Citrus Sinensis ID: 033383

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mwklkqlvagdeereesfledesdgicslSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLlavgstafvigpaqQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Flexible Loop (DISEMBL)
mwklkqlvagdeereesfledesdGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Low Complexity Region (SEG)
MWKLKQLVAGdeereesfledesdGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Disordered region (IsUnstruct)
************************GICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVS***
Disordered Region (DISOPRED)
****K*******************GICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK*
Disordered Region (DISEMBL)
***********************DGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Disordered Region (DISPRO)
*******VA******ESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
O95562	160	Vesicle transport protein	yes	no	0.916	0.687	0.347	5e-15
Q8VD57	159	Vesicle transport protein	yes	no	0.933	0.704	0.341	2e-14
Q5SSN7	159	Vesicle transport protein	no	no	0.925	0.698	0.347	2e-13
Q5U3Y5	159	Vesicle transport protein	yes	no	0.925	0.698	0.347	9e-13
Q8WV19	159	Vesicle transport protein	no	no	0.925	0.698	0.356	2e-12
Q4FZV2	157	Vesicle transport protein	no	no	0.8	0.611	0.333	1e-05

>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query: 3   KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
           KLK++++G +  + S L +  +   SLS++ R+  F AC   G++C  L  ++   P K 
Sbjct: 3   KLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKG 61

Query: 62  ---FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICA 113
              FA+ +TFGN+ ++GST F++GP +Q+  MF+  R+ AT + L+C  + L  A
Sbjct: 62  LHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSA 116

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.
Homo sapiens (taxid: 9606)

>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 3   KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
           KLK++++G +  + S L +  +   SLS+  R+  F AC   G++C  L  ++   P K 
Sbjct: 3   KLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKG 61

Query: 62  ---FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALL 115
              FA+ +T GN++++GST F++GP +Q+  MF+  R+ AT + L+C  + L  A L
Sbjct: 62  LGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLCSAFL 118

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 4/115 (3%)

Query: 3   KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
           KL+++++G ++ E+       D   SLS+  R+  F  C +AG+   FL   +   P   
Sbjct: 3   KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGM 61

Query: 62  --FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
             FA+ +T GNL A+ ST F++GP +Q+  MF++ R+ AT + L+C+V  L  AL
Sbjct: 62  KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAAL 116

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 4/115 (3%)

Query: 3   KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP--I 60
           KL+++++G ++ E+       D   SLS+  R+  F  C +AG+    L   +   P  +
Sbjct: 3   KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGV 61

Query: 61  K-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
           K FA+ +T GNL A+ ST F++GP +Q+  MF++ R+ AT + L+C+V  L  AL
Sbjct: 62  KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAAL 116

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Rattus norvegicus (taxid: 10116)

>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 4/115 (3%)

Query: 3   KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP--I 60
           KL+++++G ++ E+       D   SLS+  R+  FA C + G+    L   +   P  I
Sbjct: 3   KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGI 61

Query: 61  K-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
           K FA+ +T GNL A+ ST F++GP +Q+  MF++ R+ AT V L+C +  L  AL
Sbjct: 62  KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAAL 116

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 3   KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVF--VRPI 60
           KLK++++G +  + S L +  +   SLS++ R+  F  C   G++C  L  ++    R  
Sbjct: 3   KLKKVLSGQDTEDRSGLSEVVE-SSSLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKG 61

Query: 61  KFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYAT 99
            FA+ +T GN+ ++GST F++GP +Q+  MF+  R+ AT
Sbjct: 62  LFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIAT 100

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
255544984	215	Vesicle transport protein SFT2A, putativ	0.991	0.553	0.705	5e-40
225455094	160	PREDICTED: vesicle transport protein SFT	0.983	0.737	0.675	4e-39
217071622	162	unknown [Medicago truncatula] gi|3885211	0.991	0.734	0.661	5e-38
351727108	161	uncharacterized protein LOC100527819 [Gl	0.991	0.739	0.625	7e-38
224120726	161	predicted protein [Populus trichocarpa]	0.991	0.739	0.658	8e-37
449455944	160	PREDICTED: vesicle transport protein SFT	0.991	0.743	0.596	7e-36
224132890	161	predicted protein [Populus trichocarpa]	0.991	0.739	0.716	3e-35
297812583	163	hypothetical protein ARALYDRAFT_489277 [	0.991	0.730	0.614	6e-35
224028685	156	unknown [Zea mays] gi|224031671|gb|ACN34	0.941	0.724	0.637	4e-33
226499158	165	SFT2 domain containing 2 [Zea mays] gi|1	0.95	0.690	0.632	6e-33

>gi|255544984|ref|XP_002513553.1| Vesicle transport protein SFT2A, putative [Ricinus communis] gi|223547461|gb|EEF48956.1| Vesicle transport protein SFT2A, putative [Ricinus communis]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 98/119 (82%)

Query: 1   MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
           M KLKQ ++GD+  E    ++ESD  CSLS TQRMYAFAACL+AGL  MFLS+IV +RPI
Sbjct: 1   MQKLKQFISGDDGEEGLLDDEESDSYCSLSPTQRMYAFAACLVAGLASMFLSVIVLLRPI 60

Query: 61  KFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           KFA+LFTFGNLLAVGSTAF+IGPAQQ+ MMFDSARIYAT VY+  VV+ALICAL +  K
Sbjct: 61  KFAVLFTFGNLLAVGSTAFLIGPAQQLRMMFDSARIYATAVYIGFVVMALICALWIVAK 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455094|ref|XP_002267997.1| PREDICTED: vesicle transport protein SFT2B [Vitis vinifera] gi|302144038|emb|CBI23143.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 95/120 (79%), Gaps = 2/120 (1%)

Query: 1   MWKLKQ-LVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
           MW L Q ++ G+EE  E +LED SDG+C+LS  QRMY FAACL+AG  CM LS+IVF +P
Sbjct: 1   MWNLGQSILGGNEEDREEYLED-SDGLCNLSPVQRMYGFAACLVAGFACMLLSLIVFAKP 59

Query: 60  IKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           IKFA+LFTFGNLLAVGSTAF+IGP QQI MMFD  RIYAT +Y+  VVIALICAL +  K
Sbjct: 60  IKFAVLFTFGNLLAVGSTAFLIGPVQQIRMMFDPVRIYATAIYIGFVVIALICALWIHNK 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071622|gb|ACJ84171.1| unknown [Medicago truncatula] gi|388521121|gb|AFK48622.1| unknown [Medicago truncatula]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 98/121 (80%), Gaps = 2/121 (1%)

Query: 1   MWK-LKQLVAGD-EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVR 58
           MWK L + ++GD EE+EES L + S G+ SL+ TQRMY FAACL+AGL  M LS+IVF +
Sbjct: 1   MWKKLGESLSGDNEEQEESLLGEGSGGLSSLTTTQRMYGFAACLIAGLALMLLSMIVFAK 60

Query: 59  PIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL 118
           PIKFA+LFTFGNL AVGSTAF++GPAQQ+ MMFD  R++AT +YL CVVIALICALL+  
Sbjct: 61  PIKFAVLFTFGNLSAVGSTAFLLGPAQQMEMMFDPVRVFATAIYLGCVVIALICALLIHS 120

Query: 119 K 119
           K
Sbjct: 121 K 121

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727108|ref|NP_001237917.1| uncharacterized protein LOC100527819 [Glycine max] gi|255633298|gb|ACU17006.1| unknown [Glycine max]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 95/120 (79%), Gaps = 1/120 (0%)

Query: 1   MWKLKQLVAGD-EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
           MW + + + GD E++EE  L ++S G+CSLS TQR+Y FA+CL+AGL CM LS+IVF +P
Sbjct: 1   MWNIARTLTGDNEDQEEGLLGEDSGGLCSLSTTQRIYGFASCLVAGLACMLLSMIVFAKP 60

Query: 60  IKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           IKFA LFTFGNLLAVGSTAF++GPAQQ+ MM D  R++AT +YL CV IALICAL +  K
Sbjct: 61  IKFAALFTFGNLLAVGSTAFLLGPAQQLGMMVDPVRVFATAIYLGCVAIALICALWIHSK 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120726|ref|XP_002318402.1| predicted protein [Populus trichocarpa] gi|222859075|gb|EEE96622.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 1   MWKLKQLVAGDEEREESFLEDE-SDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
           MWKL   ++GD+E  E    +E SDG+CSLS TQRMYAFAA L+AGL  MFLS+IVF +P
Sbjct: 1   MWKLNHFLSGDDEEREESFLEEESDGLCSLSPTQRMYAFAASLVAGLALMFLSLIVFAKP 60

Query: 60  IKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           IK+A+LFTFGN+LAVGSTAF+IGP +Q+ MMFD ARIYAT +Y+ C+V+ALICALL++ K
Sbjct: 61  IKYALLFTFGNVLAVGSTAFLIGPGRQLGMMFDPARIYATAIYIGCIVLALICALLINSK 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455944|ref|XP_004145710.1| PREDICTED: vesicle transport protein SFT2B-like [Cucumis sativus] gi|449507616|ref|XP_004163083.1| PREDICTED: vesicle transport protein SFT2B-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 91/119 (76%)

Query: 1   MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
           MWKL + V  DEER +S L+++S+ +CSL+  QR+YAF  CL  G+VCM LS++VF +P+
Sbjct: 1   MWKLSEGVFVDEERSQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMILSLLVFAKPL 60

Query: 61  KFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           K A+LF FGN+LAVGST F+ GP QQI MMFDS RI AT +YL CVV+ALICAL +  K
Sbjct: 61  KLAVLFAFGNVLAVGSTTFLFGPRQQIRMMFDSVRILATAIYLGCVVLALICALWIHNK 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132890|ref|XP_002321435.1| predicted protein [Populus trichocarpa] gi|222868431|gb|EEF05562.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 101/120 (84%), Gaps = 1/120 (0%)

Query: 1   MWKLKQLVAGDE-EREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP 59
           MWKL Q + GD+ EREESFLE+ESDGI SLS TQRMYAFAA L AGL+ MFLS+IVF +P
Sbjct: 1   MWKLNQFIPGDDGEREESFLEEESDGIFSLSPTQRMYAFAASLAAGLILMFLSLIVFAKP 60

Query: 60  IKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           IKFA+LFTFGN+LAVGSTAF+IGP +Q+ MMFD  RIYAT +Y+ CVV+ALI ALL+  K
Sbjct: 61  IKFALLFTFGNVLAVGSTAFLIGPGRQLGMMFDPVRIYATVIYIGCVVLALIFALLIHSK 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812583|ref|XP_002874175.1| hypothetical protein ARALYDRAFT_489277 [Arabidopsis lyrata subsp. lyrata] gi|297320012|gb|EFH50434.1| hypothetical protein ARALYDRAFT_489277 [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 94/122 (77%), Gaps = 3/122 (2%)

Query: 1   MWKLKQLVAGD---EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV 57
           M KL    +G    EE  +SFLE+ S+G+C+LS TQRMY FAA L  GL+ MFLS+IVF 
Sbjct: 1   MQKLNDFFSGGGDGEETTDSFLEEGSEGLCALSTTQRMYGFAASLATGLLLMFLSMIVFG 60

Query: 58  RPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVS 117
            PIKFA+LFTFGN+LA+GSTAF++GP QQ+NMMFD  R  AT++Y+ CVV+ALICALL+ 
Sbjct: 61  IPIKFALLFTFGNVLAIGSTAFLMGPEQQMNMMFDPVRFLATSIYIGCVVVALICALLIH 120

Query: 118 LK 119
            K
Sbjct: 121 SK 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224028685|gb|ACN33418.1| unknown [Zea mays] gi|224031671|gb|ACN34911.1| unknown [Zea mays] gi|413947765|gb|AFW80414.1| hypothetical protein ZEAMMB73_141907 [Zea mays] gi|413947766|gb|AFW80415.1| hypothetical protein ZEAMMB73_141907 [Zea mays]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 90/116 (77%), Gaps = 3/116 (2%)

Query: 5   KQLVAGDEER--EESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKF 62
           + LV GD+E   E+S L D  D +CSLS  QR+YAFAACL+AGL  M LS IVF RPIKF
Sbjct: 9   RSLVGGDDEDQPEDSILADTED-LCSLSPLQRIYAFAACLVAGLTLMILSFIVFARPIKF 67

Query: 63  AILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL 118
           A++FTFGN+LAVGSTAFV+GP +Q+ MMFD  R+YAT VY+ CVV+ALI AL V +
Sbjct: 68  AVMFTFGNILAVGSTAFVMGPQKQLRMMFDPVRLYATAVYVGCVVLALIFALWVRI 123

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499158|ref|NP_001149679.1| SFT2 domain containing 2 [Zea mays] gi|195629360|gb|ACG36321.1| SFT2 domain containing 2 [Zea mays]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 5   KQLVAGDEE--REESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKF 62
           + LV GD+E   E+S L D  D +CSLS  QR+YAFAACL+AGL  M LS IVF RPIKF
Sbjct: 9   RSLVGGDDEDQSEDSILADTED-LCSLSPLQRIYAFAACLVAGLTLMILSFIVFARPIKF 67

Query: 63  AILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
           A++FTFGN+LAVGSTAFV+GP +Q+ MMFD  R+YAT VY+ CVV+ALI AL +  K
Sbjct: 68  AVMFTFGNILAVGSTAFVMGPQKQLRMMFDPVRLYATAVYVGCVVLALIFALWIHDK 124

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2151837	163	AT5G24170 "AT5G24170" [Arabido	0.791	0.582	0.663	6.2e-30
TAIR|locus:2171706	175	AT5G23550 "AT5G23550" [Arabido	0.775	0.531	0.591	5.2e-26
DICTYBASE|DDB_G0291055	158	DDB_G0291055 "SFT2 family prot	0.741	0.563	0.404	4.7e-16
UNIPROTKB|F1PKN6	140	SFT2D2 "Uncharacterized protei	0.766	0.657	0.385	1.1e-14
UNIPROTKB|O95562	160	SFT2D2 "Vesicle transport prot	0.933	0.7	0.333	3e-14
UNIPROTKB|F1RPV2	159	SFT2D2 "Uncharacterized protei	0.95	0.716	0.344	4.9e-14
MGI|MGI:1917362	159	Sft2d2 "SFT2 domain containing	0.95	0.716	0.327	7.9e-14
UNIPROTKB|F6RF48	160	SFT2D2 "Uncharacterized protei	0.933	0.7	0.341	1.6e-13
UNIPROTKB|F1SBY3	159	SFT2D1 "Uncharacterized protei	0.941	0.710	0.333	2.7e-13
UNIPROTKB|Q3SYY5	159	SFT2D1 "SFT2 domain containing	0.941	0.710	0.333	4.4e-13

TAIR|locus:2151837 AT5G24170 "AT5G24170" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/95 (66%), Positives = 79/95 (83%)

Query:    25 GICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPA 84
             G+C+LS TQRMY FAA L  GL+ MFLS+IVF  PIKFA+LFTFGN+LA+GSTAF++GP 
Sbjct:    28 GLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLFTFGNVLAIGSTAFLMGPE 87

Query:    85 QQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
             QQ++MMFD  R  AT++Y+ CVV+ALICALL+  K
Sbjct:    88 QQMSMMFDPVRFLATSIYIGCVVVALICALLIHSK 122

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2171706 AT5G23550 "AT5G23550" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query:    27 CSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQ 86
             C+L+  QR Y FA CL AGL C  LS++VF  P+KF I FT GNL+A+GSTAF+IGP +Q
Sbjct:    42 CALTTKQRFYGFAICLSAGLTCTLLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQ 101

Query:    87 INMMFDSARIYATTVYLVCVVIALICALLVSLK 119
             + MM D ARIYAT +YL  ++IAL CAL V  K
Sbjct:   102 VTMMLDPARIYATALYLASIIIALFCALYVRNK 134

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0291055 DDB_G0291055 "SFT2 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 36/89 (40%), Positives = 57/89 (64%)

Query:    27 CSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQ 86
             CSL++TQR+  FA C   GL+  FLS++ F+ P  FA+LFT G++L V +T F++GP +Q
Sbjct:    27 CSLTFTQRVIGFAVCAALGLLFAFLSLMFFISPTTFALLFTLGDILMVMATGFIVGPIKQ 86

Query:    87 INMMFDSARIYATTVYLVCVVIALICALL 115
             I  M +  RI    V++  +++ L+   L
Sbjct:    87 IKNMAEPHRIICAIVFVASMILTLVAVFL 115

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1PKN6 SFT2D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 37/96 (38%), Positives = 58/96 (60%)

Query:    28 SLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK----FAILFTFGNLLAVGSTAFVIGP 83
             SLS++ R+  F AC  AG+VC  L  ++   P K    FA+ +TFGN+ ++GST F++GP
Sbjct:     7 SLSWSTRIKGFIACFAAGIVCSLLGTLLLWVPRKGLYLFAVFYTFGNIASIGSTVFLMGP 66

Query:    84 AQQINMMFDSARIYATTVYLVCVVIALICALLVSLK 119
              +Q+  MF+  R+ AT + L+C  + L  A    +K
Sbjct:    67 MKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHIK 102

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95562 SFT2D2 "Vesicle transport protein SFT2B" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/117 (33%), Positives = 64/117 (54%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS++ R+  F AC   G++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICA 113
             K    FA+ +TFGN+ ++GST F++GP +Q+  MF+  R+ AT + L+C  + L  A
Sbjct:    60 KGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSA 116

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RPV2 SFT2D2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 41/119 (34%), Positives = 63/119 (52%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS   R+  F AC  AG++C  L   +   P 
Sbjct:     1 MDKLKKVLSGQDAEDRGGLSEVAEAT-SLSSGTRIKGFIACFAAGILCSLLGTFLLWVPQ 59

Query:    61 K----FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALL 115
             K    FA+ +TFGN+ ++GST F++GP +Q+  MF+  R+ AT + L+C  + L  A L
Sbjct:    60 KGLYLFAVFYTFGNIASIGSTVFLMGPMKQLKRMFEPTRLIATILVLLCFALTLCFAFL 118

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917362 Sft2d2 "SFT2 domain containing 2" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 39/119 (32%), Positives = 64/119 (53%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS+  R+  F AC   G++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALL 115
             K    FA+ +T GN++++GST F++GP +Q+  MF+  R+ AT + L+C  + L  A L
Sbjct:    60 KGLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLCSAFL 118

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F6RF48 SFT2D2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/117 (34%), Positives = 62/117 (52%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPI 60
             M KLK++++G                 SLS   R+  F AC  AG++C  L  ++   P 
Sbjct:     1 MDKLKKVLSGQDSEDRGGLSEVVEAT-SLSSGTRIKGFIACFAAGILCSLLGTLLLWVPR 59

Query:    61 K----FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICA 113
             K    FA+ +TFGN+ ++GST F++GP  Q+  MF+  R+ AT + L+C  + L  A
Sbjct:    60 KGLYLFAVFYTFGNIASLGSTVFLMGPMTQLKRMFEPTRLIATVLVLLCFALTLCSA 116

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SBY3 SFT2D1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/117 (33%), Positives = 66/117 (56%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP- 59
             M KL+++++G                 +LS+  R+  F  C ++G+   FL   +   P 
Sbjct:     1 MEKLRRVLSGQDDEEQGLTAQVLDA-STLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG 59

Query:    60 -IK-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
              IK FA+ +TFGN+ A+ ST F++GP +Q+  MF++ R+ AT V ++C+V+ L  AL
Sbjct:    60 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAAL 116

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3SYY5 SFT2D1 "SFT2 domain containing 1" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 39/117 (33%), Positives = 65/117 (55%)

Query:     1 MWKLKQLVAGXXXXXXXXXXXXXXGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP- 59
             M KL+++++G                 +LS+  R+  FA C ++G+    L   +   P 
Sbjct:     1 MEKLRRVLSGQDDEEQGLTAQVLDA-STLSFNTRLKWFAICFVSGIFFSILGTGLLWLPG 59

Query:    60 -IK-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114
              IK FA+ +TFGN+ A+ ST F++GP +Q+  MF++ R+ AT + L+C V+ L  AL
Sbjct:    60 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATVIMLLCFVLTLCAAL 116

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
pfam04178	116	pfam04178, Got1, Got1/Sft2-like family	2e-15
COG5102	201	COG5102, SFT2, Membrane protein involved in ER to	9e-10

>gnl|CDD|217941 pfam04178, Got1, Got1/Sft2-like family

 Score = 66.0 bits (162), Expect = 2e-15
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 43  LAGLVCMFLSIIVFVRPI----KFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYA 98
             G++   L       P+     FA+L T GN+L +GST F+IGP +Q+  MF   R+ A
Sbjct: 1   KIGVLFFGLGFFFLFLPVLLLFPFALLLTLGNILFLGSTGFLIGPKKQLKFMFSKERLPA 60

Query: 99  TTVYLVCVVIALICALLV 116
           T V+ V +V+ L  AL++
Sbjct: 61  TIVFFVSLVLTLYFALIL 78

Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments. Length = 116

>gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]

 Score = 53.4 bits (128), Expect = 9e-10
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 28  SLSYTQRMYAFAACLLAGLVCM----FLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGP 83
            LS  +R   F+ACLL    C     F+  ++ ++P KF +L+T G+LL V    F++G 
Sbjct: 61  GLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGF 120

Query: 84  AQQINMMFDSARIYATTVYLVCVVIALICAL 114
              +  +    R+  ++ +    ++ +   L
Sbjct: 121 RAYLEGLTSKERLPHSSWFFGTTLLTIYVVL 151

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG2887	175	consensus Membrane protein involved in ER to Golgi	100.0
PF04178	118	Got1: Got1/Sft2-like family ; InterPro: IPR007305	99.9
COG5102	201	SFT2 Membrane protein involved in ER to Golgi tran	99.84
KOG1743	137	consensus Ferric reductase-like proteins [Inorgani	97.7
COG5120	129	GOT1 Membrane protein involved in Golgi transport	96.87
PF11026	130	DUF2721: Protein of unknown function (DUF2721); In	86.04

>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=223.92  Aligned_cols=119  Identities=43%  Similarity=0.717  Sum_probs=102.2

Q ss_pred             Ccccc-------ccccCCchh---hhhhc-cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHH
Q 033383            1 MWKLK-------QLVAGDEER---EESFL-EDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RPIKFAIL   65 (120)
Q Consensus         1 ~~~~~-------~~~g~~~~~---~~~~~-~~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l~----~p~kFa~l   65 (120)
                      |||++       .++|+|..|   |+.+. .+.+++.++|||+||+++|++|++.|++|+.++.+++.    .|+|||++
T Consensus         1 md~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~~kFal~   80 (175)
T KOG2887|consen    1 MDKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSPRKFALL   80 (175)
T ss_pred             CchhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeehh
Confidence            67876       445655333   22222 33345579999999999999999999999999998764    57799999


Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHhhccC
Q 033383           66 FTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSLK  119 (120)
Q Consensus        66 ~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~al~~ks~  119 (120)
                      ||+||+++++|++||+||++|+|||++|+|+++|+.|++++++|||+|+++||+
T Consensus        81 ~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~  134 (175)
T KOG2887|consen   81 YTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSK  134 (175)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999985

>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae

Probab=99.90  E-value=2.6e-23  Score=148.37  Aligned_cols=80  Identities=36%  Similarity=0.754  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHhhcc
Q 033383           39 AACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLVSL  118 (120)
Q Consensus        39 ~~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~~al~~ks  118 (120)
                      ++|+.+|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|+|++|+|+++|++|++|+++|+|+++++|+
T Consensus         4 ~~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~   82 (118)
T PF04178_consen    4 IICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKS   82 (118)
T ss_pred             hHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            45777777777777655 89999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 033383          119 K  119 (120)
Q Consensus       119 ~  119 (120)
                      .
T Consensus        83 ~   83 (118)
T PF04178_consen   83 Y   83 (118)
T ss_pred             H
Confidence            4

Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport

>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]

Probab=99.84  E-value=6.4e-21  Score=144.37  Aligned_cols=96  Identities=23%  Similarity=0.370  Sum_probs=86.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHH
Q 033383           24 DGICSLSYTQRMYAFAACLLAGLVCMFLSII----VFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYAT   99 (120)
Q Consensus        24 ~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~----~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t   99 (120)
                      .+.++||++||...|.+|+..+..|+.++..    +.++|+||.++||+||++++.+++++.||.+|+|+++++||+|.+
T Consensus        57 ~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s  136 (201)
T COG5102          57 SSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHS  136 (201)
T ss_pred             cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchh
Confidence            4478999999999999997777777755544    347899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccC
Q 033383          100 TVYLVCVVIALICALLVSLK  119 (120)
Q Consensus       100 ~~y~~sl~lTL~~al~~ks~  119 (120)
                      ..|+++..+|+|+++..|++
T Consensus       137 ~~ff~t~l~Tiy~~~k~k~t  156 (201)
T COG5102         137 SWFFGTTLLTIYVVLKYKRT  156 (201)
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999988875

>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]

Probab=97.70  E-value=2.7e-05  Score=57.03  Aligned_cols=75  Identities=21%  Similarity=0.359  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHH
Q 033383           33 QRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI  111 (120)
Q Consensus        33 qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~  111 (120)
                      ++-+..++..+.|.++++++.+++++-    .+-++||++++.+..+..|.++.+...++++|.-.|+.|.+...++++
T Consensus         5 d~kkiGvg~TgfG~ff~l~Gii~ffD~----aLLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~   79 (137)
T KOG1743|consen    5 DLKKIGVGLTGFGVFFFLFGIILFFDK----ALLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLF   79 (137)
T ss_pred             hhhHhCeEEechhHHHHHHHHHHHHhh----HHHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHH
Confidence            444456777889999999999988877    678889999999999999999999999999999999999999988876

>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]

Probab=96.87  E-value=0.0016  Score=46.94  Aligned_cols=69  Identities=17%  Similarity=0.413  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHhhccCcchHHHHHHHHHHHHHHH
Q 033383           39 AACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI  111 (120)
Q Consensus        39 ~~c~~~g~~~~~ls~~~l~~p~kFa~l~tlGsil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~sl~lTL~  111 (120)
                      ++...+|.+++.++.+++++.    .+-++||++.+.+...+.|.++-+-...+|+|+..++.|.....+++|
T Consensus        11 V~~t~~Gflffl~Gif~ffDr----aLl~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~   79 (129)
T COG5120          11 VVVTSIGFLFFLVGIFLFFDR----ALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLY   79 (129)
T ss_pred             eEEeehhHHHHHHHHHHHhhh----HHHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHH
Confidence            344567888888888877765    577889999999999999999888888999999999999999999987

>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria

Probab=86.04  E-value=1.4  Score=31.70  Aligned_cols=58  Identities=22%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             ccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHh
Q 033383           23 SDGICSLSYTQRMYAFAACLL-AGLVCMFLSIIVFV--------RPIKFAILFTFGNLLAVGSTAFV   80 (120)
Q Consensus        23 ~~~~~~LS~~qRi~gF~~c~~-~g~~~~~ls~~~l~--------~p~kFa~l~tlGsil~l~s~~fL   80 (120)
                      ..+...|.++-|++...+.+. ++.++..+..+.++        .+.--+++|..|-++.++|...+
T Consensus        49 ~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~~f  115 (130)
T PF11026_consen   49 RRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLVLF  115 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667777777766655333 44444444443222        23345566666666666665544

The function is not known.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00