Citrus Sinensis ID: 033437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEESSSC
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEEccHHHHcccc
Coil and Loop (DISEMBL)
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEgisnsspgvtqripfcyviciptiPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSlilqlpigeesssc
Flexible Loop (DISEMBL)
MAPYIEAIDSQQSSCFILKFFCDLLRIRWestrsrtkgraLEMMDKLVEGisnsspgvtqripFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIlqlpigeesssc
Low Complexity Region (SEG)
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEESSSC
Disordered region (IsUnstruct)
************SSCFILKFFCDLLRIRWEST**************LV********GVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPI*******
Disordered Region (DISOPRED)
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDK*************QRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEE****
Disordered Region (DISEMBL)
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEESSSC
Disordered Region (DISPRO)
*APYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEESSSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q54BW6	853	Tetratricopeptide repeat	yes	no	0.890	0.124	0.299	1e-05
Q5F3K0	844	Tetratricopeptide repeat	yes	no	0.714	0.100	0.247	0.0003
Q5RBW9	843	Tetratricopeptide repeat	yes	no	0.714	0.100	0.247	0.0004
Q6P3X3	843	Tetratricopeptide repeat	yes	no	0.714	0.100	0.247	0.0004
Q17QZ7	847	Tetratricopeptide repeat	yes	no	0.714	0.100	0.247	0.0008

>sp|Q54BW6|TTC27_DICDI Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium discoideum GN=ttc27 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           M PYI+    ++S+ +I+     L++ R E   S+T  RA+  +  LV+   + +   T+
Sbjct: 401 MLPYIQKT-LEKSNNWIIHSMGLLIKSRLEIVSSKTAERAVLQIQALVDQYDDPTSSATE 459

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RI   Y    P    L KE A+  +  G    A + FE L +WD  I
Sbjct: 460 RINAIYSTDYPARWDLEKEVAERFIGIGAAASAFEIFERLEMWDEAI 506

Dictyostelium discoideum (taxid: 44689)

>sp|Q5F3K0|TTC27_CHICK Tetratricopeptide repeat protein 27 OS=Gallus gallus GN=TTC27 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 44/85 (51%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           LLR + E   +R   RA++    L +   + +  V++R+   Y   +P   A++++ A L
Sbjct: 391 LLRTKLEKGSTRRMERAMKQTQALADQFEDVNTSVSERMKIFYCCQVPPHWAIQRQLASL 450

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ +E+L +W+  ++
Sbjct: 451 LFELGCTSSALQIYEELEMWEDAVI 475

Gallus gallus (taxid: 9031)

>sp|Q5RBW9|TTC27_PONAB Tetratricopeptide repeat protein 27 OS=Pongo abelii GN=TTC27 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 390 ILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASL 449

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 450 LFELGCTSSALQIFEKLEMWEDVVI 474

Pongo abelii (taxid: 9601)

>sp|Q6P3X3|TTC27_HUMAN Tetratricopeptide repeat protein 27 OS=Homo sapiens GN=TTC27 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 390 ILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASL 449

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 450 LFELGCTSSALQIFEKLEMWEDVVI 474

Homo sapiens (taxid: 9606)

>sp|Q17QZ7|TTC27_BOVIN Tetratricopeptide repeat protein 27 OS=Bos taurus GN=TTC27 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 394 ILRTKLERGSTRRVERAMRQTQALADQFEDKTASVLERLKIFYCCQVPPHWAVQRQLAGL 453

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 454 LFELGCTNSALQIFEKLEMWEDVVI 478

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
15237943	899	tetratricopeptide repeat-containing prot	0.899	0.119	0.738	1e-41
297807747	892	tetratricopeptide repeat-containing prot	0.899	0.119	0.728	1e-40
224077388	718	predicted protein [Populus trichocarpa]	0.899	0.149	0.738	2e-40
449516270	482	PREDICTED: LOW QUALITY PROTEIN: tetratri	0.907	0.224	0.685	2e-38
145358569	877	prenylyltransferase-like protein [Arabid	0.899	0.122	0.691	3e-38
10177994	856	unnamed protein product [Arabidopsis tha	0.899	0.125	0.691	3e-38
296084812	904	unnamed protein product [Vitis vinifera]	0.899	0.118	0.728	3e-38
449468426	897	PREDICTED: tetratricopeptide repeat prot	0.907	0.120	0.685	5e-38
297807751	871	predicted protein [Arabidopsis lyrata su	0.899	0.122	0.691	7e-38
359480921	909	PREDICTED: tetratricopeptide repeat prot	0.899	0.117	0.728	1e-37

>gi|15237943|ref|NP_197229.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|10177072|dbj|BAB10514.1| unnamed protein product [Arabidopsis thaliana] gi|332005024|gb|AED92407.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 91/107 (85%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWESTR RTKGRALEMMDKLV  I+ S PGV+ 
Sbjct: 413 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSN 472

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RIP CY + +PTIPALRKEY +LLVSCGL+GEAI  FE L LWD+LI
Sbjct: 473 RIPLCYAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLI 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807747|ref|XP_002871757.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317594|gb|EFH48016.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 90/107 (84%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWESTR RTKGRALEMMDKLV  I+ S PGV+ 
Sbjct: 407 MAPYIEAIDSQKSTHFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSN 466

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RIP CY + +PTI ALRKEY +LLVSCGL+GEAI  FE L LWD+LI
Sbjct: 467 RIPLCYAVHLPTISALRKEYGELLVSCGLVGEAITIFESLELWDNLI 513

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077388|ref|XP_002305241.1| predicted protein [Populus trichocarpa] gi|222848205|gb|EEE85752.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 90/107 (84%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAP+IE IDSQ +S F L+ FCDLLRIRWE TRSRTK RALEMM+KLVEG+ NS PGV Q
Sbjct: 226 MAPFIETIDSQPTSFFTLRCFCDLLRIRWEKTRSRTKQRALEMMEKLVEGMHNSLPGVAQ 285

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RIPFCY+  IPTIPALRKE+ +LL+SCGL+GEAI  FE L LWD+LI
Sbjct: 286 RIPFCYIANIPTIPALRKEHGELLISCGLMGEAITIFESLELWDNLI 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516270|ref|XP_004165170.1| PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 27 homolog, partial [Cucumis sativus]

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/108 (68%), Positives = 91/108 (84%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAID+QQSS F+++FFC++LR+RWES+RSRTK RAL MM+KLVEG  +  PGV Q
Sbjct: 11  MAPYIEAIDTQQSSLFMVRFFCNILRVRWESSRSRTKERALVMMEKLVEGYYDCYPGVVQ 70

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIL 108
           R+ FC  + +PT PALRKEY +LLVSCGLIGEA+K FE+L LWD+LI 
Sbjct: 71  RMFFCCGVYVPTFPALRKEYGELLVSCGLIGEAVKIFEELELWDNLIF 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358569|ref|NP_198529.3| prenylyltransferase-like protein [Arabidopsis thaliana] gi|332006762|gb|AED94145.1| prenylyltransferase-like protein [Arabidopsis thaliana]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 88/107 (82%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWES+R RT+ RA +MMDKLV  IS S PGV+ 
Sbjct: 405 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKSDPGVSN 464

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RIP CY + +PTIPALRKEY +LLVSCG +GEAI  FE L LWD+LI
Sbjct: 465 RIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLI 511

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177994|dbj|BAB11367.1| unnamed protein product [Arabidopsis thaliana]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 88/107 (82%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWES+R RT+ RA +MMDKLV  IS S PGV+ 
Sbjct: 405 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKSDPGVSN 464

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RIP CY + +PTIPALRKEY +LLVSCG +GEAI  FE L LWD+LI
Sbjct: 465 RIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLI 511

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084812|emb|CBI27694.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/107 (72%), Positives = 89/107 (83%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAP+IEAIDSQQS  FI++  CD+LRIRWESTR RTK RAL MMDKLV+GI   SPGV Q
Sbjct: 429 MAPFIEAIDSQQSLNFIIRCCCDILRIRWESTRGRTKERALLMMDKLVQGIYACSPGVAQ 488

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RI FCY + +PTI ALRKEY +LLVSCGLIGEAIK FED+ LW++LI
Sbjct: 489 RINFCYGVYLPTIHALRKEYGELLVSCGLIGEAIKIFEDIELWNNLI 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468426|ref|XP_004151922.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis sativus]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 91/108 (84%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAID+QQSS F+++FFC++LR+RWES+RSRTK RAL MM+KLVEG  +  PGV Q
Sbjct: 426 MAPYIEAIDTQQSSLFMVRFFCNILRVRWESSRSRTKERALVMMEKLVEGYYDCYPGVVQ 485

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIL 108
           R+ FC  + +PT PALRKEY +LLVSCGLIGEA+K FE+L LWD+LI 
Sbjct: 486 RMFFCCGVYVPTFPALRKEYGELLVSCGLIGEAVKIFEELELWDNLIF 533

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807751|ref|XP_002871759.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317596|gb|EFH48018.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 87/107 (81%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWES+R RT+ RA +MMDKLV  IS S PGV+ 
Sbjct: 401 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKSDPGVSN 460

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RIP CY + +PTIPALRKEY +LLVSCG  GEAI  FE L LWD+LI
Sbjct: 461 RIPLCYAVYLPTIPALRKEYGELLVSCGYAGEAITIFESLELWDNLI 507

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480921|ref|XP_002268108.2| PREDICTED: tetratricopeptide repeat protein 27 homolog [Vitis vinifera]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 89/107 (83%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           MAP+IEAIDSQQS  FI++  CD+LRIRWESTR RTK RAL MMDKLV+GI   SPGV Q
Sbjct: 429 MAPFIEAIDSQQSLNFIIRCCCDILRIRWESTRGRTKERALLMMDKLVQGIYACSPGVAQ 488

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RI FCY + +PTI ALRKEY +LLVSCGLIGEAIK FED+ LW++LI
Sbjct: 489 RINFCYGVYLPTIHALRKEYGELLVSCGLIGEAIKIFEDIELWNNLI 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2167165	899	AT5G17270 [Arabidopsis thalian	0.991	0.131	0.680	1.4e-38
TAIR|locus:2166153	877	AT5G37130 [Arabidopsis thalian	0.991	0.134	0.638	8.2e-36
UNIPROTKB|Q6P3X3	843	TTC27 "Tetratricopeptide repea	0.714	0.100	0.247	0.00031
MGI|MGI:1921446	847	Ttc27 "tetratricopeptide repea	0.714	0.100	0.247	0.00083

TAIR|locus:2167165 AT5G17270 [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 81/119 (68%), Positives = 98/119 (82%)

Query:     1 MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
             MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWESTR RTKGRALEMMDKLV  I+ S PGV+ 
Sbjct:   413 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSN 472

Query:    61 RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIL-QLPIGEESSS 118
             RIP CY + +PTIPALRKEY +LLVSCGL+GEAI  FE L LWD+LI     +G++S++
Sbjct:   473 RIPLCYAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAA 531

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166153 AT5G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.2e-36, P = 8.2e-36
 Identities = 76/119 (63%), Positives = 95/119 (79%)

Query:     1 MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
             MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWES+R RT+ RA +MMDKLV  IS S PGV+ 
Sbjct:   405 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKSDPGVSN 464

Query:    61 RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIL-QLPIGEESSS 118
             RIP CY + +PTIPALRKEY +LLVSCG +GEAI  FE L LWD+LI     +G++S++
Sbjct:   465 RIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLIYCYCSMGKKSAA 523

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

UNIPROTKB|Q6P3X3 TTC27 "Tetratricopeptide repeat protein 27" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query:    24 LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
             +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct:   390 ILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASL 449

Query:    84 LVSCGLIGEAIKNFEDLVLWDSLIL 108
             L   G    A++ FE L +W+ +++
Sbjct:   450 LFELGCTSSALQIFEKLEMWEDVVI 474

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1921446 Ttc27 "tetratricopeptide repeat domain 27" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 0.00083, P = 0.00083
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query:    24 LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
             +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct:   394 ILRTKLERGSTRRVERAMRQTQALADQFEDKATSVLERLKIFYCCQVPPHWAVQRQLAGL 453

Query:    84 LVSCGLIGEAIKNFEDLVLWDSLIL 108
             L   G    A++ FE L +W+ +++
Sbjct:   454 LFELGCTSSALQIFEKLEMWEDVVI 478


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  11 22  0.44    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.11u 0.12s 12.23t   Elapsed:  00:00:00
  Total cpu time:  12.11u 0.12s 12.23t   Elapsed:  00:00:00
  Start:  Sat May 11 03:10:35 2013   End:  Sat May 11 03:10:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG1128	777	consensus Uncharacterized conserved protein, conta	100.0
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	87.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.44
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	82.67

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=100.00  E-value=7.1e-35  Score=255.68  Aligned_cols=118  Identities=33%  Similarity=0.449  Sum_probs=115.0

Q ss_pred             ChhHHHHHHhccCCchHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhcCCCCCcccchhhhhhcCCCcHhHHHHHH
Q 033437            1 MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEY   80 (119)
Q Consensus         1 m~pyi~~vl~~~~~~w~v~s~aLl~Rs~lE~~r~rtvERa~lQmq~LVd~~~~~~~~~~~Rl~~~~~~~~pp~W~l~~el   80 (119)
                      |.||++++|+|+..+|+|+.+|||+|+++|++++||||||+.|||.+|++++..++++.+|+.|+|+..+||+|++++++
T Consensus       325 l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~l  404 (777)
T KOG1128|consen  325 LEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLL  404 (777)
T ss_pred             HHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHH
Confidence            57999999999977999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHhhcHHHHHHHhHhhcccCC
Q 033437           81 AKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEESSS  118 (119)
Q Consensus        81 a~~~~slG~~~sAl~ife~LemWe~vI~Cy~~l~~~~~  118 (119)
                      |+.++|+|++|||++|||||+||++||.||..+|+++|
T Consensus       405 aell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~k  442 (777)
T KOG1128|consen  405 AELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGK  442 (777)
T ss_pred             HHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccch
Confidence            99999999999999999999999999999999998765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=87.54  E-value=5.6  Score=33.97  Aligned_cols=73  Identities=25%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhcCCCCCcccchhhhhhcCCCcHhHHHHHHHHHHHhcccHHHHHHHHHH
Q 033437           20 FFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFED   99 (119)
Q Consensus        20 s~aLl~Rs~lE~~r~rtvERa~lQmq~LVd~~~~~~~~~~~Rl~~~~~~~~pp~W~l~~ela~~~~slG~~~sAl~ife~   99 (119)
                      +.+=|.|||=|      |+||+.-=|.|++   .++-+..+|+.-++            +||+-|++-|.+.-|-+||..
T Consensus        74 tLGnLfRsRGE------vDRAIRiHQ~L~~---spdlT~~qr~lAl~------------qL~~Dym~aGl~DRAE~~f~~  132 (389)
T COG2956          74 TLGNLFRSRGE------VDRAIRIHQTLLE---SPDLTFEQRLLALQ------------QLGRDYMAAGLLDRAEDIFNQ  132 (389)
T ss_pred             HHHHHHHhcch------HHHHHHHHHHHhc---CCCCchHHHHHHHH------------HHHHHHHHhhhhhHHHHHHHH
Confidence            55778888877      6899999999984   34445667775544            899999999999999888888


Q ss_pred             hhc---------------------HHHHHHHhHhh
Q 033437          100 LVL---------------------WDSLILQLPIG  113 (119)
Q Consensus       100 Lem---------------------We~vI~Cy~~l  113 (119)
                      |--                     |+.+|+|-..+
T Consensus       133 L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L  167 (389)
T COG2956         133 LVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL  167 (389)
T ss_pred             HhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            765                     99999986543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.44  E-value=1.4  Score=24.32  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=16.7

Q ss_pred             HHHHHHHhcccHHHHHHHHHH
Q 033437           79 EYAKLLVSCGLIGEAIKNFED   99 (119)
Q Consensus        79 ela~~~~slG~~~sAl~ife~   99 (119)
                      .||+.+...|-...|+++|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            578888888888888888887

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=82.67  E-value=2.7  Score=31.90  Aligned_cols=91  Identities=14%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             chHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhcCCCCCcccchhhhhh-cCCCcHhHHHHHHHHHHHhccc----
Q 033437           15 CFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYV-ICIPTIPALRKEYAKLLVSCGL----   89 (119)
Q Consensus        15 ~w~v~s~aLl~Rs~lE~~r~rtvERa~lQmq~LVd~~~~~~~~~~~Rl~~~~~-~~~pp~W~l~~ela~~~~slG~----   89 (119)
                      .|.+....-++||..+.+-.  ++..+-  .-||+.+-+..-  ..++..+-. --+|+    .+++|-.++|+|.    
T Consensus         7 ~yli~vllEYirSl~~~~i~--~~~~L~--~lli~lLi~~~~--~~~L~qllq~~Vi~D----Sk~lA~~LLs~~~~~~~   76 (167)
T PF07035_consen    7 RYLIAVLLEYIRSLNQHNIP--VQHELY--ELLIDLLIRNGQ--FSQLHQLLQYHVIPD----SKPLACQLLSLGNQYPP   76 (167)
T ss_pred             HHHHHHHHHHHHHHHHcCCC--CCHHHH--HHHHHHHHHcCC--HHHHHHHHhhcccCC----cHHHHHHHHHhHccChH
Confidence            67888888899998886643  444421  113333332221  223322211 12222    2788999999976    


Q ss_pred             -HHHHHHHHHHhh-cHHHHHHHhHhhcc
Q 033437           90 -IGEAIKNFEDLV-LWDSLILQLPIGEE  115 (119)
Q Consensus        90 -~~sAl~ife~Le-mWe~vI~Cy~~l~~  115 (119)
                       ..-|+|++.||+ .-|++|.|+-.-|+
T Consensus        77 ~~Ql~lDMLkRL~~~~~~iievLL~~g~  104 (167)
T PF07035_consen   77 AYQLGLDMLKRLGTAYEEIIEVLLSKGQ  104 (167)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhCCC
Confidence             788999999999 99999999877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.33
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	82.71
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	82.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	82.08

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.33  E-value=1.6  Score=35.85  Aligned_cols=43  Identities=12%  Similarity=-0.186  Sum_probs=28.1

Q ss_pred             HhHHHHHHHHHHHhcccHHHHHHHHHHhhcHHHHHHHhHhhcc
Q 033437           73 IPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEE  115 (119)
Q Consensus        73 ~W~l~~ela~~~~slG~~~sAl~ife~LemWe~vI~Cy~~l~~  115 (119)
                      ..+.-.++|+....-|....|...|.+++.+++++.+|..+|+
T Consensus       722 ~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~  764 (814)
T 3mkq_A          722 NKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR  764 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence            4444456666666666666666666666666666666666665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=82.71  E-value=9.9  Score=26.45  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             cchhhHHHHHHHHHHhhhcCCCCC--cccchhhhhhcCCCcHhHHHHHHHHHHHhcccHHHHHHHHHHh-----------
Q 033437           34 SRTKGRALEMMDKLVEGISNSSPG--VTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDL-----------  100 (119)
Q Consensus        34 ~rtvERa~lQmq~LVd~~~~~~~~--~~~Rl~~~~~~~~pp~W~l~~ela~~~~slG~~~sAl~ife~L-----------  100 (119)
                      ....+.|+..++.+++.++++...  +..|+..+..    ..=.....+|..+...|-..+|+..|+++           
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  184 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATR  184 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccH
Confidence            456789999999999988766432  2223322221    01112246788999999999999999874           


Q ss_pred             hcHHHHHHHhHhhcccC
Q 033437          101 VLWDSLILQLPIGEESS  117 (119)
Q Consensus       101 emWe~vI~Cy~~l~~~~  117 (119)
                      +.|.....||..+|+.+
T Consensus       185 ~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          185 DALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCCcH
Confidence            45777888888888753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=82.64  E-value=2.7  Score=27.14  Aligned_cols=38  Identities=5%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             HHHHHHHHhcccHHHHHHHHHH--------hhcHHHHHHHhHhhcc
Q 033437           78 KEYAKLLVSCGLIGEAIKNFED--------LVLWDSLILQLPIGEE  115 (119)
Q Consensus        78 ~ela~~~~slG~~~sAl~ife~--------LemWe~vI~Cy~~l~~  115 (119)
                      +++|..+...|-+..|++.|++        ...|-+...||..+|+
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~   57 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK   57 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh
Confidence            4566666666666666666654        2334455555555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=82.08  E-value=3.6  Score=25.27  Aligned_cols=45  Identities=18%  Similarity=0.064  Sum_probs=29.3

Q ss_pred             cHhHHHHHHHHHHHhcccHHHHHHHHHHh--------hcHHHHHHHhHhhccc
Q 033437           72 TIPALRKEYAKLLVSCGLIGEAIKNFEDL--------VLWDSLILQLPIGEES  116 (119)
Q Consensus        72 p~W~l~~ela~~~~slG~~~sAl~ife~L--------emWe~vI~Cy~~l~~~  116 (119)
                      ......-.+|..+...|-...|++.|++.        ..|-....||..+|+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~   57 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT   57 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence            33444556777777777777777777764        4466666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	85.98
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	83.43
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	82.48

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.98  E-value=0.64  Score=29.87  Aligned_cols=39  Identities=15%  Similarity=0.081  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcccHHHHHHHHHH-hh-------cHHHHHHHhHhhccc
Q 033437           78 KEYAKLLVSCGLIGEAIKNFED-LV-------LWDSLILQLPIGEES  116 (119)
Q Consensus        78 ~ela~~~~slG~~~sAl~ife~-Le-------mWe~vI~Cy~~l~~~  116 (119)
                      ++.|+.++.-|-+..|++.|++ |+       .|.+...||..+|+-
T Consensus         8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~   54 (201)
T d2c2la1           8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP   54 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhh
Confidence            3668888888888888888865 33       477777777777754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.43  E-value=0.25  Score=37.57  Aligned_cols=38  Identities=11%  Similarity=0.012  Sum_probs=25.1

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHhhcHHHHHHHhHhhcc
Q 033437           78 KEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEE  115 (119)
Q Consensus        78 ~ela~~~~slG~~~sAl~ife~LemWe~vI~Cy~~l~~  115 (119)
                      .+.|+++.+-|....|..+|..+.-|+.++.||..+++
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~   55 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE   55 (336)
T ss_dssp             -----------CTTTHHHHHHHTTCHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhcc
Confidence            57889999999999999999999999999999998875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.48  E-value=1.4  Score=27.99  Aligned_cols=65  Identities=8%  Similarity=-0.024  Sum_probs=43.4

Q ss_pred             cCcchhhHHHHHHHHHHhhhcCCCCCcccchhhhhhcCCCcHhHHHHHHHHHHHhcccHHHHHHHHHHh--------hcH
Q 033437           32 TRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDL--------VLW  103 (119)
Q Consensus        32 ~r~rtvERa~lQmq~LVd~~~~~~~~~~~Rl~~~~~~~~pp~W~l~~ela~~~~slG~~~sAl~ife~L--------emW  103 (119)
                      .+.+.-+.|+.-.+..++.                   -|..+..-..+|..++.+|....|++.|++.        +-|
T Consensus        21 ~~~~~y~~A~~~~~~al~~-------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIEL-------------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHcCCHHHHHHHhhhcccc-------------------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            3444555566666666653                   2344555577889999999999998888764        556


Q ss_pred             HHHHHHhHhhcc
Q 033437          104 DSLILQLPIGEE  115 (119)
Q Consensus       104 e~vI~Cy~~l~~  115 (119)
                      -....||..+|+
T Consensus        82 ~~~g~~~~~~g~   93 (159)
T d1a17a_          82 YRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            666666666665