Citrus Sinensis ID: 033441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHcHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccEEccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccEcccccEEEEEEcc
Coil and Loop (DISEMBL)
mssanqvrASHILIkhqgsrrkaswkdpegrvisnttRESAVSQLQAIRDDIVSGKAKFDEVASrlsdcssakrggdlgnfgrgqmqkpfeeatynlkigeisevvdtdsgvhlIMRTG
Flexible Loop (DISEMBL)
mssanqvrashilikhqgsrrkaswkdpegrvisnttresavsqlqaIRDDIVSGKAKFDEVasrlsdcssakrggdlgnfgrgqmqkpfEEATYNLKIGeisevvdtdsgvhlimrtg
Low Complexity Region (SEG)
MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG
Disordered region (IsUnstruct)
********************************************************************************************ATYNLKIGEISEVVDTDSGVHL*****
Disordered Region (DISOPRED)
*****QVRASHILIKHQGSRR*****************ESAVSQLQAIRDDIVSGKAKFDE**************G**GNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG
Disordered Region (DISEMBL)
*********SHILIK****************VISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG
Disordered Region (DISPRO)
****NQVRASHILIKHQG**RKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVAS*LSDCS*****GDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q94G00	121	Peptidyl-prolyl cis-trans	N/A	no	0.991	0.975	0.805	2e-53
Q9SL42	119	Peptidyl-prolyl cis-trans	yes	no	1.0	1.0	0.781	3e-52
Q9LEK8	118	Peptidyl-prolyl cis-trans	N/A	no	0.983	0.991	0.726	6e-46
P54353	166	Putative peptidyl-prolyl	yes	no	0.907	0.650	0.5	2e-27
P0C1J8	150	Peptidyl-prolyl cis-trans	N/A	no	0.924	0.733	0.526	3e-27
Q5BIN5	163	Peptidyl-prolyl cis-trans	yes	no	0.932	0.680	0.486	4e-25
Q13526	163	Peptidyl-prolyl cis-trans	yes	no	0.915	0.668	0.495	4e-25
Q4R383	163	Peptidyl-prolyl cis-trans	N/A	no	0.915	0.668	0.495	4e-25
Q9QUR7	165	Peptidyl-prolyl cis-trans	yes	no	0.915	0.660	0.486	8e-25
O60045	182	Peptidyl-prolyl cis-trans	N/A	no	0.907	0.593	0.508	6e-24

>sp|Q94G00|PIN1_MALDO Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 111/118 (94%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
           S+ NQVRASHILIKHQGSRRKASWKDPEG++I NTTR+SAVSQL+A+RDDI+SGKAKFD+
Sbjct: 4   SAGNQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKFDD 63

Query: 62  VASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           +A+R SDCSSAKRGGDLG FGR QMQKPFEEAT+ LK+GE+S++VDTDSGVH+I RTG
Sbjct: 64  LAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121

Prolyl cis/trans isomerase with specificity for phospho-Ser-Pro bonds.
Malus domestica (taxid: 3750)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9SL42|PIN1_ARATH Peptidyl-prolyl cis-trans isomerase Pin1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 111/119 (93%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 1   MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 60

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT 
Sbjct: 61  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

Prolyl cis/trans isomerase with specificity for phospho-Ser-Pro bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9LEK8|PIN1_DIGLA Peptidyl-prolyl cis-trans isomerase Pin1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1

 Score =  182 bits (461), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 103/117 (88%)

Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
           S+ +VRASHILIKHQGSRRK+SWKDP+G +IS TTR+ AVSQLQ++R +++S  A F ++
Sbjct: 2   SSEKVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDL 61

Query: 63  ASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           ASR S CSSAKRGGDLG FGRGQMQKPFEEAT+ LK+GEIS++VDTDSGVH+I RTG
Sbjct: 62  ASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRTG 118

Prolyl cis/trans isomerase with specificity for phospho-Ser-Pro bonds.

Digitalis lanata (taxid: 49450)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P54353|DOD_DROME Putative peptidyl-prolyl cis-trans isomerase dodo OS=Drosophila melanogaster GN=dod PE=2 SV=3

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 81/116 (69%), Gaps = 8/116 (6%)

Query: 4   ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTR--ESAVSQLQAIRDDIVSGKAKFDE 61
            ++V   H+L+KH+GSRR +SW++      +N TR  E A   L+  R+ IV  +A FDE
Sbjct: 55  PDEVHCLHLLVKHKGSRRPSSWRE------ANITRTKEEAQLLLEVYRNKIVQQEATFDE 108

Query: 62  VASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
           +A   SDCSSAKRGGDLG FGRGQMQ  FE+A + L + ++S +VD+DSG+H+I+R
Sbjct: 109 LARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1J8|PIN1_RHIO9 Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=pin1 PE=3 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VRASH+LIK + SRR +SW++         ++E A+  L   +  I SG+     +A+ 
Sbjct: 41  RVRASHLLIKSRESRRPSSWREEH----ITRSKEEALKILTDFQHKIESGQETLSALATN 96

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
            SDC+SAKRGGDLG F RGQMQKPFEEAT+ L++GE+S+ V TDSGVHLI+RT 
Sbjct: 97  YSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRTA 150

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Catalyzes pSer/Thr-Pro cis/trans isomerizations.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5BIN5|PIN1_BOVIN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus GN=PIN1 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 77/115 (66%), Gaps = 4/115 (3%)

Query: 4   ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
             +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +A
Sbjct: 52  PTRVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLA 107

Query: 64  SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
           S+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 108 SQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation (By similarity). Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13526|PIN1_HUMAN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens GN=PIN1 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation. Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4R383|PIN1_MACFA Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Macaca fascicularis GN=PIN1 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation (By similarity). Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.

Macaca fascicularis (taxid: 9541)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QUR7|PIN1_MOUSE Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1

 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 4/113 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       ++E A+  +      I SG+  F+ +AS+
Sbjct: 56  KVRCSHLLVKHSQSRRPSSWRQEK----ITRSKEEALELINGYIQKIKSGEEDFESLASQ 111

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 112 FSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164

Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation (By similarity). Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|O60045|SSP1_NEUCR Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ssp-1 PE=1 SV=3

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 4/112 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           ++R +H+L+KH  SRR +SW++ E   I+ T +E A++ LQ     I SG     E+A  
Sbjct: 73  KIRCAHLLVKHNQSRRPSSWRESE---ITRTKQE-ALTTLQGFEQRIKSGSISLGELALT 128

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
            SDCSSA++ GDLG FGRG MQK FE+A + LK GEIS +VDT SG+HLI R
Sbjct: 129 ESDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISGIVDTASGLHLIER 180

Site-specific PPIase with respect to the amino acid N-terminal to the proline residue. Peptides with glutamate, phosphoserine, or phosphothreonine in the -1 position are the best substrates. It is not only able to isomerize small peptides but is also active in protein folding.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
224097152	122	predicted protein [Populus trichocarpa]	0.991	0.967	0.813	1e-52
38258219	121	RecName: Full=Peptidyl-prolyl cis-trans	0.991	0.975	0.805	1e-51
225431173	118	PREDICTED: peptidyl-prolyl cis-trans iso	0.983	0.991	0.811	1e-51
449457542	122	PREDICTED: peptidyl-prolyl cis-trans iso	0.957	0.934	0.815	4e-51
15227956	119	Peptidyl-prolyl cis-trans isomerase Pin1	1.0	1.0	0.781	1e-50
22218833	139	Chain A, Solution Structure Of Pin1at Fr	0.991	0.848	0.788	2e-50
297832446	119	PIN1AT [Arabidopsis lyrata subsp. lyrata	1.0	1.0	0.781	2e-50
312282999	119	unnamed protein product [Thellungiella h	1.0	1.0	0.773	5e-50
152955221	122	parvulin-type peptidyl-prolyl cis/trans	0.949	0.926	0.823	8e-50
356559316	126	PREDICTED: peptidyl-prolyl cis-trans iso	0.949	0.896	0.814	9e-50

>gi|224097152|ref|XP_002310854.1| predicted protein [Populus trichocarpa] gi|222853757|gb|EEE91304.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 113/118 (95%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
           +S  QVRASHILIKH+GSRRKASWKDPEGRVI NTTR+SA+S+L+AIR+DIVSGKAKF++
Sbjct: 5   ASGTQVRASHILIKHEGSRRKASWKDPEGRVIKNTTRDSAISELKAIREDIVSGKAKFED 64

Query: 62  VASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           VASR+SDCSSAKRGGDLG FGRGQMQKPFEE T++LK+GEIS++VDTDSGVH+I+RTG
Sbjct: 65  VASRISDCSSAKRGGDLGPFGRGQMQKPFEETTFSLKVGEISDIVDTDSGVHIILRTG 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38258219|sp|Q94G00.1|PIN1_MALDO RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1; Short=PPIase Pin1; AltName: Full=MdPin1; AltName: Full=Rotamase Pin1 gi|15077233|gb|AAK83088.1|AF290200_1 Pin1-type peptidyl-prolyl cis/trans isomerase [Malus x domestica]

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 111/118 (94%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
           S+ NQVRASHILIKHQGSRRKASWKDPEG++I NTTR+SAVSQL+A+RDDI+SGKAKFD+
Sbjct: 4   SAGNQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKFDD 63

Query: 62  VASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           +A+R SDCSSAKRGGDLG FGR QMQKPFEEAT+ LK+GE+S++VDTDSGVH+I RTG
Sbjct: 64  LAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431173|ref|XP_002269631.1| PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Vitis vinifera] gi|297735030|emb|CBI17392.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 111/117 (94%)

Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
           S+NQVRASHILIKHQ SRRKASW+DPEGRVI  TT+ESAV+Q++AIRDDI+SGK+KF +V
Sbjct: 2   SSNQVRASHILIKHQDSRRKASWRDPEGRVIKATTKESAVTQIKAIRDDIISGKSKFSDV 61

Query: 63  ASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           AS++SDCSSAKRGGDLG FGRGQMQKPFEEATY LK+GEIS++V+TDSGVH+IMRTG
Sbjct: 62  ASQISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVETDSGVHIIMRTG 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457542|ref|XP_004146507.1| PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Cucumis sativus] gi|449499971|ref|XP_004160967.1| PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Cucumis sativus]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 106/114 (92%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           QVRASHILIKHQGSRR ASWKDPEGR+I NTTRESAVSQL  IR+DI+SGKAKF+++A+R
Sbjct: 9   QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRNDIISGKAKFEDIATR 68

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           +SDCSSAKRGGDLG FGRGQMQKPFEEATY LK+GEIS+++DTDSGVH+I RT 
Sbjct: 69  ISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIIDTDSGVHIIKRTA 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227956|ref|NP_179395.1| Peptidyl-prolyl cis-trans isomerase Pin1 [Arabidopsis thaliana] gi|38258260|sp|Q9SL42.1|PIN1_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1; Short=PPIase Pin1; AltName: Full=PIN1At; AltName: Full=Rotamase Pin1 gi|13430812|gb|AAK26028.1|AF360318_1 putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|4406814|gb|AAD20122.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|15810551|gb|AAL07163.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|15982815|gb|AAL09755.1| At2g18040/T27K22.9 [Arabidopsis thaliana] gi|21537274|gb|AAM61615.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|330251625|gb|AEC06719.1| Peptidyl-prolyl cis-trans isomerase Pin1 [Arabidopsis thaliana]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 111/119 (93%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 1   MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 60

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT 
Sbjct: 61  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22218833|pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 111/118 (94%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 21  MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 80

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
           EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct: 81  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832446|ref|XP_002884105.1| PIN1AT [Arabidopsis lyrata subsp. lyrata] gi|297329945|gb|EFH60364.1| PIN1AT [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 110/119 (92%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 1   MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 60

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           EVA+R+SDCSSAKRGGDLG FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT 
Sbjct: 61  EVATRVSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282999|dbj|BAJ34365.1| unnamed protein product [Thellungiella halophila]

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 110/119 (92%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 1   MASRDQVKASHILIKHQGSRRKASWKDPEGKIIMTTTREAAVEQLKSIREDIVSGKANFE 60

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           +VA+R+SDCSSAKRGGDLG FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT 
Sbjct: 61  DVATRVSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|152955221|emb|CAM59671.1| parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus] gi|388496576|gb|AFK36354.1| unknown [Lotus japonicus]

 Score =  200 bits (509), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 106/113 (93%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VRASHILIKHQGSRRKASWKDPEGRVI NTTRESAV+QL  +R+DI+SGKA F++VASR
Sbjct: 9   EVRASHILIKHQGSRRKASWKDPEGRVIKNTTRESAVAQLSTLREDILSGKANFEDVASR 68

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
           +SDCSSAKRGGDLG FGRGQMQKPFEEAT+ LK+G+ISE+VDTDSGVH+I RT
Sbjct: 69  ISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGDISEIVDTDSGVHIIKRT 121

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559316|ref|XP_003547946.1| PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Glycine max]

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 107/113 (94%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VRASHILIKH+GSRRKASWKDPEGR+I +TTRE+AVSQL+A+RDDIVSGKA F+++ASR
Sbjct: 13  EVRASHILIKHEGSRRKASWKDPEGRIIKSTTRENAVSQLKALRDDIVSGKASFEDIASR 72

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAKRGGDLG FGRGQMQKPFEEAT+ LK+GEIS++VDTDSGVH+I RT
Sbjct: 73  FSDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRT 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2060922	119	PIN1AT ""peptidylprolyl cis/tr	0.991	0.991	0.788	7.7e-48
CGD|CAL0002734	177	ESS1 [Candida albicans (taxid:	0.932	0.627	0.526	1e-27
UNIPROTKB|Q59KZ2	177	ESS1 "Putative uncharacterized	0.932	0.627	0.526	1e-27
ZFIN|ZDB-GENE-040426-1714	159	pin1 "protein (peptidyl-prolyl	0.924	0.691	0.517	2.8e-27
DICTYBASE|DDB_G0268618	268	pinA "Peptidyl-prolyl cis-tran	0.941	0.417	0.508	3.5e-27
FB|FBgn0015379	166	dod "dodo" [Drosophila melanog	0.915	0.656	0.504	2.5e-26
UNIPROTKB|G4N0C2	178	MGG_07389 "Peptidyl-prolyl cis	0.924	0.617	0.552	1.8e-25
UNIPROTKB|Q5BIN5	163	PIN1 "Peptidyl-prolyl cis-tran	0.915	0.668	0.504	1.2e-24
UNIPROTKB|F1P6C1	163	PIN1 "Uncharacterized protein"	0.915	0.668	0.504	1.2e-24
UNIPROTKB|Q13526	163	PIN1 "Peptidyl-prolyl cis-tran	0.915	0.668	0.504	1.2e-24

TAIR|locus:2060922 PIN1AT ""peptidylprolyl cis/trans isomerase, NIMA-interacting 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/118 (78%), Positives = 111/118 (94%)

Query:     1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
             M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct:     1 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 60

Query:    61 EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
             EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct:    61 EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 118

GO:0016853 "isomerase activity" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IGI

GO:0051726 "regulation of cell cycle" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

CGD|CAL0002734 ESS1 [Candida albicans (taxid:5476)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/114 (52%), Positives = 83/114 (72%)

Query:     6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
             QVR SH+LIK+  SR+  SWK P+G  IS T R+ ++  L+   + I+SG+ K  E+A+ 
Sbjct:    67 QVRVSHLLIKNNQSRKPKSWKSPDG--ISRT-RDESIQILKKHLERILSGEVKLSELANT 123

Query:    66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
              SDCSS  RGGDLG F +GQMQ PFEEA +NL +GE+S +++T+SGVH++ RTG
Sbjct:   124 ESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IGI;ISS;IDA

GO:0009405 "pathogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000993 "RNA polymerase II core binding" evidence=IEA

GO:0036168 "filamentous growth of a population of unicellular organisms in response to heat" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0045899 "positive regulation of RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0006369 "termination of RNA polymerase II transcription" evidence=IEA

GO:2000749 "positive regulation of chromatin silencing at rDNA" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0031064 "negative regulation of histone deacetylation" evidence=IEA

GO:2000059 "negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000117 "regulation of transcription involved in G2/M-phase of mitotic cell cycle" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

UNIPROTKB|Q59KZ2 ESS1 "Putative uncharacterized protein ESS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/114 (52%), Positives = 83/114 (72%)

Query:     6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
             QVR SH+LIK+  SR+  SWK P+G  IS T R+ ++  L+   + I+SG+ K  E+A+ 
Sbjct:    67 QVRVSHLLIKNNQSRKPKSWKSPDG--ISRT-RDESIQILKKHLERILSGEVKLSELANT 123

Query:    66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
              SDCSS  RGGDLG F +GQMQ PFEEA +NL +GE+S +++T+SGVH++ RTG
Sbjct:   124 ESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IGI;ISS;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IGI;ISS;IDA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0036168 "filamentous growth of a population of unicellular organisms in response to heat" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

ZFIN|ZDB-GENE-040426-1714 pin1 "protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 59/114 (51%), Positives = 86/114 (75%)

Query:     6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
             +VR SH+L+KH  SRR +SW++     I+ + ++ A+  +Q   + I SG+ +F+ +AS+
Sbjct:    50 KVRCSHLLVKHSQSRRPSSWREEN---ITRS-KDEALQLIQKYIEQIKSGEEEFESLASQ 105

Query:    66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
              SDCSSA+ GGDLG FGRGQMQKPFE+A++ LK+G++S  V TDSGVH+I+RTG
Sbjct:   106 FSDCSSARNGGDLGLFGRGQMQKPFEDASFALKVGDMSGPVFTDSGVHIILRTG 159

GO:0016853 "isomerase activity" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

DICTYBASE|DDB_G0268618 pinA "Peptidyl-prolyl cis-trans isomerase ESS1" [Dictyostelium discoideum (taxid:44689)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/116 (50%), Positives = 82/116 (70%)

Query:     2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
             S    V   H+L+KHQGSR  +SW+  E ++    T+E A+++L   R  I+SG A F++
Sbjct:   155 SEPKTVTCRHLLVKHQGSRNPSSWR--ESKI--TRTKERAIAKLNEYRATIISGSATFED 210

Query:    62 VASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
             +A + SDCSSAKRGG L  F RGQMQ+PFE+  ++LK+GE+S +VDTDSGVH+I R
Sbjct:   211 LAHKNSDCSSAKRGGYLDPFKRGQMQRPFEDCAFSLKVGEVSGIVDTDSGVHIIER 266

GO:0016853 "isomerase activity" evidence=IEA

FB|FBgn0015379 dod "dodo" [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 57/113 (50%), Positives = 80/113 (70%)

Query:     5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVAS 64
             ++V   H+L+KH+GSRR +SW+  E  +    T+E A   L+  R+ IV  +A FDE+A 
Sbjct:    56 DEVHCLHLLVKHKGSRRPSSWR--EANI--TRTKEEAQLLLEVYRNKIVQQEATFDELAR 111

Query:    65 RLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
               SDCSSAKRGGDLG FGRGQMQ  FE+A + L + ++S +VD+DSG+H+I+R
Sbjct:   112 SYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP

UNIPROTKB|G4N0C2 MGG_07389 "Peptidyl-prolyl cis-trans isomerase ssp-1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 63/114 (55%), Positives = 81/114 (71%)

Query:     4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
             A Q+RA+H+LIKH+ SRR +SWK+     I+ T +E A   ++A +D I SG+A    +A
Sbjct:    67 AGQIRAAHLLIKHRDSRRPSSWKEEN---ITRT-KEDARRIIEAHKDRIASGEASLAALA 122

Query:    64 SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
             +  SDCSSA++ GDLG FGRG MQK FEEA + LK GEIS VVDT SG+HLI R
Sbjct:   123 TTESDCSSARKRGDLGFFGRGDMQKEFEEAAFALKPGEISGVVDTASGLHLIER 176

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5BIN5 PIN1 "Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/113 (50%), Positives = 79/113 (69%)

Query:     6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
             +VR SH+L+KH  SRR +SW+  +   I+ T +E A+  +      I SG+  F+ +AS+
Sbjct:    54 RVRCSHLLVKHSQSRRPSSWRQEK---ITRT-KEEALELINGYIQKIKSGEEDFESLASQ 109

Query:    66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
              SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

GO:0042127 "regulation of cell proliferation" evidence=ISS

GO:0016607 "nuclear speck" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:2000146 "negative regulation of cell motility" evidence=IEA

GO:0070373 "negative regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0051443 "positive regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0050816 "phosphothreonine binding" evidence=IEA

GO:0050815 "phosphoserine binding" evidence=IEA

GO:0032794 "GTPase activating protein binding" evidence=IEA

GO:0032465 "regulation of cytokinesis" evidence=IEA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1P6C1 PIN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/113 (50%), Positives = 79/113 (69%)

Query:     6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
             +VR SH+L+KH  SRR +SW+  +   I+ T +E A+  +      I SG+  F+ +AS+
Sbjct:    54 RVRCSHLLVKHSQSRRPSSWRQEK---ITRT-KEEALELINGYIQKIKSGEEDFESLASQ 109

Query:    66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
              SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|Q13526 PIN1 "Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/113 (50%), Positives = 79/113 (69%)

Query:     6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
             +VR SH+L+KH  SRR +SW+  +   I+ T +E A+  +      I SG+  F+ +AS+
Sbjct:    54 RVRCSHLLVKHSQSRRPSSWRQEK---ITRT-KEEALELINGYIQKIKSGEEDFESLASQ 109

Query:    66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
              SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

GO:0006457 "protein folding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0001934 "positive regulation of protein phosphorylation" evidence=IGI

GO:0030496 "midbody" evidence=IDA

GO:0032465 "regulation of cytokinesis" evidence=IGI;IMP

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0051443 "positive regulation of ubiquitin-protein ligase activity" evidence=IDA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0050815 "phosphoserine binding" evidence=IDA

GO:0050816 "phosphothreonine binding" evidence=IDA;IPI

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0070373 "negative regulation of ERK1 and ERK2 cascade" evidence=IDA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IMP

GO:2000146 "negative regulation of cell motility" evidence=IDA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEK8	PIN1_DIGLA	5, ., 2, ., 1, ., 8	0.7264	0.9831	0.9915	N/A	no
Q94G00	PIN1_MALDO	5, ., 2, ., 1, ., 8	0.8050	0.9915	0.9752	N/A	no
Q9SL42	PIN1_ARATH	5, ., 2, ., 1, ., 8	0.7815	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
PTZ00356	115	PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isom	2e-47
pfam00639	94	pfam00639, Rotamase, PPIC-type PPIASE domain	3e-30
pfam13616	114	pfam13616, Rotamase_3, PPIC-type PPIASE domain	8e-18
PRK03095	287	PRK03095, prsA, peptidylprolyl isomerase; Reviewed	7e-12
TIGR02933	256	TIGR02933, nifM_nitrog, nitrogen fixation protein	8e-12
PRK03002	285	PRK03002, prsA, peptidylprolyl isomerase; Reviewed	2e-11
COG0760	320	COG0760, SurA, Parvulin-like peptidyl-prolyl isome	1e-10
PRK10770	413	PRK10770, PRK10770, peptidyl-prolyl cis-trans isom	3e-10
PRK02998	283	PRK02998, prsA, peptidylprolyl isomerase; Reviewed	4e-09
PRK15441	93	PRK15441, PRK15441, peptidyl-prolyl cis-trans isom	1e-07
PRK00059	336	PRK00059, prsA, peptidylprolyl isomerase; Provisio	2e-07

>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

 Score =  147 bits (373), Expect = 2e-47
 Identities = 63/116 (54%), Positives = 80/116 (68%), Gaps = 7/116 (6%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTR--ESAVSQLQAIRDDIVSGKAKFDEVA 63
            VRA+H+LIKH GSR   S      R     TR  E A+ +L   R+ IVSG+  F+E+A
Sbjct: 5   TVRAAHLLIKHTGSRNPVSR-----RTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIA 59

Query: 64  SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
            + SDC SA +GGDLG FGRGQMQKPFE+A + LK+GEIS++V TDSGVH+I+R  
Sbjct: 60  RQRSDCGSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHIILRLA 115

Length = 115

>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain

 Score =  103 bits (259), Expect = 3e-30
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 17/110 (15%)

Query: 11  HILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS-DC 69
           HILIK   S                  R +A ++ + I + + SG+  F E+A   S DC
Sbjct: 1   HILIKPPESA----------------DRAAAKAKAEEILEQLQSGEDTFAELAREYSDDC 44

Query: 70  SSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
            SA  GGDLG F RGQ+   FE+A ++LK GEIS  V+T  G H+I  T 
Sbjct: 45  PSAANGGDLGWFTRGQLPPEFEDAAFSLKEGEISGPVETPFGYHIIKVTD 94

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 94

>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain

 Score = 72.3 bits (178), Expect = 8e-18
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 20/116 (17%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
            + + V+  HIL+ + G++RKA              +  A S   A++     G A F  
Sbjct: 11  QAPDSVKVRHILVAYAGAQRKAE------------AKALADSIYNALK-----GGADFAA 53

Query: 62  VASRLS-DCSSAKRGGDLGNFG-RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           +A + S D  S  +GGDLG F   GQM K F +A + LK+GEI  VV+T  G H+I
Sbjct: 54  LAKKYSDDPGSKAQGGDLGWFTASGQMVKEFIDALFTLKVGEIG-VVETPFGYHII 108

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 114

>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed

 Score = 60.0 bits (145), Expect = 7e-12
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 27/114 (23%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +++ASHIL+K + + +K                         +++++  GK+ F+E+A +
Sbjct: 132 EIKASHILVKDEATAKK-------------------------VKEELGQGKS-FEELAKQ 165

Query: 66  LS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            S D  S ++GGDLG FG G+M K FE+A Y LK  E+SE V +  G H+I  T
Sbjct: 166 YSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVT 219

Length = 287

>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM

 Score = 59.5 bits (144), Expect = 8e-12
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 20  RRKASWKDPEGRV-------ISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSA 72
           R    +K PE R+       ++   RE+  +++ AI   +    A F E A R S C +A
Sbjct: 113 RHAEQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTA 172

Query: 73  KRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIM 116
             GG LG   RG +    + A + L  GE+S  ++++ G HL++
Sbjct: 173 MEGGLLGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLL 216

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase [Central intermediary metabolism, Nitrogen fixation]. Length = 256

>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 57  AKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           A F+E+A + S D  S ++GGDLG F  G+M   FE A Y LK+G+IS  V + +G H+I
Sbjct: 161 ASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKSPNGYHII 220

Query: 116 MRTG 119
             T 
Sbjct: 221 KLTD 224

Length = 285

>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 5   NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVAS 64
            +V+A HIL+K                         A   L  ++  +   KA F E+A 
Sbjct: 167 TEVQARHILVK---------------------AEAKAKEALALLKKGVREAKADFAELAK 205

Query: 65  RLSDCSSAKRGGDLGNFG-RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           + S+  S+K GG L  +  +GQ+   F +A + LK+GE+S  V T  G H+I    
Sbjct: 206 KQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEK 261

Length = 320

>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 41/115 (35%), Positives = 52/115 (45%), Gaps = 19/115 (16%)

Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
           S  +V A HIL+K                 I   T E A ++L+ I  DI SGK  F   
Sbjct: 263 SVTEVHARHILLKPS--------------PI--MTDEQARAKLEQIAADIKSGKTTFAAA 306

Query: 63  ASRLS-DCSSAKRGGDLGNFGRGQMQKP-FEEATYNLKIGEISEVVDTDSGVHLI 115
           A   S D  SA +GGDLG +    +  P F +A   L  G+IS  V +  G HLI
Sbjct: 307 AKEFSQDPGSANQGGDLG-WATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLI 360

Length = 413

>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 48  IRDDIVSGKAKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVV 106
           +++ + +G+  F  +A + S D  S ++GG++  F  GQ  K FEEA Y L  G++SE V
Sbjct: 151 VKEKVNNGE-DFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPV 209

Query: 107 DTDSGVHLIMRTG 119
            T  G H+I  T 
Sbjct: 210 KTTYGYHIIKVTD 222

Length = 283

>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 57  AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           A F ++A + S C S KRGGDLG F +GQM   F++  ++  + E +  + T  G H+I
Sbjct: 29  ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 87

Length = 93

>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 29/117 (24%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
              N +  +HIL+K                     T + A    + ++  +  G   F +
Sbjct: 192 EKPNTMHLAHILVK---------------------TEDEA----KKVKKRLDKG-EDFAK 225

Query: 62  VASRLS-DCSSAKRGGDLG--NFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           VA  +S D  S  +GGDLG   +      K F +    LK GEIS  V T  G H+I
Sbjct: 226 VAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHII 282

Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	99.96
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	99.96
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	99.95
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	99.93
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	99.93
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	99.92
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.91
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.88
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	99.87
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	99.86
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	99.85
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	99.85
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	99.82
PRK10788	623	periplasmic folding chaperone; Provisional	99.79
PRK01326	310	prsA foldase protein PrsA; Reviewed	99.79
TIGR02925	232	cis_trans_EpsD peptidyl-prolyl cis-trans isomerase	99.78
KOG3258	133	consensus Parvulin-like peptidyl-prolyl cis-trans	99.75
PRK12450	309	foldase protein PrsA; Reviewed	99.75
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	99.51
PF13145	121	Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2	99.01
PRK10788	623	periplasmic folding chaperone; Provisional	95.02

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=99.96  E-value=7.9e-29  Score=164.85  Aligned_cols=102  Identities=39%  Similarity=0.612  Sum_probs=83.4

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNF   81 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~   81 (119)
                      .|++++++||+|+.+..              +..+.++|+++|++|+++|++| ++|++||++||+++ ++.+||++||+
T Consensus        12 ~~~~v~~~~I~i~~~~~--------------~~~~~~~ak~~a~~i~~~l~~G-~dF~~lA~~yS~D~~s~~~gG~lgw~   76 (117)
T PF13616_consen   12 APDEVKVSHILIPVPDA--------------SSRSKEEAKKKADSILKQLKSG-ADFAELAKKYSQDPSSAENGGDLGWM   76 (117)
T ss_dssp             E--EEEEEEEEESS-------------------------HHHHHHHHHHHHCT-CCHHHHHHHHTSSCGTGGGTTEEEEE
T ss_pred             CcCeEEEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCCcccccCCccccc
Confidence            46799999999998541              1456788899999999999987 79999999999864 59999999999


Q ss_pred             c-CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 G-RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~-~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      . .++|+++|.+++++|++|++|.||++++|||||+|++
T Consensus        77 ~~~~~~~~~f~~~~~~l~~G~is~~v~s~~G~hIikv~d  115 (117)
T PF13616_consen   77 SEPSQLPPEFEEAAFSLKVGEISGPVESPNGYHIIKVTD  115 (117)
T ss_dssp             ETTTSSSCHHHHHHHHS-TTECTCEEEETTEEEEEEEEE
T ss_pred             cCCccccHHHHHHHHcCCCCCCCCeEEECCEEEEEEEEe
Confidence            9 9999999999999999999999999999999999975

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=99.96  E-value=3.9e-28  Score=161.23  Aligned_cols=114  Identities=53%  Similarity=0.895  Sum_probs=99.4

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG   82 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~   82 (119)
                      .|++++++||||++.+..+++..+.++..   ......++++++.|+++|+.|+.+|+++|++||+++++.+||++||+.
T Consensus         2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~   78 (115)
T PTZ00356          2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPV---TRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFG   78 (115)
T ss_pred             CCcEEEEEEEEEecCCCcCcccccccccc---cccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEc
Confidence            58999999999999876555444332211   367889999999999999998559999999999988888999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ..+|+|+|.++++.|++|++|+||++++|||||+++.
T Consensus        79 ~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~~  115 (115)
T PTZ00356         79 RGQMQKPFEDAAFALKVGEISDIVHTDSGVHIILRLA  115 (115)
T ss_pred             ccccCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEcC
Confidence            9999999999999999999999999999999999973

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=99.95  E-value=6.8e-27  Score=150.17  Aligned_cols=94  Identities=38%  Similarity=0.644  Sum_probs=87.1

Q ss_pred             eEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhC-CccccccCCccccccCCCCcHH
Q 033441           11 HILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKP   89 (119)
Q Consensus        11 ~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S-~~~~~~~gG~~g~~~~~~l~~~   89 (119)
                      ||||+.+..               ..+.++++++|++|+.+|+.|..+|+++|++|| +.+++.+||++||+..++|+++
T Consensus         1 HIl~~~~~~---------------~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~   65 (95)
T PF00639_consen    1 HILVKPPPS---------------DEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPE   65 (95)
T ss_dssp             EEEEESTTS---------------CCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHH
T ss_pred             CEEEECCCc---------------hhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHH
Confidence            899998651               578899999999999999999645999999999 5889999999999999999999


Q ss_pred             HHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           90 FEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        90 ~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      |.+++++|++|++|.||++++|||||+|.|
T Consensus        66 ~~~~~~~l~~Gevs~pi~t~~G~~Ii~v~d   95 (95)
T PF00639_consen   66 FEKALFALKPGEVSKPIETDNGYHIIKVED   95 (95)
T ss_dssp             HHHHHHTSTTTSBEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHhCCCCCcCCCEEECCEEEEEEEEC
Confidence            999999999999999999999999999975

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=99.93  E-value=7.9e-26  Score=168.10  Aligned_cols=102  Identities=28%  Similarity=0.459  Sum_probs=91.9

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |..|+.++++||+|+.++                 ...+.++++|+.|+++|++|+.+|++||++||+++++.+||++||
T Consensus       118 ~~~~e~~~~~hIli~~~~-----------------~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGdlG~  180 (256)
T TIGR02933       118 FKRPEQRLTRHLLLTVNE-----------------DDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGW  180 (256)
T ss_pred             cCCCCeEEEEEEEEECCc-----------------ccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCccCC
Confidence            456788899999999742                 234667889999999999875689999999999888899999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +..++|||+|.+++++|++|++|+||++++|||||+|.+
T Consensus       181 ~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~  219 (256)
T TIGR02933       181 VSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEA  219 (256)
T ss_pred             cCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEee
Confidence            999999999999999999999999999999999999974

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=99.93  E-value=1.1e-25  Score=144.25  Aligned_cols=89  Identities=34%  Similarity=0.527  Sum_probs=82.4

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG   84 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~   84 (119)
                      .++.++||++..                         +++|+.|+++|+.| ++|+++|++||+++++..||++||+..+
T Consensus         3 ~~~~~~~I~~~~-------------------------~~~A~~i~~~l~~g-~~F~~la~~~S~~~~~~~gG~lg~~~~~   56 (93)
T PRK15441          3 KTAAALHILVKE-------------------------EKLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQG   56 (93)
T ss_pred             CceEEEEEEECC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCchhhcCccceeeccc
Confidence            578999999974                         36788999999988 7999999999997777789999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +||++|.++++.|++|++|+||++++|||||+|++
T Consensus        57 ~l~~~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv~~   91 (93)
T PRK15441         57 QMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY   91 (93)
T ss_pred             ccCHHHHHHHHhCCCCCcCCcEEcCCEEEEEEEEe
Confidence            99999999999999999999999999999999986

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.2e-25  Score=150.22  Aligned_cols=112  Identities=56%  Similarity=0.991  Sum_probs=105.1

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG   82 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~   82 (119)
                      .|+++++.||||++..+..+++|....  +  ..+.++|...++.+.+.|++|..+|.+||+++|+|.++..|||||||.
T Consensus        51 ~p~~Vr~sHlLVKH~~SRrpsSwr~~~--i--t~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fg  126 (163)
T KOG3259|consen   51 EPARVRCSHLLVKHKGSRRPSSWRSEN--I--TRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFG  126 (163)
T ss_pred             CccceeEEEEEEccccCCCCccccccc--c--hhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccc
Confidence            478999999999999999999997543  2  678899999999999999999889999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEe
Q 033441           83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT  118 (119)
Q Consensus        83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~  118 (119)
                      +++|-+.|+++.|+|++|++|+||.|+.|+|||+-.
T Consensus       127 rgqMqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R~  162 (163)
T KOG3259|consen  127 RGQMQKPFEDAAFALKVGEMSGIVDTDSGVHIIYRT  162 (163)
T ss_pred             cccccccchhhhhhcccccccCceecCCceEEEEec
Confidence            999999999999999999999999999999999864

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.91  E-value=3.5e-24  Score=167.82  Aligned_cols=104  Identities=25%  Similarity=0.342  Sum_probs=94.4

Q ss_pred             CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441            2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF   81 (119)
Q Consensus         2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~   81 (119)
                      ..+++++++||+|+.+..++             .....+++.+|+.|+.+|++| ++|+++|+.||+++++.+||++||+
T Consensus       151 ~~~~~~~~~~I~i~~~~~~s-------------~~~~~~~~~~a~~l~~~l~~g-~~F~~lA~~yS~~~~a~~gGdlg~~  216 (413)
T PRK10770        151 DASTELNLSHILIPLPENPT-------------QDQVDEAESQARSIVDQARNG-ADFGKLAIAYSADQQALKGGQMGWG  216 (413)
T ss_pred             cccceEEEEEEEEeCCCCCC-------------HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcccccCCcCCcc
Confidence            45789999999999764321             456778889999999999998 7999999999998889999999999


Q ss_pred             cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ..++|||+|.+++++|++|++|+||+++.|||||+|.+
T Consensus       217 ~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~  254 (413)
T PRK10770        217 RIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVND  254 (413)
T ss_pred             ccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEee
Confidence            99999999999999999999999999999999999974

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.88  E-value=1.2e-22  Score=159.15  Aligned_cols=100  Identities=37%  Similarity=0.475  Sum_probs=89.2

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCcccccc
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFG   82 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~   82 (119)
                      .++++++||+|++.+                ....+.|++++++|+.+|..|..+|+++|++||++ .++.+||++||+.
T Consensus       264 ~~e~~~~hIli~~~~----------------~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~~~  327 (413)
T PRK10770        264 VTEVHARHILLKPSP----------------IMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAT  327 (413)
T ss_pred             HHhhhhhheEECCCC----------------CCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCccC
Confidence            457999999999753                22346788999999999998855999999999985 5788999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .+.|+|+|..++++|++|++|.||.+++|||||+|++
T Consensus       328 ~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~  364 (413)
T PRK10770        328 PDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLD  364 (413)
T ss_pred             ccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEee
Confidence            9999999999999999999999999999999999985

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=99.87  E-value=9.1e-22  Score=149.25  Aligned_cols=90  Identities=26%  Similarity=0.454  Sum_probs=78.9

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCcccccc
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFG   82 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~   82 (119)
                      +++++++||+|+.                         ++.|+.++++|++| ++|++||++||.+ .++.+||++||+.
T Consensus       142 ~~~~~v~hIlv~~-------------------------~~~A~~v~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~  195 (298)
T PRK04405        142 QPKVTVQHILVSK-------------------------KSTAETVIKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFD  195 (298)
T ss_pred             hhhEEEEEEEecC-------------------------hHHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccc
Confidence            3579999999984                         24577899999998 7999999999985 5677999999885


Q ss_pred             C--CCCcHHHHHHHhcCCCCCcc-ceeEcCCeEEEEEEeC
Q 033441           83 R--GQMQKPFEEATYNLKIGEIS-EVVDTDSGVHLIMRTG  119 (119)
Q Consensus        83 ~--~~l~~~~~~av~~l~~G~is-~pi~s~~G~hIv~v~~  119 (119)
                      .  ++|+|+|.+++++|++|+++ +||++++|||||+|++
T Consensus       196 ~~~~~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~  235 (298)
T PRK04405        196 STDTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIK  235 (298)
T ss_pred             cCCCCCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEee
Confidence            4  68999999999999999995 8999999999999974

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=99.86  E-value=2.3e-21  Score=146.02  Aligned_cols=89  Identities=35%  Similarity=0.637  Sum_probs=80.6

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCccccccC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFGR   83 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~~   83 (119)
                      ++++++||+|+..                         +.|+.++++|++| ++|+++|+.||.+ .++.+||++||+..
T Consensus       133 ~~~~v~~Ilv~~e-------------------------~~A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gG~lg~~~~  186 (283)
T PRK02998        133 PEMKVSHILVKDE-------------------------KTAKEVKEKVNNG-EDFAALAKQYSEDTGSKEQGGEISGFAP  186 (283)
T ss_pred             cceEEEEEEeCCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCCCcCC
Confidence            3689999999842                         4577899999988 7999999999985 46789999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ++++|+|.+++++|++|++|+||++++|||||+|++
T Consensus       187 ~~l~~~~~~a~~~Lk~GevS~pi~t~~G~hIikv~~  222 (283)
T PRK02998        187 GQTVKEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTD  222 (283)
T ss_pred             CcchHHHHHHHHcCCCCCcCCceEECCEEEEEEEec
Confidence            999999999999999999999999999999999985

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=99.85  E-value=3.2e-21  Score=145.39  Aligned_cols=89  Identities=39%  Similarity=0.694  Sum_probs=80.7

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccccC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNFGR   83 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~~~   83 (119)
                      ++++++||+|+.+                         +.|+.++.+|++| .+|+++|++||.++ ++.+||++||+..
T Consensus       135 ~~~~~~~Ilv~~~-------------------------~~A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gGdlg~~~~  188 (285)
T PRK03002        135 PEIKASHILVSDE-------------------------NEAKEIKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNS  188 (285)
T ss_pred             cceEEEEEEECCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccceecc
Confidence            4689999999842                         4567889999988 79999999999964 6789999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ++|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus       189 ~~l~p~~~~a~~~L~~GevS~pI~t~~G~hIikv~~  224 (285)
T PRK03002        189 GRMAPEFETAAYKLKVGQISNPVKSPNGYHIIKLTD  224 (285)
T ss_pred             ccCCHHHHHHHHcCCCCCcCCcEEECCEEEEEEEee
Confidence            999999999999999999999999999999999975

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=99.85  E-value=4.6e-21  Score=144.64  Aligned_cols=89  Identities=40%  Similarity=0.725  Sum_probs=80.3

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccccC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNFGR   83 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~~~   83 (119)
                      ++++++||+|+..                         ..|..++.+|+.| .+|+++|++||.++ ++.+||++||+..
T Consensus       131 ~~v~~~hIlv~~~-------------------------~~A~~i~~~l~~G-~~F~~lA~~yS~d~~s~~~gG~lg~~~~  184 (287)
T PRK03095        131 PEIKASHILVKDE-------------------------ATAKKVKEELGQG-KSFEELAKQYSEDTGSKEKGGDLGFFGA  184 (287)
T ss_pred             ccEEEEEEEeCCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCccccccCCcCceecc
Confidence            3599999999842                         3567888999988 69999999999964 6788999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ++|||.|.+++++|++|++|+||++++|||||+|++
T Consensus       185 ~~L~~~~~~al~~L~~GevS~pi~t~~G~hIikv~~  220 (287)
T PRK03095        185 GKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTD  220 (287)
T ss_pred             ccccHHHHHHHHhCCCCCcCCceEECCEEEEEEEee
Confidence            999999999999999999999999999999999985

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=99.82  E-value=1.1e-19  Score=139.13  Aligned_cols=91  Identities=32%  Similarity=0.511  Sum_probs=82.6

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNF   81 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~   81 (119)
                      .|++++++||+++.+                         +.|+++++++++| .+|+++|++||.+ .++.+||++||+
T Consensus       193 ~p~~~~v~~I~~~~~-------------------------~~a~~~~~~l~~g-~~F~~la~~~s~~~~~~~~~g~lg~~  246 (336)
T PRK00059        193 KPNTMHLAHILVKTE-------------------------DEAKKVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDV  246 (336)
T ss_pred             CcceEEEEEEEecCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccccc
Confidence            588999999999842                         4678889999998 6999999999985 677899999999


Q ss_pred             cC--CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GR--GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~--~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ..  +.++|+|.+++++|++|++|+||.+++||||++|++
T Consensus       247 ~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~  286 (336)
T PRK00059        247 PYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIK  286 (336)
T ss_pred             ccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEe
Confidence            98  789999999999999999999999999999999974

>PRK10788 periplasmic folding chaperone; Provisional

Probab=99.79  E-value=4.6e-19  Score=145.29  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=88.2

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHH-----------------------HHHHHHHHHHHHHHhChh
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRE-----------------------SAVSQLQAIRDDIVSGKA   57 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~a~~~a~~l~~~l~~g~~   57 (119)
                      |.+|++++++||+|+.....        +...+++.+..                       .+++.|+.++.+|++| +
T Consensus       225 f~~pe~~~i~yi~l~~~~~~--------~~~~vt~~ei~~~y~~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G-~  295 (623)
T PRK10788        225 FMAPEQFKVSYIKLDAATMQ--------QKITVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKG-A  295 (623)
T ss_pred             cCCcceEEEEEEEechhhhc--------CCCCCCHHHHHHHHHHHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCC-C
Confidence            67899999999999865321        11111122211                       1345789999999998 7


Q ss_pred             hHHHHHHHhCCc-cccccCCccccccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           58 KFDEVASRLSDC-SSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        58 ~F~~la~~~S~~-~~~~~gG~~g~~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +|+++|++||++ .++.+||++||+.++.|+++|.++++ +++|++|+||++++|||||+|++
T Consensus       296 ~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs~pv~t~~G~~Iikv~~  357 (623)
T PRK10788        296 DFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDD  357 (623)
T ss_pred             CHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcCCcEEECCeEEEEEEEe
Confidence            999999999985 58899999999999999999999988 68899999999999999999974

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=99.79  E-value=1.9e-19  Score=137.11  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHh-ChhhHHHHHHHhCCccccccCCccccccC-CCCcHHHHHHHhcCCCCCccceeEc------CCeEEE
Q 033441           43 SQLQAIRDDIVS-GKAKFDEVASRLSDCSSAKRGGDLGNFGR-GQMQKPFEEATYNLKIGEISEVVDT------DSGVHL  114 (119)
Q Consensus        43 ~~a~~l~~~l~~-g~~~F~~la~~~S~~~~~~~gG~~g~~~~-~~l~~~~~~av~~l~~G~is~pi~s------~~G~hI  114 (119)
                      +.|+.++.+|++ | ++|++||++||.  ++.+||++||+.. .+||++|.+++|+|++|++|+||++      .+||||
T Consensus       157 ~~A~~i~~~l~~~G-~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~t~~~~~~~~GyhI  233 (310)
T PRK01326        157 DKAKSVLEEAKAEG-ADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVISVLDPTAYQSKYYI  233 (310)
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCceecCCCCcCCceEEE
Confidence            567889999984 7 799999999999  5678999999987 5799999999999999999999987      679999


Q ss_pred             EEEeC
Q 033441          115 IMRTG  119 (119)
Q Consensus       115 v~v~~  119 (119)
                      |+|.+
T Consensus       234 ikv~~  238 (310)
T PRK01326        234 VKVTK  238 (310)
T ss_pred             EEEec
Confidence            99974

>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family

Probab=99.78  E-value=1.1e-18  Score=127.52  Aligned_cols=92  Identities=13%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |..+++|+++||+|+.+                        ...++.+++.+++| .+|+++++.++..+. ..+|.+||
T Consensus       133 f~~~~~~~~~hIlv~~~------------------------~~~a~~~~~~l~~g-~~f~~la~~~~~~~~-~~~~~~~~  186 (232)
T TIGR02925       133 FAERKLYNLQEIALPPD------------------------MELLDELRAMVENG-KPLEDILAWLKAKNV-PFNASSAA  186 (232)
T ss_pred             cCCCceEEEEEEEecCC------------------------hhHHHHHHHHHhcC-CCHHHHHHHhhhcCc-cccccccc
Confidence            56789999999999842                        13567888899998 699999999886433 45678999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +..++|||+|.+++++|++|+|+ ||++++||||++|.+
T Consensus       187 ~~~~~l~~~~~~a~~~l~~G~is-~v~s~~G~hiikv~~  224 (232)
T TIGR02925       187 RPAEQLPAEILAVLAKLKPGAPL-VVQGPNNVLILVLAD  224 (232)
T ss_pred             CchhhCCHHHHHHHHhCCCCCeE-EeecCCceEEEEEec
Confidence            99999999999999999999999 899999999999975

Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.

>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=5.7e-18  Score=110.01  Aligned_cols=88  Identities=36%  Similarity=0.622  Sum_probs=76.7

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR   83 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~   83 (119)
                      ..-+.+||||-.-.                         -++.+.++.|++| ..|.++|.+||++. +.+||||||+++
T Consensus        37 gtaVKvRHiLCEKq-------------------------GKi~EA~eKLk~G-~~F~evAA~YSEdk-ar~GGDLGW~~R   89 (133)
T KOG3258|consen   37 GTAVKVRHILCEKQ-------------------------GKINEAMEKLKSG-MKFNEVAAQYSEDK-ARQGGDLGWMTR   89 (133)
T ss_pred             cceEEEEEeeehhh-------------------------chHHHHHHHHHcc-cchHHHHHHhccCc-cccCCcccceec
Confidence            35688999998753                         2567778889998 79999999999987 788999999999


Q ss_pred             CCCcHHHHHHHhcCCCC------CccceeEcCCeEEEEEEe
Q 033441           84 GQMQKPFEEATYNLKIG------EISEVVDTDSGVHLIMRT  118 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G------~is~pi~s~~G~hIv~v~  118 (119)
                      +.|.-.|.+++|+|+++      -.++||++.+|||||+|.
T Consensus        90 G~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvE  130 (133)
T KOG3258|consen   90 GSMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVE  130 (133)
T ss_pred             cccccchhhhhhcccccccCCccccCCCcccccceEEEEec
Confidence            99988899999999998      566788999999999985

>PRK12450 foldase protein PrsA; Reviewed

Probab=99.75  E-value=7.2e-18  Score=128.49  Aligned_cols=87  Identities=17%  Similarity=0.172  Sum_probs=72.9

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHh-ChhhHHHHHHHhCCccccccCCccccccC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVS-GKAKFDEVASRLSDCSSAKRGGDLGNFGR   83 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~-g~~~F~~la~~~S~~~~~~~gG~~g~~~~   83 (119)
                      ++++++||++..                         ++.|+.++++|++ | ++|++||++||.++  ..||++||...
T Consensus       147 ~~~~~~~I~~~~-------------------------~~~A~~i~~~l~~~G-~dF~~lAk~~S~~~--~~~g~~~f~~~  198 (309)
T PRK12450        147 PTMTAEIMQFEK-------------------------EEDAKAALEAVKAEG-ADFAAIAKEKTIAA--DKKTTYTFDSG  198 (309)
T ss_pred             ccceeEEEEeCC-------------------------HHHHHHHHHHHHhcC-CCHHHHHHHhCCCc--ccCCcccccCC
Confidence            468899988753                         3567888889985 6 79999999999864  46889998764


Q ss_pred             -CCCcHHHHHHHhcCCCCCccc------eeEcCCeEEEEEEeC
Q 033441           84 -GQMQKPFEEATYNLKIGEISE------VVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 -~~l~~~~~~av~~l~~G~is~------pi~s~~G~hIv~v~~  119 (119)
                       ++|+|+|.+++++|++|++|+      ||++++|||||+|++
T Consensus       199 ~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~  241 (309)
T PRK12450        199 ETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTK  241 (309)
T ss_pred             CCCCCHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEec
Confidence             579999999999999999998      457899999999975

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2.7e-15  Score=110.90  Aligned_cols=91  Identities=35%  Similarity=0.508  Sum_probs=74.3

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhCh----hhHHHHHHHhCCccccc-cCCcc
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGK----AKFDEVASRLSDCSSAK-RGGDL   78 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~----~~F~~la~~~S~~~~~~-~gG~~   78 (119)
                      .++++.+||++...                         ..+.++...++.+.    .+|.++|++||.++... .||++
T Consensus       166 ~~~~~~~~i~~~~~-------------------------~~a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~  220 (320)
T COG0760         166 VTEVQARHILVKAE-------------------------AKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLL  220 (320)
T ss_pred             HHHHhhcccccCch-------------------------HhHHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccc
Confidence            46788999999864                         23344444444432    69999999999976665 47788


Q ss_pred             ccccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           79 GNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        79 g~~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ||...+.|+|+|.++++.+++|+++.||++.+||||++|++
T Consensus       221 ~~~~~~~~~p~f~~a~~~~~~g~~~~pv~t~~g~~ii~v~~  261 (320)
T COG0760         221 GWNKKGQLVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEK  261 (320)
T ss_pred             cccCccccChHHHHHHHhccCcccccccccchHHHHHHHHh
Confidence            88999999999999999999999999999999999999864

>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A

Probab=99.01  E-value=6.1e-10  Score=72.32  Aligned_cols=58  Identities=26%  Similarity=0.440  Sum_probs=44.3

Q ss_pred             hhHHHHHHHhCCccccccCCccccccCC-CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           57 AKFDEVASRLSDCSSAKRGGDLGNFGRG-QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        57 ~~F~~la~~~S~~~~~~~gG~~g~~~~~-~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .+|..+++.++...     .+.++.... .|+++|.++++.|+.|+||+||.+++|||||+|.+
T Consensus        49 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~s~~i~~~~~~~v~~v~~  107 (121)
T PF13145_consen   49 EDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEVSGPIESGNGYYVVKVKE  107 (121)
T ss_dssp             HHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-EEEEEEETTEEEEEEEEE
T ss_pred             chHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCeeeeEEECCEEEEEEEEe
Confidence            58888888766542     234565554 68899999999999999999999999999999963

>PRK10788 periplasmic folding chaperone; Provisional

Probab=95.02  E-value=0.13  Score=42.80  Aligned_cols=41  Identities=17%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             ccccCCCCcHHHHHHHhcCCCCCccceeEc-----CCeEEEEEEeC
Q 033441           79 GNFGRGQMQKPFEEATYNLKIGEISEVVDT-----DSGVHLIMRTG  119 (119)
Q Consensus        79 g~~~~~~l~~~~~~av~~l~~G~is~pi~s-----~~G~hIv~v~~  119 (119)
                      +++++..+++.+..++|+++.|.++.|+..     ..|+.|++|.+
T Consensus       532 ~~~~r~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  577 (623)
T PRK10788        532 KTLSRTSQDDPLSQAAFALPLPAKDKPSYGMAQDMQGNVVLIALDE  577 (623)
T ss_pred             cceecCCCChHHHHHHhcCCCCCCCCCeeEEEEcCCCCEEEEEEcc
Confidence            466665566779999999999888877654     57899999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
1j6y_A	139	Solution Structure Of Pin1at From Arabidopsis Thali		4e-53
1yw5_A	177	Peptidyl-Prolyl Isomerase Ess1 From Candida Albican		9e-30
1nmw_A	114	Solution Structure Of The Ppiase Domain Of Human Pi		2e-26
2zqu_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		3e-26
3tcz_A	158	Human Pin1 Bound To Cis Peptidomimetic Inhibitor Le		3e-26
3ik8_A	123	Structure-Based Design Of Novel Pin1 Inhibitors (I)		3e-26
2zr4_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		3e-26
2zr6_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		3e-26
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		3e-26
3tc5_A	166	Selective Targeting Of Disease-Relevant Protein Bin		3e-26
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		3e-26
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		3e-26
3kac_A	123	Structure-Guided Design Of Alpha-Amino Acid-Derived		3e-26
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		3e-26
2itk_A	167	Human Pin1 Bound To D-Peptide Length = 167		3e-26
2f21_A	162	Human Pin1 Fip Mutant Length = 162		4e-26
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-25
3kad_A	167	Structure-Guided Design Of Alpha-Amino Acid-Derived		2e-25
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		2e-25
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		5e-25
2lj4_A	115	Solution Structure Of The Tbpin1 Length = 115		2e-23
2rqs_A	97	3d Structure Of Pin From The Psychrophilic Archeon		4e-15
2jzv_A	111	Solution Structure Of S. Aureus Prsa-Ppiase Length		6e-11
1zk6_A	93	Nmr Solution Structure Of B. Subtilis Prsa Ppiase L		5e-10
1jns_A	92	Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRA		4e-07
1eq3_A	96	Nmr Structure Of Human Parvulin Hpar14 Length = 96		9e-07
3ui4_A	101	0.8 A Resolution Crystal Structure Of Human Parvuli		1e-06
1fjd_A	104	Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMER		1e-06
3rfw_A	252	The Virulence Factor Peb4 And The Periplasmic Prote		3e-06
4g2p_A	110	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-05

>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana Length = 139

Iteration: 1
 Score =  202 bits (514), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 111/118 (94%)
Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 21  MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 80
Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
           EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct: 81  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 138

>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans Length = 177

Iteration: 1
 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 83/114 (72%), Gaps = 3/114 (2%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           QVR SH+LIK+  SR+  SWK P+G  IS T R+ ++  L+   + I+SG+ K  E+A+ 
Sbjct: 67  QVRVSHLLIKNNQSRKPKSWKSPDG--ISRT-RDESIQILKKHLERILSGEVKLSELANT 123
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
            SDCSS  RGGDLG F +GQMQ PFEEA +NL +GE+S +++T+SGVH++ RTG
Sbjct: 124 ESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177

>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1 Length = 114

Iteration: 1
 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 5   RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 60
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 61  FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 113

>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor Length = 158

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 49  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 104
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 105 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 157

>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I) Length = 123

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 14  RVRCSHLLVKHSQSRRPSSWRQEQ----ITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 70  FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122

>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding Domains By O- Phosphorylated Natural Product Derivatives Length = 166

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 57  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 112
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 113 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 165

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 58  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 113
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 114 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166

>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 123

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 14  RVRCSHLLVKHSQSRRPSSWRQEQ----ITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 70  FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 52  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 107
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 108 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 160

>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide Length = 167

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 58  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 113
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 114 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score =  113 bits (282), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 53  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 108
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 109 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 161

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+ H  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVAHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 167

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 58  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 113
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQM KPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 114 FSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQ QKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQAQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 54  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SD SSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 110 FSDASSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162

>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1 Length = 115

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 4   ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
           + ++RA+H+L+K  GSR   S +   G   ++ T E A+ +LQ     I SG+  F+E A
Sbjct: 2   SEKLRAAHLLVKFSGSRNPVSRR--TGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAA 59
Query: 64  SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
           S+ SDC S   GGDLG F  G+M KPFE+A   LKIG+IS +V TDSG+H+I R
Sbjct: 60  SQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKR 113

>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon Cenarcheaum Symbiosum (Cspin) Length = 97

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 27/119 (22%)
Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
           S A++++ SHIL+K QG                         +  A+++ + +G+ KF +
Sbjct: 5   SMADKIKCSHILVKKQG-------------------------EALAVQERLKAGE-KFGK 38
Query: 62  VASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           +A  LS D  SAKR G LG FGRG+M KPFE+A + L++GE+SE V ++ G H+I R G
Sbjct: 39  LAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97

>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase Length = 111

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 8   RASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS 67
           +ASHILIK      K+   D EG        + A  + + I+ ++    +KF E+A + S
Sbjct: 9   KASHILIK-----VKSKKSDKEG-----LDDKEAKQKAEEIQKEVSKDPSKFGEIAKKES 58
Query: 68  -DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
            D  SAK+ G+LG   +GQ  K FE+A + LK GE+SEVV +  G H+I
Sbjct: 59  MDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHII 107

>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 58  KFDEVASRLSDCSSAKRGGDLGNFGR-GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIM 116
           KF+++A   S  SSA +GGDLG F + GQM + F +A + LK GE+S+ V T  G H+I 
Sbjct: 30  KFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIK 89
Query: 117 RT 118
           +T
Sbjct: 90  KT 91

>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS- Isomerase Parvulin 10 Length = 92

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 57  AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           A F ++A + S C S KRGGDLG F +GQM   F++  ++  + E +  + T  G H+I
Sbjct: 28  ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 86

>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14 Length = 96

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 58  KFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDS------G 111
           +F+EVA++ S+   A++GGDLG   RG M  PF+EA + L +  + + V TD       G
Sbjct: 28  RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFG 86
Query: 112 VHLIMRTG 119
            H+IM  G
Sbjct: 87  YHIIMVEG 94

>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14 Length = 101

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 58  KFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDS------G 111
           +F+EVA++ S+   A++GGDLG   RG M  PF+EA + L +  + + V TD       G
Sbjct: 33  RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFG 91
Query: 112 VHLIMRTG 119
            H+IM  G
Sbjct: 92  YHIIMVEG 99

>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 58  KFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDS------G 111
           +F+EVA++ S+   A++GGDLG   RG M  PF+EA + L +  + + V TD       G
Sbjct: 36  RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFG 94
Query: 112 VHLIMRTG 119
            H+IM  G
Sbjct: 95  YHIIMVEG 102

>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 57  AKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEV-VDTDSGVHL 114
           AKF E+A   S D  S  +GG+LG F +  M KPF +A + LK G I+   V T+ G H+
Sbjct: 143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHV 202
Query: 115 IMR 117
           I++
Sbjct: 203 ILK 205

>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Domain Ii Of Molecular Chaperone Sura From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
           S  +V A HIL+K                 I N   + A  +L+ I  DI SGK  F   
Sbjct: 5   SVTEVHARHILLK--------------PSPIXND--QQARLKLEEIAADIKSGKTTFAAA 48
Query: 63  ASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           A   S D  SA +GGDLG          F +A   L  G+IS  V +  G HLI
Sbjct: 49  AKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	5e-56
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	3e-52
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	7e-51
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	2e-49
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	1e-42
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	3e-31
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	7e-30
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	1e-28
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	3e-27
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	4e-27
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	1e-26
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	8e-24
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	2e-22
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	2e-21
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	2e-19
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	3e-17
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	8e-14
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	5e-07

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139

 Score =  169 bits (430), Expect = 5e-56
 Identities = 93/119 (78%), Positives = 111/119 (93%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 21  MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 80

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT 
Sbjct: 81  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 139

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score =  161 bits (409), Expect = 3e-52
 Identities = 58/119 (48%), Positives = 84/119 (70%), Gaps = 3/119 (2%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           ++   QVR SH+LIK+  SR+  SWK P+G    + TR+ ++  L+   + I+SG+ K  
Sbjct: 62  VNEDGQVRVSHLLIKNNQSRKPKSWKSPDG---ISRTRDESIQILKKHLERILSGEVKLS 118

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           E+A+  SDCSS  RGGDLG F +GQMQ PFEEA +NL +GE+S +++T+SGVH++ RTG
Sbjct: 119 ELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123

 Score =  155 bits (395), Expect = 7e-51
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 14  RVRCSHLLVKHSQSRRPSSWRQEQ----ITRTQEEALELINGYIQKIKSGEEDFESLASQ 69

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 70  FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score =  154 bits (390), Expect = 2e-49
 Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 4/118 (3%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
                +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+
Sbjct: 52  QGEPARVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFE 107

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 108 SLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 165

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111

 Score =  134 bits (340), Expect = 1e-42
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 11/114 (9%)

Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
            ++  +ASHILIK +  +                  + A  + + I+ ++    +KF E+
Sbjct: 4   GSDSKKASHILIKVKSKKSDKEGL----------DDKEAKQKAEEIQKEVSKDPSKFGEI 53

Query: 63  ASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           A + S D  SAK+ G+LG   +GQ  K FE+A + LK GE+SEVV +  G H+I
Sbjct: 54  AKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHII 107

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} Length = 97

 Score =  105 bits (265), Expect = 3e-31
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 27/119 (22%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
           S A++++ SHIL+K                      +  A     A+++ + +G  KF +
Sbjct: 5   SMADKIKCSHILVK---------------------KQGEA----LAVQERLKAG-EKFGK 38

Query: 62  VASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           +A  LS D  SAKR G LG FGRG+M KPFE+A + L++GE+SE V ++ G H+I R G
Sbjct: 39  LAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} Length = 110

 Score =  102 bits (256), Expect = 7e-30
 Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
           S  +V A HIL+K                       + A  +L+ I  DI SGK  F   
Sbjct: 5   SVTEVHARHILLK----------------PSPIMNDQQARLKLEEIAADIKSGKTTFAAA 48

Query: 63  ASRLSDC-SSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           A   S    SA +GGDLG          F +A   L  G+IS  V +  G HLI    
Sbjct: 49  AKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLD 106

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92

 Score = 99.1 bits (248), Expect = 1e-28
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 26/115 (22%)

Query: 4   ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
           A    A HIL+K                       + A      + + I +G A F ++A
Sbjct: 1   AKTAAALHILVK---------------------EEKLA----LDLLEQIKNG-ADFGKLA 34

Query: 64  SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            + S C S KRGGDLG F +GQM   F++  ++  + E +  + T  G H+I   
Sbjct: 35  KKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 89

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} Length = 112

 Score = 95.8 bits (239), Expect = 3e-27
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 18/110 (16%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           + R   I +                   +   +    +  + I + +  G   F   A +
Sbjct: 7   EYRIGEIFLA-----------------ATEENKPQVFANAEKIVEQLKQG-GSFVAYARQ 48

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
            S+ S+A  GGDLG     Q+         ++  G+++  V+   G  ++
Sbjct: 49  YSEASTAAVGGDLGWIRLAQLPTELATTAASMGPGQLAGPVEIRGGFSIL 98

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103

 Score = 95.4 bits (238), Expect = 4e-27
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           ++  SHILI             PE    ++     A SQ +AI D   +G A F ++A  
Sbjct: 2   ELNLSHILIP-----------LPENP--TSDQVNEAESQARAIVDQARNG-ADFGKLAIA 47

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
            S    A  GG +G     ++   F +A    K G+I   + +  G H++
Sbjct: 48  HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHIL 97

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93

 Score = 93.8 bits (234), Expect = 1e-26
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 27/114 (23%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           ++RASHIL+                       +++A    + +   +  G  KF+++A  
Sbjct: 4   KIRASHILVA---------------------DKKTA----EEVEKKLKKG-EKFEDLAKE 37

Query: 66  LSDCSSAKRGGDLGNFGR-GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            S  SSA +GGDLG F + GQM + F +A + LK GE+S+ V T  G H+I +T
Sbjct: 38  YSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKKT 91

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB: 3ui5_A 1fjd_A 1eq3_A Length = 101

 Score = 86.9 bits (216), Expect = 8e-24
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 33/122 (27%)

Query: 4   ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
           +N V+  HIL +                            ++    + + SG  +F+EVA
Sbjct: 5   SNAVKVRHILCEKH-------------------------GKIMEAMEKLKSG-MRFNEVA 38

Query: 64  SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEV------VDTDSGVHLIMR 117
           ++ S+   A++GGDLG   RG M  PF+EA + L +  + +       V T  G H+IM 
Sbjct: 39  AQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 97

Query: 118 TG 119
            G
Sbjct: 98  EG 99

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102

 Score = 83.4 bits (207), Expect = 2e-22
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 28/115 (24%)

Query: 2   SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
           +   + R S I  K                     T + A    +A+ D++  G   F  
Sbjct: 1   TQPQRTRYSIIQTK---------------------TEDEA----KAVLDELNKG-GDFAA 34

Query: 62  VASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           +A   S D  SA+ GGD+G      +    + A    + G++S V+ +  G  ++
Sbjct: 35  LAKEKSADIISARNGGDMGWLEDATIPDELKNAGL-KEKGQLSGVIKSSVGFLIV 88

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} Length = 252

 Score = 84.4 bits (209), Expect = 2e-21
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
                +V+A HIL+    + ++A               +  +++L+ ++       AKF 
Sbjct: 107 YVKPARVQAKHILVA---TEKEA---------------KDIINELKGLKGK--ELDAKFS 146

Query: 61  EVASRLSDC-SSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEI-SEVVDTDSGVHLIMRT 118
           E+A   S    S  +GG+LG F +  M KPF +A + LK G I +  V T+ G H+I++ 
Sbjct: 147 ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKE 206

Query: 119 G 119
            
Sbjct: 207 N 207

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Length = 325

 Score = 80.4 bits (198), Expect = 2e-19
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 20/117 (17%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           + R   I  +                  S         ++  IR  I++  + F  +A  
Sbjct: 161 RYRIISIAPE----------------NDSIQEENRLYKEVSEIRKSILADPSSFALIAGS 204

Query: 66  LSDC-SSAKRGGDLGNFGRGQMQKPFE---EATYNLKIGEISEVVDTDSGVHLIMRT 118
             +  +   R G +       + K  +        L  G +SEV   +   + I++ 
Sbjct: 205 PRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKI 261

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 74.7 bits (183), Expect = 3e-17
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 31  RVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKP 89
           +     T E A  +L+ I  DI SGK  F   A   S D  SA +GGDLG          
Sbjct: 273 KPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPA 332

Query: 90  FEEATYNLKIGEISEVVDTDSGVHLIM 116
           F +A   L  G++S  V +  G HLI 
Sbjct: 333 FRDALTRLNKGQMSAPVHSSFGWHLIE 359

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 65.1 bits (158), Expect = 8e-14
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 33  ISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEE 92
            ++     A SQ +AI D   +G A F ++A   S    A  GG +G     ++   F +
Sbjct: 167 PTSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQ 225

Query: 93  ATYNLKIGEISEVVDTDSGVHLI 115
           A    K G+I   + +  G H++
Sbjct: 226 ALSTAKKGDIVGPIRSGVGFHIL 248

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Length = 252

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 5/59 (8%), Positives = 15/59 (25%)

Query: 57  AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
           +   +    + +           +                + +G  S V++  +G  L 
Sbjct: 143 SNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELY 201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	100.0
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	100.0
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	99.97
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	99.97
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.97
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	99.97
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	99.97
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	99.97
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	99.96
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	99.96
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	99.96
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	99.96
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.95
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	99.94
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	99.89
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.88
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	99.88
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.85
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	99.64

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=100.00  E-value=7.7e-34  Score=187.78  Aligned_cols=114  Identities=46%  Similarity=0.746  Sum_probs=102.1

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR   83 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~   83 (119)
                      |++++++||||++++...+..+...+...  ..+.++|++++++|+++|++|+.+|++||++||+++++.+||+|||+.+
T Consensus         2 pe~vrasHILi~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~   79 (115)
T 2lj4_A            2 SEKLRAAHLLVKFSGSRNPVSRRTGDSTA--DVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSS   79 (115)
T ss_dssp             CCEEEEEEEEECCTTSSCCCCTTTSSCCT--TSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGTTSEEEEEET
T ss_pred             CCcEEEEEEEEecCCccChhhhhhccccc--cccHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcccccCCccceecC
Confidence            79999999999988776665555433332  5678899999999999999996699999999999999999999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ++|+|+|.+++|+|++|++|+||+|++|||||+|+.
T Consensus        80 ~~~~~~f~~a~~~l~~GeiS~pv~t~~G~HIIkl~A  115 (115)
T 2lj4_A           80 GEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRLA  115 (115)
T ss_dssp             TSSCHHHHHHHTTSCBTCBCCCEECSSSEEEEEECC
T ss_pred             CCCCchHHHHHhcCCCCCCCCcEEeCCeEEEEEEeC
Confidence            999999999999999999999999999999999974

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=100.00  E-value=7.7e-33  Score=184.92  Aligned_cols=115  Identities=50%  Similarity=0.818  Sum_probs=98.3

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |..|++|+++||||++++...+..+.. +..   ..++++|++++++|+++|++|+++|++||++||+++++.+||+|||
T Consensus         9 ~~~~~~v~~~HILi~~~~~~~p~~~~~-~~~---~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~   84 (123)
T 3i6c_A            9 QGEPARVRCSHLLVKHSQSRRPSSWRQ-EQI---TRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGA   84 (123)
T ss_dssp             --CCSEEEEEEEEECCTTSSSCCBTTB-SSC---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEE
T ss_pred             cCCCcEEEEEEEEEecCCccCccccch-hhh---hhHHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCchhhhCCceee
Confidence            568999999999999865433322211 111   4578999999999999999985699999999999999999999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +.+++|+|+|.+++|+|++|++|+||++++|||||+|++
T Consensus        85 ~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~E  123 (123)
T 3i6c_A           85 FSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  123 (123)
T ss_dssp             EETTTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEEECC
T ss_pred             EcCCCCCHHHHHHHHhCCCCCccccEEECCEEEEEEEeC
Confidence            999999999999999999999999999999999999986

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=99.97  E-value=2.4e-32  Score=185.89  Aligned_cols=119  Identities=78%  Similarity=1.216  Sum_probs=107.4

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |..|++|+++||||+.+...++.+|+.+++..++..+.++|+++|++|+++|++|..+|++||++||+++++.+||+|||
T Consensus        21 f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~  100 (139)
T 1j6y_A           21 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGS  100 (139)
T ss_dssp             CSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEE
T ss_pred             cCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCchhhcCCeeee
Confidence            67899999999999988766666676676666667888999999999999999984369999999999888999999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +..++|+|+|.+++|+|++|+||+||++++|||||+|++
T Consensus       101 ~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~~  139 (139)
T 1j6y_A          101 FGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA  139 (139)
T ss_dssp             CSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSCC
T ss_pred             ecccccCHHHHHHHHcCCCCCccccEEECCEEEEEEEeC
Confidence            999999999999999999999999999999999999874

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=99.97  E-value=2.3e-31  Score=175.15  Aligned_cols=99  Identities=18%  Similarity=0.351  Sum_probs=91.9

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG   82 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~   82 (119)
                      .+++|+++||||+..                 +.+.++|+++|++|+++|++| ++|++||++||+++++.+||++||+.
T Consensus         4 ~~~~~~v~hIli~~~-----------------~~~~~~a~~~A~~i~~~l~~G-~~F~~lA~~~S~d~sa~~GGdlG~~~   65 (112)
T 3gpk_A            4 GTEEYRIGEIFLAAT-----------------EENKPQVFANAEKIVEQLKQG-GSFVAYARQYSEASTAAVGGDLGWIR   65 (112)
T ss_dssp             -CCEEEEEEEEEECC-----------------GGGHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEEEC
T ss_pred             CCcEEEEEEEEEeCC-----------------hhhHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcchhcCcccceEc
Confidence            468999999999942                 456788999999999999998 79999999999988999999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +++|+|+|.+++|+|++|++|+||++++|||||+|.+
T Consensus        66 ~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~~  102 (112)
T 3gpk_A           66 LAQLPTELATTAASMGPGQLAGPVEIRGGFSILYLID  102 (112)
T ss_dssp             GGGSCHHHHHHHHHCCTTCEEEEEEETTEEEEEEEEE
T ss_pred             ccccCHHHHHHHHhCCCCCccceEEECCEEEEEEEEe
Confidence            9999999999999999999999999999999999974

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=99.97  E-value=6.3e-31  Score=183.59  Aligned_cols=114  Identities=49%  Similarity=0.826  Sum_probs=99.7

Q ss_pred             CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441            2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF   81 (119)
Q Consensus         2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~   81 (119)
                      ..+++|+++||||++.....+++|+..+ .   ..++++|++++++|+++|++|+++|++||++||+++++.+||||||+
T Consensus        53 ~~~~~v~~~HILi~~~~~~~p~~~~~~~-~---~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~  128 (166)
T 3tc5_A           53 GEPARVRCSHLLVKHSQSRRPSSWRQEK-I---TRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF  128 (166)
T ss_dssp             -CCSCEEEEEEEECCTTSSSCCBTTBSS-C---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEE
T ss_pred             ccccceeEeeeEEecccccCccccchhh-h---hhHHHHHHHHHHHHHHHHHcCccCHHHHHHHhCcccHHhcCCcccee
Confidence            4578999999999987655444443221 1   46789999999999999999856999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .+++|+++|.+++|+|++|++|+||++++|||||+|++
T Consensus       129 ~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~e  166 (166)
T 3tc5_A          129 SRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  166 (166)
T ss_dssp             CTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEEEEECC
T ss_pred             cccccCHHHHHHHHhCCCCCCcccEEECCEEEEEEEeC
Confidence            99999999999999999999999999999999999986

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=99.97  E-value=3.3e-31  Score=173.77  Aligned_cols=101  Identities=36%  Similarity=0.443  Sum_probs=91.6

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNF   81 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~   81 (119)
                      ..++|+++||||+.+.                ..+.++|+++|++|+++|++|..+|++||++||+++ ++.+||++||+
T Consensus         5 ~~~~v~~~hIli~~~~----------------~~~~~~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~   68 (110)
T 4g2p_A            5 SVTEVHARHILLKPSP----------------IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWA   68 (110)
T ss_dssp             CCEEEEEEEEEECCCS----------------SSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEE
T ss_pred             cccEEEEEEEEEECCC----------------CCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCee
Confidence            4579999999999754                234578999999999999998339999999999975 89999999999


Q ss_pred             cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ..++|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus        69 ~~~~l~~~f~~a~~~l~~Geis~pv~t~~G~hIikv~~  106 (110)
T 4g2p_A           69 TPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLD  106 (110)
T ss_dssp             CGGGSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEEEE
T ss_pred             cccccCHHHHHHHHcCCCCCcCccEEECCEEEEEEEEE
Confidence            99999999999999999999999999999999999974

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=99.97  E-value=1.2e-30  Score=168.94  Aligned_cols=101  Identities=27%  Similarity=0.327  Sum_probs=91.7

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG   84 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~   84 (119)
                      ++|+++||+|+.+...+             ..+.++++++|++++++|++| ++|++||++||+++++.+||++||+..+
T Consensus         1 ~~~~~~hIli~~~~~~~-------------~~~~~~a~~~a~~i~~~l~~g-~~F~~lA~~~S~~~s~~~gG~lg~~~~~   66 (103)
T 2pv1_A            1 TELNLSHILIPLPENPT-------------SDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQ   66 (103)
T ss_dssp             CCEEEEEEEEECCSSCC-------------HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEEECGG
T ss_pred             CcEEEEEEEEECCCCCC-------------HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcccccCCccceEchh
Confidence            46999999999864321             456678899999999999998 7999999999998889999999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +|+++|.+++++|++|+||+||++++|||||+|++
T Consensus        67 ~l~~~f~~a~~~l~~G~is~pv~t~~G~hii~v~~  101 (103)
T 2pv1_A           67 ELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND  101 (103)
T ss_dssp             GSCHHHHHHTTTCCTTCEEEEEEETTEEEEEEEEE
T ss_pred             hcCHHHHHHHHcCCCCCeeccEEECCEEEEEEEEE
Confidence            99999999999999999999999999999999974

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=99.97  E-value=5.1e-30  Score=168.01  Aligned_cols=107  Identities=35%  Similarity=0.520  Sum_probs=94.1

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNF   81 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~   81 (119)
                      .+++++++||+|+++...++.      .    ..+.++++++|++|+++|++|+++|++||++||+++ ++.+||++||+
T Consensus         4 ~~~~~~~~hIli~~~~~~~~~------~----~~~~~~~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~   73 (111)
T 2jzv_A            4 GSDSKKASHILIKVKSKKSDK------E----GLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYV   73 (111)
T ss_dssp             CCSEEEEEEEEEEBCSCSSCS------S----SBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEE
T ss_pred             CCcEEEEEEEEEECCCCCChh------h----hhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCcccee
Confidence            578999999999987543211      0    123677899999999999998569999999999987 89999999999


Q ss_pred             cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .+++|+++|.+++|+|++|+||+||++++|||||+|++
T Consensus        74 ~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~  111 (111)
T 2jzv_A           74 LKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADK  111 (111)
T ss_dssp             ETTSSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEECC
T ss_pred             cCCcccHHHHHHHHhCCCCCcCccEEECCEEEEEEEeC
Confidence            99999999999999999999999999999999999975

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=99.96  E-value=3.7e-29  Score=176.07  Aligned_cols=115  Identities=50%  Similarity=0.894  Sum_probs=98.3

Q ss_pred             CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441            2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF   81 (119)
Q Consensus         2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~   81 (119)
                      ..+++++++||||+.+....+.+|..+.+.   ..++++|+++++.|+++|++|..+|++||++||+++++.+||+|||+
T Consensus        63 ~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~---~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~~  139 (177)
T 1yw5_A           63 NEDGQVRVSHLLIKNNQSRKPKSWKSPDGI---SRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFF  139 (177)
T ss_dssp             CTTSCEEEEEEEECCTTSSSCCBTTBTTCC---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEE
T ss_pred             CCcceEEEEEEEEecCCccCcccccccccc---hhHHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcchhcCCcccee
Confidence            578899999999998765444333322111   34578899999999999999833799999999999899999999999


Q ss_pred             cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .+++|+++|.+++|+|++|+||+||++++|||||+|++
T Consensus       140 ~~~~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIikv~~  177 (177)
T 1yw5_A          140 SKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG  177 (177)
T ss_dssp             CTTSSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEECC
T ss_pred             cccccCHHHHHHHHcCCCCCcCCeEEECCEEEEEEEeC
Confidence            99999999999999999999999999999999999975

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=99.96  E-value=4.9e-29  Score=159.91  Aligned_cols=93  Identities=46%  Similarity=0.796  Sum_probs=86.4

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhC-CccccccCCccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS-DCSSAKRGGDLG   79 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S-~~~~~~~gG~~g   79 (119)
                      |..|++++++||+|+.                         +++|++++++|++| ++|+++|++|| +++++.+||++|
T Consensus         4 ~~~~~~~~~~hIl~~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~d~~s~~~GG~lG   57 (97)
T 2rqs_A            4 GSMADKIKCSHILVKK-------------------------QGEALAVQERLKAG-EKFGKLAKELSIDGGSAKRDGSLG   57 (97)
T ss_dssp             CCCCCSEEEEEEEESC-------------------------HHHHHHHHHHHTTT-CCHHHHHHHTCCCCGGGGGTTEEE
T ss_pred             ccccceEEEEEEEeCC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCCcchhcCceee
Confidence            4678999999999984                         36789999999998 69999999999 578999999999


Q ss_pred             cccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           80 NFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        80 ~~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      |+..++|+++|.+++++|++|+||+||++++|||||+|.+
T Consensus        58 ~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~d   97 (97)
T 2rqs_A           58 YFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG   97 (97)
T ss_dssp             EECTTSSCHHHHHHHTTCTTSCBCCCEECSSCEEEEEECC
T ss_pred             eEcCCCCCHHHHHHHHcCCCCCccccEEECCEEEEEEEeC
Confidence            9999999999999999999999999999999999999975

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=99.96  E-value=6.2e-29  Score=158.01  Aligned_cols=89  Identities=34%  Similarity=0.527  Sum_probs=83.4

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG   84 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~   84 (119)
                      ++++++||+|+.                         +++|++++++|++| ++|+++|++||+++++.+||++||+..+
T Consensus         2 ~~~~~~hIl~~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~~~s~~~gGdlg~~~~~   55 (92)
T 1jns_A            2 KTAAALHILVKE-------------------------EKLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQG   55 (92)
T ss_dssp             CEEEEEEEEESS-------------------------HHHHHHHHHHHHHT-CCHHHHHHHHHCSTTTTTGGGCCEEETT
T ss_pred             CEEEEEEEEeCC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCcchhcCCeeeEEcCc
Confidence            689999999985                         25789999999998 6999999999998899999999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus        56 ~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~   90 (92)
T 1jns_A           56 QMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY   90 (92)
T ss_dssp             SSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEEC
T ss_pred             ccCHHHHHHHHhCCCCCcCCcEEECCEEEEEEEEe
Confidence            99999999999999999999999999999999985

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=99.96  E-value=9.3e-29  Score=157.30  Aligned_cols=90  Identities=40%  Similarity=0.697  Sum_probs=83.6

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc-
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG-   82 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~-   82 (119)
                      +++++++||+|+.                         +++|++++++|++| ++|+++|++||+++++.+||++||+. 
T Consensus         2 ~~~~~~~hIl~~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~~~s~~~gG~lg~~~~   55 (93)
T 1zk6_A            2 SGKIRASHILVAD-------------------------KKTAEEVEKKLKKG-EKFEDLAKEYSTDSSASKGGDLGWFAK   55 (93)
T ss_dssp             -CCEEEEEEEESS-------------------------HHHHHHHHHHHHHT-CCHHHHHHHHCCSGGGGGTTEEEEECT
T ss_pred             CCEEEEEEEEecc-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCchhhhCCeeeeecc
Confidence            5789999999983                         36789999999998 69999999999988999999999999 


Q ss_pred             CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .++|+|+|.+++++|++|+||+||++++|||||+|.+
T Consensus        56 ~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~   92 (93)
T 1zk6_A           56 EGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKKTE   92 (93)
T ss_dssp             TTSSCTTHHHHHHHSCTTCBCCCEECSSCEEEEEEEE
T ss_pred             cccCCHHHHHHHHcCCCCCccceEEECCEEEEEEEec
Confidence            9999999999999999999999999999999999974

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=99.95  E-value=7.3e-28  Score=155.71  Aligned_cols=89  Identities=37%  Similarity=0.657  Sum_probs=82.3

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR   83 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~   83 (119)
                      +++|+++||+|+.                         +++|++++++|++| ++|++||++||+++ +.+||++||+.+
T Consensus         5 ~~~v~~~~Ilv~~-------------------------~~~A~~i~~~l~~G-~~F~~lA~~~S~d~-a~~GGdlG~~~~   57 (101)
T 3ui4_A            5 SNAVKVRHILCEK-------------------------HGKIMEAMEKLKSG-MRFNEVAAQYSEDK-ARQGGDLGWMTR   57 (101)
T ss_dssp             GCEEEEEEEEESS-------------------------HHHHHHHHHHHHTT-CCHHHHHHHHCSSS-GGGTTEEEEEET
T ss_pred             CcEEEEEEEEECC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCcCc-hhcCCceeeEcC
Confidence            5799999999984                         36789999999998 79999999999974 789999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccc------eeEcCCeEEEEEEeC
Q 033441           84 GQMQKPFEEATYNLKIGEISE------VVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G~is~------pi~s~~G~hIv~v~~  119 (119)
                      ++|+++|.+++|+|++|++|.      ||++++|||||+|++
T Consensus        58 ~~l~~~f~~a~~~l~~G~vs~~~~~~~pv~t~~G~hIikv~~   99 (101)
T 3ui4_A           58 GSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEG   99 (101)
T ss_dssp             TSSCHHHHHHHHTSCCCBTTBCCBCSSCEEETTEEEEEEEEE
T ss_pred             CCCCHHHHHHHHhCCCCCCccCcccCCcEEECCEEEEEEEEe
Confidence            999999999999999999997      999999999999974

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=99.94  E-value=1.8e-27  Score=154.10  Aligned_cols=90  Identities=21%  Similarity=0.385  Sum_probs=82.2

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccccC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNFGR   83 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~~~   83 (119)
                      ++++++|||+...                       ++++|++|+++|++| ++|++||++||+++ ++.+||++||+.+
T Consensus         2 ~~~~~~hIl~~~~-----------------------~~~~A~~i~~~l~~G-~~F~~lA~~~S~d~~sa~~GGdlG~~~~   57 (102)
T 2kgj_A            2 QPQRTRYSIIQTK-----------------------TEDEAKAVLDELNKG-GDFAALAKEKSADIISARNGGDMGWLED   57 (102)
T ss_dssp             CCCEEEEEEEEES-----------------------SHHHHHHHHHHHHHT-SCHHHHHHHTCTTHHHHTTTSEEEEEET
T ss_pred             CEEEEEeeecChh-----------------------hHHHHHHHHHHHHCC-CCHHHHHHHhCCCchhhhcCCccceecc
Confidence            6799999998641                       146789999999998 69999999999986 8999999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ++|+|+|.+++|+ ++|+||+||++++|||||+|.+
T Consensus        58 ~~l~~~f~~a~~~-~~GeiS~pv~t~~G~hIikv~~   92 (102)
T 2kgj_A           58 ATIPDELKNAGLK-EKGQLSGVIKSSVGFLIVRLDD   92 (102)
T ss_dssp             TCCCHHHHTTCCC-STTCEEEEEEETTEEEEEEEEE
T ss_pred             cccCHHHHHHHhc-CCCCccccEEECCEEEEEEEee
Confidence            9999999999999 9999999999999999999974

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=99.89  E-value=3.2e-23  Score=151.75  Aligned_cols=94  Identities=35%  Similarity=0.600  Sum_probs=81.9

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHh--Ch---hhHHHHHHHhCCccc-ccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVS--GK---AKFDEVASRLSDCSS-AKR   74 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~--g~---~~F~~la~~~S~~~~-~~~   74 (119)
                      |..|++++++||+|+.+                         +.|+.++++|+.  |+   ++|+++|++||.+++ +.+
T Consensus       107 f~~~~~~~~~~I~~~~~-------------------------~~A~~~~~~l~~~~g~~~~~~F~~lA~~~S~~~~~~~~  161 (252)
T 3rfw_A          107 YVKPARVQAKHILVATE-------------------------KEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQ  161 (252)
T ss_dssp             SEECCEEEEEEEEESSH-------------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCTTTGGG
T ss_pred             ccccceEEEEEEEeCCH-------------------------HHHHHHHHHHHhhcCCCccccHHHHHHHhCCCCchhhc
Confidence            55689999999999852                         456788888884  43   499999999999654 456


Q ss_pred             CCccccccCCCCcHHHHHHHhcCCCCCcc-ceeEcCCeEEEEEEeC
Q 033441           75 GGDLGNFGRGQMQKPFEEATYNLKIGEIS-EVVDTDSGVHLIMRTG  119 (119)
Q Consensus        75 gG~~g~~~~~~l~~~~~~av~~l~~G~is-~pi~s~~G~hIv~v~~  119 (119)
                      ||++||+..++|+|+|.+++++|++|++| .||++++|||||+|++
T Consensus       162 gGdlg~~~~~~l~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~~  207 (252)
T 3rfw_A          162 GGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKEN  207 (252)
T ss_dssp             TTEEEEECSSSSCHHHHHHHHHSCTTEECSSCEEETTEEEEEEEEE
T ss_pred             CCcccccccccccHHHHHHHHcCCCCCccCceEEECCEEEEEEEEE
Confidence            99999999999999999999999999999 5999999999999974

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.88  E-value=8.1e-23  Score=157.76  Aligned_cols=105  Identities=26%  Similarity=0.322  Sum_probs=92.1

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |..+++++++||+|+.+...             +..+..+++++|++++.+|++| .+|+++|+.||+++++.+||++||
T Consensus       148 ~~~~~~~~~~~i~i~~~~~~-------------s~~~~~~~~~~a~~~~~~l~~g-~~F~~lA~~~S~~~~~~~gG~lg~  213 (408)
T 1m5y_A          148 NDASTELNLSHILIPLPENP-------------TSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGW  213 (408)
T ss_dssp             ----CCEEEEEEEEECCSSC-------------CHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEE
T ss_pred             cCCcccEEEEEEEEeCCCCC-------------CHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHcCCCcccccCCcccc
Confidence            45678999999999976421             1456677889999999999998 799999999999889999999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +..++|+|+|.++++.|++|++|+||++++||||++|++
T Consensus       214 ~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~  252 (408)
T 1m5y_A          214 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND  252 (408)
T ss_dssp             ECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEE
T ss_pred             cchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEE
Confidence            999999999999999999999999999999999999974

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=99.88  E-value=4.2e-23  Score=156.47  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=87.5

Q ss_pred             CceeEEeeEEE-eccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHH-HHhChhhHHHHHHHhCCcc-ccccCCcccc
Q 033441            4 ANQVRASHILI-KHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDD-IVSGKAKFDEVASRLSDCS-SAKRGGDLGN   80 (119)
Q Consensus         4 ~~~~~~~~I~i-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~-l~~g~~~F~~la~~~S~~~-~~~~gG~~g~   80 (119)
                      ++.++++||+| +.+..               ......++++|++++.+ +++| ++|++||++||+++ ++.+||++||
T Consensus       157 ~~~~~~~~Ili~~~~~~---------------~~~~~~~~~~a~~i~~~~l~~g-~~F~~lA~~~S~d~~s~~~gG~lg~  220 (325)
T 3nrk_A          157 GFEIRYRIISIAPENDS---------------IQEENRLYKEVSEIRKSILADP-SSFALIAGSPRNDPALRARRGMVEW  220 (325)
T ss_dssp             CEEEEEEEEEECCSSSC---------------HHHHHHHHHHHHHHHHHHHHCT-THHHHHHHSTTSCHHHHHTTTEEEE
T ss_pred             CcceEEEEEEEecCCCC---------------ccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHhCCCccccccCCcccc
Confidence            46789999999 65431               22336888999999999 8888 69999999999975 4589999999


Q ss_pred             ccCCCCc---HHHHHHHhcCCCCCccceeEcCC-eEEEEEEeC
Q 033441           81 FGRGQMQ---KPFEEATYNLKIGEISEVVDTDS-GVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~---~~~~~av~~l~~G~is~pi~s~~-G~hIv~v~~  119 (119)
                      +..++|+   |+|.+++++|++|+||+||++++ |||||+|++
T Consensus       221 ~~~~~l~~~~~~~~~a~~~l~~Geis~pv~t~~~G~hIikv~~  263 (325)
T 3nrk_A          221 ISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEG  263 (325)
T ss_dssp             EEHHHHHHHCHHHHHHHTTCCTTCBCCCEECTTSCEEEEEEEE
T ss_pred             cccccccccCHHHHHHHHcCCCCCCCceEEeCCCeEEEEEEec
Confidence            9999999   99999999999999999999999 999999974

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.85  E-value=5.2e-21  Score=147.63  Aligned_cols=100  Identities=36%  Similarity=0.450  Sum_probs=89.8

Q ss_pred             CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChh-hHHHHHHHhCCc-cccccCCcccc
Q 033441            3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKA-KFDEVASRLSDC-SSAKRGGDLGN   80 (119)
Q Consensus         3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~-~F~~la~~~S~~-~~~~~gG~~g~   80 (119)
                      ..++++++||+|+...                ....+.|++++.+++.+|++| . +|+++|++||.+ .++.+||++||
T Consensus       261 ~~~~~~~~~Il~~~~~----------------~~~~~~a~~~a~~~~~~l~~g-~~~f~~~A~~~s~~~~s~~~gg~lg~  323 (408)
T 1m5y_A          261 SVTEVHARHILLKPSP----------------IMTDEQARVKLEQIAADIKSG-KTTFAAAAKEFSQDPGSANQGGDLGW  323 (408)
T ss_dssp             CCEEEEEEEEEECCCS----------------SSCHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHCCCTTTGGGTTEEEE
T ss_pred             cccchhhheeeecCCC----------------CcCHHHHHHHHHHHHHHHHcC-cccHHHHHHHhCCCcchhhcCCcCcc
Confidence            3468999999999643                234578889999999999998 6 999999999996 58899999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +.+++|+|+|.+++|+|++|++|+||++++|||||+|++
T Consensus       324 ~~~~~~~~~~~~a~f~l~~G~~s~~v~~~~g~~ii~v~~  362 (408)
T 1m5y_A          324 ATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLD  362 (408)
T ss_dssp             ECGGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEE
T ss_pred             cCcccchHHHHHHHHcCCCCCccCcEeeCCeEEEEEEee
Confidence            999999999999999999999999999999999999974

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}

Probab=99.64  E-value=8.7e-17  Score=117.49  Aligned_cols=76  Identities=13%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |..|++++++||++..                             .+++++|++| ++|+             .||++||
T Consensus       130 f~~~~~v~~~~i~~~~-----------------------------~~~~~~l~~g-~~f~-------------l~g~lg~  166 (252)
T 3rgc_A          130 FTFYTQINANIYLSNN-----------------------------PQTLENIKNT-KKTI-------------LKPQNAS  166 (252)
T ss_dssp             CCEESEEEEEEEECSC-----------------------------HHHHHHHHHH-CCCC-------------SCCEEEE
T ss_pred             cCCCceEEEEEecCCC-----------------------------HHHHHHHHhC-CCcc-------------cccccce
Confidence            5678899999999642                             1234567777 5776             3689999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +..++|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus       167 ~~~~~l~~~~~~a~~~l~~G~is~pv~t~~G~hiikv~~  205 (252)
T 3rgc_A          167 LNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKS  205 (252)
T ss_dssp             EETTTSCHHHHHHHHHSCTTCBCCCBTTTTCEEEEEEEE
T ss_pred             ecHHhcCHHHHHHHHcCCCCCcCCcEEeCCeEEEEEEec
Confidence            999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1j6ya_	120	d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Tha	1e-37
d1pina2	119	d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain	4e-28
d1m5ya3	108	d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase	2e-17
d1jnsa_	92	d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichi	1e-14
d1eq3a_	96	d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar	4e-13
d2pv2a1	103	d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase	7e-12

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  121 bits (304), Expect = 1e-37
 Identities = 93/118 (78%), Positives = 111/118 (94%)

Query: 1   MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
           M+S +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 2   MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 61

Query: 61  EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
           EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct: 62  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 119

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 4e-28
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+
Sbjct: 10  RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 65

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
            SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct: 66  FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 118

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (170), Expect = 2e-17
 Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 3   SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
           S  +V A HIL+K                     T E A  +L+ I  DI SGK  F   
Sbjct: 3   SVTEVHARHILLKPSPIM----------------TDEQARVKLEQIAADIKSGKTTFAAA 46

Query: 63  ASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
           A   S D  SA +GGDLG          F +A   L  G++S  V +  G HLI    
Sbjct: 47  AKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLD 104

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (150), Expect = 1e-14
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 26/113 (23%)

Query: 4   ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
           A    A HIL+K +                              + + I +G A F ++A
Sbjct: 1   AKTAAALHILVKEE-------------------------KLALDLLEQIKNG-ADFGKLA 34

Query: 64  SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIM 116
            + S C S KRGGDLG F +GQM   F++  ++  + E +  + T  G H+I 
Sbjct: 35  KKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIK 87

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 4e-13
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 33/121 (27%)

Query: 5   NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVAS 64
           N V+  HIL +  G                         ++    + + SG  +F+EVA+
Sbjct: 1   NAVKVRHILCEKHG-------------------------KIMEAMEKLKSG-MRFNEVAA 34

Query: 65  RLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISE------VVDTDSGVHLIMRT 118
           + S+  + + G   G   RG M  PF+EA + L +  + +       V T  G H+IM  
Sbjct: 35  QYSEDKARQGGDL-GWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVE 93

Query: 119 G 119
           G
Sbjct: 94  G 94

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 103

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 55.2 bits (132), Expect = 7e-12
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 6   QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
           ++  SHILI    +                     A SQ +AI D   +G A F ++A  
Sbjct: 2   ELNLSHILIPLPENPTSDQ-------------VNEAESQARAIVDQARNG-ADFGKLAIA 47

Query: 66  LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIM 116
            S    A  GG +G     ++   F +A    K G+I   + +  G H++ 
Sbjct: 48  HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILK 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	100.0
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	100.0
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	99.96
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	99.96
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	99.96
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	99.95

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-33  Score=186.10  Aligned_cols=119  Identities=78%  Similarity=1.216  Sum_probs=109.7

Q ss_pred             CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441            1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN   80 (119)
Q Consensus         1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~   80 (119)
                      |.+.++++++||||+......+..+...+...+...+.++|.+++++|+.+++.|+.+|+++|++||+++++.+||++||
T Consensus         2 ~~s~e~vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~GG~lGw   81 (120)
T d1j6ya_           2 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGS   81 (120)
T ss_dssp             CSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEE
T ss_pred             CCCcceEEEEEEEEccCcccchhhhccccccccccccHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccc
Confidence            67899999999999998888777777666666667888999999999999999986799999999999899999999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +.+++|+|+|.+++++|++|++|+||+|++|||||+|+.
T Consensus        82 ~~~~~l~~~f~~~~~~l~~G~is~pi~t~~G~HIikvtA  120 (120)
T d1j6ya_          82 FGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA  120 (120)
T ss_dssp             CSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSCC
T ss_pred             chhhhcChHHHHHHHcCCCCCcCCCEEeCCeeEEEEEeC
Confidence            999999999999999999999999999999999999874

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-32  Score=179.84  Aligned_cols=114  Identities=49%  Similarity=0.819  Sum_probs=99.5

Q ss_pred             CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441            2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF   81 (119)
Q Consensus         2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~   81 (119)
                      ..|++++++||||+++....+.++...   . ...++++|++++++++++|++|+.+|++||++||+++++.+||++||+
T Consensus         6 ~~p~~vr~~HILi~~~~~~~~~~~~~~---~-i~~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~   81 (119)
T d1pina2           6 GEPARVRCSHLLVKHSQSRRPSSWRQE---K-ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF   81 (119)
T ss_dssp             CCCSCEEEEEEEECCTTSSSCCBTTBS---S-CCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEE
T ss_pred             CCCcEEEEEEEEEecCCCcCchhhhhh---h-hhhhHHHHHHHHHHHHHHHHcChhhHHHHHHHcCCCcccccccccccc
Confidence            578999999999998765444332111   1 145678899999999999999877999999999999899999999999


Q ss_pred             cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      ..++|+|+|.+++++|++|++|+||+|++|||||+|+|
T Consensus        82 ~~~~l~~~f~~~~~~l~~GeiS~pi~t~~G~HIikv~d  119 (119)
T d1pina2          82 SRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  119 (119)
T ss_dssp             CTTSSCHHHHHHHHHCCTTCBCCCEECSSCEEEEEECC
T ss_pred             ccchHHHHHHHHHhcCCCCCcCCcEEeCCcEEEEEEeC
Confidence            99999999999999999999999999999999999986

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.5e-30  Score=164.02  Aligned_cols=101  Identities=27%  Similarity=0.327  Sum_probs=92.1

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG   84 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~   84 (119)
                      .+|+++||||+.+...+             ......++++|++++.+|+.| ++|+++|++||+++++.+||++||+..+
T Consensus         1 te~~~~hIli~~~~~~~-------------~~~~~~~~~~a~~~~~~l~~g-~~F~~la~~~S~~~~~~~gG~lg~~~~~   66 (103)
T d2pv2a1           1 TELNLSHILIPLPENPT-------------SDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQ   66 (103)
T ss_dssp             CEEEEEEEEEECCSSCC-------------HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEEEEGG
T ss_pred             CceEEEEEEEeCCCCCC-------------HHHHHHHHHHHHHHHHHHHcC-CCHHHHhccccccccccccccccccccc
Confidence            47999999999865321             456678889999999999998 7999999999998899999999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +||++|.+++++|++|++|+||++++|||||+|++
T Consensus        67 ~l~~~~~~~i~~l~~G~is~pi~t~~G~hIikl~~  101 (103)
T d2pv2a1          67 ELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND  101 (103)
T ss_dssp             GSBHHHHHHHHTCCTTCEEEEEEETTEEEEEEEEE
T ss_pred             ccchhhhhhhhhcCCCCCCCcEEECCEEEEEEEee
Confidence            99999999999999999999999999999999974

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.2e-30  Score=165.55  Aligned_cols=100  Identities=36%  Similarity=0.457  Sum_probs=90.9

Q ss_pred             CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCcccccc
Q 033441            4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFG   82 (119)
Q Consensus         4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~   82 (119)
                      -.+++++||||+.+.                ..+.+++++++++++.+++.|+++|+++|++||++ .++.+||++||+.
T Consensus         4 ~tev~vrHILi~~~~----------------~~~~~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~   67 (108)
T d1m5ya3           4 VTEVHARHILLKPSP----------------IMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAT   67 (108)
T ss_dssp             CEEEEEEEEEECCCS----------------SSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEEC
T ss_pred             ccEEEEEEEEEcCCC----------------CCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCcCCccccccccccccc
Confidence            367999999999764                34557788999999999998877999999999995 6789999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      .++|+++|.+++++|++|++|+||++++|||||+|++
T Consensus        68 ~~~l~~~~~~~~~~l~~GeiS~pi~t~~G~hIikl~~  104 (108)
T d1m5ya3          68 PDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLD  104 (108)
T ss_dssp             GGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEE
T ss_pred             cccccHHHHHHHHhCCCCCCCccEEeCCEEEEEEEEE
Confidence            9999999999999999999999999999999999975

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.4e-29  Score=157.97  Aligned_cols=89  Identities=34%  Similarity=0.527  Sum_probs=82.7

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG   84 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~   84 (119)
                      +++.++|||++.                         +++|.+++++|++| ++|+++|++||+++++.+||++||+.++
T Consensus         2 ~~~~a~HIlv~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~d~s~~~gG~lG~~~~~   55 (92)
T d1jnsa_           2 KTAAALHILVKE-------------------------EKLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQG   55 (92)
T ss_dssp             CEEEEEEEEESS-------------------------HHHHHHHHHHHHHT-CCHHHHHHHHHCSTTTTTGGGCCEEETT
T ss_pred             CcceEEEEEeCC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCcccchhhhhceeeHh
Confidence            578999999984                         25678899999998 7999999999998888999999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441           85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG  119 (119)
Q Consensus        85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~  119 (119)
                      +|+|+|.+++++|++|++|+||+|++|||||+|++
T Consensus        56 ~l~~~f~~~~~~l~~G~vs~pi~t~~G~HIikv~d   90 (92)
T d1jnsa_          56 QMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY   90 (92)
T ss_dssp             SSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEEC
T ss_pred             hhhhHHHHHHHhCCCCCcCCCEEeCCeEEEEEEEe
Confidence            99999999999999999999999999999999985

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=99.95  E-value=5e-28  Score=153.71  Aligned_cols=88  Identities=38%  Similarity=0.666  Sum_probs=78.8

Q ss_pred             ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441            5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG   84 (119)
Q Consensus         5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~   84 (119)
                      +.|++||||+...                         .+|++++++|++| ++|++||++||+++ +.+||++||+..+
T Consensus         1 ~~v~vrHIl~~~~-------------------------~~a~~i~~~i~~g-~~F~~lA~~~S~d~-~~~~G~lG~~~~~   53 (96)
T d1eq3a_           1 NAVKVRHILCEKH-------------------------GKIMEAMEKLKSG-MRFNEVAAQYSEDK-ARQGGDLGWMTRG   53 (96)
T ss_dssp             CCEEEEEEEECCC-------------------------STHHHHHHHHTTT-TSHHHHHHHHCCCT-TTCCSEEEEESSC
T ss_pred             CcEEEEEEEECCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCcCc-cccccccceechH
Confidence            4799999999753                         3578899999998 79999999999874 5688999999999


Q ss_pred             CCcHHHHHHHhcCCCCCcc------ceeEcCCeEEEEEEeC
Q 033441           85 QMQKPFEEATYNLKIGEIS------EVVDTDSGVHLIMRTG  119 (119)
Q Consensus        85 ~l~~~~~~av~~l~~G~is------~pi~s~~G~hIv~v~~  119 (119)
                      +|+|+|.+++|+|++|++|      +||+|++|||||+|++
T Consensus        54 ~l~~ef~~a~f~l~~g~is~~~~~~~pi~T~~G~HIikv~~   94 (96)
T d1eq3a_          54 SMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEG   94 (96)
T ss_dssp             CSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEEEEE
T ss_pred             HhhHHHHHHHHhCCCCcCccccccCCCEecCCeEEEEEEee
Confidence            9999999999999999987      4999999999999974