Citrus Sinensis ID: 033371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MSNIVKEAWRKYLIQLQVhplrtkaiTAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFdfgygvpfghFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS
Flexible Loop (DISEMBL)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS
Low Complexity Region (SEG)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVkklqlkrllllmlFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS
Disordered region (IsUnstruct)
***IVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVEN*****
Disordered Region (DISOPRED)
****VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL*ENH****
Disordered Region (DISEMBL)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS
Disordered Region (DISPRO)
*SNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVEN*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q9ZS51	190	Peroxisomal membrane prot	no	no	0.9	0.568	0.559	2e-28
Q54FR4	185	PXMP2/4 family protein 4	yes	no	0.916	0.594	0.342	1e-10
Q54XX9	193	PXMP2/4 family protein 2	no	no	0.941	0.585	0.316	2e-09
Q66GV0	177	Protein Mpv17 OS=Xenopus	N/A	no	0.766	0.519	0.336	2e-07
P19258	176	Protein Mpv17 OS=Mus musc	yes	no	0.933	0.636	0.295	6e-07
Q54GD8	184	PXMP2/4 family protein 3	no	no	0.85	0.554	0.278	9e-07
Q5BK62	176	Protein Mpv17 OS=Rattus n	yes	no	0.933	0.636	0.286	1e-06
Q07066	194	Peroxisomal membrane prot	no	no	0.991	0.613	0.258	2e-06
P39210	176	Protein Mpv17 OS=Homo sap	yes	no	0.933	0.636	0.295	4e-06
Q2KIN6	176	Protein Mpv17 OS=Bos taur	yes	no	0.933	0.636	0.286	4e-06

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 84/109 (77%), Gaps = 1/109 (0%)

Query: 6   KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGV 65
           K   ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG++K+QL+R+LL ++F  G+  
Sbjct: 8   KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query: 66  PFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           P GHF + +LD  FKG +D ++VAKKV+LEQL  SP  + LFM Y+G+V
Sbjct: 68  PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVV 116

May be involved in the metabolism of reactive oxygen species.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 5   VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI----SGVKKLQLKRLLLLMLFD 60
           +K A   YL QL  +P+ TKA+T+G L   SD++ Q I       KK   KR + + +F 
Sbjct: 8   LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFG 67

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVE 114
           F    P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G++E
Sbjct: 68  FAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILE 121

Dictyostelium discoideum (taxid: 44689)

>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 5   VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS-------GVKKLQLKRLLLLM 57
           +++ W  YL  L  HPL TK+++ G L G  D +AQ++           KL  KR+  + 
Sbjct: 1   MRKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMS 60

Query: 58  LFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHG 117
                Y  P  H+  + LD + KG     + KK+L++QL+F+P     FMT    + N G
Sbjct: 61  TVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKG 120

Dictyostelium discoideum (taxid: 44689)

>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+K   ++R + +M   F +  
Sbjct: 5   WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVG 64

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSP 100
           P      K LD I  G       KK+LL+Q+ F+P
Sbjct: 65  PVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAP 99

Involved in mitochondria homeostasis.

Xenopus laevis (taxid: 8355)

>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L ++    G+  
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS 120
           P      K LD +  G       KK+LL+Q  F+P     F+   G++     Q 
Sbjct: 64  PVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVGILNGMSAQD 118

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Mus musculus (taxid: 10090)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 12  YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFL 71
           Y+ +L+  P++TKA+T+  L+  S  +AQK    KK+    ++   ++      P  H+ 
Sbjct: 17  YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGL-ISSPLVHYW 75

Query: 72  NKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVE 114
           +  LD +FK  +D      K++++QL+F+P+IN  F +   +++
Sbjct: 76  HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILD 119

Dictyostelium discoideum (taxid: 44689)

>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L +     G+  
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS 120
           P      + LD +  G    +  KK+LL+Q  F+P     F+   G++     Q 
Sbjct: 64  PVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVGVLNGMSAQD 118

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Rattus norvegicus (taxid: 10116)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKK-----LQLKRLLL 55
           + ++ K A  +YL+ L+ +P+ TKA+++G+L+   + +AQ I   +K     L++  LL 
Sbjct: 14  LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query: 56  LMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVEN 115
            +++      P  H+L  F++         +  K++LL++L F+P    LF     L+E 
Sbjct: 74  YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEG 133

Query: 116 HGVQ 119
             + 
Sbjct: 134 KNIS 137

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

>sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L ++    G+  
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS 120
           P      K LD    G       KK+LL+Q  F+P     F+   G +     Q 
Sbjct: 64  PVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQD 118

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Homo sapiens (taxid: 9606)

>sp|Q2KIN6|MPV17_BOVIN Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G++  Q  R L +     G+  
Sbjct: 4   WRAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHGVQS 120
           P      + LD +  G       KK+LL+Q  F+P     F+   G +     Q 
Sbjct: 64  PVVGGWYRVLDRLIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGTLNGLSAQD 118

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
79325105	185	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.941	0.610	0.754	2e-43
297800820	185	predicted protein [Arabidopsis lyrata su	0.941	0.610	0.745	5e-43
225433201	185	PREDICTED: peroxisomal membrane protein	0.975	0.632	0.672	3e-40
147795757	185	hypothetical protein VITISV_012682 [Viti	0.975	0.632	0.672	4e-40
255575843	176	peroxisomal membrane protein 2, pxmp2, p	0.941	0.642	0.745	4e-38
449520295	183	PREDICTED: LOW QUALITY PROTEIN: peroxiso	0.941	0.617	0.692	8e-38
449458842	183	PREDICTED: peroxisomal membrane protein	0.941	0.617	0.692	8e-38
413921703	181	hypothetical protein ZEAMMB73_715532 [Ze	0.941	0.624	0.657	8e-36
195611428	187	peroxisomal membrane protein PMP22 [Zea	0.941	0.604	0.657	1e-35
115477897	187	Os08g0566900 [Oryza sativa Japonica Grou	0.941	0.604	0.649	3e-35

>gi|79325105|ref|NP_001031637.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|62321523|dbj|BAD95003.1| hypothetical protein [Arabidopsis thaliana] gi|98961831|gb|ABF59245.1| unknown protein [Arabidopsis thaliana] gi|332658013|gb|AEE83413.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 99/114 (86%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS++ K+AWRKYLIQLQ HPLRTKAITAGVLAGCSDAIAQKISGVK++Q +RLLLLML+ 
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLV
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLV 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800820|ref|XP_002868294.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314130|gb|EFH44553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 98/114 (85%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS++ K+AWRKYLIQLQ HPLRTKAITAGVL GCSDAIAQKISGVK++Q +RLLLLML+ 
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLTGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLV
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLV 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433201|ref|XP_002285350.1| PREDICTED: peroxisomal membrane protein PMP22 [Vitis vinifera] gi|296083689|emb|CBI23678.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 98/119 (82%), Gaps = 2/119 (1%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+++K AWR YL+QLQ+HPLRTKAITAGVL GCSD IAQKISG+K+LQL+RL+L+ML+ 
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VENHG 117
           F Y  PFGHFL+K +D IF+G +DN +VAKKV+LEQL  SPW N  FM Y+GL VE  G
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRG 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795757|emb|CAN76530.1| hypothetical protein VITISV_012682 [Vitis vinifera]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 98/119 (82%), Gaps = 2/119 (1%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+++K AWR YL+QLQ+HPLRTKAITAGVL GCSD IAQKISG+K+LQL+RL+L+ML+ 
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VENHG 117
           F Y  PFGHFL+K +D IF+G +DN +VAKKV+LEQL  SPW N  FM Y+GL VE  G
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRG 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575843|ref|XP_002528819.1| peroxisomal membrane protein 2, pxmp2, putative [Ricinus communis] gi|223531731|gb|EEF33553.1| peroxisomal membrane protein 2, pxmp2, putative [Ricinus communis]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 98/114 (85%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+  KEAWRKYLIQLQ HPLRTKAITAGVLAGCSD IAQKISGVK+LQL+RLLL+ L+ 
Sbjct: 1   MSDTAKEAWRKYLIQLQAHPLRTKAITAGVLAGCSDTIAQKISGVKRLQLRRLLLITLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F YG PFGHFL+K +D IFKG +D+K+VAKKVLLEQL+ SPW N  FM Y+GL+
Sbjct: 61  FAYGGPFGHFLHKLMDGIFKGKKDSKTVAKKVLLEQLVSSPWNNMFFMMYYGLI 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520295|ref|XP_004167169.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 95/114 (83%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+IV EAW+ YL+QLQ +PLRTKAITAGVLAG SD++AQKISG+KKLQ +RLLLLML+ 
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F Y  PFGHFL+K +D IFKG+  N +VAKKVLLEQ+  SPW  F+FM Y+GLV
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNXFIFMMYYGLV 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458842|ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 94/114 (82%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+IV EAW+ YL+QLQ +PLRTKAITAGVLAG SD++AQKISG+KKLQ +RLLLLML+ 
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F Y  PFGHFL+K +D IFKG+  N +VAKKVLLEQ+  SPW N  FM Y+GLV
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLV 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413921703|gb|AFW61635.1| hypothetical protein ZEAMMB73_715532 [Zea mays]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 89/114 (78%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS +V  A + Y+ QLQ HPLRTKAIT+GVLAGCSDA+AQKISGV KLQL+RLLL+ L+ 
Sbjct: 1   MSEVVAMAGQAYMKQLQAHPLRTKAITSGVLAGCSDAVAQKISGVSKLQLRRLLLIALYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNK-SVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F Y  PFGHFL+K +D  FKG+  K + AKKVL+EQL  SPW N +FM YFGLV
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYFGLV 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195611428|gb|ACG27544.1| peroxisomal membrane protein PMP22 [Zea mays] gi|413921704|gb|AFW61636.1| peroxisomal membrane protein PMP22 [Zea mays]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 89/114 (78%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS +V  A + Y+ QLQ HPLRTKAIT+GVLAGCSDA+AQKISGV KLQL+RLLL+ L+ 
Sbjct: 1   MSEVVAMAGQAYMKQLQAHPLRTKAITSGVLAGCSDAVAQKISGVSKLQLRRLLLIALYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNK-SVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F Y  PFGHFL+K +D  FKG+  K + AKKVL+EQL  SPW N +FM YFGLV
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYFGLV 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477897|ref|NP_001062544.1| Os08g0566900 [Oryza sativa Japonica Group] gi|42409095|dbj|BAD10346.1| putative peroxisomal membrane protein(22-kDa)(PMP22) [Oryza sativa Japonica Group] gi|113624513|dbj|BAF24458.1| Os08g0566900 [Oryza sativa Japonica Group] gi|215704770|dbj|BAG94798.1| unnamed protein product [Oryza sativa Japonica Group] gi|218201627|gb|EEC84054.1| hypothetical protein OsI_30329 [Oryza sativa Indica Group] gi|222641033|gb|EEE69165.1| hypothetical protein OsJ_28327 [Oryza sativa Japonica Group]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 89/114 (78%), Gaps = 1/114 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS++V  A + Y+ QLQ HPLRTKAIT+GVLAGCSDAIAQKISGV  LQ +RLLL+ML+ 
Sbjct: 1   MSDVVAMAGQAYMRQLQAHPLRTKAITSGVLAGCSDAIAQKISGVPNLQRRRLLLIMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNK-SVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           F Y  PFGHFL+K +D  FKG+  K + AKKVL+EQL  SPW N +FM Y+GLV
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYYGLV 114

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:1009023385	185	AT4G14305 "AT4G14305" [Arabido	0.941	0.610	0.675	2.7e-36
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.9	0.568	0.504	7.8e-23
TAIR|locus:2091767	235	AT3G24570 "AT3G24570" [Arabido	0.441	0.225	0.389	2e-09
DICTYBASE|DDB_G0290631	185	DDB_G0290631 "pmp22 family pro	0.916	0.594	0.315	4.7e-09
DICTYBASE|DDB_G0278529	193	DDB_G0278529 "pmp22 family pro	0.941	0.585	0.283	7.6e-09
ASPGD|ASPL0000063859	252	AN7258 [Emericella nidulans (t	0.85	0.404	0.308	1.7e-07
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.983	0.608	0.252	3.1e-07
UNIPROTKB|G4N5Q6	279	MGG_05292 "Integral membrane p	0.85	0.365	0.299	4.9e-07
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.85	0.554	0.259	7.8e-07
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.983	0.608	0.243	1.6e-06

TAIR|locus:1009023385 AT4G14305 "AT4G14305" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 77/114 (67%), Positives = 87/114 (76%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             MS++ K+AWRKYLIQLQ HPLRTKAITAGVLAGCSDAIAQKISGV             + 
Sbjct:     1 MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query:    61 FGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
             F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLV
Sbjct:    61 FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLV 114

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 55/109 (50%), Positives = 72/109 (66%)

Query:     6 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGV 65
             K   ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG+             F  G+  
Sbjct:     8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query:    66 PFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
             P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V
Sbjct:    68 PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVV 116

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

TAIR|locus:2091767 AT3G24570 "AT3G24570" [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query:    59 FDFGYGVPFGHF----LNKF--LDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFG 111
             F FG+  P GHF    L+KF  L   +  +  + VA KV ++ LIF P    +F TY G
Sbjct:    86 FGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAAKVAMDGLIFGPVDLLVFFTYMG 144

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0290631 DDB_G0290631 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 36/114 (31%), Positives = 58/114 (50%)

Query:     5 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQ--KISGVXXXXXXXXXXXXXFDFG 62
             +K A   YL QL  +P+ TKA+T+G L   SD++ Q  ++S                 FG
Sbjct:     8 LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFG 67

Query:    63 YGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVE 114
             + V  P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G++E
Sbjct:    68 FAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILE 121

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0278529 DDB_G0278529 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 34/120 (28%), Positives = 53/120 (44%)

Query:     5 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS-------GVXXXXXXXXXXXX 57
             +++ W  YL  L  HPL TK+++ G L G  D +AQ++                      
Sbjct:     1 MRKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMS 60

Query:    58 XFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVENHG 117
                  Y  P  H+  + LD + KG     + KK+L++QL+F+P     FMT    + N G
Sbjct:    61 TVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKG 120

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

ASPGD|ASPL0000063859 AN7258 [Emericella nidulans (taxid:162425)]

 Score = 123 (48.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 33/107 (30%), Positives = 52/107 (48%)

Query:    12 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGV----PF 67
             YL QLQ +PLRTK +T+GVL+   + +A  ++                   YG+    P 
Sbjct:    51 YLRQLQSNPLRTKMLTSGVLSSAQEFLASYLANDVSKHGHYFSSRVPKMLLYGMFISAPL 110

Query:    68 GHFLNKFLDAIFKGRDN-KSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
             GH L   L  +F GR + K+   ++L   LI SP  N +++T   ++
Sbjct:   111 GHVLVGILQKVFAGRTSLKAKVLQILASNLIVSPIQNVVYLTCMAII 157

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 31/123 (25%), Positives = 59/123 (47%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             + ++ K A  +YL+ L+++P+ TKA+++G+L+   + +AQ I                  
Sbjct:    14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73

Query:    61 F-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVEN 115
             +  YG+    P  H+L  F++         +  K++LL++L F+P    LF     L+E 
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLLEG 133

Query:   116 HGV 118
               V
Sbjct:   134 KNV 136

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|G4N5Q6 MGG_05292 "Integral membrane protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 120 (47.3 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 32/107 (29%), Positives = 52/107 (48%)

Query:    12 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGV----PF 67
             Y+ QL+ +PLRTK +TAG L+G  + IA  ++                   YG     P 
Sbjct:    69 YIKQLEDNPLRTKMLTAGTLSGAQELIASFLAKDRNKHGNYFTSRVPKMAAYGALVSAPM 128

Query:    68 GHFLNKFLDAIFKGRDN-KSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
             GHFL   L   FK R + ++   ++++  LI +P  N +++T   L+
Sbjct:   129 GHFLIWLLQKAFKNRTSLRAKIMQIIVSNLIIAPIQNSVYLTAMALI 175

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 27/104 (25%), Positives = 52/104 (50%)

Query:    12 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFL 71
             Y+ +L+  P++TKA+T+  L+  S  +AQK                 +      P  H+ 
Sbjct:    17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGL-ISSPLVHYW 75

Query:    72 NKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVE 114
             +  LD +FK  +D      K++++QL+F+P+IN  F +   +++
Sbjct:    76 HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILD 119

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 30/123 (24%), Positives = 58/123 (47%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             + ++ K A  +YL+ L+ +P+ TKA+++G+L+   + +AQ I                  
Sbjct:    14 LGSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    61 F-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVEN 115
             +  YG+    P  H+L  F++         +  K++LL++L F+P    LF     L+E 
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEG 133

Query:   116 HGV 118
               +
Sbjct:   134 KNI 136

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	99.9

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=99.90  E-value=1.8e-23  Score=154.64  Aligned_cols=105  Identities=34%  Similarity=0.574  Sum_probs=97.9

Q ss_pred             HhcCchhHHHHHHHHHH-hHHHHHHHHHhc-----CCcchHHHHHHHHHHhhhchhhhHhHHHHHhhhhcCCCChHHHHH
Q 033371           16 LQVHPLRTKAITAGVLA-GCSDAIAQKISG-----VKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAK   89 (120)
Q Consensus        16 l~~~Pl~t~~~t~~~l~-~~gD~laQ~~~~-----~~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~~~~~~~   89 (120)
                      ...+|+.+++++++.+. .+||+++|.++.     .+++|+.|++||+++|+++.||.+|+||+.||+.+|.++..++++
T Consensus        46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~  125 (222)
T KOG1944|consen   46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK  125 (222)
T ss_pred             hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence            46788888999988888 999999999964     257899999999999988999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 033371           90 KVLLEQLIFSPWINFLFMTYFGLVENHGVQS  120 (120)
Q Consensus        90 Kvl~Dq~i~~P~~~~~f~~~~~~leg~~~~~  120 (120)
                      |++.||++++|+.+.+|+.+++++||++.+|
T Consensus       126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~  156 (222)
T KOG1944|consen  126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEE  156 (222)
T ss_pred             HHHHhhhhhchHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00