Citrus Sinensis ID: 033432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHcHHHHccHHHHHHHHHHHHHHHHccEEEc
Coil and Loop (DISEMBL)
mathsdsvagkksndvsndlQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Flexible Loop (DISEMBL)
mathsdsvagkksndvsnDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Low Complexity Region (SEG)
MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Disordered region (IsUnstruct)
*******************LQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHI*
Disordered Region (DISOPRED)
************************AENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Disordered Region (DISEMBL)
*************NDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Disordered Region (DISPRO)
*****************NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q1ZXH4	123	ER membrane protein compl	yes	no	0.815	0.788	0.391	4e-15
Q3ZCG8	110	ER membrane protein compl	yes	no	0.773	0.836	0.434	1e-13
Q9CQW0	110	ER membrane protein compl	yes	no	0.773	0.836	0.434	4e-13
Q9BV81	110	ER membrane protein compl	yes	no	0.773	0.836	0.434	4e-13
Q6P0F0	110	ER membrane protein compl	yes	no	0.907	0.981	0.407	7e-13
Q6GLC5	110	ER membrane protein compl	yes	no	0.831	0.9	0.404	2e-12
Q68EU8	110	ER membrane protein compl	N/A	no	0.831	0.9	0.404	2e-12
O59764	108	ER membrane protein compl	yes	no	0.789	0.870	0.315	0.0002

>sp|Q1ZXH4|EMC6_DICDI ER membrane protein complex subunit 6 OS=Dictyostelium discoideum GN=emc6 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 23  FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFS 82
           +  E +Q N K + + +  +SI+GG IAG++GF+G+ GF+FYF I          K   +
Sbjct: 27  YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKN 86

Query: 83  VHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           +H YF +   I  D    GLM ++LFWTF Y+I+HI+
Sbjct: 87  LHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNIIHIY 123

Dictyostelium discoideum (taxid: 44689)

>sp|Q3ZCG8|EMC6_BOVIN ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query: 28  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78

Query: 88  DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
            S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Bos taurus (taxid: 9913)

>sp|Q9CQW0|EMC6_MOUSE ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 28  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query: 88  DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
            S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Mus musculus (taxid: 10090)

>sp|Q9BV81|EMC6_HUMAN ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query: 28  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query: 88  DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
            S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Homo sapiens (taxid: 9606)

>sp|Q6P0F0|EMC6_DANRE ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 5/113 (4%)

Query: 7   SVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL 66
           SVA K+        Q  +  +++ N  V+ Y RT +S + G  AGILG TGL GFVFYFL
Sbjct: 3   SVAAKREGP-----QFISEVSVRGNGAVLDYCRTSVSALSGATAGILGLTGLYGFVFYFL 57

Query: 67  IMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              + S+ L+ KA    +  F S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 58  ASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLFTYVLFWTFLYGMVHVY 110

Danio rerio (taxid: 7955)

>sp|Q6GLC5|EMC6_XENTR ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 21  QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
           Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct: 12  QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSG 71

Query: 81  FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 72  RKWNKYFKSRKPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

Xenopus tropicalis (taxid: 8364)

>sp|Q68EU8|EMC6_XENLA ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query: 21  QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
           Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct: 12  QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSG 71

Query: 81  FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct: 72  RKWNKYFKSRKPLFTGGLVGGLFTYVLFWTFLYGMVHVY 110

Xenopus laevis (taxid: 8355)

>sp|O59764|YJMB_SCHPO ER membrane protein complex subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1020.11c PE=3 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 26  ENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA-KAKFSVH 84
           EN+  N +V+ + R   S   G  AGILG T   G   Y L     S  L A K + ++ 
Sbjct: 13  ENVAYNEQVVSFVRNLTSSFFGCAAGILGLTSYEGLALYVLGYFFVSFLLFALKMRGNLT 72

Query: 85  SYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
            Y+    +  +   L G  S+VL WT  Y +V+++
Sbjct: 73  KYYQPGYKFWIAKILDGAPSYVLTWTLFYSLVYVY 107

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
296083215	474	unnamed protein product [Vitis vinifera]	1.0	0.251	0.833	2e-51
225432031	120	PREDICTED: transmembrane protein 93-like	1.0	0.991	0.833	5e-50
224112014	117	predicted protein [Populus trichocarpa]	0.983	1.0	0.831	2e-49
224099101	117	predicted protein [Populus trichocarpa]	0.983	1.0	0.815	5e-49
351734464	120	uncharacterized protein LOC100306269 [Gl	1.0	0.991	0.791	2e-47
449435645	119	PREDICTED: ER membrane protein complex s	1.0	1.0	0.756	1e-45
351728001	120	uncharacterized protein LOC100306572 [Gl	0.915	0.908	0.798	1e-43
351727182	120	uncharacterized protein LOC100526986 [Gl	0.857	0.85	0.833	5e-43
357448843	120	Transmembrane protein [Medicago truncatu	0.857	0.85	0.823	1e-42
357454297	120	Transmembrane protein [Medicago truncatu	0.857	0.85	0.823	2e-42

>gi|296083215|emb|CBI22851.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/120 (83%), Positives = 108/120 (90%), Gaps = 1/120 (0%)

Query: 1   MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 59
           MA  +DS A  KKSN+ +ND+  FNAENLQSNMK+IYYSRTFLSIIGGVIAGILGFTG  
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 60  GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           GF+FYFL+MAITSV LMAKAKFSVHSYFDSWNRI+LDGFLGGLMSFVLFWT AYDIVHIF
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWTLAYDIVHIF 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432031|ref|XP_002280085.1| PREDICTED: transmembrane protein 93-like [Vitis vinifera]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 108/120 (90%), Gaps = 1/120 (0%)

Query: 1   MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 59
           MA  +DS A  KKSN+ +ND+  FNAENLQSNMK+IYYSRTFLSIIGGVIAGILGFTG  
Sbjct: 1   MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 60

Query: 60  GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           GF+FYFL+MAITSV LMAKAKFSVHSYFDSWNRI+LDGFLGGLMSFVLFWT AYDIVHIF
Sbjct: 61  GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWTLAYDIVHIF 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112014|ref|XP_002316053.1| predicted protein [Populus trichocarpa] gi|222865093|gb|EEF02224.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 107/119 (89%), Gaps = 2/119 (1%)

Query: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60
           MA H++S   KKS+D  NDLQ F AENLQSNMKVIYYSRTFLSIIGGVIAGILG TGL G
Sbjct: 1   MAGHNES--EKKSSDAVNDLQTFRAENLQSNMKVIYYSRTFLSIIGGVIAGILGLTGLTG 58

Query: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           FVFYFL+M ITSV L+AKAKFS+H+YFDSWNR+LLDGFLGGLMSFVLFWTFAYDIVHIF
Sbjct: 59  FVFYFLMMTITSVALIAKAKFSIHTYFDSWNRVLLDGFLGGLMSFVLFWTFAYDIVHIF 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099101|ref|XP_002311375.1| predicted protein [Populus trichocarpa] gi|222851195|gb|EEE88742.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 108/119 (90%), Gaps = 2/119 (1%)

Query: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60
           MA H++S   KKS+D  +DLQ F AENLQSNMKVIYYSRTFLSIIGGV+AGILGFTGL G
Sbjct: 1   MAGHNES--EKKSSDALDDLQTFRAENLQSNMKVIYYSRTFLSIIGGVVAGILGFTGLTG 58

Query: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           FVFYFL+MAITSV L+AKAKFS+H+YFDSWNR++ DGFLGGLMSFVLFWTFAYDIVHIF
Sbjct: 59  FVFYFLVMAITSVALIAKAKFSIHTYFDSWNRVVFDGFLGGLMSFVLFWTFAYDIVHIF 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734464|ref|NP_001236282.1| uncharacterized protein LOC100306269 [Glycine max] gi|255628061|gb|ACU14375.1| unknown [Glycine max]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 107/120 (89%), Gaps = 1/120 (0%)

Query: 1   MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 59
           MA HSDS +  KKS++  N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL 
Sbjct: 1   MAVHSDSASSEKKSSNGVNELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLK 60

Query: 60  GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           GFVFY L+MA TS+ L+AKAKFS H+YFDSWNR+LLDGFLGGLMSFVLFWTFAYDIVHIF
Sbjct: 61  GFVFYLLLMAFTSLGLVAKAKFSTHTYFDSWNRVLLDGFLGGLMSFVLFWTFAYDIVHIF 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435645|ref|XP_004135605.1| PREDICTED: ER membrane protein complex subunit 6-like [Cucumis sativus]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 106/119 (89%)

Query: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60
           MA +S + + KKS+D+++D+ IFNAENLQ+N+K+IYYSRTFLSIIGGVIAG+LGFTGL G
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           F+FYFL+MAITSV L AKA FS HSYF+S N+IL DGFL GLMSFVLFWTFAYDIVHIF
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTFAYDIVHIF 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728001|ref|NP_001236924.1| uncharacterized protein LOC100306572 [Glycine max] gi|255628917|gb|ACU14803.1| unknown [Glycine max]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 98/109 (89%)

Query: 11  KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 70
           KK  D  NDL  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFT L GFVFYFL+M +
Sbjct: 12  KKPGDGVNDLLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTSLKGFVFYFLLMMV 71

Query: 71  TSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           TS+ L+AKA+FS+HSYFDS NR+LLDGFLGGLMSFVLFWTFA+DIVHIF
Sbjct: 72  TSLGLVAKARFSIHSYFDSSNRVLLDGFLGGLMSFVLFWTFAFDIVHIF 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727182|ref|NP_001236896.1| uncharacterized protein LOC100526986 [Glycine max] gi|255631310|gb|ACU16022.1| unknown [Glycine max]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 95/102 (93%)

Query: 18  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 77
           N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL GFVFY L+MA+TS+ L+A
Sbjct: 19  NELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLKGFVFYLLLMALTSLGLVA 78

Query: 78  KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           KAKFS H+YFDSWNR+LLDGF GGLMSFVLFWTFAYDIVHIF
Sbjct: 79  KAKFSTHTYFDSWNRVLLDGFQGGLMSFVLFWTFAYDIVHIF 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448843|ref|XP_003594697.1| Transmembrane protein [Medicago truncatula] gi|355483745|gb|AES64948.1| Transmembrane protein [Medicago truncatula]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 94/102 (92%)

Query: 18  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 77
           N+L  FNAEN+QSNMK IYYSRTFLSIIGGV+AGILGFTGL GF+FY L+MA TSV L+A
Sbjct: 19  NELLTFNAENMQSNMKTIYYSRTFLSIIGGVVAGILGFTGLKGFIFYVLLMAFTSVGLIA 78

Query: 78  KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWTFAYDI HIF
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTFAYDIAHIF 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454297|ref|XP_003597429.1| Transmembrane protein [Medicago truncatula] gi|355486477|gb|AES67680.1| Transmembrane protein [Medicago truncatula]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 95/102 (93%)

Query: 18  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 77
           N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL GFVFY L+MA TS+ L+A
Sbjct: 19  NELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLKGFVFYALLMAFTSLGLVA 78

Query: 78  KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWTFAYDI HIF
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTFAYDIAHIF 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2157849	114	AT5G49540 "AT5G49540" [Arabido	0.915	0.956	0.733	2.6e-40
UNIPROTKB|F1NHM7	112	TMEM93 "Uncharacterized protei	0.831	0.883	0.414	7.5e-18
UNIPROTKB|Q3ZCG8	110	EMC6 "ER membrane protein comp	0.773	0.836	0.434	1.6e-17
UNIPROTKB|Q9BV81	110	EMC6 "ER membrane protein comp	0.773	0.836	0.434	3.2e-17
MGI|MGI:1913298	110	Emc6 "ER membrane protein comp	0.773	0.836	0.434	3.2e-17
RGD|1309231	110	Emc6 "ER membrane protein comp	0.773	0.836	0.434	3.2e-17
UNIPROTKB|F1N0Z5	110	EMC6 "ER membrane protein comp	0.773	0.836	0.434	4.1e-17
UNIPROTKB|E2R7Q9	110	EMC6 "Uncharacterized protein"	0.773	0.836	0.434	4.1e-17
UNIPROTKB|F1RHE3	110	EMC6 "Uncharacterized protein"	0.773	0.836	0.434	4.1e-17
DICTYBASE|DDB_G0280399	123	tmem93 "DUF786 family protein"	0.806	0.780	0.418	5.3e-17

TAIR|locus:2157849 AT5G49540 "AT5G49540" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 80/109 (73%), Positives = 94/109 (86%)

Query:    11 KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 70
             K+S D+ +D+  F+AENLQ+N+KVI  SRTFLSII GV+AGI+GF GL+GFVFYF++M I
Sbjct:     6 KRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVVMLI 65

Query:    71 TSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
             TSV LMAKA FS   YFDSWNR+L DGFLGGLMSFVLFWTFAYD+VHIF
Sbjct:    66 TSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMSFVLFWTFAYDLVHIF 114

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|F1NHM7 TMEM93 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/99 (41%), Positives = 60/99 (60%)

Query:    21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
             Q  +   ++ N  ++ Y RT +S + G  AGILG TGL GF+FYFL   + S+ L+ KA 
Sbjct:    14 QFISEAAVRGNAAILDYCRTSVSALSGATAGILGLTGLHGFIFYFLASVLLSLLLVLKAG 73

Query:    81 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
                + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    74 RRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 112

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q3ZCG8 EMC6 "ER membrane protein complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q9BV81 EMC6 "ER membrane protein complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

MGI|MGI:1913298 Emc6 "ER membrane protein complex subunit 6" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1309231 Emc6 "ER membrane protein complex subunit 6" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=IEA;ISO

UNIPROTKB|F1N0Z5 EMC6 "ER membrane protein complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|E2R7Q9 EMC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLVGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|F1RHE3 EMC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/92 (43%), Positives = 57/92 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
              S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110

GO:0072546 "ER membrane protein complex" evidence=IEA

DICTYBASE|DDB_G0280399 tmem93 "DUF786 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/98 (41%), Positives = 61/98 (62%)

Query:    23 FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA-KAKF 81
             +  E +Q N K + + +  +SI+GG IAG++GF+G+ GF+FYF I  IT   L   K   
Sbjct:    27 YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIY-ITFCSLFTLKENK 85

Query:    82 SVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 119
             ++H YF +   I  D    GLM ++LFWTF Y+I+HI+
Sbjct:    86 NLHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNIIHIY 123

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GLC5	EMC6_XENTR	No assigned EC number	0.4040	0.8319	0.9	yes	no
Q6P0F0	EMC6_DANRE	No assigned EC number	0.4070	0.9075	0.9818	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam07019	81	pfam07019, Rab5ip, Rab5-interacting protein (Rab5i	1e-24

>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip)

 Score = 88.8 bits (221), Expect = 1e-24
 Identities = 37/81 (45%), Positives = 47/81 (58%)

Query: 33  KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNR 92
            V+Y+ R  +S++ GVIAGILG TG +GF+FYFLI   TS    AK       YF     
Sbjct: 1   DVLYWVRQVISLLAGVIAGILGLTGFLGFIFYFLISLGTSYLYYAKVGKIDEEYFGGRWE 60

Query: 93  ILLDGFLGGLMSFVLFWTFAY 113
           +  +G L GL +FVL WT  Y
Sbjct: 61  LFTEGLLTGLATFVLTWTLFY 81

This family consists of several Rab5-interacting protein (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5 is rate-limiting for homotypic early endosome fusion. Rab5ip represents a novel rab5 interacting protein that may function on endocytic vesicles as a receptor for rab5-GDP and participate in the activation of rab5. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG4455	110	consensus Uncharacterized conserved protein [Funct	100.0
PF07019	81	Rab5ip: Rab5-interacting protein (Rab5ip)	99.96
KOG3415	129	consensus Putative Rab5-interacting protein [Intra	99.92
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	80.35

>KOG4455 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.7e-34  Score=196.91  Aligned_cols=106  Identities=42%  Similarity=0.735  Sum_probs=100.3

Q ss_pred             ccccccccccChhhhhhhhhHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhh
Q 033432           14 NDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRI   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~N~~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~~l   93 (119)
                      .++....+.++.+++++|.++++++|+.+|+++|++||||||||+.||++|++.+++.+.++..|+++++.+||+++.++
T Consensus         5 ~~~~~~~~~~s~aav~nN~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~~   84 (110)
T KOG4455|consen    5 KAEEVFIPIYSTAAVRNNKKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRNL   84 (110)
T ss_pred             hhhhcCCcchhHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhHH
Confidence            34455678999999999999999999999999999999999999999999999988888888889999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHhhhcceeeC
Q 033432           94 LLDGFLGGLMSFVLFWTFAYDIVHIF  119 (119)
Q Consensus        94 ~~~g~~~~l~~FvL~Wtl~Y~lvhi~  119 (119)
                      +++++++++++|||+||+.|++||+|
T Consensus        85 f~~~f~~Gl~tyVl~Wtf~Y~lv~~~  110 (110)
T KOG4455|consen   85 FTESFLGGLTTYVLAWTFFYGLVHVY  110 (110)
T ss_pred             HHHHHhchHHHHHHHHHHHhhhhccC
Confidence            99999999999999999999999997

>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)

Probab=99.96  E-value=3.8e-29  Score=165.93  Aligned_cols=81  Identities=46%  Similarity=0.911  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhhhhhhhHHHHHHHHhh
Q 033432           33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFA  112 (119)
Q Consensus        33 ~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~~l~~~g~~~~l~~FvL~Wtl~  112 (119)
                      |+++|+||++|+++|++||||||||+.||++|++++.+++++++.|.++++++||++++|+++||+++++++|||+||++
T Consensus         1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~   80 (81)
T PF07019_consen    1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF   80 (81)
T ss_pred             CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h
Q 033432          113 Y  113 (119)
Q Consensus       113 Y  113 (119)
                      |
T Consensus        81 Y   81 (81)
T PF07019_consen   81 Y   81 (81)
T ss_pred             C
Confidence            8

>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.5e-25  Score=153.43  Aligned_cols=100  Identities=22%  Similarity=0.428  Sum_probs=93.1

Q ss_pred             cccccChhhhhhhh----hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhh
Q 033432           19 DLQIFNAENLQSNM----KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRIL   94 (119)
Q Consensus        19 ~~~~~~~~~~~~N~----~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~~l~   94 (119)
                      -....++++-|..+    |+++|.||+++++.|+++||++|+|..|++.|+..+..+.++|+.+.++.+|+.|++.+|+.
T Consensus        25 ~~kl~~~da~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~  104 (129)
T KOG3415|consen   25 AAKLTDSDAEWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELL  104 (129)
T ss_pred             HHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHH
Confidence            33567777777554    99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHhhhcceee
Q 033432           95 LDGFLGGLMSFVLFWTFAYDIVHI  118 (119)
Q Consensus        95 ~~g~~~~l~~FvL~Wtl~Y~lvhi  118 (119)
                      +||+++++++|++.|+++|++.|.
T Consensus       105 kEGf~asfa~FlvtWIi~Yt~~hy  128 (129)
T KOG3415|consen  105 KEGFMASFALFLVTWIIFYTLAHY  128 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999994

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=80.35  E-value=2.1  Score=30.53  Aligned_cols=14  Identities=50%  Similarity=0.975  Sum_probs=12.3

Q ss_pred             HHHHHHHHHhhhhc
Q 033432           41 FLSIIGGVIAGILG   54 (119)
Q Consensus        41 ~~al~~Gi~aGiLg   54 (119)
                      +..+++|++|||+|
T Consensus        66 i~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   66 IIGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHH
Confidence            58899999999987

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00