Citrus Sinensis ID: 033388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSLQF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHcccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccccHHHHHccccEEEccEEEEccccccEEcccccccc
Coil and Loop (DISEMBL)
mgcagssqskadgtvkkirkpkpwkhpqpitksqLMQLRDEFwdtaphyggrKEIWDALRAAAEADLSLAQAIVDSAGvivqsadlticydergakyelpkyvlseptnlireglgslqf
Flexible Loop (DISEMBL)
mgcagssqskadgtvkkirkpkpwkhpqpitksqlmQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKyelpkyvlseptnlireglgslqf
Low Complexity Region (SEG)
MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDalraaaeadlslaqaIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSLQF
Disordered region (IsUnstruct)
***********************************MQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI*********
Disordered Region (DISOPRED)
***********************WKHPQPITK*QLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI*********
Disordered Region (DISEMBL)
***************KKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSLQF
Disordered Region (DISPRO)
************************KHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSLQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q4V8W7	227	Ubiquitin domain-containi	yes	no	0.933	0.493	0.521	2e-25
Q6DG43	240	Ubiquitin domain-containi	no	no	0.916	0.458	0.495	7e-25
Q6GL38	240	Ubiquitin domain-containi	yes	no	0.933	0.466	0.496	7e-25
Q6PGH0	234	Ubiquitin domain-containi	yes	no	0.916	0.470	0.495	2e-24
Q640W6	234	Ubiquitin domain-containi	N/A	no	0.916	0.470	0.495	2e-24
Q8WUN7	234	Ubiquitin domain-containi	yes	no	0.916	0.470	0.487	5e-24
Q5EAE3	234	Ubiquitin domain-containi	yes	no	0.916	0.470	0.487	6e-24
Q91WB7	227	Ubiquitin domain-containi	no	no	0.75	0.396	0.553	2e-18
Q3ZBQ1	227	Ubiquitin domain-containi	no	no	0.75	0.396	0.553	2e-18
Q68FV8	227	Ubiquitin domain-containi	no	no	0.75	0.396	0.553	2e-18

>sp|Q4V8W7|UBTD1_DANRE Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 74/117 (63%), Gaps = 5/117 (4%)

Query: 2   GCAGSSQSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           G    +Q K  G  + ++K KP WK   P+T+ QL   RDEFWDTAP + GRKEIWDAL+
Sbjct: 14  GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALK 73

Query: 61  AAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAA A    D  LAQAIVD A + +    LT CYDE G +Y+LP Y L+ P NLI E
Sbjct: 74  AAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISE 130

Danio rerio (taxid: 7955)

>sp|Q6DG43|UBTD2_DANRE Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 11/121 (9%)

Query: 4   AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
           +GS    +DGT       + +++ KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKREKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 57  DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
           DAL+AAA+A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y LS P N+I 
Sbjct: 72  DALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIE 131

Query: 113 E 113
           E
Sbjct: 132 E 132

Danio rerio (taxid: 7955)

>sp|Q6GL38|UBTD1_XENTR Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis GN=ubtd1 PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 19/131 (14%)

Query: 2   GCAGS-------SQSKADGTVKK-------IRKPKP-WKHPQPITKSQLMQLRDEFWDTA 46
           GC G        SQS+A G  +K       ++K +P WK   P+T  QL   RDEFWDTA
Sbjct: 3   GCVGRPQGESQRSQSRASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTA 62

Query: 47  PHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKY 102
           P + GRKEIWDAL+AAA A    D  LAQAIVD A + +    LT CYDE G +Y+LP Y
Sbjct: 63  PAFEGRKEIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVY 122

Query: 103 VLSEPTNLIRE 113
            L+ P NLI E
Sbjct: 123 CLAPPVNLIME 133

Xenopus tropicalis (taxid: 8364)

>sp|Q6PGH0|UBTD2_MOUSE Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 11/121 (9%)

Query: 4   AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
           +GS    +DGT       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 57  DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
           DAL+AAA A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I 
Sbjct: 72  DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

Query: 113 E 113
           E
Sbjct: 132 E 132

Mus musculus (taxid: 10090)

>sp|Q640W6|UBTD1_XENLA Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 11/121 (9%)

Query: 4   AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
           +GS    +DGT       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKKDKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 57  DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
           DAL+AAA A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I 
Sbjct: 72  DALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

Query: 113 E 113
           E
Sbjct: 132 E 132

Xenopus laevis (taxid: 8355)

>sp|Q8WUN7|UBTD2_HUMAN Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1 SV=2

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 11/121 (9%)

Query: 4   AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
           +GS    ++GT       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 57  DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
           DAL+AAA A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I 
Sbjct: 72  DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

Query: 113 E 113
           E
Sbjct: 132 E 132

Homo sapiens (taxid: 9606)

>sp|Q5EAE3|UBTD2_BOVIN Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 11/121 (9%)

Query: 4   AGSSQSKADGT------VKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
           +GS    ++GT       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 57  DALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
           DAL+AAA A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I 
Sbjct: 72  DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

Query: 113 E 113
           E
Sbjct: 132 E 132

Bos taurus (taxid: 9913)

>sp|Q91WB7|UBTD1_MOUSE Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 24  WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
           WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A +
Sbjct: 36  WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95

Query: 80  IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
            +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96  TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129

Mus musculus (taxid: 10090)

>sp|Q3ZBQ1|UBTD1_BOVIN Ubiquitin domain-containing protein 1 OS=Bos taurus GN=UBTD1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 24  WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
           WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A +
Sbjct: 36  WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95

Query: 80  IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
            +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96  TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129

Bos taurus (taxid: 9913)

>sp|Q68FV8|UBTD1_RAT Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 24  WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGV 79
           WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A +
Sbjct: 36  WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95

Query: 80  IVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
            +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct: 96  TLPHGTLCECYDELGNRYQLPIYCLSPPVNLLLE 129

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
357452077	114	Ubiquitin domain-containing protein [Med	0.941	0.991	0.938	6e-58
224117000	114	predicted protein [Populus trichocarpa]	0.941	0.991	0.938	1e-57
388512091	114	unknown [Lotus japonicus]	0.941	0.991	0.929	4e-57
351721822	114	uncharacterized protein LOC100306399 [Gl	0.941	0.991	0.929	9e-57
225461728	114	PREDICTED: ubiquitin domain-containing p	0.95	1.0	0.912	1e-56
388510626	114	unknown [Lotus japonicus]	0.941	0.991	0.920	2e-56
356544112	114	PREDICTED: ubiquitin domain-containing p	0.941	0.991	0.920	3e-56
449456569	111	PREDICTED: ubiquitin domain-containing p	0.925	1.0	0.891	4e-54
18404455	114	Ubiquitin domain-containing protein [Ara	0.95	1.0	0.868	4e-54
255562512	219	DNA binding protein, putative [Ricinus c	0.916	0.502	0.845	5e-51

>gi|357452077|ref|XP_003596315.1| Ubiquitin domain-containing protein [Medicago truncatula] gi|355485363|gb|AES66566.1| Ubiquitin domain-containing protein [Medicago truncatula] gi|388514353|gb|AFK45238.1| unknown [Medicago truncatula]

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/113 (93%), Positives = 113/113 (100%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQ+KADGTVKKIRKPKPWKHPQPITK+QL+QLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKADGTVKKIRKPKPWKHPQPITKTQLIQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAAEADLSLAQAIVDSAGVIVQS+DLT+CYDERGAKYELPKYVLSEPTN+I+E
Sbjct: 61  AAAEADLSLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNMIQE 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117000|ref|XP_002317449.1| predicted protein [Populus trichocarpa] gi|222860514|gb|EEE98061.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/113 (93%), Positives = 112/113 (99%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQ+K+DG VKKIRKPKPWKHPQPITKSQLMQ+RDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKSDGNVKKIRKPKPWKHPQPITKSQLMQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAA+A+LSLAQAIVDSAGVIVQ+ADLTICYDERGAKYELPKYVLSEPTNLIRE
Sbjct: 61  AAADAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIRE 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512091|gb|AFK44107.1| unknown [Lotus japonicus]

 Score =  224 bits (571), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/113 (92%), Positives = 112/113 (99%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQSKADGT KKIRKPKPWKHPQPIT++QL+QLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAAEADL+LAQAIVDSAGVIVQS+DLT+CYDERGAKYELPKYVLSEPTNLIR+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721822|ref|NP_001238246.1| uncharacterized protein LOC100306399 [Glycine max] gi|255628415|gb|ACU14552.1| unknown [Glycine max]

 Score =  223 bits (569), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 105/113 (92%), Positives = 110/113 (97%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQSK DG VKKIRKPKPWKHPQPITK+QL QLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQSKPDGAVKKIRKPKPWKHPQPITKTQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAAEADL+LAQAIVDSAGVIVQS+DLT+CYDERGAKYELPKYVLSEPTNLIR+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461728|ref|XP_002285516.1| PREDICTED: ubiquitin domain-containing protein 1 [Vitis vinifera] gi|147767244|emb|CAN66729.1| hypothetical protein VITISV_025684 [Vitis vinifera] gi|302142875|emb|CBI20170.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/114 (91%), Positives = 112/114 (98%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQ+K DGTVKKIRKPKPWK+PQP+TK+QLMQ+RDEFWDTAPHYGG+KEIWDALR
Sbjct: 1   MGCAGSSQTKGDGTVKKIRKPKPWKNPQPLTKTQLMQMRDEFWDTAPHYGGQKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREG 114
           AAAEADL+LAQAIVDSAGVIVQSADLTICYDERGAKYELP YVLSEPTNLIR+G
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPHYVLSEPTNLIRDG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510626|gb|AFK43379.1| unknown [Lotus japonicus]

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 112/113 (99%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQSKADGT KKIRKPKPWKHPQPIT++QL+QLRDEFWDTAPH+GGRKEIWDALR
Sbjct: 1   MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHHGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAAEADL+LAQAIVDSAGVIVQS+DLT+CYDERGAKYELPKYVLSEPTNLIR+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544112|ref|XP_003540499.1| PREDICTED: ubiquitin domain-containing protein 1-like [Glycine max]

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 109/113 (96%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQSK DG VKKIRKPKPWKHPQPITK+QL QLRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQSKPDGAVKKIRKPKPWKHPQPITKTQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
           AAAEADL+LAQ IVDSAGVIVQS+DLT+CYDERGAKYELPKYVLSEPTNLIR+
Sbjct: 61  AAAEADLTLAQVIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456569|ref|XP_004146021.1| PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus] gi|449518063|ref|XP_004166063.1| PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus]

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 109/111 (98%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQ+K DG+VKKIRKPKPWK+PQPITK+ L+++RDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111
           AAAEADL+LAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404455|ref|NP_564630.1| Ubiquitin domain-containing protein [Arabidopsis thaliana] gi|297847740|ref|XP_002891751.1| hypothetical protein ARALYDRAFT_474470 [Arabidopsis lyrata subsp. lyrata] gi|7769863|gb|AAF69541.1|AC008007_16 F12M16.29 [Arabidopsis thaliana] gi|13877803|gb|AAK43979.1|AF370164_1 unknown protein [Arabidopsis thaliana] gi|16323476|gb|AAL15232.1| unknown protein [Arabidopsis thaliana] gi|297337593|gb|EFH68010.1| hypothetical protein ARALYDRAFT_474470 [Arabidopsis lyrata subsp. lyrata] gi|332194816|gb|AEE32937.1| Ubiquitin domain-containing protein [Arabidopsis thaliana]

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 109/114 (95%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+QS+ADG+VKKIRKPKPWKH QPITK++LM+LR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREG 114
           AAAEAD+SLAQAIVDSAGVIVQ+ DLT+CYDERGAKYELPKYVLSEPTNL  E 
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNLEEEN 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562512|ref|XP_002522262.1| DNA binding protein, putative [Ricinus communis] gi|223538515|gb|EEF40120.1| DNA binding protein, putative [Ricinus communis]

 Score =  204 bits (519), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 103/110 (93%)

Query: 1   MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALR 60
           MGC+GSS++K D   KKIRKPKPWKH +PIT++QL+Q+RDEFWDTAPHYGGRKEIWDAL 
Sbjct: 1   MGCSGSSRAKGDDHSKKIRKPKPWKHSEPITRTQLLQMRDEFWDTAPHYGGRKEIWDALH 60

Query: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNL 110
           AAAEADL+LAQAIVDSAGVIVQS D+TICYDERGAKYELPKYVLSEPTNL
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSEDMTICYDERGAKYELPKYVLSEPTNL 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2009685	114	AT1G53400 [Arabidopsis thalian	0.941	0.991	0.752	1.5e-44
TAIR|locus:2171933	118	AT5G45740 "AT5G45740" [Arabido	0.941	0.957	0.617	6.3e-37
TAIR|locus:2015566	114	AT1G16960 "AT1G16960" [Arabido	0.916	0.964	0.607	8.3e-35
ZFIN|ZDB-GENE-050913-62	227	ubtd1b "ubiquitin domain conta	0.933	0.493	0.427	4.4e-20
ZFIN|ZDB-GENE-070424-93	230	ubtd1a "ubiquitin domain conta	0.916	0.478	0.426	9.2e-20
UNIPROTKB|E1C4N1	234	UBTD2 "Uncharacterized protein	0.958	0.491	0.401	8.3e-19
ZFIN|ZDB-GENE-040718-473	244	ubtd2 "ubiquitin domain contai	0.916	0.450	0.404	8.3e-19
MGI|MGI:2444752	234	Ubtd2 "ubiquitin domain contai	0.916	0.470	0.404	1.1e-18
UNIPROTKB|Q5EAE3	234	UBTD2 "Ubiquitin domain-contai	0.841	0.431	0.424	2.2e-18
UNIPROTKB|E2QTA0	234	UBTD2 "Uncharacterized protein	0.841	0.431	0.424	2.2e-18

TAIR|locus:2009685 AT1G53400 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 85/113 (75%), Positives = 94/113 (83%)

Query:     1 MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXX 60
             MGCAGS+QS+ADG+VKKIRKPKPWKH QPITK++LM+LR+EFWDTAPHYGGRKEIWD   
Sbjct:     1 MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query:    61 XXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                         IVDSAGVIVQ+ DLT+CYDERGAKYELPKYVLSEPTNL  E
Sbjct:    61 AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNLEEE 113

GO:0005737 "cytoplasm" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2171933 AT5G45740 "AT5G45740" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 71/115 (61%), Positives = 88/115 (76%)

Query:     1 MGCAGSSQSKADGTVK--KIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDX 58
             MGC GSSQ++ +G  K  KI KPKPW H +PIT++QL  +R+EFWDT+PHYGG++EIW+ 
Sbjct:     1 MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query:    59 XXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                           IVDSAGVIVQ+ DLT+C+DERGA+YELP+YVLSEPTNLIRE
Sbjct:    61 LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 115

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015566 AT1G16960 "AT1G16960" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 68/112 (60%), Positives = 87/112 (77%)

Query:     1 MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXX 60
             MGC+ SS++ A+G  +KIR+PK WKHPQPI++ +L Q+R+EFWDTAPHYGG+KEIWD   
Sbjct:     1 MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 59

Query:    61 XXXXXXXXXXX-XIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111
                          I++SAGVIVQ+ DLTICYDE+G+KYELPKYVL +P+NLI
Sbjct:    60 AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

ZFIN|ZDB-GENE-050913-62 ubtd1b "ubiquitin domain containing 1b" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 50/117 (42%), Positives = 62/117 (52%)

Query:     2 GCAGSSQSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXX 60
             G    +Q K  G  + ++K KP WK   P+T+ QL   RDEFWDTAP + GRKEIWD   
Sbjct:    14 GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALK 73

Query:    61 XXXXXXXXX----XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                             IVD A + +    LT CYDE G +Y+LP Y L+ P NLI E
Sbjct:    74 AAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISE 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-070424-93 ubtd1a "ubiquitin domain containing 1a" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 49/115 (42%), Positives = 62/115 (53%)

Query:     4 AGSSQSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXXXX 62
             A S+ +K  G  + ++K KP WK   P+T+ QL   RDEFWDTAP + GRKEIWD     
Sbjct:    19 APSNGNKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFDGRKEIWDALKAA 78

Query:    63 XXXXX----XXXXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                           IVD A + +    L  CYDE G +Y+LP Y LS P NL+ E
Sbjct:    79 AVAIECNDHQLAQAIVDGASITLPHGSLMECYDELGNRYQLPAYCLSPPVNLVSE 133

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1C4N1 UBTD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 51/127 (40%), Positives = 66/127 (51%)

Query:     4 AGSSQSKADGTV------KKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
             +GS    +DGT       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct:    12 SGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query:    57 DXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
             D                   I+D A + +    LT CYDE G +Y+LP Y L+ P N+I 
Sbjct:    72 DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

Query:   113 EGLGSLQ 119
             E  G L+
Sbjct:   132 EK-GDLE 137

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040718-473 ubtd2 "ubiquitin domain containing 2" [Danio rerio (taxid:7955)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 49/121 (40%), Positives = 63/121 (52%)

Query:     4 AGSSQSKADGTV------KKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
             +GS    +DGT       + +++ KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct:    16 SGSLNENSDGTGVALGRNQPLKREKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 75

Query:    57 DXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
             D                   I+D A + +    LT CYDE G +Y+LP Y LS P N+I 
Sbjct:    76 DALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIE 135

Query:   113 E 113
             E
Sbjct:   136 E 136

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2444752 Ubtd2 "ubiquitin domain containing 2" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 49/121 (40%), Positives = 63/121 (52%)

Query:     4 AGSSQSKADGTV------KKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIW 56
             +GS    +DGT       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct:    12 SGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query:    57 DXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIR 112
             D                   I+D A + +    LT CYDE G +Y+LP Y L+ P N+I 
Sbjct:    72 DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

Query:   113 E 113
             E
Sbjct:   132 E 132

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5EAE3 UBTD2 "Ubiquitin domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 45/106 (42%), Positives = 57/106 (53%)

Query:    13 GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXXXXXXXXXXX-- 69
             G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD              
Sbjct:    27 GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDH 86

Query:    70 --XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                  I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct:    87 ELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2QTA0 UBTD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 45/106 (42%), Positives = 57/106 (53%)

Query:    13 GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXXXXXXXXXXX-- 69
             G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD              
Sbjct:    27 GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDH 86

Query:    70 --XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                  I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct:    87 ELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG0013	231	consensus Uncharacterized conserved protein [Funct	100.0
KOG0013	231	consensus Uncharacterized conserved protein [Funct	99.89

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-40  Score=263.52  Aligned_cols=117  Identities=47%  Similarity=0.786  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCC--------CCCCCccCCCCCCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHh----cHHH
Q 033388            2 GCAGSSQSKAD--------GTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSL   69 (120)
Q Consensus         2 gc~~s~~~~~~--------~~~~~lrrp~~W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~----Dl~t   69 (120)
                      +|.+-.++...        .|++.+|-|+.|+|+.|+|++||+.+|+|||||+|+|+||+|||||||+|+-+    |.++
T Consensus         3 ~~~s~~r~a~~~~~~g~a~~~~~l~~~~~~~~~d~~lT~gqlrskRdEFWdTapAf~GrKEIWDaL~aa~ta~e~~d~e~   82 (231)
T KOG0013|consen    3 QCLSGNRPAGVGNNGGEAPSNSPLLREPKLWTSDPPLTKGQLRSKRDEFWDTAPAFGGRKEIWDALHAAVTAAEEGDAEA   82 (231)
T ss_pred             ccccCCCCccCCCccccCCCCCchhcccccccCCCCcchhhhhhhhhhhhhcccccCCcHHHHHHHHHHHHHHhcccHHH
Confidence            46555544433        34678888999999999999999999999999999999999999999998753    9999


Q ss_pred             HHHHHHHcCceeecCCcceeecCCCCccccCceecccCcccccCCCCCC
Q 033388           70 AQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREGLGSL  118 (120)
Q Consensus        70 AQ~IldaAgitlp~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~~~~~  118 (120)
                      ||+|||+|+||||+|+|+.||||+|+.|.+|.||++-|.|++.+..+++
T Consensus        83 Aqai~dgA~~tiP~g~l~ecydelg~~y~~p~ycls~p~n~~~E~~d~~  131 (231)
T KOG0013|consen   83 AQAILDGADLTIPEGDLSECYDELGGTYYEPIYCLSRPPNAFAERKDSE  131 (231)
T ss_pred             HHHHHhccccccCCcchHHHHHhhCCeEeecceeeccCchHHHhhcccc
Confidence            9999999999999999999999999999999999999999997765543

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=5.7e-24  Score=171.16  Aligned_cols=113  Identities=40%  Similarity=0.585  Sum_probs=109.5

Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHhcHHHHHHHHHHcCce
Q 033388            1 MGCAGSSQSKADGTVKKIRKPKPWKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVDSAGVI   80 (120)
Q Consensus         1 mgc~~s~~~~~~~~~~~lrrp~~W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~Dl~tAQ~IldaAgit   80 (120)
                      |||.++...+.|+.+..+.+|++|.+++++++.+|-..|++||+|.+||+|..|||.+||||.+.| ..+|.|+.+++++
T Consensus       118 s~p~n~~~E~~d~~s~ei~~ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D-~~sQrif~Sg~~l  196 (231)
T KOG0013|consen  118 SRPPNAFAERKDSESLEIPEPPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVD-PLSQRIFFSGGVL  196 (231)
T ss_pred             ccCchHHHhhccccccccCCCCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccc-hhhheeeccCCce
Confidence            899999999999999999999999999999999999999999999999999999999999999889 9999999999999


Q ss_pred             eecCCcceeecCCCCccccCceecccCcccccCC
Q 033388           81 VQSADLTICYDERGAKYELPKYVLSEPTNLIREG  114 (120)
Q Consensus        81 lp~gdL~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~  114 (120)
                      +.+-+|+.||||.|.+|.||.+|+++|.|+....
T Consensus       197 ~dkt~LeEc~iekg~rYvlqviVlq~~~Nl~~q~  230 (231)
T KOG0013|consen  197 VDKTDLEECKIEKGQRYVLQVIVLQEPKNLSPQE  230 (231)
T ss_pred             eccccceeeeecCCCEEEEEEEeccCCCCCCCCC
Confidence            9999999999999999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
2ksn_A	137	Solution Structure Of The N-Terminal Domain Of Dc-U		3e-18

>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2 Length = 137

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 13  GTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDXXXXXXXXXXXX-- 69
           G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWD              
Sbjct: 15  GRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDH 74
Query: 70  --XXXIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
                I+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct: 75  ELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
2ksn_A	137	Ubiquitin domain-containing protein 2; UBTD2, DC-U	1e-47

>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens} Length = 137

 Score =  148 bits (374), Expect = 1e-47
 Identities = 57/114 (50%), Positives = 70/114 (61%), Gaps = 5/114 (4%)

Query: 5   GSSQSKADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAA 63
                 A G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+AAA
Sbjct: 7   SEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAA 66

Query: 64  EA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE 113
            A    D  LAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N+I E
Sbjct: 67  HAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2ksn_A	137	Ubiquitin domain-containing protein 2; UBTD2, DC-U	100.0

>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=2e-54  Score=324.76  Aligned_cols=107  Identities=53%  Similarity=0.900  Sum_probs=101.7

Q ss_pred             CCCCCCCccCCCC-CCCCCCCCHHHHHHHHhhhhccccCCCccHHHHHHHHHHHHh----cHHHHHHHHHHcCceeecCC
Q 033388           11 ADGTVKKIRKPKP-WKHPQPITKSQLMQLRDEFWDTAPHYGGRKEIWDALRAAAEA----DLSLAQAIVDSAGVIVQSAD   85 (120)
Q Consensus        11 ~~~~~~~lrrp~~-W~s~~~~T~~qL~~~R~EFWdTr~~y~Gr~EIW~aLraA~e~----Dl~tAQ~IldaAgitlp~gd   85 (120)
                      .++..+|||++++ |+|+.+||++||++||+|||||||||+||+|||+|||+|+++    |++|||+|||+||||||+||
T Consensus        13 ~~~~n~pl~~~~~~W~s~~~~Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~Dl~tAQ~IldaAgItvp~gd   92 (137)
T 2ksn_A           13 ALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGA   92 (137)
T ss_dssp             SSCSSCCCCCCCCCSSCSSCCSHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCC
T ss_pred             ccCCCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcccCCc
Confidence            6677899999888 999999999999999999999999999999999999999963    99999999999999999999


Q ss_pred             cceeecCCCCccccCceecccCcccccCCCCC
Q 033388           86 LTICYDERGAKYELPKYVLSEPTNLIREGLGS  117 (120)
Q Consensus        86 L~~~YDe~G~~Y~lP~~v~s~P~Nl~~~~~~~  117 (120)
                      |+.||||+|++|+||+||+|+|+||+++.+++
T Consensus        93 L~~cYDe~G~~Y~LP~yvls~P~Nl~~~~~~~  124 (137)
T 2ksn_A           93 LTECYDELGNRYQLPVYCLAPPINMIEEKSDI  124 (137)
T ss_dssp             SSEEEETTTEEEECCGGGTCCSTTTCCCTTTC
T ss_pred             HHHHHhccCCccCCCeeEeeCCcccccccccc
Confidence            99999999999999999999999999887654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00