHH
Confidence            579999999995     36899999999999999987  7999999999998 77543  34555666667899999999


Q ss_pred             HHHHcCcEEEeccceeecCC--CCceEEEEEEECCCCCEEeeeecCCC
Q 033342           76 LARESSMWLSLGGFQEKGSD--DARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        76 ~a~~~~~~ii~G~~~~~~~~--~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +|+++++++++|...++...  ++++||++++|+|+|++++.|+|+||
T Consensus        90 ~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hl  137 (341)
T 2uxy_A           90 ACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIP  137 (341)
T ss_dssp             HHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSC
T ss_pred             HHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeecc
Confidence            99999999999965132222  24599999999999999999999997

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=99.92  E-value=2.8e-25  Score=166.37  Aligned_cols=114  Identities=20%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             CCCCcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH
Q 033342            1 MAGAHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE   79 (121)
Q Consensus         1 ~~~~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   79 (121)
                      |+ |+.+|||++|+++. +|++.|++++.+.+++|++.|+|||||||+++ +||.+++.. +.+...++..+.+.++|++
T Consensus         1 m~-M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~l-tGY~~~dl~-~~~~~~~~~~~~l~~la~~   77 (634)
T 3ilv_A            1 MS-LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCI-TGYGCEDLF-LTDWVAETAIEYCFEIAAS   77 (634)
T ss_dssp             ----CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-TCSCCGGGG-GSHHHHHHHHHHHHHHHTT
T ss_pred             CC-CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCcc-ccCChHHHh-hChhhhHHHHHHHHHHHHh
Confidence            55 56799999999986 89999999999999999999999999999999 899887653 2333445678889999998


Q ss_pred             c-CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           80 S-SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        80 ~-~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      + ++++++|...+   .++++||+++++ ++|++++.|+|+||
T Consensus        78 ~~~i~ivvG~p~~---~~~~lyNsa~vi-~~G~il~~y~K~hL  116 (634)
T 3ilv_A           78 CTDITVSLGLPMR---IAGITYNCVCLV-ENGIVKGFSAKQFL  116 (634)
T ss_dssp             CTTSEEEEEEEEE---ETTEEEEEEEEE-ETTEEEEEEECSSC
T ss_pred             CCCCEEEEeeeEe---eCCCccEEEEEE-ECCeEEEEEcCEeC
Confidence            6 89999995444   567899999999 79999999999997

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=99.90  E-value=8.2e-24  Score=157.51  Aligned_cols=114  Identities=25%  Similarity=0.289  Sum_probs=94.9

Q ss_pred             cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc--C
Q 033342            5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES--S   81 (121)
Q Consensus         5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~--~   81 (121)
                      ++||||++|+++. +|++.|++++.+++++|++.|+|||||||+++ +||.+.++..... ......+.++++|+++  +
T Consensus         3 ~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~l-tGy~~~dl~~~~~-~~~~~~~~l~~la~~~~~~   80 (590)
T 3n05_A            3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMAL-TGYPVEDLALRSS-FVEASRTALRELAARLAEE   80 (590)
T ss_dssp             EEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTT-TCSCCGGGGGCHH-HHHHHHHHHHHHHHHHHHT
T ss_pred             CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccc-cCCChHHHhhCHH-HHHHHHHHHHHHHHhhhhc
Confidence            4799999999986 99999999999999999999999999999999 8998876532221 3346778899999988  6


Q ss_pred             ----cEEEeccceeecCCC-------CceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 ----MWLSLGGFQEKGSDD-------ARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ----~~ii~G~~~~~~~~~-------~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                          +++++|+..+....+       +++||++++++ +|++++.|+|+||
T Consensus        81 ~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L  130 (590)
T 3n05_A           81 GFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHL  130 (590)
T ss_dssp             TCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCC
T ss_pred             cCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccC
Confidence                999999766531111       47999999998 8999999999997

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=99.90  E-value=4.6e-24  Score=160.78  Aligned_cols=112  Identities=23%  Similarity=0.212  Sum_probs=95.7

Q ss_pred             cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--CCCChHHHHHHHHHHHcC
Q 033342            5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--PLDGPIMQGYCSLARESS   81 (121)
Q Consensus         5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~   81 (121)
                      ..+|||++|+++. +|++.|++++.+++++|++.|+|||||||+++ +||...+......  ....+.++.|.++|++++
T Consensus        11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~l-tGY~~~dl~~~~~~~~~~~~~l~~l~~~a~~~~   89 (680)
T 3sdb_A           11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTL-SGYSIEDVLLQDSLLDAVEDALLDLVTESADLL   89 (680)
T ss_dssp             TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-TCGGGGGGGGCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcc-cCCChHHHhhCHHHHHhhHHHHHHHHHHhhcCC
Confidence            5799999999986 99999999999999999999999999999999 8998765422111  123467888999999999


Q ss_pred             cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++|++|...+   .++++||++++++ +|++++.|+|+||
T Consensus        90 i~ivvG~p~~---~~~~lyNsa~vi~-~G~il~~y~K~hL  125 (680)
T 3sdb_A           90 PVLVVGAPLR---HRHRIYNTAVVIH-RGAVLGVVPKSYL  125 (680)
T ss_dssp             SEEEEEEEEE---ETTEEEEEEEEEE-TTEEEEEEECSCC
T ss_pred             cEEEEeceEE---eCCCceEEEEEEe-CCCEEEEEeeecC
Confidence            9999996444   5678999999998 8999999999997

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=99.89  E-value=4.8e-23  Score=152.61  Aligned_cols=115  Identities=25%  Similarity=0.284  Sum_probs=87.1

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH---
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE---   79 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~---   79 (121)
                      +.+||||++|+|+. +|++.|++++.+++++|+++|||||||||+++ +||.++++.. .+.......+.+.+++++   
T Consensus         4 sMkmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~l-tGY~~~Dl~~-~~~~~~~~~~~l~~la~~~~~   81 (565)
T 4f4h_A            4 SMKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELAL-SGYPPEDLLL-RPAFYAASDAALAELAAQLKP   81 (565)
T ss_dssp             --CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-TCSCCGGGGG-CHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcc-cCCChHHhhh-CHHHHHHHHHHHHHHHHHhhh
Confidence            34699999999986 89999999999999999999999999999999 9999876521 111122233444454433   


Q ss_pred             -cCcEEEeccceeecC-------------CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           80 -SSMWLSLGGFQEKGS-------------DDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        80 -~~~~ii~G~~~~~~~-------------~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                       .++++++|...+...             .++++||+++++. +|++++.|+|+||
T Consensus        82 ~~~i~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hL  136 (565)
T 4f4h_A           82 FAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDL  136 (565)
T ss_dssp             STTCEEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSC
T ss_pred             cCCcEEEEeeeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeec
Confidence             578999995443111             2346999999997 6999999999997

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=94.25  E-value=0.22  Score=33.60  Aligned_cols=71  Identities=11%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+..+..|+|+|+.|=.|.  ...           .......++.-|.+++++++.....-. ..+..++=.+.+++|+|
T Consensus       175 ~r~~~~~Gadli~~psa~~--~~~-----------~~~~~~~~~arA~en~~~vv~~n~~G~-~~~~~~~G~S~ii~p~G  240 (281)
T 3p8k_A          175 LRYPARSGAKIAFYVAQWP--MSR-----------LQHWHSLLKARAIENNMFVIGTNSTGF-DGNTEYAGHSIVINPNG  240 (281)
T ss_dssp             HHHHHHTTCCEEEEEECCB--GGG-----------HHHHHHHHHHHHHHHTSEEEEEECEEE-CSSCEEECCCEEECTTS
T ss_pred             HHHHHHCCCCEEEECCCCC--Ccc-----------HHHHHHHHHHHHHHcCCEEEEEccCcC-CCCcEEeeeEEEECCCC
Confidence            3445578999999996543  110           111233456678899999975433321 12334455678899999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       241 ~vl~~  245 (281)
T 3p8k_A          241 DLVGE  245 (281)
T ss_dssp             CEEEE
T ss_pred             CEEEe
Confidence            98765

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=93.34  E-value=0.18  Score=33.95  Aligned_cols=73  Identities=15%  Similarity=0.132  Sum_probs=42.3

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+.....|+|+++.|=.+.   ....         .......++.-|.+++++++.....-....+..++=.+.+++|+|
T Consensus       178 ~r~l~~~Ga~ll~~ps~~~---~~~~---------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G  245 (291)
T 1f89_A          178 AMLSARKGAFAMIYPSAFN---TVTG---------PLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRG  245 (291)
T ss_dssp             HHHHHHTTEEEEEEECCCB---TTHH---------HHHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEECTTS
T ss_pred             HHHHHhhCCCEEEECCcCC---CCCc---------HHHHHHHHHHHHHHcCCEEEEecCccCCCCCCeeeeEEEEECCCC
Confidence            3444568999999995432   1100         011234456678899998865432211111223455678999999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       246 ~vl~~  250 (291)
T 1f89_A          246 KIVAE  250 (291)
T ss_dssp             CEEEE
T ss_pred             CEEEe
Confidence            98754

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=93.09  E-value=0.42  Score=32.20  Aligned_cols=71  Identities=18%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCC-ceEEEEEEECC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDD  108 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~  108 (121)
                      ..+..+..|+|+|+.|=.+. ....            ......++..|.+++++++.....-.  .++ .++=.+.+++|
T Consensus       173 ~~r~l~~~Ga~li~~ps~~~-~~~~------------~~~~~~~~~rA~en~~~vv~~n~~G~--~~~~~~~G~S~ii~p  237 (283)
T 3hkx_A          173 MVRAAAARGAQLVLVPTALA-GDET------------SVPGILLPARAVENGITLAYANHCGP--EGGLVFDGGSVVVGP  237 (283)
T ss_dssp             HHHHHHHTTCSEEEEECCCB-SCCT------------HHHHTHHHHHHHHHTCEEEEECBEEE--ETTEEEECCCEEECT
T ss_pred             HHHHHHHCCCCEEEECCCCC-Cccc------------HHHHHHHHHHHHHhCCEEEEEccccC--CCCeEEeeEEEEECC
Confidence            44455678999999997654 2211            11234456678899999876543321  222 23345788999


Q ss_pred             CCCEEee
Q 033342          109 AGNIRST  115 (121)
Q Consensus       109 ~G~i~~~  115 (121)
                      +|+++..
T Consensus       238 ~G~vl~~  244 (283)
T 3hkx_A          238 AGQPLGE  244 (283)
T ss_dssp             TSCEEEE
T ss_pred             CCCEEEe
Confidence            9998754

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=92.62  E-value=0.27  Score=32.91  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+..+..|+|+++.|=.+.   ....         .......++.-|.+++++++.....-....+..++=.+.+++|+|
T Consensus       162 ~r~~~~~ga~ll~~ps~~~---~~~~---------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G  229 (276)
T 2w1v_A          162 AQIYAQRGCQLLVYPGAFN---LTTG---------PAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWG  229 (276)
T ss_dssp             HHHHHHTTEEEEEEECCCC---TTHH---------HHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECTTS
T ss_pred             HHHHHHcCCCEEEECCcCC---CcCC---------HHHHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECCCC
Confidence            3445568999999996443   1100         011233456677899998865532211111223445678899999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       230 ~v~~~  234 (276)
T 2w1v_A          230 QVLTK  234 (276)
T ss_dssp             CEEEE
T ss_pred             CEeEE
Confidence            98754

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=92.13  E-value=0.43  Score=31.64  Aligned_cols=68  Identities=12%  Similarity=0.141  Sum_probs=42.4

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+..+..|+|+++.|=.+. ..               .....++.-|.+++++++.....-.. .+-.++=.+.+++|+|
T Consensus       155 ~r~~~~~ga~li~~ps~~~-~~---------------~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G  217 (262)
T 3ivz_A          155 ARTLALKGADVIAHPANLV-MP---------------YAPRAMPIRALENKVYTVTADRVGEE-RGLKFIGKSLIASPKA  217 (262)
T ss_dssp             HHHHHHTTCSEEEEEECCC-SS---------------CHHHHHHHHHHHHTCEEEEEECCSEE-TTEECCCCCEEECTTS
T ss_pred             HHHHHHCCCCEEEEcCCCC-ch---------------HHHHHHHHHHHhcCcEEEEECCCCcC-CCceEeeeEEEECCCC
Confidence            4455678999999997654 10               12345567788999988655322110 1112334478899999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       218 ~il~~  222 (262)
T 3ivz_A          218 EVLSM  222 (262)
T ss_dssp             CEEEE
T ss_pred             CEeec
Confidence            98754

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=92.11  E-value=0.68  Score=32.14  Aligned_cols=72  Identities=8%  Similarity=0.092  Sum_probs=44.8

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+.++..|+|+|+.|=.|. .+  .          .......++.-|.+++++++.-...-. ..+..++=.+.+++|+
T Consensus       174 ~~r~l~~~Gadlll~psa~~-~~--~----------~~~~~~l~~arA~En~~~vv~an~~G~-~~~~~~~G~S~Iidp~  239 (341)
T 2uxy_A          174 IWRDCAMKGAELIVRCQGYM-YP--A----------KDQQVMMAKAMAWANNCYVAVANAAGF-DGVYSYFGHSAIIGFD  239 (341)
T ss_dssp             HHHHHHHTTCSEEEEEECCB-TT--C----------HHHHHHHHHHHHHHHTCEEEEEECEEE-CSSCEEECCCEEECTT
T ss_pred             HHHHHHHcCCCEEEEcCCCC-CC--c----------HHHHHHHHHHHHHhCCcEEEEECCCCC-CCCceeeeEEEEECCC
Confidence            44555568999999996553 11  0          112344556778899999876543321 1222344567889999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       240 G~vla~  245 (341)
T 2uxy_A          240 GRTLGE  245 (341)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            998764

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=91.82  E-value=0.85  Score=31.52  Aligned_cols=72  Identities=14%  Similarity=0.047  Sum_probs=44.1

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+..+..|+|+|+.|=.+. ...            .......++..|.+++++++.-...-. ..+..++=.+.+++|+
T Consensus       174 ~~r~~~~~Gadlil~psaw~-~~~------------~~~~~~~~~arA~En~~~vv~an~~G~-~~~~~~~G~S~Iidp~  239 (334)
T 2dyu_A          174 LAREAAYKGCNVYIRISGYS-TQV------------NDQWILTNRSNAWHNLMYTVSVNLAGY-DNVFYYFGEGQICNFD  239 (334)
T ss_dssp             HHHHHHHTTCSEEEEEESSC-TTS------------HHHHHHHHHHHHHHHTCEEEEEECSBS-SSSCCCCCEEEEECTT
T ss_pred             HHHHHHHcCCCEEEEeCCCC-CCc------------HHHHHHHHHHHHHhCCCEEEEECCCcC-CCCeeeeeEEEEECCC
Confidence            44555568999999986543 110            012334556778899998865432211 1222455667889999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       240 G~vla~  245 (334)
T 2dyu_A          240 GTTLVQ  245 (334)
T ss_dssp             SCEEEE
T ss_pred             CCEeee
Confidence            998764

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=91.62  E-value=0.59  Score=33.48  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG  110 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G  110 (121)
                      .+..+..|+|+++.|=.+. ..        ..   .......++.-|.+++++++.....-....+..++=.+.+++|+|
T Consensus       178 ~r~l~~~Ga~il~~psa~~-~~--------~~---~~~~~~~~~arA~En~~~vv~an~~G~~~~~~~~~G~S~ii~P~G  245 (440)
T 1ems_A          178 SLWNRKRGAQLLSFPSAFT-LN--------TG---LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWG  245 (440)
T ss_dssp             HHHHHHTTCSEEECCBCCC-HH--------HH---HHHHHHHHHHHHHHHTCEEEECBBEEEEETTEEEECCCEEECTTS
T ss_pred             HHHHHHcCCcEEEECCcCC-CC--------Cc---HHHHHHHHHHHHHhcCcEEEEecccccCCCCceeeeeeEEECCCC
Confidence            4444568999999996543 00        00   002233456678899999976543321111123344678999999


Q ss_pred             CEEee
Q 033342          111 NIRST  115 (121)
Q Consensus       111 ~i~~~  115 (121)
                      +++..
T Consensus       246 ~vla~  250 (440)
T 1ems_A          246 AVVAQ  250 (440)
T ss_dssp             CEEEE
T ss_pred             Ceecc
Confidence            98764

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=91.35  E-value=0.33  Score=36.19  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+.++..||++++.|=.+. .....          .......++..|.+++++++.-...-. .++-.++-.+++++|+
T Consensus       177 ~~r~la~~GA~ii~~psAs~-~~~gk----------~~~r~~ll~arA~e~~~~vvy~N~vG~-~~~~~f~G~S~iidp~  244 (565)
T 4f4h_A          177 AAQLAKAAGAQVLIVPNGSP-YHMNK----------DAVRIDILRARIRETGLPMVYVNLVGG-QDELVFDGGSFVLDGA  244 (565)
T ss_dssp             HHHHHHHTTCSEEEEEECCB-CCTTH----------HHHHHHHHHHHHHHHCCCEEEEECEEE-ETTEEEEBCCEEECTT
T ss_pred             hhHHHHhCCCeeeecccccc-cccCc----------HHHHHHHHHHHHHHhCCcEEEeeeecC-CCCeEEECCcceecCC
Confidence            34455678999999997664 11111          111234567788899998865543321 1333566788999999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       245 G~vla~  250 (565)
T 4f4h_A          245 GELVAK  250 (565)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            998764

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=90.45  E-value=1  Score=33.66  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=45.1

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCc-eEEEEEEECCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR-LCNTHVLLDDA  109 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~-~~Ns~~~i~~~  109 (121)
                      .+.++..|+|+++.|=.+. ....          ........++.-|.+++++++.-...-.  .++. +.=.+++++|+
T Consensus       173 ~~~la~~Ga~ii~~psa~p-~~~g----------k~~~~~~l~~~rA~e~~~~vv~an~~G~--~~~~~f~G~S~iidp~  239 (590)
T 3n05_A          173 VPAARSAGAGLLLSVNASP-YERD----------KDDTRLELVRKRAQEAGCTTAYLAMIGG--QDELVFDGDSIVVDRD  239 (590)
T ss_dssp             HHHHHHTTCSEEEEEECCB-CCCC----------SSCHHHHHHHHHHHHHTSEEEEEECEEE--ETTEEEEBCCEEECTT
T ss_pred             HHHHHHcCCCEEEEecCCc-cccC----------cHHHHHHHHHHHHHHhCCEEEEEecccC--CCCeEEeCcEEEECCC
Confidence            3445578999999986654 1111          1223355677788999999875543321  2223 34467888999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       240 G~vla~  245 (590)
T 3n05_A          240 GEVVAR  245 (590)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            998764

>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A

Probab=89.41  E-value=1.3  Score=31.39  Aligned_cols=63  Identities=11%  Similarity=0.062  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhc-ccCCCChHHHHHHHHHHHcCcE
Q 033342           19 DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI-AEPLDGPIMQGYCSLARESSMW   83 (121)
Q Consensus        19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~~~~   83 (121)
                      +...|++.+.+.++.....|.-++||||..=.-+ ..++- .+ ..++.....+.+..+|.+.+++
T Consensus       204 ~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~-~~~~g-~l~~~~Fk~gs~~~~~~LA~ksg~P  267 (367)
T 1iuq_A          204 KRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRP-DPSTG-EWYPAPFDASSVDNMRRLIQHSDVP  267 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCB-CTTTC-CBCCCCCCHHHHHHHHHHHHTSSSC
T ss_pred             hhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCCCC-ccccccccchhhhHHHHHHHHcCCC
Confidence            3456777777777766677899999999874111 11000 11 2236677888899999999988

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=89.30  E-value=2.8  Score=27.65  Aligned_cols=64  Identities=11%  Similarity=0.047  Sum_probs=39.1

Q ss_pred             CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCC-CceEEEEEEECCCCCEEee
Q 033342           38 GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDD-ARLCNTHVLLDDAGNIRST  115 (121)
Q Consensus        38 ~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~-~~~~Ns~~~i~~~G~i~~~  115 (121)
                      |+|+++.|=.|.  ...           .......++.-|.+++++++.....-. ..+ ..++=.+.+++|+|+++..
T Consensus       165 ga~~i~~~s~w~--~~~-----------~~~~~~~~~~rA~en~~~vv~an~~G~-~~~~~~~~G~S~ii~p~G~v~~~  229 (266)
T 2e11_A          165 DFDLQLFVANWP--SAR-----------AYAWKTLLRARAIENLCFVAAVNRVGV-DGNQLHYAGDSAVIDFLGQPQVE  229 (266)
T ss_dssp             SCSEEEEEECCC--GGG-----------HHHHHHHHHHHHHHTTSEEEEEECEEE-CTTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCcEEEEeCCCC--CCc-----------hHHHHHHHHHHHHhcCcEEEEEcCCcC-CCCCceEeeeEEEECCCCceeee
Confidence            899999887653  110           012334556778899999865533221 112 1344568899999998754

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=87.84  E-value=3  Score=28.19  Aligned_cols=73  Identities=10%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             cEEEEEEecc------ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc
Q 033342            7 VRVAVAQMTS------INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES   80 (121)
Q Consensus         7 ~~ia~vQ~~~------~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   80 (121)
                      +++..+....      ....+..++.+.+.++.|..-|++.|++|-  .......+.+..     .-+.+..+.+.|+++
T Consensus        90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~--~~~~~~~~~~~~-----~~~~l~~l~~~a~~~  162 (305)
T 3obe_A           90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPS--LPRIENEDDAKV-----VSEIFNRAGEITKKA  162 (305)
T ss_dssp             CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECC--CCCCSSHHHHHH-----HHHHHHHHHHHHHTT
T ss_pred             CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCC--CCCCCCHHHHHH-----HHHHHHHHHHHHHHc
Confidence            5665555433      123566788888999999899999999872  211111111111     124566777788899


Q ss_pred             CcEEEe
Q 033342           81 SMWLSL   86 (121)
Q Consensus        81 ~~~ii~   86 (121)
                      |+.+.+
T Consensus       163 Gv~l~l  168 (305)
T 3obe_A          163 GILWGY  168 (305)
T ss_dssp             TCEEEE
T ss_pred             CCEEEE
Confidence            987753

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=84.09  E-value=2  Score=28.88  Aligned_cols=43  Identities=12%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342           72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST  115 (121)
Q Consensus        72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~  115 (121)
                      .++.-|.+++++++.....-.. .+..++=.+.+++|+|+++..
T Consensus       218 ~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~  260 (303)
T 1uf5_A          218 SMQAGSYQNGAWSAAAGKAGME-ENCMLLGHSCIVAPTGEIVAL  260 (303)
T ss_dssp             HHHHHHHHHTCEEEEEEBCEEE-TTEEECCCCEEECTTSCEEEE
T ss_pred             HHHhhhhcCCcEEEEECccccc-CCccccceeEEECCCCCEecc
Confidence            3566788999998655332211 222344557889999998764

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}

Probab=83.70  E-value=1.2  Score=28.41  Aligned_cols=40  Identities=18%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             ccEEEEEEeccc----cCHHHHHHHHHHHHHHHHHCCCcEEEccCCc
Q 033342            6 SVRVAVAQMTSI----NDLAANFATCSRLVKEAASAGAKLLCFPENF   48 (121)
Q Consensus         6 ~~~ia~vQ~~~~----~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~   48 (121)
                      .+++.++..|+.    .+.....+.+.+.++   +.++|||+|.|..
T Consensus        11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~---~~~pDIi~LQEv~   54 (256)
T 4fva_A           11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK---NVNPDILFLQEVV   54 (256)
T ss_dssp             TCEEEEEEEECCTTCCTTHHHHHHHHHHHHH---HHCCSEEEEEEEC
T ss_pred             CCEEEEEEEecCCCCCcCHHHHHHHHHHHHH---HcCCCEEEEEecC
Confidence            355666666664    234444555555554   5689999999975

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=82.77  E-value=2.4  Score=30.18  Aligned_cols=72  Identities=10%  Similarity=-0.021  Sum_probs=40.7

Q ss_pred             HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC---------------CC
Q 033342           32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS---------------DD   96 (121)
Q Consensus        32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~---------------~~   96 (121)
                      +..+..|+|+|+.|=.+.  +....          ......++.-|.+++++++.....-...               ..
T Consensus       244 r~la~~GAdill~psa~~--~~~~~----------~~w~~l~raRAiEn~~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~  311 (405)
T 2vhh_A          244 MMFGLNGAEIVFNPSATI--GRLSE----------PLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEF  311 (405)
T ss_dssp             HHHHHTTCSEEEEEECCB--CTTTH----------HHHHHHHHHHHHHHTSEEEEEECEECCCCC---------------
T ss_pred             HHHHHcCCCEEEEcccCC--CCCCH----------HHHHHHHHHHHHHcCceEEEeccccccccccccccccCccccccC
Confidence            334567999999998664  21100          1122345666788999886543221100               00


Q ss_pred             CceEEEEEEECCCCCEEee
Q 033342           97 ARLCNTHVLLDDAGNIRST  115 (121)
Q Consensus        97 ~~~~Ns~~~i~~~G~i~~~  115 (121)
                      ..++=.+++++|+|+++..
T Consensus       312 ~~f~G~S~IidP~G~vla~  330 (405)
T 2vhh_A          312 GPFYGSSYVAAPDGSRTPS  330 (405)
T ss_dssp             --EECCCCCBCTTSCBCCC
T ss_pred             ceeccccceECCCCCEeec
Confidence            1235567889999988643

>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*

Probab=80.24  E-value=1.4  Score=27.64  Aligned_cols=40  Identities=8%  Similarity=0.068  Sum_probs=24.1

Q ss_pred             ccEEEEEEeccc--cCHHHHHHHHHHHHHHHHHCCCcEEEccCCc
Q 033342            6 SVRVAVAQMTSI--NDLAANFATCSRLVKEAASAGAKLLCFPENF   48 (121)
Q Consensus         6 ~~~ia~vQ~~~~--~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~   48 (121)
                      ++||.....+..  .+.....+.+.+.++   +.++|||+|.|..
T Consensus         3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~---~~~pDIi~LQEv~   44 (250)
T 4f1h_A            3 KLSIISWNVDGLDTLNLADRARGLCSYLA---LYTPDVVFLQELI   44 (250)
T ss_dssp             CEEEEEEECCTTCCTTHHHHHHHHHHHHH---HHCCSEEEEEEEC
T ss_pred             eEEEEEEEeCCCCCcCHHHHHHHHHHHHH---HcCCCEEEEEeCC
Confidence            456655544321  234444555555554   4589999999964

>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A

Probab=80.02  E-value=4.4  Score=27.63  Aligned_cols=81  Identities=17%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             cccEEEEEEeccccC--------------------HHHHHHHHHHHHHHHHHCCCcEEEc-cCCccCCCCCCchhhhccc
Q 033342            5 HSVRVAVAQMTSIND--------------------LAANFATCSRLVKEAASAGAKLLCF-PENFSYVGDKDADNIKIAE   63 (121)
Q Consensus         5 ~~~~ia~vQ~~~~~~--------------------~~~n~~~~~~~~~~a~~~~~dlvv~-PE~~~~~~~~~~~~~~~~~   63 (121)
                      ..+|+|.+-++...+                    ...|++.+.+.++.+.+.|.+++=+ .|++..+..+...+ .. .
T Consensus        21 ~~~rlG~~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft~~~~~w-~~-~   98 (301)
T 2j6v_A           21 HMIRLGYPCENLTLGATTNRTLRLAHLTEERVREKAAENLRDLERILRFNADHGFALFRIGQHLIPFASHPLFPY-DW-E   98 (301)
T ss_dssp             CSEEEEEESEETTTTEESCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEECCGGGSTTTTSTTCCS-CH-H
T ss_pred             CeeEEEEEEEeccCCCCCccceeHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCcccccCCCcccC-Cc-C
Confidence            357888886654322                    2679999999999999999888766 34433111111111 01 0


Q ss_pred             CCCChHHHHHHHHHHHcCcEEEec
Q 033342           64 PLDGPIMQGYCSLARESSMWLSLG   87 (121)
Q Consensus        64 ~~~~~~~~~l~~~a~~~~~~ii~G   87 (121)
                      +...+..+.+.++++++++.+++-
T Consensus        99 ~~~~~~~~~~~~~~~~~gi~i~~H  122 (301)
T 2j6v_A           99 GAYEEELARLGALARAFGQRLSMH  122 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEe
Confidence            122356778899999999866443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	5e-22
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	3e-16
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	1e-13
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	4e-12

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 85.6 bits (210), Expect = 5e-22
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 7   VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLD 66
             +AV QMTS NDL  NF     +++ A     +++  PE F ++G    + I +A   D
Sbjct: 6   HFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATD 65

Query: 67  GPIMQGYCSLARESSMWLSLGGFQEKGSD-DARLCNTHVLLDDAGNIRSTYRKIH 120
              M+ Y  LAR+ ++WLSLGG   K     A   NTH+++D  G  R+ Y K+H
Sbjct: 66  CEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLH 120

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 70.5 bits (171), Expect = 3e-16
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 7   VRVAVAQMTSIN---DLAANFATCSRLVKEAASAGAKLLCFPENF-------SYVGDKDA 56
           + +AV Q   I               ++ +AAS GA  + FPE          +  D+  
Sbjct: 4   MILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAE 63

Query: 57  DNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS-DDARLCNTHVLLDDAGNIRST 115
            +      + GP+++     A E  +  +LG  +        R  NT +L+D +G I   
Sbjct: 64  LDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGK 123

Query: 116 YRKIHL 121
           YRKIHL
Sbjct: 124 YRKIHL 129

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 63.1 bits (152), Expect = 1e-13
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 7   VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFS---YVGDKDADNIKIA 62
           V+V   QM     +L  N++   +L+KEA+  GAKL+  PE F        ++       
Sbjct: 2   VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61

Query: 63  EPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
           +  +G        LARE  ++                     ++         YRKIHL
Sbjct: 62  QIPEGETTTFLMELARELGLY----IVAGTAEKSGNYLYNSAVVVGPRGYIGKYRKIHL 116

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 4e-12
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 4   AHSVRVAVAQMT-SINDLAANFATCSRLVKEAAS--AGAKLLCFPENFS--YVGDKDADN 58
           +  ++VA+ Q++ S  D  AN    +  ++ A       KL+  PE F+  Y  D+    
Sbjct: 7   SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKY 66

Query: 59  IKIAEPL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYR 117
            ++  P      +Q   +LA +  + L  G   E      ++ NT ++ ++ G +   +R
Sbjct: 67  SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 126

Query: 118 KIH 120
           K+H
Sbjct: 127 KVH 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.96
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	99.95
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	99.94
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	99.93
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	93.96
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	93.25
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	93.21
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	90.7
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	84.57
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	82.0
d1wdua_	228	Endonuclease domain of TRAS1 retrotransposon (ORF2	80.89

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=8.8e-29  Score=167.02  Aligned_cols=120  Identities=38%  Similarity=0.641  Sum_probs=103.1

Q ss_pred             CCCCcccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc
Q 033342            1 MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES   80 (121)
Q Consensus         1 ~~~~~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   80 (121)
                      |.. .++|||++|+++.+|++.|++++.+++++|++.|+|||||||+++++++...+..+.+...+++.++.++++|+++
T Consensus         1 m~~-~~~rVA~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~   79 (271)
T d1emsa2           1 MAT-GRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKH   79 (271)
T ss_dssp             CCC-SEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCC-CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCcCeEEECCccccccCCCHHHHHHHHHhhcchHHHhhhhhhhcc
Confidence            443 4699999999988999999999999999999999999999999875676666555566666778899999999999


Q ss_pred             CcEEEeccceeecC-CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           81 SMWLSLGGFQEKGS-DDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        81 ~~~ii~G~~~~~~~-~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++++++|+++.... +++++||++++++++|++++.|+|+||
T Consensus        80 ~i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l  121 (271)
T d1emsa2          80 NIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHL  121 (271)
T ss_dssp             TCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred             cccccccceeeeeecCCCceeEEEEEEeCCceEEEeeeeecc
Confidence            99999997765432 346899999999999999999999997

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-27  Score=160.37  Aligned_cols=117  Identities=22%  Similarity=0.341  Sum_probs=100.7

Q ss_pred             CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCchhhhc----ccCCCChHHHHHHHH
Q 033342            4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDADNIKI----AEPLDGPIMQGYCSL   76 (121)
Q Consensus         4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~   76 (121)
                      ++.||||++|++.. +|.+.|++++++++++|+++  ++|||||||+++ +||...+....    ....+++.++.++++
T Consensus         7 ~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (281)
T d1f89a_           7 SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFN-SPYSTDQFRKYSEVINPKEPSTSVQFLSNL   85 (281)
T ss_dssp             SSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTT-SCSCHHHHHHHTTBCCSSSCCHHHHHHHHH
T ss_pred             ccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCccc-CCCchhHHHHHHhhhcccCCCHHHHHHHHH
Confidence            35799999999974 89999999999999998654  788999999999 89987654332    233567899999999


Q ss_pred             HHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           77 ARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        77 a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      |++++++|++|+++....+++++||++++++|+|+++..|+|+|+
T Consensus        86 A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~  130 (281)
T d1f89a_          86 ANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHL  130 (281)
T ss_dssp             HHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCC
T ss_pred             hhhcCceeecceeeeeccccCceeeeccccccccccccccccccc
Confidence            999999999998776555678999999999999999999999985

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=4.1e-26  Score=153.37  Aligned_cols=111  Identities=31%  Similarity=0.452  Sum_probs=95.5

Q ss_pred             ccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhh---hccc-CCCChHHHHHHHHHHHc
Q 033342            6 SVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNI---KIAE-PLDGPIMQGYCSLARES   80 (121)
Q Consensus         6 ~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~a~~~   80 (121)
                      +||||++|+++. +|+++|++++.+++++|+++|+|||||||+++ +||...+..   ..+. ..+++..+.++++|+++
T Consensus         1 ~~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~   79 (262)
T d1j31a_           1 MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFD-TGYNFESREEVFDVAQQIPEGETTTFLMELAREL   79 (262)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-TCSCCSSHHHHHTTCBCTTTSHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccc-cCCchhhhhHhhhhhhhcccCHHHHHHHHhhhcc
Confidence            489999999975 89999999999999999999999999999999 888765432   2222 23578999999999999


Q ss_pred             CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      ++.+++|+...   .++++||++++++| |+++..|+|+||
T Consensus        80 ~i~i~~g~~~~---~~~~~~n~~~~i~~-g~~~~~y~K~~l  116 (262)
T d1j31a_          80 GLYIVAGTAEK---SGNYLYNSAVVVGP-RGYIGKYRKIHL  116 (262)
T ss_dssp             TCEEEEEEEEE---ETTEEEEEEEEEET-TEEEEEEECSSC
T ss_pred             CceEEeeeeec---ccccccccceEEEe-eeEEEEEeeeec
Confidence            99999997655   66789999999996 788999999997

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=99.93  E-value=1.1e-25  Score=153.77  Aligned_cols=116  Identities=26%  Similarity=0.269  Sum_probs=96.1

Q ss_pred             cccEEEEEEecc-c--cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch-------hh-hcccCCCChHHHHH
Q 033342            5 HSVRVAVAQMTS-I--NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD-------NI-KIAEPLDGPIMQGY   73 (121)
Q Consensus         5 ~~~~ia~vQ~~~-~--~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~-------~~-~~~~~~~~~~~~~l   73 (121)
                      +.||||++|+.+ .  .+.+.|++++.+++++|+++|+|||||||+++ +||....       .. ........+..+.+
T Consensus         2 ~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l-~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (303)
T d1uf5a_           2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELAL-TTFFPRWHFTDEAELDSFYETEMPGPVVRPL   80 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTT-SCCGGGSCCCCHHHHHTTSBSSSSCTTTHHH
T ss_pred             cEEEEEEEccCCcCCCcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCcc-ccCCccccccchhHHhhhhhhhcCCHHHHHH
Confidence            579999999975 2  68999999999999999999999999999998 7875421       11 12233567889999


Q ss_pred             HHHHHHcCcEEEeccceeec-CCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342           74 CSLARESSMWLSLGGFQEKG-SDDARLCNTHVLLDDAGNIRSTYRKIHL  121 (121)
Q Consensus        74 ~~~a~~~~~~ii~G~~~~~~-~~~~~~~Ns~~~i~~~G~i~~~y~K~hL  121 (121)
                      +++|+++++++++|+.+... ..++++||++++|+|+|++++.|+|+||
T Consensus        81 ~~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L  129 (303)
T d1uf5a_          81 FEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHL  129 (303)
T ss_dssp             HHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred             HHHHHhcCceEEEEeeeeeeecCCCeeEEEEEeeccccccccccccccC
Confidence            99999999999999765421 2456899999999999999999999997

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.96  E-value=0.095  Score=33.21  Aligned_cols=68  Identities=12%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCC-ceEEEEEEECC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDD  108 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~  108 (121)
                      ..+.++.+|+|+++.|=.+. ..               .....++..|.+++++++.....-.  +++ .++=.+.+++|
T Consensus       154 ~~~~~~~~ga~lil~p~~~~-~~---------------~~~~~~~~rA~en~~~vv~~n~~G~--~~~~~~~G~S~i~~p  215 (262)
T d1j31a_         154 SARTLALKGAEIIAHPANLV-MP---------------YAPRAMPIRALENRVYTITADRVGE--ERGLKFIGKSLIASP  215 (262)
T ss_dssp             HHHHHHHTTCSEEEEECCCC-SS---------------CHHHHHHHHHHHHTCEEEEECCCSE--ETTEECCCCCEEECT
T ss_pred             HHHHHHHhccccccCCcccc-cc---------------cchhhhhhhhhcccceEEEEecccc--cCCccccCCCEEEeC
Confidence            34555678999999984332 11               1123456668899999865432211  222 23344678999


Q ss_pred             CCCEEee
Q 033342          109 AGNIRST  115 (121)
Q Consensus       109 ~G~i~~~  115 (121)
                      +|+++..
T Consensus       216 ~G~~l~~  222 (262)
T d1j31a_         216 KAEVLSI  222 (262)
T ss_dssp             TSCEEEE
T ss_pred             CCCEEEE
Confidence            9998754

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=93.25  E-value=0.14  Score=33.02  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=42.5

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+.++.+|+++++.|=.+. ............  ........++..|.+++++++....... .++..++=.+.+++|+
T Consensus       179 ~~~~la~~Ga~ii~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~arA~en~~~vv~~n~~g~-~~~~~~~G~S~I~~p~  254 (303)
T d1uf5a_         179 AWRVMGLRGAEIICGGYNTP-THNPPVPQHDHL--TSFHHLLSMQAGSYQNGAWSAAAGKAGM-EENCMLLGHSCIVAPT  254 (303)
T ss_dssp             HHHHHHHTTCSEEEEEECCB-SCCTTCGGGGGG--HHHHHHHHHHHHHHHHTCEEEEEEBCEE-ETTEEECCCCEEECTT
T ss_pred             hhhhHhhCCCEEEEEecccc-ccCCcccccchh--hcchhhhhhhhhhhcccceeeecccccc-ccccccccCcEEEeCC
Confidence            34445678999999765443 221111000000  0011222344557788999865433221 1333344456899999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       255 G~vla~  260 (303)
T d1uf5a_         255 GEIVAL  260 (303)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            998753

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.21  E-value=0.091  Score=33.37  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342           30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA  109 (121)
Q Consensus        30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~  109 (121)
                      ..+.++..++|+|+.|=... ..        ..   .......++..|.+++++++..........+..++=.+++++|+
T Consensus       168 ~~~~~~~~ga~~i~~p~a~~-~~--------~~---~~~~~~~~~~~a~~~~~~~~~~n~~g~~~~~~~~~G~S~I~~P~  235 (271)
T d1emsa2         168 LSLWNRKRGAQLLSFPSAFT-LN--------TG---LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPW  235 (271)
T ss_dssp             HHHHHHHTTCSEEECCBCCC-HH--------HH---HHHHHHHHHHHHHHHTCEEEECBBEEEEETTEEEECCCEEECTT
T ss_pred             HHHHHHhhcCcEEEeccccc-cc--------cc---chhHHHHHHHHHhhhccccccccccccCCCCCEEeeeeEEEcCC
Confidence            34556688999999994332 10        00   11223445777888899887765432211222344456788999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       236 G~il~~  241 (271)
T d1emsa2         236 GAVVAQ  241 (271)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            998754

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.70  E-value=0.22  Score=31.51  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=42.0

Q ss_pred             HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCC-ceEEEEEEECCC
Q 033342           31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDA  109 (121)
Q Consensus        31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~  109 (121)
                      .+.+..++++++++|=.+.   ....         .......+...|.+++++++....... ..++ .++=.+.+++|+
T Consensus       177 ~r~~~~~~~~~i~~~~~~~---~~~~---------~~~~~~~~~~rA~en~~~vv~~n~~g~-~~~~~~~~G~S~Ii~p~  243 (281)
T d1f89a_         177 AMLSARKGAFAMIYPSAFN---TVTG---------PLHWHLLARSRAVDNQVYVMLCSPARN-LQSSYHAYGHSIVVDPR  243 (281)
T ss_dssp             HHHHHHTTEEEEEEECCCB---TTHH---------HHHHHHHHHHHHHHHTSEEEEECCCCC-TTSSSCBCCCCEEECTT
T ss_pred             hhhhhcccccceeEeeccc---cccc---------cccccchhhhhcccccccceeeeeccc-CCCCcEeeeceEEEcCC
Confidence            3445678899999985432   1100         011233456678889998876643321 1222 233456889999


Q ss_pred             CCEEee
Q 033342          110 GNIRST  115 (121)
Q Consensus       110 G~i~~~  115 (121)
                      |+++..
T Consensus       244 G~vl~~  249 (281)
T d1f89a_         244 GKIVAE  249 (281)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            998753

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=1.2  Score=25.10  Aligned_cols=19  Identities=11%  Similarity=0.179  Sum_probs=15.9

Q ss_pred             EEEEEEECCCCCEEeeeec
Q 033342          100 CNTHVLLDDAGNIRSTYRK  118 (121)
Q Consensus       100 ~Ns~~~i~~~G~i~~~y~K  118 (121)
                      ..+.++|+|+|++++.|..
T Consensus       124 ~~~~~LId~~G~i~~~~~~  142 (160)
T d1wp0a1         124 TIIMYLIGPDGEFLDYFGQ  142 (160)
T ss_dssp             CCEEEEECTTSCEEEEEET
T ss_pred             cceEEEECCCCcEEEEECC
Confidence            3577999999999998864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.00  E-value=0.48  Score=29.68  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=41.0

Q ss_pred             HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342           34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR  113 (121)
Q Consensus        34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~  113 (121)
                      |...+++++++=|=..  +        +.........+.+.++.+++++.+++-+..- . .- ++-+..+++. +|+++
T Consensus       159 aL~~~P~lLllDEPTs--~--------LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~-~a-~~~drv~~m~-~G~Iv  224 (230)
T d1l2ta_         159 ALANNPPIILADQPTG--A--------LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VA-RFGERIIYLK-DGEVE  224 (230)
T ss_dssp             HHTTCCSEEEEESTTT--T--------SCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-H-HH-TTSSEEEEEE-TTEEE
T ss_pred             hhhcCCCEEEecCCcc--c--------cCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-H-HH-HhCCEEEEEE-CCEEE
Confidence            3445777777777543  1        1111234567778888889898877665332 1 22 3567777886 79885


Q ss_pred             e
Q 033342          114 S  114 (121)
Q Consensus       114 ~  114 (121)
                      .
T Consensus       225 ~  225 (230)
T d1l2ta_         225 R  225 (230)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of TRAS1 retrotransposon (ORF2)
species: Silkworm (Bombyx mori) [TaxId: 7091]

Probab=80.89  E-value=1.6  Score=25.88  Aligned_cols=36  Identities=22%  Similarity=0.179  Sum_probs=23.0

Q ss_pred             EEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342           10 AVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFS   49 (121)
Q Consensus        10 a~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~   49 (121)
                      .++|.|......    +..++.......++|||++.|++.
T Consensus         4 rV~~~Nv~~~~~----~~~~l~~~i~~~~~DIi~lQE~~~   39 (228)
T d1wdua_           4 RVLQANLQRKKL----ATAELAIEAATRKAAIALIQEPYV   39 (228)
T ss_dssp             EEEEEECTTCHH----HHHHHHHHHHHHTCSEEEEESCCC
T ss_pred             EEEeeccCCChH----HHHHHHHHHHhcCCCEEEEECCCc
Confidence            456777654332    233444445567999999999875