Citrus Sinensis ID: 033379
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 120 | ||||||
| 224131794 | 117 | predicted protein [Populus trichocarpa] | 0.966 | 0.991 | 0.777 | 8e-48 | |
| 255581804 | 114 | hydrolase, hydrolyzing O-glycosyl compou | 0.883 | 0.929 | 0.757 | 3e-42 | |
| 296085010 | 117 | unnamed protein product [Vitis vinifera] | 0.8 | 0.820 | 0.814 | 1e-41 | |
| 356562519 | 116 | PREDICTED: glucan endo-1,3-beta-glucosid | 0.958 | 0.991 | 0.658 | 3e-41 | |
| 302121698 | 142 | glycosyl hydrolase 2 [Hypericum perforat | 0.8 | 0.676 | 0.783 | 5e-41 | |
| 302121696 | 142 | glycosyl hydrolase 1 [Hypericum perforat | 0.8 | 0.676 | 0.783 | 5e-41 | |
| 118481810 | 119 | unknown [Populus trichocarpa] | 0.908 | 0.915 | 0.681 | 2e-40 | |
| 224086520 | 118 | predicted protein [Populus trichocarpa] | 0.908 | 0.923 | 0.681 | 3e-40 | |
| 388505254 | 118 | unknown [Lotus japonicus] | 0.966 | 0.983 | 0.661 | 7e-40 | |
| 15238600 | 119 | carbohydrate-binding X8 domain-containin | 0.833 | 0.840 | 0.745 | 4e-39 |
| >gi|224131794|ref|XP_002321180.1| predicted protein [Populus trichocarpa] gi|222861953|gb|EEE99495.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 101/117 (86%), Gaps = 1/117 (0%)
Query: 5 MSIVLLRIMLALLATSVITPKSNGENEQWCIADEQTPDDELQAAMDWACGNG-ADCSKIQ 63
M I+ R MLALL S+ KS+GE EQWCIADEQTPDDELQ A+DWACG G ADCSKIQ
Sbjct: 1 MPILWKRTMLALLILSIAPRKSDGELEQWCIADEQTPDDELQIALDWACGKGGADCSKIQ 60
Query: 64 MNQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVITELDPSHNSCRYEFIP 120
+NQPCY PNT RDHASYAFN+YFQKFK+KGGSCYFKGAA+ITELDPSH+SC+YEF P
Sbjct: 61 VNQPCYLPNTVRDHASYAFNNYFQKFKHKGGSCYFKGAAIITELDPSHSSCQYEFHP 117
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581804|ref|XP_002531703.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gi|223528679|gb|EEF30694.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|296085010|emb|CBI28425.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356562519|ref|XP_003549517.1| PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|302121698|gb|ADK92864.1| glycosyl hydrolase 2 [Hypericum perforatum] | Back alignment and taxonomy information |
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| >gi|302121696|gb|ADK92862.1| glycosyl hydrolase 1 [Hypericum perforatum] | Back alignment and taxonomy information |
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| >gi|118481810|gb|ABK92842.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224086520|ref|XP_002307902.1| predicted protein [Populus trichocarpa] gi|222853878|gb|EEE91425.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388505254|gb|AFK40693.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|15238600|ref|NP_198423.1| carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana] gi|9758649|dbj|BAB09273.1| unnamed protein product [Arabidopsis thaliana] gi|21537028|gb|AAM61369.1| unknown [Arabidopsis thaliana] gi|89000947|gb|ABD59063.1| At5g35740 [Arabidopsis thaliana] gi|332006630|gb|AED94013.1| carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 120 | ||||||
| TAIR|locus:2177256 | 119 | AT5G35740 "AT5G35740" [Arabido | 0.966 | 0.974 | 0.714 | 3.1e-44 | |
| TAIR|locus:2045029 | 124 | AT2G04910 "AT2G04910" [Arabido | 0.708 | 0.685 | 0.581 | 1.4e-25 | |
| TAIR|locus:2206355 | 397 | AT1G79480 [Arabidopsis thalian | 0.8 | 0.241 | 0.468 | 2.3e-23 | |
| TAIR|locus:2092855 | 505 | AT3G13560 [Arabidopsis thalian | 0.741 | 0.176 | 0.483 | 2.6e-21 | |
| TAIR|locus:2013728 | 315 | AT1G29380 "AT1G29380" [Arabido | 0.7 | 0.266 | 0.546 | 3.9e-21 | |
| TAIR|locus:2118339 | 534 | AT4G29360 [Arabidopsis thalian | 0.858 | 0.192 | 0.451 | 5.1e-21 | |
| TAIR|locus:2140882 | 231 | AT4G13600 [Arabidopsis thalian | 0.7 | 0.363 | 0.523 | 1.3e-20 | |
| TAIR|locus:2158571 | 380 | AT5G67460 [Arabidopsis thalian | 0.758 | 0.239 | 0.473 | 5.8e-20 | |
| TAIR|locus:2115919 | 143 | AT4G05430 "AT4G05430" [Arabido | 0.816 | 0.685 | 0.431 | 1.2e-19 | |
| TAIR|locus:2164991 | 506 | AT5G56590 [Arabidopsis thalian | 0.758 | 0.179 | 0.456 | 1.9e-19 |
| TAIR|locus:2177256 AT5G35740 "AT5G35740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 85/119 (71%), Positives = 100/119 (84%)
Query: 5 MSIVLLRIMLALLATSVITPK-SNGENEQWCIADEQTPDDELQAAMDWACGNG-ADCSKI 62
MS L+RI+L LL ++ P+ S E+EQWCIADEQTPDDELQAA+DWACG G ADCSK+
Sbjct: 1 MSTFLIRILLPLLIIAMTLPRRSEAESEQWCIADEQTPDDELQAALDWACGKGGADCSKM 60
Query: 63 QM-NQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVITELDPSHNSCRYEFIP 120
Q NQPC+ PNT RDHAS+AFNSY+Q +KNKGGSCYFKGAA+ITELDPSH SC+YE+ P
Sbjct: 61 QQENQPCFLPNTIRDHASFAFNSYYQTYKNKGGSCYFKGAAMITELDPSHGSCQYEYNP 119
|
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| TAIR|locus:2045029 AT2G04910 "AT2G04910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2206355 AT1G79480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2092855 AT3G13560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013728 AT1G29380 "AT1G29380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118339 AT4G29360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2140882 AT4G13600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2158571 AT5G67460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115919 AT4G05430 "AT4G05430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2164991 AT5G56590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 120 | |||
| smart00768 | 85 | smart00768, X8, Possibly involved in carbohydrate | 2e-41 | |
| pfam07983 | 77 | pfam07983, X8, X8 domain | 5e-24 |
| >gnl|CDD|197867 smart00768, X8, Possibly involved in carbohydrate binding | Back alignment and domain information |
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Score = 131 bits (332), Expect = 2e-41
Identities = 45/85 (52%), Positives = 55/85 (64%)
Query: 32 QWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSYFQKFKN 91
WC+A + LQAA+D+ACG GADC+ IQ CY PNT + HASYAFNSY+QK
Sbjct: 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQ 60
Query: 92 KGGSCYFKGAAVITELDPSHNSCRY 116
G+C F G A IT DPS SC++
Sbjct: 61 SSGACDFSGTATITTTDPSTGSCKF 85
|
The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. Length = 85 |
| >gnl|CDD|219681 pfam07983, X8, X8 domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 120 | |||
| smart00768 | 85 | X8 Possibly involved in carbohydrate binding. The | 100.0 | |
| PF07983 | 78 | X8: X8 domain; InterPro: IPR012946 The X8 domain [ | 99.94 |
| >smart00768 X8 Possibly involved in carbohydrate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=202.36 Aligned_cols=85 Identities=53% Similarity=1.036 Sum_probs=82.8
Q ss_pred cceeecCCCChHHHHHHHHHhhcCCCCCcccCCCCCcCCCCChhhhHhHHHHHHHHhhcCCCCCCccCceeEEEecCCCC
Q 033379 32 QWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVITELDPSH 111 (120)
Q Consensus 32 ~wCV~k~~~~~~~l~~~ldyaCg~~~dCs~I~~~g~Cy~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~l~t~dps~ 111 (120)
+|||+|+++++++||++|||||++++||++|++||+||+|+++++|||||||+|||++++.+++|||+|.|+++++||+.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 59999999999999999999999769999999999999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 033379 112 NSCRY 116 (120)
Q Consensus 112 ~sC~f 116 (120)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
|
The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
| >PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 120 | ||||
| 2jon_A | 101 | Solution Structure Of The C-Terminal Domain Ole E 9 | 3e-14 |
| >pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 Length = 101 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 120 | |||
| 2jon_A | 101 | Beta-1,3-glucanase; olive pollen, allergen; NMR {O | 1e-39 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 2e-13 |
| >2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Length = 101 | Back alignment and structure |
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Score = 127 bits (320), Expect = 1e-39
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 24 PKSNGENEQWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFN 83
+ WC+ DD+L +++AC G DC IQ C+ PNT + HA+Y N
Sbjct: 4 TPTPKAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMN 63
Query: 84 SYFQKFKNKGGSCYFKGAAVITELDPSHNSCRY 116
Y+Q +C F A +T +PS+ +C +
Sbjct: 64 LYYQHAGRNSWNCDFSQTATLTNTNPSYGACNF 96
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Length = 555 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 120 | |||
| 2jon_A | 101 | Beta-1,3-glucanase; olive pollen, allergen; NMR {O | 100.0 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 99.93 |
| >2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=226.15 Aligned_cols=94 Identities=31% Similarity=0.696 Sum_probs=89.6
Q ss_pred CCCCccceeecCCCChHHHHHHHHHhhcCCCCCcccCCCCCcCCCCChhhhHhHHHHHHHHhhcCCCCCCccCceeEEEe
Q 033379 27 NGENEQWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVITE 106 (120)
Q Consensus 27 ~~~~~~wCV~k~~~~~~~l~~~ldyaCg~~~dCs~I~~~g~Cy~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~l~t 106 (120)
...+++|||+|+++++++||++|||||++++||++|++||+||+|+++++|+|||||+|||++++..++|||+|+|+|++
T Consensus 7 ~~~~~~wCVak~~~~~~~l~~~ldyACg~gaDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~ 86 (101)
T 2jon_A 7 PKAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTN 86 (101)
T ss_dssp CCCCSCEEEECTTSCHHHHHHHHHHHTTTSSSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEES
T ss_pred CCCCCcEEEECCCCCHHHHHHHHHHHcCCCCCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEee
Confidence 35578999999999999999999999997789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeccCC
Q 033379 107 LDPSHNSCRYEFIP 120 (120)
Q Consensus 107 ~dps~~sC~f~~~~ 120 (120)
+|||+++|+|+++.
T Consensus 87 ~dPS~g~C~f~~~~ 100 (101)
T 2jon_A 87 TNPSYGACNFPSGS 100 (101)
T ss_dssp SCCCCSSSCCCCSC
T ss_pred cCCCCCceecCCCC
Confidence 99999999999763
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00