Citrus Sinensis ID: 033459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW
Secondary Structure (PSIPRED)
cccccccccccHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maaaassssslydvlgipvsadgNEIKAAYRRLARtchpdvvatnqkemsANEFIKIHAAystlsdphkranydRALFvvrkrpvssfsssslssepmgsmsrfsgnfttrnwetdqcw
Flexible Loop (DISEMBL)
maaaassssslydvLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAystlsdphkrANYDRALFVvrkrpvssfsssslssepmgsmsrfsgnfttrnwetdqcw
Low Complexity Region (SEG)
MaaaasssssLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRPVssfsssslssepmgsmsRFSGNFTTRNWETDQCW
Disordered region (IsUnstruct)
**********LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVR**************************************
Disordered Region (DISOPRED)
******S***LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ*EMSANEFIKIHAAYSTLSDPHKRANYDRALFV******************MGSMSRFSGNFTTRN*E*DQCW
Disordered Region (DISEMBL)
**********LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKR******************SRFSGNFTTRNWETDQCW
Disordered Region (DISPRO)
*******SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV*************************SGNFTTRNW****C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	no	no	0.815	0.602	0.517	4e-25
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.806	0.257	0.407	5e-14
Q9SDN0	197	Chaperone protein dnaJ 20	no	no	0.571	0.345	0.485	1e-12
C0ZB49	375	Chaperone protein DnaJ OS	yes	no	0.512	0.162	0.545	4e-12
B0CAZ0	374	Chaperone protein DnaJ OS	yes	no	0.512	0.163	0.5	8e-12
B8CXL0	375	Chaperone protein DnaJ OS	yes	no	0.563	0.178	0.492	1e-11
Q9LCQ4	375	Chaperone protein DnaJ OS	N/A	no	0.689	0.218	0.409	1e-11
B5YAR4	390	Chaperone protein DnaJ OS	yes	no	0.504	0.153	0.523	2e-11
P50026	287	Chaperone protein DnaJ OS	yes	no	0.512	0.212	0.538	2e-11
B1LCI2	369	Chaperone protein DnaJ OS	yes	no	0.563	0.181	0.485	3e-11

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 15/112 (13%)

Query: 9   SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQK-EMSANEFIKIHAAYSTLSDP 67
           +SLYDVL +P+ A   +IK+AYRRLAR CHPDV  T++    SA+EF+KIHAAY TLSDP
Sbjct: 64  ASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDP 123

Query: 68  HKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
            KR+ YDR +   R RP+ +  +S L            G++  RNWETDQCW
Sbjct: 124 EKRSVYDRRML-RRSRPL-TVGTSGL------------GSYVGRNWETDQCW 161

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 7/103 (6%)

Query: 8   SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67
           +   Y++LG+  SAD  E+K AYRRLAR  HPDV   N++  +  +F +I+ AY  LSDP
Sbjct: 2   ARDFYEILGVSRSADAEELKRAYRRLARKYHPDV---NKEPGAEEKFKEINRAYEVLSDP 58

Query: 68  HKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTT 110
             RANYDR      +  VS   ++  S   +G M  F+  F T
Sbjct: 59  QARANYDR----FGEAGVSGVGAAGFSDFGIGDMGGFADIFET 97

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%)

Query: 10  SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHK 69
           S YD+LG+  S    EIK AY++LAR  HPDV   ++ E   + FI++  AY TLSDP +
Sbjct: 66  SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRR 125

Query: 70  RANYDRAL 77
           R  YDR L
Sbjct: 126 RVLYDRDL 133

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|C0ZB49|DNAJ_BREBN Chaperone protein DnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
          LY+VLG+   AD +EIK AYR+LAR  HPDV     KE  A E F ++  AY  LS+P K
Sbjct: 5  LYEVLGVAKDADADEIKKAYRKLARQYHPDV----NKEADAEEKFKEVKDAYDILSEPQK 60

Query: 70 RANYDR 75
          RA YDR
Sbjct: 61 RAQYDR 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) (taxid: 358681)

>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          YD+LG+  SAD +E+K +YRRLAR  HPDV   N++  + ++F +I+ AY TLSDP  R 
Sbjct: 6  YDILGVSRSADPDELKRSYRRLARKYHPDV---NKEPGAEDKFKEINKAYETLSDPQMRG 62

Query: 72 NYDR 75
           YD+
Sbjct: 63 RYDQ 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|B8CXL0|DNAJ_HALOH Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 6  SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTL 64
          ++S   Y++LG+   AD  EIK AYRRLAR  HPD+   N+ +  A E F +I  AY  L
Sbjct: 2  ATSKDYYEILGVSRDADQKEIKKAYRRLARKYHPDI---NKDDPDAEEKFKEISEAYEIL 58

Query: 65 SDPHKRANYDR 75
          SDP KRA YD+
Sbjct: 59 SDPDKRARYDQ 69

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

>sp|Q9LCQ4|DNAJ_BRECH Chaperone protein DnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLG+   AD +EIK AYR+LAR  HPDV   N+   +  +F ++  AY  LS+P KRA
Sbjct: 6  YEVLGVGKGADADEIKKAYRKLARQYHPDV---NKAADAEEKFKEVKEAYDVLSEPQKRA 62

Query: 72 NYDRALFVVRKRPVSSFSSSSLSSEPMG 99
           YDR      + P   F      +  MG
Sbjct: 63 QYDR---FGHQDPNQGFGGGGFDASGMG 87

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Brevibacillus choshinensis (taxid: 54911)

>sp|B5YAR4|DNAJ_DICT6 Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y++LG+P +A  +EIK AYRRL R  HPD+     K+ SA+E F +I+ AY  LSDP KR
Sbjct: 8  YEILGVPRNATQDEIKQAYRRLVRQYHPDL----NKDPSAHEKFKEINEAYEVLSDPQKR 63

Query: 71 ANYDR 75
          A YD+
Sbjct: 64 AQYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

>sp|P50026|DNAJ_SYNE7 Chaperone protein DnaJ OS=Synechococcus elongatus (strain PCC 7942) GN=dnaJ PE=3 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y +LGIP SAD   IKAA+R+LAR CHPD+   N  +  A E F +I  AY  LSDP +R
Sbjct: 8  YALLGIPQSADQAAIKAAFRKLARQCHPDL---NPGDRQAEERFKQISEAYEILSDPDRR 64

Query: 71 ANYDR 75
          A Y R
Sbjct: 65 AEYQR 69

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|B1LCI2|DNAJ_THESQ Chaperone protein DnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++LG+P  A   EIK AY+RL +  HPD    N+KE +   F +I  AY  LSDP KRA
Sbjct: 9  YEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENRKE-AEQRFKEIQEAYEVLSDPQKRA 67

Query: 72 NYDRALFV 79
           YDR  +V
Sbjct: 68 MYDRFGYV 75

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga sp. (strain RQ2) (taxid: 126740)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
359475035	106	PREDICTED: chaperone protein dnaJ 11, ch	0.882	0.990	0.701	4e-36
224078183	158	predicted protein [Populus trichocarpa]	0.890	0.670	0.666	2e-35
255574756	105	Chaperone protein dnaJ 11, chloroplast p	0.873	0.990	0.657	7e-34
359806673	158	uncharacterized protein LOC100800959 [Gl	0.831	0.626	0.631	1e-31
1684851	161	DnaJ-like protein [Phaseolus vulgaris]	0.831	0.614	0.631	2e-31
225457949	165	PREDICTED: chaperone protein dnaJ 11, ch	0.915	0.660	0.663	3e-31
359476816	162	PREDICTED: chaperone protein dnaJ 11, ch	0.924	0.679	0.581	1e-30
224105203	107	predicted protein [Populus trichocarpa]	0.890	0.990	0.605	1e-30
297744638	141	unnamed protein product [Vitis vinifera]	0.655	0.553	0.835	2e-29
356496637	158	PREDICTED: chaperone protein dnaJ 11, ch	0.831	0.626	0.614	4e-29

>gi|359475035|ref|XP_002277590.2| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 89/114 (78%), Gaps = 9/114 (7%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           +SSSSLY+VLGIPVSA GNEIKAAYRRLAR CHPDVVA NQKE SANEF+KIHAAYSTLS
Sbjct: 2   ASSSSLYEVLGIPVSASGNEIKAAYRRLARVCHPDVVAMNQKETSANEFMKIHAAYSTLS 61

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP KRANYD+ LF  R+RPV       +++      S FSG F+ R WETDQCW
Sbjct: 62  DPDKRANYDQDLF-RRRRPV-------MATAMRTGGSSFSG-FSRRTWETDQCW 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078183|ref|XP_002305500.1| predicted protein [Populus trichocarpa] gi|222848464|gb|EEE86011.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 90/114 (78%), Gaps = 8/114 (7%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           +++SS Y+VLG+P+SA G+EIKAAYRRLARTCHPDVV+ NQKEMS+ EFIKIHAAYSTLS
Sbjct: 53  ATTSSFYEVLGLPMSASGHEIKAAYRRLARTCHPDVVSMNQKEMSSTEFIKIHAAYSTLS 112

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP KRA+YDR LF    RP   F SSS+ S  M + S     +T+RNWETDQCW
Sbjct: 113 DPDKRASYDRDLF-RNSRP---FGSSSMRSATMAAAS----GYTSRNWETDQCW 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574756|ref|XP_002528286.1| Chaperone protein dnaJ 11, chloroplast precursor, putative [Ricinus communis] gi|223532323|gb|EEF34124.1| Chaperone protein dnaJ 11, chloroplast precursor, putative [Ricinus communis]

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 89/114 (78%), Gaps = 10/114 (8%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           +S+ SLY+VLGI  SA  +EIKAAYRRLAR+CHPDVV+ NQKEMSANEF+KIHAAYSTLS
Sbjct: 2   ASTVSLYEVLGISASASCHEIKAAYRRLARSCHPDVVSMNQKEMSANEFMKIHAAYSTLS 61

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP+KRANYDR L+   +RP  SFSS+++ +         SG   TRNWETDQCW
Sbjct: 62  DPNKRANYDRDLYSRHRRP--SFSSATVFAA--------SGFTKTRNWETDQCW 105

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806673|ref|NP_001241283.1| uncharacterized protein LOC100800959 [Glycine max] gi|255633852|gb|ACU17287.1| unknown [Glycine max]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 83/114 (72%), Gaps = 15/114 (13%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           SS SSLYD+LGIP  A   EIKAAYRRLAR CHPDV A ++K  SA+EF+KIHAAYSTLS
Sbjct: 60  SSCSSLYDILGIPAGASNQEIKAAYRRLARVCHPDVAAIDRKNSSADEFMKIHAAYSTLS 119

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP KRANYDR+LF  R+RP+S             + + FSG +T RNWETDQCW
Sbjct: 120 DPDKRANYDRSLF-RRQRPLS-------------TAAVFSG-YTRRNWETDQCW 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1684851|gb|AAB36543.1| DnaJ-like protein [Phaseolus vulgaris]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 83/114 (72%), Gaps = 15/114 (13%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           SS SSLYD+LGIP  A   EIKAAYRRLAR CHPDV A ++K  SA+EF+KIHAAYSTLS
Sbjct: 63  SSCSSLYDILGIPAGASSQEIKAAYRRLARVCHPDVAAIDRKNSSADEFMKIHAAYSTLS 122

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP KRANYDR+LF  R+RP+S             + + FSG +T RNWETDQCW
Sbjct: 123 DPDKRANYDRSLF-RRQRPLS-------------TAAVFSG-YTRRNWETDQCW 161

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457949|ref|XP_002274505.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 86/113 (76%), Gaps = 4/113 (3%)

Query: 9   SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPH 68
           +SLYDVLGI + A   EIKAAYRRLAR  HPDVVA +QK+ SA+EFIKIHAAY+TLSDP 
Sbjct: 55  ASLYDVLGINMGATCQEIKAAYRRLARVSHPDVVANSQKDTSADEFIKIHAAYATLSDPE 114

Query: 69  KRANYDRALFVVRKRPVSSFSSSSLSSEPMGS--MSRFSGNFTTRNWETDQCW 119
           KRA+YDR LF  R+RPVSS  + S S+  MGS   S FSG  + R WETDQCW
Sbjct: 115 KRADYDRTLF-RRRRPVSSPFAMSASAATMGSSPASVFSGRSSLR-WETDQCW 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476816|ref|XP_002265844.2| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 92/117 (78%), Gaps = 7/117 (5%)

Query: 3   AAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYS 62
           A  +S +SLY++LGI + A   EIK+AYR+LAR CHPDV A ++K+ SA+EF++IHAAYS
Sbjct: 53  AETASCASLYEILGIRMGATSQEIKSAYRKLARVCHPDVAAISRKDSSADEFMRIHAAYS 112

Query: 63  TLSDPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           TLSDP KRA+YDR+LF +R++P+ S+  + +SS    +MS FSG +T RNWETDQCW
Sbjct: 113 TLSDPEKRADYDRSLF-MRQQPIESY--AGISSP---TMSGFSG-YTRRNWETDQCW 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105203|ref|XP_002313725.1| predicted protein [Populus trichocarpa] gi|222850133|gb|EEE87680.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 86/114 (75%), Gaps = 8/114 (7%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           +++SS Y+VLG+P++   +EIKAAYR+LARTCHPD V+ ++KEMSA EFIKIHAAYSTLS
Sbjct: 2   ATTSSFYEVLGLPMNTTSHEIKAAYRKLARTCHPDAVSMHKKEMSACEFIKIHAAYSTLS 61

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP KR  YDR L+  R RP   F SSS+ S  M + S     +T+RNWETDQCW
Sbjct: 62  DPDKRERYDRDLYRNR-RP---FGSSSVRSATMAAAS----GYTSRNWETDQCW 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744638|emb|CBI37900.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 71/79 (89%), Gaps = 1/79 (1%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           +SSSSLY+VLGIPVSA GNEIKAAYRRLAR CHPDVVA NQKE SANEF+KIHAAYSTLS
Sbjct: 53  ASSSSLYEVLGIPVSASGNEIKAAYRRLARVCHPDVVAMNQKETSANEFMKIHAAYSTLS 112

Query: 66  DPHKRANYDRALFVVRKRP 84
           DP KRANYD+ LF  R+RP
Sbjct: 113 DPDKRANYDQDLF-RRRRP 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496637|ref|XP_003517172.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 81/114 (71%), Gaps = 15/114 (13%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
           SS SSLY+VLGIP  A   EIKAAYRRLAR  HPDV A ++K  SA+EF+KIHAAYSTLS
Sbjct: 60  SSCSSLYEVLGIPAGASNQEIKAAYRRLARVFHPDVAAIDRKNSSADEFMKIHAAYSTLS 119

Query: 66  DPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFTTRNWETDQCW 119
           DP KRANYD+ LF  R+RP+S             + + FSG +T RNWETDQCW
Sbjct: 120 DPDKRANYDQRLF-RRQRPLS-------------TAAVFSG-YTRRNWETDQCW 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.621	0.462	0.586	1.2e-24
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.798	0.590	0.5	2.6e-22
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.781	0.592	0.403	3.4e-13
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.554	0.335	0.484	2.2e-11
TIGR_CMR|CJE_1364	297	CJE_1364 "co-chaperone protein	0.512	0.205	0.530	9.3e-11
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.512	0.160	0.507	6.4e-10
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.504	0.12	0.569	6.5e-10
WB|WBGene00001038	355	dnj-20 [Caenorhabditis elegans	0.512	0.171	0.492	9.1e-10
SGD|S000004080	459	XDJ1 "Chaperone with a role in	0.537	0.139	0.507	9.2e-10
UNIPROTKB|G3MZ88	223	DNAJB9 "Uncharacterized protei	0.504	0.269	0.412	1e-09

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 44/75 (58%), Positives = 56/75 (74%)

Query:    11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
             LY++L IPV +   EIK+AYRRLAR CHPDV   ++   SA++F+KIHAAY TLSDP KR
Sbjct:    69 LYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEKR 128

Query:    71 ANYDRALFVVRKRPV 85
             A YDR   ++R RP+
Sbjct:   129 AVYDRRT-LLRSRPL 142

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/110 (50%), Positives = 69/110 (62%)

Query:    11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHK 69
             LYDVL +P+ A   +IK+AYRRLAR CHPDV  T++    SA+EF+KIHAAY TLSDP K
Sbjct:    66 LYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEK 125

Query:    70 RANYDRALFVVRKRPVXXXXXXXXXXXXXXXXXRFSGNFTTRNWETDQCW 119
             R+ YDR + + R RP+                    G++  RNWETDQCW
Sbjct:   126 RSVYDRRM-LRRSRPLTVGTSGL-------------GSYVGRNWETDQCW 161

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 44/109 (40%), Positives = 55/109 (50%)

Query:    11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
             LY++L +  +A   EIK AYR LA+  HPD       E    +F++IH AY+TL+DP  R
Sbjct:    65 LYELLKVNETASLTEIKTAYRSLAKVYHPDA-----SESDGRDFMEIHKAYATLADPTTR 119

Query:    71 ANYDRALFVVRKRPVXXXXXXXXXXXXXXXXXRFSGNFTTRNWETDQCW 119
             A YD  L V R+R V                       TTR WETDQCW
Sbjct:   120 AIYDSTLRVPRRR-VHAGAMGRSGRVYA----------TTRRWETDQCW 157

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query:    12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
             YD+LG+  S    EIK AY++LAR  HPDV   ++ E   + FI++  AY TLSDP +R 
Sbjct:    68 YDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRV 127

Query:    72 NYDRAL 77
              YDR L
Sbjct:   128 LYDRDL 133

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TIGR_CMR|CJE_1364 CJE_1364 "co-chaperone protein DnaJ" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 154 (59.3 bits), Expect = 9.3e-11, P = 9.3e-11
 Identities = 35/66 (53%), Positives = 43/66 (65%)

Query:    11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
             LY+ LG+  +A  +EIK AYRRLAR  HPD+     KE  A E F +I+AAY  LSD  K
Sbjct:     4 LYETLGVSKNASADEIKKAYRRLARKYHPDI----NKEKGAEEKFKEINAAYEILSDEKK 59

Query:    70 RANYDR 75
             RA YD+
Sbjct:    60 RAQYDQ 65

GO:0006457 "protein folding" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 149 (57.5 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query:    12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
             Y++LG+  +A   EIK AYR+LAR  HPDV   N+ + +A E F +I+ AY  LSDP KR
Sbjct:     6 YEILGVARNATPEEIKKAYRKLARKYHPDV---NKDDPNAAEKFKEINEAYEVLSDPEKR 62

Query:    71 ANYDR 75
             A YD+
Sbjct:    63 ARYDQ 67

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 37/65 (56%), Positives = 41/65 (63%)

Query:    12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
             Y  LG+  SA+  EIKAAYRRLAR  HPDV     KE  A E F +I AAY  LSD  KR
Sbjct:    77 YATLGVSKSANNKEIKAAYRRLARQYHPDV----NKEPGATEKFKEISAAYEVLSDEQKR 132

Query:    71 ANYDR 75
             A YD+
Sbjct:   133 ALYDQ 137

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

WB|WBGene00001038 dnj-20 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query:    12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
             Y +LG+  +A+ N+IK AYR+LA+  HPD    NQ +  ANE F  + +AY  LSD  KR
Sbjct:    26 YKILGVAKNANANQIKKAYRKLAKELHPD---RNQDDEMANEKFQDLSSAYEVLSDKEKR 82

Query:    71 ANYDR 75
             A YDR
Sbjct:    83 AMYDR 87

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

SGD|S000004080 XDJ1 "Chaperone with a role in facilitating mitochondrial protein import" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 149 (57.5 bits), Expect = 9.2e-10, P = 9.2e-10
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query:    11 LYDVLGIPVSADGNEIKAAYRRLARTCHPD-VVATNQKEMSANEFIKIHAAYSTLSDPHK 69
             LYDVLG+   A   EIK AYR+LA   HPD  V  + KE++  +F +I AAY  LSDP K
Sbjct:    10 LYDVLGVTRDATVQEIKTAYRKLALKHHPDKYVDQDSKEVNEIKFKEITAAYEILSDPEK 69

Query:    70 RANYD 74
             +++YD
Sbjct:    70 KSHYD 74

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IDA

GO:0030150 "protein import into mitochondrial matrix" evidence=IGI

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0051087 "chaperone binding" evidence=ISS

UNIPROTKB|G3MZ88 DNAJB9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query:    12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
             YD+LG+P SA   ++K A+ +LA   HPD    N+   +  +F +I  AY TLSD ++R 
Sbjct:    28 YDILGVPKSASERQVKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRK 84

Query:    72 NYD 74
              YD
Sbjct:    85 EYD 87

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_IV1432	hypothetical protein (158 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00770061	hypothetical protein (277 aa)			•						0.502
	fgenesh4_pg.C_LG_XIII000369	hypothetical protein (110 aa)			•						0.501
	gw1.1487.1.1	hypothetical protein (195 aa)			•						0.499
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.497
	gw1.VI.26.1	annotation not avaliable (325 aa)			•						0.496
	grail3.0261001401	hypothetical protein (124 aa)			•						0.496
	eugene3.02610008	hypothetical protein (132 aa)			•						0.496
	eugene3.00860035	hypothetical protein (705 aa)			•						0.495
	estExt_fgenesh4_pg.C_1500058	hypothetical protein (706 aa)			•						0.495
	fgenesh4_pg.C_LG_VIII000455	hypothetical protein (651 aa)			•						0.491

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-23
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-22
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-20
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-19
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	4e-19
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	8e-19
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-18
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-17
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-17
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-16
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	7e-16
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	7e-16
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	8e-16
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	8e-16
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-15
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	4e-15
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	8e-15
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-14
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	5e-14
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-13
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-13
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-12
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-11
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-11
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-11
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-11
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	3e-11
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	8e-11
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-10
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	3e-10
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	7e-10
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-07
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	9e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	8e-06
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	9e-06
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	4e-05
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	5e-05
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	4e-04
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	6e-04
PRK00294	173	PRK00294, hscB, co-chaperone HscB; Provisional	7e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.002
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 84.9 bits (211), Expect = 2e-23
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y++LG+P  A   EIK AYR+LA   HPD    +       +F +I+ AY  LSDP KR
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAA--EEKFKEINEAYEVLSDPEKR 59

Query: 71 ANYD 74
          A YD
Sbjct: 60 AIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 88.8 bits (221), Expect = 3e-22
 Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPH 68
            Y++LG+   A   EIK AYR+LA+  HPD    N  +  A E F +I+ AY  LSDP 
Sbjct: 5  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDR---NPGDKEAEEKFKEINEAYEVLSDPE 61

Query: 69 KRANYDR 75
          KRA YD+
Sbjct: 62 KRAAYDQ 68

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 84.6 bits (210), Expect = 1e-20
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++LG+   A   EIK AYR+LA+  HPD    N+ + +  +F +I+ AY  LSDP KRA
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDR---NKDKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 72 NYDR 75
           YD+
Sbjct: 60 QYDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 74.2 bits (183), Expect = 4e-19
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHK 69
            Y++LG+P  A  +EIK AYR+LA   HPD      KE +  +F +I+ AY  LSDP K
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPD-KNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 80.4 bits (199), Expect = 4e-19
 Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 21/104 (20%)

Query: 12  YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
           Y++LG+   AD +E+K AYRRLAR  HPDV     KE  A + F +I+ AY  LSDP  R
Sbjct: 6   YEILGVSRDADKDELKRAYRRLARKYHPDV----NKEPGAEDRFKEINRAYEVLSDPETR 61

Query: 71  ANYDRALFVVRKRPVSSFSSSSLSS----EPMGSMSRFSGNFTT 110
           A YD+            F  + +S       MG M  F+  F T
Sbjct: 62  ARYDQ------------FGEAGVSGAAGFPDMGDMGGFADIFET 93

Length = 374

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 79.8 bits (197), Expect = 8e-19
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLG+  SA  +EIK AYR+L++  HPD+   N++E +  +F +I  AY  LSD  KRA
Sbjct: 7  YEVLGVSKSASKDEIKKAYRKLSKKYHPDI---NKEEGADEKFKEISEAYEVLSDDQKRA 63

Query: 72 NYDR 75
           YD+
Sbjct: 64 QYDQ 67

Length = 376

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 72.2 bits (178), Expect = 2e-18
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSD 66
          YD+LG+P  A   EIK AYR+LA   HPD    N  +  A E F +I+ AY  LSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDK---NPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (189), Expect = 1e-17
 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y+VLG+  +A  +EIK AYR+LA   HPD    N  +  A E F +I  AY  LSDP KR
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPD---RNPGDKEAEEKFKEIKEAYEVLSDPQKR 63

Query: 71 ANYDR 75
          A YD+
Sbjct: 64 AAYDQ 68

Length = 371

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 75.7 bits (186), Expect = 2e-17
 Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++LG+  +A  +EIK+AYR+LA   HPD    N+++ +A +F +I+ AY+ LSD  KRA
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPD---RNKEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 72 NYDR 75
          +YDR
Sbjct: 62 HYDR 65

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
           YD LG+   A  +EIK AYR+L++  HPD+     KE  A E + ++  AY TLSDP K
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDI----NKEPGAEEKYKEVQEAYETLSDPQK 61

Query: 70 RANYDR 75
          RA YD+
Sbjct: 62 RAAYDQ 67

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y++LG+  +A   EIK AYRRLAR  HPD      K   A E F +I+ AY  LSDP KR
Sbjct: 6  YEILGVSRNATQEEIKKAYRRLARKYHPDF----NKNPEAEEKFKEINEAYQVLSDPEKR 61

Query: 71 ANYD 74
            YD
Sbjct: 62 KLYD 65

Length = 382

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 71.4 bits (175), Expect = 7e-16
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++LG+  +A   EIK AY+RL +  HPD    N+KE +  +F +I  AY  LSDP KRA
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKE-AEQKFKEIQEAYEVLSDPQKRA 65

Query: 72 NYDRALFVVRKRPVSSFSSSS 92
           YDR  +V  + P     S  
Sbjct: 66 MYDRFGYVGEQPPYQETESGG 86

Length = 369

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 70.2 bits (171), Expect = 7e-16
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 8   SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67
               Y++LG+P +A   EIK AYR+LA   HPD       +++  +F +I+ AY  LSDP
Sbjct: 5   LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN-PGDPKVAEEKFKEINEAYEILSDP 63

Query: 68  HKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRF 104
            +RA YD+          S   S++   E    ++  
Sbjct: 64  ERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGL 100

Length = 237

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 71.4 bits (175), Expect = 8e-16
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLG+  +AD  EIK AYR+LAR  HPDV   +++E +  +F +I  AY+ LSD  KR 
Sbjct: 8  YEVLGVDRNADKKEIKKAYRKLARKYHPDV---SEEEGAEEKFKEISEAYAVLSDDEKRQ 64

Query: 72 NYDR 75
           YD+
Sbjct: 65 RYDQ 68

Length = 378

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 71.4 bits (175), Expect = 8e-16
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y++LG+  +A   EIK AYRRLA+  HPD+   + KE    +F +I+ AY  LSDP KR
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQ-KFKEINEAYEILSDPQKR 64

Query: 71 ANYDR 75
          A YD+
Sbjct: 65 AQYDQ 69

Length = 386

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y +LG+  +A   EIK AYR+LAR  HPDV   N  E +  +F +I  AY  LSDP KR 
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPDV---NPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 72 NYD 74
            D
Sbjct: 63 IVD 65

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 69.3 bits (169), Expect = 4e-15
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 7  SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD 66
          S    Y+VLG+  +A  +E+K AYR+LAR  HPDV   N+   + ++F ++  AY TLSD
Sbjct: 2  SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDV---NKAPDAEDKFKEVKEAYDTLSD 58

Query: 67 PHKRANYDR 75
          P K+A+YD+
Sbjct: 59 PQKKAHYDQ 67

Length = 371

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 8e-15
 Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y VLG+P  A   EIK AYR+LAR  HPD    + K  +   F +I  AY  LSD  KR 
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAK--AEERFKEISEAYDVLSDEKKRK 69

Query: 72 NYD--RALF 78
           YD  R+LF
Sbjct: 70 EYDEARSLF 78

Length = 389

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y +LG+P +A  +EIK A+++LAR  HPDV   N+   +  +F +I+ AY+ LSDP KR 
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDV---NKSPGAEEKFKEINEAYTVLSDPEKRR 63

Query: 72 NYDR 75
           YD 
Sbjct: 64 IYDT 67

Length = 291

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 66.8 bits (162), Expect = 5e-14
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLGI   AD  EIK A+R+LA+  HPD    N+   +A+ F +I+ A   LS+P KRA
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPD---RNKAPDAASIFAEINEANDVLSNPKKRA 61

Query: 72 NYDR 75
          NYD+
Sbjct: 62 NYDK 65

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 65.3 bits (159), Expect = 1e-13
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 6  SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTL 64
          +++   Y++LG+   A   +IK AYR+LA   HPD      KE  A E F +I  AY+ L
Sbjct: 2  ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPD----KNKEPDAEEKFKEISEAYAVL 57

Query: 65 SDPHKRANYDR 75
          SD  KRA YDR
Sbjct: 58 SDAEKRAQYDR 68

Length = 377

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 65.2 bits (159), Expect = 1e-13
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y+VLG+   A  +EIK A+R+LA   HPD    N+    A E F +I+ AY  LSDP K+
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPD---KNKGNKEAEEKFKEINEAYQVLSDPQKK 63

Query: 71 ANYDR 75
          A YD+
Sbjct: 64 AQYDQ 68

Length = 380

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y  LG+   A   EIK AYR+LAR  HPD    N  + +A E F  +  A+  LSDP KR
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPD---ANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 71 ANYD--RALF 78
            YD  R LF
Sbjct: 69 KEYDETRRLF 78

Length = 392

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHA-AYSTLSDPHKR 70
          Y++LG+   A   EIK +YR+LA   HPD    N  +  A E  K  A AY  LSDP KR
Sbjct: 7  YEILGVTRDASEEEIKKSYRKLAMKYHPD---RNPGDKEAEELFKEAAEAYEVLSDPKKR 63

Query: 71 ANYDR 75
            YD+
Sbjct: 64 GIYDQ 68

Length = 366

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLG+  SAD +EIK AYR+LA   HPD    N++  +   F +++ AY  LS+  KR 
Sbjct: 6  YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKE--AEEHFKEVNEAYEVLSNDDKRR 63

Query: 72 NYDR 75
           YD+
Sbjct: 64 RYDQ 67

Length = 397

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y ++G+  + D   IK AYRRLAR  HPDV     KE  A   F ++  A+  LSD  +R
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDV----SKEPDAEARFKEVAEAWEVLSDEQRR 62

Query: 71 ANYDR 75
          A YD+
Sbjct: 63 AEYDQ 67

Length = 306

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y +LG+  +A   EIK AYR+LA   HPD    N  +  A + F ++  AY  LSD  KR
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPD---KNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 71 ANYDR 75
           +YDR
Sbjct: 61 ESYDR 65

Length = 391

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y +LG+  +A   +IK A+R LA+  HPD+   N+ E +  +F +I  AY  LSDP KR 
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAE-AEEKFKEISEAYEVLSDPQKRR 64

Query: 72 NYDR 75
           YD+
Sbjct: 65 QYDQ 68

Length = 365

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHA-AYSTLSDPHKR 70
          Y+VLG+   A  +EIK AYR+LA   HPD    N     A +  K  A AY  L D  KR
Sbjct: 7  YEVLGVSRDASEDEIKKAYRKLALQYHPD---RNPDNPEAEQKFKEAAEAYEVLRDAEKR 63

Query: 71 ANYDR 75
          A YDR
Sbjct: 64 ARYDR 68

Length = 373

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 7  SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD 66
          S  S YD+LG+  SA+  EIK+AYR+LA   HPD    N++  S  +F +   AY  L D
Sbjct: 2  SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKE--SEEKFKEATEAYEILRD 59

Query: 67 PHKRANYDR 75
          P KR  YD+
Sbjct: 60 PKKRQAYDQ 68

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 57.3 bits (138), Expect = 8e-11
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 8  SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67
          S   Y +LG+  +A   ++K AY +LA+  HPD       E    +F +I+AAY  L D 
Sbjct: 2  SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE---KKFKEINAAYDVLKDE 58

Query: 68 HKRANYDR 75
           KRA YDR
Sbjct: 59 QKRAAYDR 66

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 8  SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67
          +  LY+VL +      +EIK AYR+LA   HPD      K     +F +I  AY  LSDP
Sbjct: 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPD------KGGDPEKFKEISRAYEVLSDP 80

Query: 68 HKRANYDRA 76
           KR  YD  
Sbjct: 81 EKRKIYDEY 89

Length = 421

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHA-AYSTLSDPHKR 70
          Y+VLG+  +A  +EIK AYR+ A   HPD    N  +  A E  K  A AY  LSDP KR
Sbjct: 8  YEVLGVSKTATVDEIKKAYRKKAIQYHPD---KNPGDKEAEEKFKEAAEAYDVLSDPDKR 64

Query: 71 ANYDR 75
          + YD+
Sbjct: 65 SRYDQ 69

Length = 386

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLG+  +A   EI+ AYR+LA+  HPD+   N+   + ++ ++I+ A   L D  KR 
Sbjct: 7  YEVLGVSKTASEQEIRQAYRKLAKQYHPDL---NKSPDAHDKMVEINEAADVLLDKDKRK 63

Query: 72 NYDR 75
           YD+
Sbjct: 64 QYDQ 67

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 54.6 bits (131), Expect = 7e-10
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 16/98 (16%)

Query: 12  YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
           Y++LG+   A  +EIK AYR++A   HPD    N++  + + F +   AY  L D +KRA
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKE--AESIFKEATEAYEVLIDDNKRA 63

Query: 72  NYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFT 109
            YDR            F  ++   E  G    FSG F+
Sbjct: 64  QYDR------------FGHTAF--EGGGGFEGFSGGFS 87

Length = 365

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHK 69
          S Y++L +   ++   IK +YR+LA   HPD  A +++  +  +F  I+ AY  LSD  K
Sbjct: 4  SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKE--AEEKFKLINEAYGVLSDEKK 61

Query: 70 RANYDR 75
          RA YDR
Sbjct: 62 RALYDR 67

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 12  YDVLGIPVSADGNEIKAAYRRLARTCHPDVVA---TNQKEMSANEFIKIHAAYSTLSDPH 68
           Y++LGI       +IK  YR L+   HPD         +     ++  I  AY  L+D  
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 69  KRANY 73
           +R NY
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 16/70 (22%)

Query: 4   AASSSSSL---YDVLGIPVSADGNEIKAAYRRLARTCHPD-VVATNQ---KEM--SANEF 54
            A    +L   Y VLG+  S D  EIK AYR+L    HPD +VA  +    EM   A E 
Sbjct: 192 QAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVA--KGLPPEMMEMAKE- 248

Query: 55  IK---IHAAY 61
            K   I AAY
Sbjct: 249 -KAQEIQAAY 257

Length = 267

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.9 bits (100), Expect = 9e-06
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 12  YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
           YD+LG+ V+AD  EI   Y +LA   +P   + N+     ++F KI+ AY  L D  K+ 
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNE---GFHKFKKINEAYQILGDIDKKK 632

Query: 72  NYDR 75
            Y++
Sbjct: 633 MYNK 636

Length = 1136

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 22 DGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKRANY 73
          D + ++  YR+L    HPD     Q++++A++    ++ AY TL DP +RA Y
Sbjct: 4  DQSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 16 GIPVS--ADGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAAYSTLSDPHKR 70
          G+P     D   + + Y+ L R  HPD  A     ++ ++  +   I+ AY TL  P KR
Sbjct: 8  GLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKR 67

Query: 71 ANY 73
          A Y
Sbjct: 68 AEY 70

Length = 171

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 6  SSSSSLYDVLGIPVSADGNE--IKAAYRRLARTCHPD 40
            S  L D+LG+P SA GN   ++ AY R     HPD
Sbjct: 2  EESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPD 38

Length = 153

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 17/81 (20%)

Query: 4  AASSSSSLYDVLGIPV--SADGNEIKAAYRRLARTCHPDVVATN---QKEMS------AN 52
            S     + + G+P   + D   + AAYR +    HPD  A     +K ++      AN
Sbjct: 1  MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRAN 60

Query: 53 EFIKIHAAYSTLSDPHKRANY 73
          E      AY TL DP KRA Y
Sbjct: 61 E------AYQTLRDPLKRARY 75

Length = 176

>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 22 DGNEIKAAYRRLARTCHPDVVA---TNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL 77
          D +++   YR LAR  HPD  A     ++ ++      ++ AY TL  P +RA Y  AL
Sbjct: 19 DLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77

Length = 173

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 11  LYDVLGIP---VSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP 67
           LY +LG+      A   +I  A+++     HPD  A    +     F  I  A   L D 
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104

Query: 68  HKRANYDRALFV 79
             R  YD   F 
Sbjct: 105 KLRLQYDSNDFD 116

Length = 379

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 11 LYDVLGIPVSADGNE--IKAAYRRLARTCHPD 40
          L D+LG+P++A GN   ++ AY R  +  HPD
Sbjct: 13 LMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPD 44

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.94
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.93
PRK14288	369	chaperone protein DnaJ; Provisional	99.87
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.87
PRK14279	392	chaperone protein DnaJ; Provisional	99.87
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.86
PRK14296	372	chaperone protein DnaJ; Provisional	99.85
PRK14286	372	chaperone protein DnaJ; Provisional	99.85
PRK14282	369	chaperone protein DnaJ; Provisional	99.84
PRK14295	389	chaperone protein DnaJ; Provisional	99.84
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.83
PRK14283	378	chaperone protein DnaJ; Provisional	99.83
PRK14287	371	chaperone protein DnaJ; Provisional	99.83
PRK14285	365	chaperone protein DnaJ; Provisional	99.83
PRK14294	366	chaperone protein DnaJ; Provisional	99.83
PRK14277	386	chaperone protein DnaJ; Provisional	99.83
PRK14291	382	chaperone protein DnaJ; Provisional	99.83
PRK14301	373	chaperone protein DnaJ; Provisional	99.82
PRK14297	380	chaperone protein DnaJ; Provisional	99.82
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14299	291	chaperone protein DnaJ; Provisional	99.82
PRK14276	380	chaperone protein DnaJ; Provisional	99.82
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14298	377	chaperone protein DnaJ; Provisional	99.82
PRK10767	371	chaperone protein DnaJ; Provisional	99.82
PRK14284	391	chaperone protein DnaJ; Provisional	99.81
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK14280	376	chaperone protein DnaJ; Provisional	99.81
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK14278	378	chaperone protein DnaJ; Provisional	99.81
PRK14281	397	chaperone protein DnaJ; Provisional	99.81
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14289	386	chaperone protein DnaJ; Provisional	99.8
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.8
PRK14290	365	chaperone protein DnaJ; Provisional	99.79
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.79
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.78
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.78
PRK14300	372	chaperone protein DnaJ; Provisional	99.77
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.77
PRK14292	371	chaperone protein DnaJ; Provisional	99.77
PRK14293	374	chaperone protein DnaJ; Provisional	99.77
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.75
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK05014	171	hscB co-chaperone HscB; Provisional	99.73
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.72
PRK01356	166	hscB co-chaperone HscB; Provisional	99.71
PRK00294	173	hscB co-chaperone HscB; Provisional	99.71
PRK03578	176	hscB co-chaperone HscB; Provisional	99.7
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.69
PHA03102	153	Small T antigen; Reviewed	99.65
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.64
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.54
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.53
PTZ00100	116	DnaJ chaperone protein; Provisional	99.53
PRK01773	173	hscB co-chaperone HscB; Provisional	99.52
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.5
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.49
PHA02624	647	large T antigen; Provisional	99.44
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.39
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.34
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.11
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.7
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.65
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.55
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.41
KOG0431	453	consensus Auxilin-like protein and related protein	97.88
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.55
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.38
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.18
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	93.78
PF13446	62	RPT: A repeated domain in UCH-protein	93.09
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	91.07
KOG0724	335	consensus Zuotin and related molecular chaperones	90.15
KOG3442	132	consensus Uncharacterized conserved protein [Funct	89.38

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.7e-27  Score=178.29  Aligned_cols=73  Identities=38%  Similarity=0.618  Sum_probs=66.7

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhh
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVR   81 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~   81 (119)
                      ..+|||+||||+++|+.+|||+|||+|+++||||+++.  .+++.++|+.|++||+||+||++|+.||+......
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~   74 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF   74 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence            56899999999999999999999999999999999775  47799999999999999999999999998765443

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-25  Score=169.08  Aligned_cols=76  Identities=41%  Similarity=0.630  Sum_probs=69.6

Q ss_pred             CCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            2 AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         2 ~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      +......+|||+||||+++|+..+||+|||+|++++|||||+++  +.|.+.|+.|+.||+||+||.+|+.||+.+..
T Consensus         9 ~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~YD~~GEe   84 (336)
T KOG0713|consen    9 AEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHYDTYGEE   84 (336)
T ss_pred             hhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence            34456679999999999999999999999999999999999876  67999999999999999999999999998754

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.8e-22  Score=156.19  Aligned_cols=69  Identities=38%  Similarity=0.542  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+  +.+.++|+.|++||+||+||.+|+.||+...
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            47999999999999999999999999999999997643  4578899999999999999999999999643

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.5e-22  Score=151.57  Aligned_cols=69  Identities=42%  Similarity=0.631  Sum_probs=63.4

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      .+..+|+||||+++|+.+|||+|||+|+++|||||+++     +.++|+.|.+||+||+||++|..||+.....
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~   70 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEG   70 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            35789999999999999999999999999999999875     7789999999999999999999999977543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3e-22  Score=155.93  Aligned_cols=74  Identities=36%  Similarity=0.569  Sum_probs=65.8

Q ss_pred             CCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            2 AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         2 ~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      +..+....|||+||||+++|+.++||+|||+|++++|||+++.+  +.+.++|+.|++||+||+||.+|+.||+..
T Consensus         2 ~~~~~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          2 AQREWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             CchhhcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            33444568999999999999999999999999999999997643  567899999999999999999999999965

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.86  E-value=1.1e-21  Score=116.65  Aligned_cols=64  Identities=42%  Similarity=0.807  Sum_probs=59.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 033459           10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYD   74 (119)
Q Consensus        10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD   74 (119)
                      |||+||||+++++.++||++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999977544 568899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=9e-22  Score=152.38  Aligned_cols=68  Identities=34%  Similarity=0.591  Sum_probs=62.6

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|+++||||++++   +.+.++|+.|++||+||+||.+|+.||+...
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            4799999999999999999999999999999999752   4578999999999999999999999999653

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.6e-21  Score=150.99  Aligned_cols=69  Identities=43%  Similarity=0.649  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+  +.+.++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            47999999999999999999999999999999997542  5578999999999999999999999998643

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2.8e-21  Score=149.50  Aligned_cols=70  Identities=41%  Similarity=0.721  Sum_probs=63.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+ ...+.++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~   72 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY   72 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence            47999999999999999999999999999999997643 24578999999999999999999999998543

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.3e-21  Score=149.99  Aligned_cols=74  Identities=42%  Similarity=0.663  Sum_probs=65.3

Q ss_pred             CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      |+-......|||+||||+++|+.++||+|||+|++++|||+++.+  +.+.++|+.|++||+||+||.+|+.||+.
T Consensus         1 ~~~~~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   74 (389)
T PRK14295          1 MSTKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKEYDEA   74 (389)
T ss_pred             CCchhccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence            344444567999999999999999999999999999999997643  45789999999999999999999999983

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.83  E-value=5.1e-21  Score=150.06  Aligned_cols=67  Identities=40%  Similarity=0.588  Sum_probs=60.8

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      +...|||+||||+++|+.++||+|||+|++++|||++++      .++|++|++||+||+||.+|..||....
T Consensus        25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            346799999999999999999999999999999999642      4799999999999999999999998653

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1e-20  Score=146.70  Aligned_cols=68  Identities=46%  Similarity=0.699  Sum_probs=62.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++   +.+.++|+.|++||+||+|+.+|..||+...
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            5799999999999999999999999999999999753   5688999999999999999999999999543

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.2e-20  Score=146.08  Aligned_cols=68  Identities=43%  Similarity=0.710  Sum_probs=62.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++   .+.+.++|+.|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~---~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~   70 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK---APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH   70 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC---ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence            469999999999999999999999999999999965   24578899999999999999999999999643

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.2e-20  Score=145.78  Aligned_cols=69  Identities=38%  Similarity=0.582  Sum_probs=62.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.+  +.+.++|++|++||+||+|+.+|..||+...
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~   70 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQYDRFGH   70 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence            36999999999999999999999999999999997643  5578899999999999999999999999643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.5e-20  Score=145.38  Aligned_cols=70  Identities=36%  Similarity=0.572  Sum_probs=63.5

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ...|||+||||+++|+.++||+|||+|++++|||+++..  +.+.++|+.|++||+||+||.+|+.||+...
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~   71 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGIYDQYGH   71 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence            357999999999999999999999999999999997643  4578899999999999999999999999653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.6e-20  Score=145.95  Aligned_cols=68  Identities=43%  Similarity=0.726  Sum_probs=62.6

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++..  +.+.++|+.|++||+||+|+.+|..||+..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   71 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQYDQFG   71 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence            36999999999999999999999999999999997643  457889999999999999999999999954

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.2e-20  Score=146.65  Aligned_cols=68  Identities=43%  Similarity=0.684  Sum_probs=62.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   +.+.++|+.|++||+||+||.+|..||+...
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            4799999999999999999999999999999999763   4578899999999999999999999999654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=145.54  Aligned_cols=69  Identities=41%  Similarity=0.613  Sum_probs=63.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.+  +.+.++|+.|++||+||+||.+|..||+...
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~   71 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGH   71 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence            47999999999999999999999999999999997643  4578899999999999999999999998653

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=145.85  Aligned_cols=68  Identities=43%  Similarity=0.683  Sum_probs=62.6

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++..  +.+.++|+.|++||+||+||.+|..||+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G   70 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQYDQFG   70 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence            36999999999999999999999999999999997643  558899999999999999999999999864

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.6e-20  Score=137.93  Aligned_cols=68  Identities=47%  Similarity=0.726  Sum_probs=63.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ..|+|+||||+++++.++|||+||+|++++|||+++++  +++..+|+.||+||+||+||.+|..||..+
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g   97 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYG   97 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence            45799999999999999999999999999999998866  668899999999999999999999999974

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.4e-20  Score=140.32  Aligned_cols=68  Identities=41%  Similarity=0.668  Sum_probs=62.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++   .+.+.++|+.|++||++|+||.+|..||+...
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~---~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK---SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC---ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            479999999999999999999999999999999975   25578899999999999999999999999654

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.8e-20  Score=145.43  Aligned_cols=68  Identities=40%  Similarity=0.684  Sum_probs=62.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   +.+.++|+.|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   70 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA   70 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence            4799999999999999999999999999999999763   4578899999999999999999999998543

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.2e-20  Score=145.53  Aligned_cols=77  Identities=43%  Similarity=0.635  Sum_probs=68.5

Q ss_pred             CCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            2 AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVA-TNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         2 ~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~-~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      +..-..+.+||.+|+|+++|+.+|||+|||++++.+||||+. +..+..+++.|++|.+||+||+||.+|+.||....
T Consensus         2 de~e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~   79 (546)
T KOG0718|consen    2 DEAELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE   79 (546)
T ss_pred             CccccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence            344455669999999999999999999999999999999998 44567788999999999999999999999998654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.4e-20  Score=144.62  Aligned_cols=68  Identities=40%  Similarity=0.626  Sum_probs=62.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   +.+.++|+.|++||+||+||.+|+.||+...
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH   71 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence            4699999999999999999999999999999999752   4578899999999999999999999999643

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3.6e-20  Score=143.35  Aligned_cols=69  Identities=42%  Similarity=0.676  Sum_probs=62.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++..  +.+.++|++|++||++|+|+.+|..||+...
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~   71 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH   71 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence            47999999999999999999999999999999997633  4578899999999999999999999998543

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.9e-20  Score=144.08  Aligned_cols=68  Identities=38%  Similarity=0.599  Sum_probs=62.3

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .|||+||||+++|+.++||+|||+|++++|||++++.  +.+.++|+.|++||+||+|+.+|+.||+...
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   68 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRESYDRYGK   68 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence            3899999999999999999999999999999997643  5578899999999999999999999999653

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.2e-20  Score=143.17  Aligned_cols=81  Identities=38%  Similarity=0.542  Sum_probs=71.7

Q ss_pred             CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhcCC
Q 033459            5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRP   84 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~~~   84 (119)
                      .+..+.||+||||.++++..+||++||+|++++|||++++. .+.+.++|+.|+.||+|||||..|+.||.....+....
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            34567899999999999999999999999999999998754 57799999999999999999999999999877666554


Q ss_pred             CC
Q 033459           85 VS   86 (119)
Q Consensus        85 ~~   86 (119)
                      .+
T Consensus        83 ~s   84 (508)
T KOG0717|consen   83 NS   84 (508)
T ss_pred             CC
Confidence            44

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.8e-20  Score=143.50  Aligned_cols=67  Identities=43%  Similarity=0.697  Sum_probs=61.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   +.+.++|++|++||+||+||.+|+.||+..
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   69 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQYDQFG   69 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence            3699999999999999999999999999999999753   457889999999999999999999999954

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.9e-20  Score=137.84  Aligned_cols=71  Identities=38%  Similarity=0.574  Sum_probs=66.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      ..|||.||||..+++..+|+++|+..++++||||||+++.  +.+.|+.|.+||+||+|+..|..||..+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~--A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ--AAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            6799999999999999999999999999999999998754  9999999999999999999999999977643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.8e-20  Score=143.03  Aligned_cols=66  Identities=44%  Similarity=0.653  Sum_probs=61.6

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      .|||+||||+++|+.++||+|||+|++++|||+++   .+.+.++|+.|++||+||+||.+|..||+..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G   68 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGG   68 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC---cHHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence            69999999999999999999999999999999975   2567889999999999999999999999854

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.2e-20  Score=143.63  Aligned_cols=69  Identities=41%  Similarity=0.640  Sum_probs=62.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++..  ..+.++|+.|++||+||+|+.+|..||+...
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            36999999999999999999999999999999997643  4578899999999999999999999998654

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.1e-19  Score=136.53  Aligned_cols=70  Identities=39%  Similarity=0.591  Sum_probs=64.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      ..|||+||||+++|+..|||+||++|++++|||.+.+   ..+.++|++|.+||+||+|+.+|..||..+...
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3399999999999999999999999999999998654   378999999999999999999999999987754

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.7e-19  Score=140.24  Aligned_cols=69  Identities=38%  Similarity=0.598  Sum_probs=63.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++..  +.+.++|+.|++||++|+||.+|+.||....
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            57999999999999999999999999999999997643  4588899999999999999999999999643

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.80  E-value=2.2e-19  Score=105.27  Aligned_cols=59  Identities=44%  Similarity=0.747  Sum_probs=54.2

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCch
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPH   68 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~   68 (119)
                      +|||+||||+++++.++||++|+++++.+|||++... .+.+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999997643 5678899999999999999985

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.4e-19  Score=139.87  Aligned_cols=68  Identities=40%  Similarity=0.690  Sum_probs=62.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      .|||+||||+++|+.++||+|||+|++++|||+++.+ ...+.++|+.|++||+||+|+.+|..||...
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G   70 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTG   70 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence            6999999999999999999999999999999997643 2358899999999999999999999999854

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.79  E-value=1.6e-19  Score=138.95  Aligned_cols=66  Identities=42%  Similarity=0.718  Sum_probs=60.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459           10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus        10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      |||+||||+++|+.++||+|||+|++++|||+++   .+.+.++|+.|++||+||+|+.+|..||....
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~   66 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK---DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH   66 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence            7999999999999999999999999999999975   34578899999999999999999999998543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2e-19  Score=129.84  Aligned_cols=72  Identities=38%  Similarity=0.575  Sum_probs=66.7

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      +...|+|+||||.++|+..+|++||++|++++|||+++......+...|++|+.||.||+|..+|+.||...
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG   82 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG   82 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence            455699999999999999999999999999999999886667789999999999999999999999999854

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.78  E-value=2.7e-19  Score=135.44  Aligned_cols=67  Identities=37%  Similarity=0.632  Sum_probs=61.6

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ..|||+||||+++++.++||+|||+|++++|||++..   ..+.++|+.|++||++|+|+.+|..||...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            3699999999999999999999999999999999642   457889999999999999999999999854

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.78  E-value=9.1e-19  Score=100.83  Aligned_cols=55  Identities=44%  Similarity=0.739  Sum_probs=51.0

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCC
Q 033459           10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD   66 (119)
Q Consensus        10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d   66 (119)
                      |||+||||+++++.++||++|+++++++|||++...  ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999997643  6688999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.3e-19  Score=137.46  Aligned_cols=66  Identities=38%  Similarity=0.656  Sum_probs=61.0

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      .|||+||||+++|+.++||+|||+|++++|||+++.   ..+.++|+.|++||++|+|+.+|..||+..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G   68 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFG   68 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence            699999999999999999999999999999999752   347789999999999999999999999954

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.77  E-value=8.7e-19  Score=133.60  Aligned_cols=74  Identities=38%  Similarity=0.600  Sum_probs=67.5

Q ss_pred             CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .+..+|||+||||.++|+..||.+|||+++.++|||-+.+.+ +..+.++|..|..|-+||+||++|+.||....
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD  464 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED  464 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence            467899999999999999999999999999999999887554 66788999999999999999999999998643

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.7e-19  Score=135.97  Aligned_cols=67  Identities=43%  Similarity=0.685  Sum_probs=61.8

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .|||+||||+++|+.++||+|||+|++++|||+++   ...+.++|+.|++||+||+||.+|+.||....
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~---~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~   68 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK---EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT   68 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC---ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence            59999999999999999999999999999999975   24578899999999999999999999999543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.4e-19  Score=136.22  Aligned_cols=68  Identities=44%  Similarity=0.716  Sum_probs=61.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   ..+.++|+.|++||+||+||.+|+.||....
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            3699999999999999999999999999999999753   4477899999999999999999999998543

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.75  E-value=2.2e-18  Score=143.80  Aligned_cols=69  Identities=33%  Similarity=0.521  Sum_probs=62.9

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ...+||+||||+++|+..+||+|||+|++++|||++++.   .+.++|+.|++||+||+||.+|..||....
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~  639 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGY  639 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence            457999999999999999999999999999999998753   477899999999999999999999998543

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.7e-18  Score=122.08  Aligned_cols=75  Identities=32%  Similarity=0.451  Sum_probs=65.7

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhcC
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKR   83 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~~   83 (119)
                      ..-|+||||||+++++.+|||+|||+|++++||||++..  ++.++.|..|++||+.|+|+..|+.|........++
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq  171 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ  171 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence            456999999999999999999999999999999997643  567788999999999999999999999966544433

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.73  E-value=1.3e-17  Score=117.03  Aligned_cols=72  Identities=29%  Similarity=0.516  Sum_probs=62.3

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            9 SSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         9 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      .|||+||||++.  ++..+|+++|+++++++|||++....   ...+.+.+..||+||++|+||.+|..|+..+.+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            489999999996  78899999999999999999986432   2346778999999999999999999999877643

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.5e-17  Score=117.66  Aligned_cols=70  Identities=43%  Similarity=0.727  Sum_probs=63.9

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      ....+||+||||+++++..+|+++||++++++|||+++.... .+.+.|..|++||++|+|+..|..||..
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            445799999999999999999999999999999999875433 5889999999999999999999999985

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.71  E-value=2e-17  Score=115.60  Aligned_cols=71  Identities=31%  Similarity=0.405  Sum_probs=61.0

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-ccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            9 SSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATN-QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         9 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      .|||+||||++.  ++..+|+++|+++++++|||++... ....+.+.+..|++||+||+||.+|+.|+..+.+
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            589999999987  7899999999999999999997632 2233456788999999999999999999987754

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.71  E-value=3.1e-17  Score=115.20  Aligned_cols=75  Identities=28%  Similarity=0.440  Sum_probs=65.5

Q ss_pred             CCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            6 SSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      +...|||++|||++.  ++..+|+++|+++++++|||++....   +..+.+.+..||+||+||+||.+|+.|+..+.+.
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~   80 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH   80 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            457899999999997  77899999999999999999986432   3456778999999999999999999999988753

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.70  E-value=4.6e-17  Score=114.68  Aligned_cols=75  Identities=33%  Similarity=0.486  Sum_probs=63.3

Q ss_pred             CCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            6 SSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      +...|||+||||++.  ++..+|+++|+++++++|||++....   +..+.+.+..||+||++|+||.+|..|...+.+.
T Consensus         3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~   82 (176)
T PRK03578          3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV   82 (176)
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence            345799999999985  68999999999999999999987432   2234566799999999999999999999977744

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.69  E-value=4.4e-17  Score=133.55  Aligned_cols=67  Identities=45%  Similarity=0.664  Sum_probs=61.7

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .|||+||||+++|+..+||++||+|++++|||++..   +.+.++|+.|++||++|+||.+|..||....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            699999999999999999999999999999999654   4577899999999999999999999998653

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PHA03102 Small T antigen; Reviewed

Probab=99.65  E-value=1e-16  Score=110.31  Aligned_cols=64  Identities=25%  Similarity=0.352  Sum_probs=57.7

Q ss_pred             ccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ...+|+||||+++|  +..+||+|||++++++|||+.+      ..++|+.|++||++|+|+.+|..||...
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg------~~e~~k~in~Ay~~L~d~~~r~~yd~~g   69 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG------DEEKMKELNTLYKKFRESVKSLRDLDGE   69 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc------hhHHHHHHHHHHHHHhhHHHhccccccC
Confidence            34689999999999  9999999999999999999943      3468999999999999999999999854

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.2e-16  Score=122.17  Aligned_cols=69  Identities=29%  Similarity=0.488  Sum_probs=64.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      .+|+|.+|||+.+++.++||+.||+++..+||||+.   .+.+.+.|+.|+.||++|+|+.+|..||..+..
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~---~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM---IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC---ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            579999999999999999999999999999999964   688999999999999999999999999997753

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.5e-15  Score=109.41  Aligned_cols=70  Identities=43%  Similarity=0.641  Sum_probs=63.4

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .+..|+|+||||.++++..+|.+|||+|++++|||++.+.+   ..+.|..|..||++|.|...|..||-.+.
T Consensus        30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e---~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE---SKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch---hhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            45679999999999999999999999999999999987543   44899999999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=6.9e-15  Score=113.99  Aligned_cols=73  Identities=38%  Similarity=0.607  Sum_probs=66.6

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      +...|||.||||.+.++..+||++||++++.+|||++..+ +.++..+|+.|-+||.||+||.+|..||....-
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl  442 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL  442 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence            5578999999999999999999999999999999998866 566888999999999999999999999986543

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.53  E-value=1.1e-14  Score=108.51  Aligned_cols=61  Identities=36%  Similarity=0.577  Sum_probs=53.2

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----ccHHHHHHHHHHHHHHHHcCC
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN-----QKEMSANEFIKIHAAYSTLSD   66 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~~f~~i~~Ay~~L~d   66 (119)
                      ....++|+||||+++++.++||++||+|++++|||++...     ..+.+.++|+.|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            3446999999999999999999999999999999997532     235688999999999999984

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.53  E-value=8.9e-15  Score=96.29  Aligned_cols=54  Identities=30%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS   65 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~   65 (119)
                      +...++|+||||+++++.++||++||+|++++|||+.      +..+.|.+|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg------Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG------GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHHh
Confidence            4457999999999999999999999999999999983      23457899999999985

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.52  E-value=3.1e-14  Score=100.04  Aligned_cols=70  Identities=24%  Similarity=0.396  Sum_probs=62.5

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            9 SSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         9 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .|||++|||++.  ++...|+++|+.|.+.+|||++....   +..+.+....||+||.+|+||.+|+.|-..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999987  89999999999999999999987442   34566788999999999999999999999877

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=2e-14  Score=105.94  Aligned_cols=70  Identities=43%  Similarity=0.639  Sum_probs=63.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|+|+||+|.++++..+|++||+++++++|||+++.. ...+..+|.+|.+||++|+|+.+|..||....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46899999999999999999999999999999998766 55666689999999999999999999999765

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.49  E-value=2.8e-14  Score=111.54  Aligned_cols=77  Identities=26%  Similarity=0.391  Sum_probs=68.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhcCC
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVAT---NQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRP   84 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~~~   84 (119)
                      .-|+||||||+.+++..+||++||+|+.++||||.+.   ..+...++.+..|++||..|+|...|+.|-.......++.
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQh  176 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQH  176 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCcc
Confidence            3589999999999999999999999999999999885   5667788999999999999999999999998766555443

>PHA02624 large T antigen; Provisional

Probab=99.44  E-value=2.6e-13  Score=110.09  Aligned_cols=61  Identities=28%  Similarity=0.465  Sum_probs=55.7

Q ss_pred             CccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459            7 SSSSLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANY   73 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   73 (119)
                      +..++|+||||+++|  +..+||+|||++++++|||+.      +..++|+.|++||++|+|+.+|..|
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg------Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG------GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC------CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            346899999999999  999999999999999999983      2357899999999999999999998

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.39  E-value=1.2e-12  Score=90.76  Aligned_cols=61  Identities=30%  Similarity=0.480  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459           20 SADGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus        20 ~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      ..+..+|+++|+++++++|||++...   .+..+.+.+..||+||++|+||.+|+.|+..+.+.
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~   65 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI   65 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            35789999999999999999997643   23457788999999999999999999999988743

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.8e-12  Score=91.26  Aligned_cols=71  Identities=24%  Similarity=0.351  Sum_probs=62.1

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR   75 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~   75 (119)
                      ++-.+-|+|+||.|.|.++.++||+.||+|++.+|||+++++ .+.+...|..|.+||..|-|+..|..-+.
T Consensus        48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd-~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD-AERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc-HHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            344677999999999999999999999999999999999865 46688999999999999999986665443

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=5.9e-11  Score=88.14  Aligned_cols=71  Identities=28%  Similarity=0.351  Sum_probs=60.9

Q ss_pred             ccCccccccCCC---CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPV---SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~---~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|+|.+|||+.   .++..+|.++.++.+.+||||+.......+....|..|+.||+||+|+.+|..||.--.
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df  115 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF  115 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence            368999999985   48889999999999999999997533344567889999999999999999999997543

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.9e-08  Score=73.55  Aligned_cols=54  Identities=33%  Similarity=0.640  Sum_probs=48.0

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHH-HcC
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYS-TLS   65 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~-~L~   65 (119)
                      ..+|.||||..+|+.++|+.+|..|++.+|||...   .+...++|.+|.+||. ||+
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs---~~adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS---EEADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC---ccccHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999743   3556789999999999 777

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.2e-08  Score=63.85  Aligned_cols=55  Identities=33%  Similarity=0.300  Sum_probs=45.0

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP   67 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~   67 (119)
                      ..+.-=.||||+++++.+.||+++|+++..+|||+-      +.--.-..||+|+++|...
T Consensus        54 sr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G------GSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   54 SRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG------GSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             chHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCC------CCHHHHHHHHHHHHHHhcc
Confidence            334445699999999999999999999999999983      3344567899999999754

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.1e-07  Score=81.38  Aligned_cols=56  Identities=25%  Similarity=0.411  Sum_probs=47.0

Q ss_pred             CCCccCccccccCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459            5 ASSSSSLYDVLGIPVS----ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS   65 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~   65 (119)
                      .++..+-|+||.|+.+    ...+.||++|++|+.+|||||+|     +-.+.|..|++||+.|+
T Consensus      1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-----hHHHHHHHHHHHHHHHH
Confidence            3455678999999854    45588999999999999999975     24678999999999998

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=5.3e-07  Score=62.03  Aligned_cols=77  Identities=27%  Similarity=0.490  Sum_probs=62.2

Q ss_pred             CCCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            5 ASSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      .....+||.++|....  .+++.++..|....+++|||+....   ....+.+....|++||.+|.||..|+.|-..+.+
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            4566799999987654  6777788899999999999985411   2235778899999999999999999999988876


Q ss_pred             hh
Q 033459           80 VR   81 (119)
Q Consensus        80 ~~   81 (119)
                      ..
T Consensus        84 ~e   85 (168)
T KOG3192|consen   84 QE   85 (168)
T ss_pred             CC
Confidence            33

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.88  E-value=1.9e-05  Score=63.11  Aligned_cols=51  Identities=22%  Similarity=0.395  Sum_probs=37.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----ccHHHHHHHHHHHHHHHHcC
Q 033459           15 LGIPVSADGNEIKAAYRRLARTCHPDVVATN-----QKEMSANEFIKIHAAYSTLS   65 (119)
Q Consensus        15 Lgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~~f~~i~~Ay~~L~   65 (119)
                      ++|..-++.++||++|||.++.+||||....     .+-.+++.|..+++|++...
T Consensus       394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445558999999999999999999998744     23355666777777776543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=6.3e-05  Score=52.85  Aligned_cols=56  Identities=34%  Similarity=0.545  Sum_probs=47.2

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-----cHHHHHHHHHHHHHHHHc
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-----KEMSANEFIKIHAAYSTL   64 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~~~f~~i~~Ay~~L   64 (119)
                      .+.|.+|++....+..+|+++|+++....|||+.....     ...+.++++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999865322     345677888899998754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00013  Score=51.31  Aligned_cols=69  Identities=32%  Similarity=0.517  Sum_probs=55.1

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459           10 SLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus        10 ~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      +++.++|+++.  ...+.++..|+.+.+.+|||+.....   ...+.+.+..++.||.+|.+|-.|..|--.+.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            46666777665  45677999999999999999976332   23356789999999999999999999987665

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.18  E-value=0.00064  Score=45.64  Aligned_cols=52  Identities=19%  Similarity=0.209  Sum_probs=38.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 033459           10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDP   67 (119)
Q Consensus        10 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~   67 (119)
                      .-..||||++..+.++|.+.|.+|...++|++      .+....-..|..|.+.|...
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k------GGSfYLQSKV~rAKErl~~E  110 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSK------GGSFYLQSKVFRAKERLEQE  110 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCC------TS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCc------CCCHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999999999999997      44666777899999988743

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=93.78  E-value=0.16  Score=33.39  Aligned_cols=48  Identities=15%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCcc--cHHHHHHHHHHHHHHHHcCC
Q 033459           19 VSADGNEIKAAYRRLARTCHPDVVATNQ--KEMSANEFIKIHAAYSTLSD   66 (119)
Q Consensus        19 ~~as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~~~~f~~i~~Ay~~L~d   66 (119)
                      +..+..+++.+.|...+++|||.+...+  +....+-++.|+.-.+.|..
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            3456788999999999999999876432  23333445666655555543

>PF13446 RPT: A repeated domain in UCH-protein

Probab=93.09  E-value=0.29  Score=28.30  Aligned_cols=27  Identities=26%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLAR   35 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~   35 (119)
                      .+-|++|||+++++.+.|-.+|+..+.
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            456999999999999999999998887

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=91.07  E-value=0.67  Score=33.26  Aligned_cols=38  Identities=32%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459           18 PVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS   65 (119)
Q Consensus        18 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~   65 (119)
                      +++|+.+||.+|+.++..+|--|          .+.-..|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd----------~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD----------EKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHH
Confidence            47899999999999999999555          235677999999654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=0.38  Score=36.81  Aligned_cols=56  Identities=30%  Similarity=0.416  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC--cccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459           21 ADGNEIKAAYRRLARTCHPDVVAT--NQKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus        21 as~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      ++..+|+.+|+..++..||++...  .......+.++.|.+||.||++...|...|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~   61 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW   61 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence            567889999999999999998531  01113456789999999999986554455443

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.38  E-value=1.5  Score=29.38  Aligned_cols=48  Identities=19%  Similarity=0.151  Sum_probs=38.2

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcC
Q 033459           12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS   65 (119)
Q Consensus        12 Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~   65 (119)
                      -.||+|++..+.++|.+.|..|...+.+.+      .+....-..|-.|-+-|.
T Consensus        62 ~qILnV~~~ln~eei~k~yehLFevNdksk------GGSFYLQSKVfRAkErld  109 (132)
T KOG3442|consen   62 QQILNVKEPLNREEIEKRYEHLFEVNDKSK------GGSFYLQSKVFRAKERLD  109 (132)
T ss_pred             hhHhCCCCCCCHHHHHHHHHHHHhccCccc------CcceeehHHHHHHHHHHH
Confidence            579999999999999999999999887775      334445566777777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		3e-09
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		7e-09
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-08
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-08
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		4e-08
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-08
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		5e-08
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		1e-07
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		5e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		6e-07
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		2e-06
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-06
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		6e-06
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		2e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		3e-05
4it5_A	174	Chaperone Hscb From Vibrio Cholerae Length = 174		8e-05

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++L +P SA  ++IK AYRR A   HPD    N KE +  +F ++  AY  LSD HKR 
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 72 NYDR 75
           YDR
Sbjct: 64 IYDR 67

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VLG+  SA   +IK AYR+LA   HPD    N KE +  +F  +  AY  LSD  KR+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 72 NYDRA 76
           YDRA
Sbjct: 71 LYDRA 75

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSAN-EFIKIHAAYSTLSDPHKR 70
          Y++LG+  +A+  EI+ AY+RLA   HPD    NQ +  A  +F +I  AY  L+D  KR
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 71 ANYDR 75
          A YD+
Sbjct: 63 AAYDQ 67

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          YDVLG+   A  NE+K AYR++A   HPD     +    A +F +I  AY  LSD  KR 
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD-----KNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 72 NYDRA 76
           YD+ 
Sbjct: 66 IYDQG 70

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSAN-EFIKIHAAYSTLSDPHKR 70
          Y++LG+  +A+  EI+ AY+RLA   HPD    NQ +  A  +F +I  AY  L+D  KR
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 71 ANYDR 75
          A YD+
Sbjct: 63 AAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSAN-EFIKIHAAYSTLSDPHKR 70
          Y++LG+  +A+  EI+ AY+RLA   HPD    NQ +  A  +F +I  AY  L+D  KR
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 71 ANYDR 75
          A YD+
Sbjct: 63 AAYDQ 67

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y VLG+  +A   +IK AY++LAR  HPD    N+   + + FI+I  AY  LS+  KR 
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 72 NYD 74
          NYD
Sbjct: 77 NYD 79

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          YD+LG+P SA   +IK A+ +LA   HPD    N+   +  +F +I  AY TLSD ++R 
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRK 66
Query: 72 NYD 74
           YD
Sbjct: 67 EYD 69

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y +LG+P +A   EIK AY +LA+  HPD   TN+ +  A E F ++  AY  LSD  KR
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPD---TNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
Query: 71 ANYD 74
            YD
Sbjct: 67 KQYD 70

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y+VL +P  A    IK AYR+LA   HPD    N KE +   F ++  AY  LSD  KR 
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 72 NYDR 75
           YDR
Sbjct: 71 IYDR 74

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++LG+   A   ++K AYRRLA   HPD    N    +   F  I  AY+ LS+P KR 
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 72 NYDR 75
           YD+
Sbjct: 67 QYDQ 70

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          YDVLG+  +A   E+K AYR+LA   HPD    N  E    +F +I  AY  LSD  KR 
Sbjct: 9  YDVLGVKPNATQEELKKAYRKLALKYHPD---KNPNE--GEKFKQISQAYEVLSDAKKRE 63
Query: 72 NYDRA 76
           YD+ 
Sbjct: 64 LYDKG 68

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y +LG+  + D   IK AYRRLAR  HPDV   N  E    +F  +  A+  L D  +RA
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA---KFKDLAEAWEVLKDEQRRA 87
Query: 72 NYDR 75
           YD+
Sbjct: 88 EYDQ 91

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y  LG+   A   EIK AYRR A   HPD    N++  +  +F +I  AY  LSDP KR 
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 72 NYDR 75
           +DR
Sbjct: 63 IFDR 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
          LYD+LG+  SA+  E+K  YR+ A   HPD    +       +F +I  A+  L+DP KR
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKR 64
Query: 71 ANYDR 75
            YD+
Sbjct: 65 EIYDQ 69

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y ++G+  + D   IK AYRRLAR  HPDV      E     F ++  A+  LSD  +RA
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR---FKEVAEAWEVLSDEQRRA 64
Query: 72 NYDR 75
           YD+
Sbjct: 65 EYDQ 68

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
          LYD+LG+P +A   +IKAAY R     HPD  + + +  +A  F +I  AY  L     R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAE--AAERFTRISQAYVVLGSATLR 76
Query: 71 ANYDRALF 78
            YDR L 
Sbjct: 77 RKYDRGLL 84

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
          LY VLG+  +A  ++IK +YR+LA   HPD    N +  +A++F +I+ A++ L+D  KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPE--AADKFKEINNAHAILTDATKR 76
Query: 71 ANYDR----ALFVVRK 82
            YD+     L+V  +
Sbjct: 77 NIYDKYGSLGLYVAEQ 92

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y +LG+  +A   EI+ A+++LA   HPD    N    +  +F+KI+ AY  L D   R
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDEDLR 61
Query: 71 ANYDR 75
            YD+
Sbjct: 62 KKYDK 66

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y +LG+  +A   EI+ A+++LA   HPD    N    +  +F+KI+ AY  L D   R
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDEDLR 80
Query: 71 ANYDR 75
            YD+
Sbjct: 81 KKYDK 85

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 12 YDVLGIPVSA-DGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
          YDVL +     D  ++  AYR LAR  HPD V   ++++ A E F  I  AY TL D   
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 70 RANYDRAL 77
          + NYD  L
Sbjct: 78 KTNYDYYL 85

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12  YDVLGIPVSADGNEIKAAYRRLARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y +LG+  +A   EI  AYR+LA   HPD      +K+ +  +FI I AA   LSDP  R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 71  ANYD 74
             +D
Sbjct: 445 KKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 12  YDVLGIPVSADGNEIKAAYRRLARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y +LG+  +A   EI  AYR+LA   HPD      +K+ +  +FI I AA   LSDP  R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 71  ANYD 74
             +D
Sbjct: 445 KKFD 448

>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae Length = 174

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 12 YDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQKE---MSANEFIKIHAAYSTLSD 66
          +++ G+P+    DG+ + + +R L +  HPD  AT  +     +  +  +I+ AY TL D
Sbjct: 7  FELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKD 66
Query: 67 PHKRANY 73
          P +RA Y
Sbjct: 67 PLRRAEY 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	4e-22
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-21
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-21
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	4e-21
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-20
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-20
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-20
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-20
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-20
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	5e-20
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	6e-20
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	7e-20
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-20
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	8e-20
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	8e-20
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-19
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-19
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	5e-19
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-18
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	1e-18
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-18
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-18
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-14
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-14
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-14
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	9e-14
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	7e-11
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-08
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	2e-08
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-06

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 84.1 bits (208), Expect = 4e-22
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 1   MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE----FIK 56
           MA         Y +LG   SA+ +++K  Y++L    HPD  +T+    +  E    FI+
Sbjct: 2   MAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIE 61

Query: 57  IHAAYSTLSDPHKRANYDRALFVVRKRPVSSFSSSSLSSEPMGSMSRFSGNFT 109
           I  A+  L +   +  YD        R V    +       +  MS   G+ +
Sbjct: 62  IDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQV----YLEEMSWNEGDHS 110

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 80.3 bits (199), Expect = 2e-21
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y  LG+   A   EIK AYRR A   HPD    N++  +  +F +I  AY  LSDP KR 
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDK---NKEPGAEEKFKEIAEAYDVLSDPRKRE 62

Query: 72 NYDR 75
           +DR
Sbjct: 63 IFDR 66

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y +LG+  + D   IK AYRRLAR  HPDV   + KE  A   F  +  A+  L D  +R
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDV---S-KENDAEAKFKDLAEAWEVLKDEQRR 86

Query: 71 ANYDR 75
          A YD+
Sbjct: 87 AEYDQ 91

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 79.7 bits (197), Expect = 4e-21
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 1  MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAA 60
          + + ++     Y VLG+  +A   +IK AY++LAR  HPD    N+   + + FI+I  A
Sbjct: 9  LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK---NKDPGAEDRFIQISKA 65

Query: 61 YSTLSDPHKRANYDR 75
          Y  LS+  KR NYD 
Sbjct: 66 YEILSNEEKRTNYDH 80

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 79.0 bits (195), Expect = 1e-20
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 12 YDVLGIPVSA-DGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
          YDVL +     D  ++  AYR LAR  HPD V   ++++ A E F  I  AY TL D   
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 70 RANYDR 75
          + NYD 
Sbjct: 78 KTNYDY 83

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 77.7 bits (192), Expect = 2e-20
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++LG+   A   ++K AYRRLA   HPD    N    +   F  I  AY+ LS+P KR 
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDK---NHAPGATEAFKAIGTAYAVLSNPEKRK 66

Query: 72 NYDR 75
           YD+
Sbjct: 67 QYDQ 70

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 78.0 bits (193), Expect = 2e-20
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y++LG+  +A+  EI+ AY+RLA   HPD    NQ +  A   F +I  AY  L+D  KR
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDR---NQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 71 ANYDR 75
          A YD+
Sbjct: 63 AAYDQ 67

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 77.3 bits (191), Expect = 2e-20
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 3  AAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAY 61
           ++ SS   Y +LG+P +A   EIK AY +LA+  HPD   TN+ +  A E F ++  AY
Sbjct: 1  GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPD---TNKDDPKAKEKFSQLAEAY 57

Query: 62 STLSDPHKRANYDR 75
            LSD  KR  YD 
Sbjct: 58 EVLSDEVKRKQYDA 71

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 77.3 bits (191), Expect = 3e-20
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 2  AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAA 60
          ++ +S     Y+VL +P  A    IK AYR+LA   HPD    N++E  A   F ++  A
Sbjct: 2  SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEE--AERRFKQVAEA 59

Query: 61 YSTLSDPHKRANYDR 75
          Y  LSD  KR  YDR
Sbjct: 60 YEVLSDAKKRDIYDR 74

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 77.0 bits (190), Expect = 5e-20
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          YD+LG+P SA   +IK A+ +LA   HPD    N+   +  +F +I  AY TLSD ++R 
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDK---NKSPDAEAKFREIAEAYETLSDANRRK 66

Query: 72 NYDR 75
           YD 
Sbjct: 67 EYDT 70

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 77.1 bits (190), Expect = 6e-20
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
          LYD+LG+P +A   +IKAAY R     HPD    N     A E F +I  AY  L     
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPD---RNSGSAEAAERFTRISQAYVVLGSATL 75

Query: 70 RANYDR 75
          R  YDR
Sbjct: 76 RRKYDR 81

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 77.1 bits (190), Expect = 8e-20
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y +LG    +   +I A ++  A  CHPD    + +   A E F K+  A   L++   R
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDK---HPENPKAVETFQKLQKAKEILTNEESR 79

Query: 71 ANYDR 75
          A YD 
Sbjct: 80 ARYDH 84

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 76.3 bits (188), Expect = 8e-20
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 1  MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE----FIK 56
          MA   +     Y +LG   SA+ +++K  Y++L    HPD  + +    +  E    FI+
Sbjct: 8  MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE 67

Query: 57 IHAAYSTLSDPHKRANYDR 75
          I  A+  L +   +  YD 
Sbjct: 68 IDQAWKILGNEETKKKYDL 86

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 76.6 bits (189), Expect = 8e-20
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y++L +P SA  ++IK AYRR A   HPD    N KE +  +F ++  AY  LSD HKR 
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKRE 63

Query: 72 NYDR 75
           YDR
Sbjct: 64 IYDR 67

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 78.8 bits (194), Expect = 1e-19
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHKR 70
          Y +LG+  +A   EI+ A+++LA   HPD    N    +A+  F+KI+ AY  L D   R
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDK---NPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 71 ANYDR 75
            YD+
Sbjct: 62 KKYDK 66

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 77.3 bits (190), Expect = 2e-19
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 12 YDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAAYSTLSD 66
          + + G+P     D   +   ++ L R  HPD  A+    ++  +  +   I+ A+ TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 67 PHKRANYDRAL 77
          P  RA Y  +L
Sbjct: 64 PLMRAEYLLSL 74

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 75.0 bits (185), Expect = 2e-19
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 2  AAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAA 60
          ++ +S  ++ Y+VLG+  SA   +IK AYR+LA   HPD    N++E  A + F  +  A
Sbjct: 2  SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEE--AEKKFKLVSEA 59

Query: 61 YSTLSDPHKRANYDR 75
          Y  LSD  KR+ YDR
Sbjct: 60 YEVLSDSKKRSLYDR 74

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 74.7 bits (184), Expect = 5e-19
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 5  ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYST 63
          ++S  SLY VLG+  +A  ++IK +YR+LA   HPD    N     A + F +I+ A++ 
Sbjct: 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK---NPDNPEAADKFKEINNAHAI 69

Query: 64 LSDPHKRANYDR 75
          L+D  KR  YD+
Sbjct: 70 LTDATKRNIYDK 81

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 73.5 bits (181), Expect = 1e-18
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
          LYD+LG+  SA+  E+K  YR+ A   HPD      K     E F +I  A+  L+DP K
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPD------KPTGDTEKFKEISEAFEILNDPQK 63

Query: 70 RANYDR 75
          R  YD+
Sbjct: 64 REIYDQ 69

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 72.7 bits (179), Expect = 1e-18
 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPHK 69
           YDVLG+   A  NE+K AYR++A   HPD      K     E F +I  AY  LSD  K
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPD------KNPDGAEQFKQISQAYEVLSDEKK 63

Query: 70 RANYDR 75
          R  YD+
Sbjct: 64 RQIYDQ 69

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 73.7 bits (181), Expect = 1e-18
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 6  SSSSSLYDVLGIPVSADGN--EIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST 63
            S  L D+LG+  SA GN   ++ AY +  +  HPD      K     +  K++  Y  
Sbjct: 5  EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD------KGGDEEKMKKMNTLYKK 58

Query: 64 LSDPHKRANYDR 75
          + D  K A+   
Sbjct: 59 MEDGVKYAHQPD 70

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 75.3 bits (185), Expect = 2e-18
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 6  SSSSSLYDVLGIPVSADGN--EIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST 63
            S  L D+LG+  SA GN   ++ AY +  +  HPD      K     +  K++  Y  
Sbjct: 8  EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD------KGGDEEKMKKMNTLYKK 61

Query: 64 LSDPHKRANYDR 75
          + D  K A+   
Sbjct: 62 MEDGVKYAHQPD 73

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.8 bits (179), Expect = 2e-18
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          +D+LG+   A  +E+  AYR+LA   HPD         S + F  +  A + L    K  
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDK---CVAPGSEDAFKAVVNARTALLKNIKSG 86

Query: 72 NYD 74
             
Sbjct: 87 PSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 6   SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPD-VVATNQKEMSANEFIKIHAAYSTL 64
           S     Y +LG+  +A   EI  AYR+LA   HPD      +K+ +  +FI I AA   L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

Query: 65  SDPHKRANYDR 75
           SDP  R  +D 
Sbjct: 439 SDPEMRKKFDD 449

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 68.6 bits (167), Expect = 5e-15
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 4  AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST 63
                + Y +LG+  +A   EI+ A+++LA   HPD         +  +F+KI+ AY  
Sbjct: 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPD--KNPNNPNAHGDFLKINRAYEV 73

Query: 64 LSDPHKRANYD 74
          L D   R  YD
Sbjct: 74 LKDEDLRKKYD 84

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 62.4 bits (152), Expect = 3e-14
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
            V+        +E K   RRL    HPD    N  +++   F  +    + L    K+A
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLE---KQA 74

Query: 72 NYDR 75
            D+
Sbjct: 75 FLDQ 78

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 61.9 bits (150), Expect = 3e-14
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 6  SSSSSLYDVLGIPVSADGN--EIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST 63
          +    L ++L +P    G+   ++ AY++ +   HPD      K  S     ++++ + T
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD------KGGSHALMQELNSLWGT 61

Query: 64 LSDPHKRANYD 74
                    +
Sbjct: 62 FKTEVYNLRMN 72

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 64.2 bits (156), Expect = 3e-14
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 6  SSSSSLYDVLGI-------PVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIH 58
            +S+ Y++            + D + ++  YR+L    HPD+         + +   ++
Sbjct: 8  RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLN 62

Query: 59 AAYSTLSDPHKRANYDRALF 78
           AY TL DP +R+ Y   L 
Sbjct: 63 QAYHTLKDPLRRSQYMLKLL 82

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 63.6 bits (154), Expect = 9e-14
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 6   SSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATN---QKEMSANEFIKIHAA 60
             +   + ++    S   D  +++  Y++L R  HPD  +     +K+ S      ++ A
Sbjct: 40  DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99

Query: 61  YSTLSDPHKRANYD 74
           Y TL  P  R  Y 
Sbjct: 100 YKTLLAPLSRGLYL 113

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 55.6 bits (133), Expect = 7e-11
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 7   SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLS 65
           +  + +  +G+       ++K  YR+     HPD       E  A   F++++ A+S   
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174

Query: 66  DPHKRANY 73
           +  ++  Y
Sbjct: 175 NQGQKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 7/60 (11%)

Query: 12 YDVLGIPVSADG-NEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
            +L +  +     ++K  +R++    HPD      K  S     KI+ A   L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPD------KGGSPFLATKINEAKDFLEKRGIS 70

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 46.9 bits (111), Expect = 2e-08
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 7  SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLS 65
          +  + +  +G+       ++K  YR+     HP        E  A   F++++ A+S   
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 66 D 66
          +
Sbjct: 91 N 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 8   SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVA-----TNQKEMSANEFIKIHAAYS 62
           S S +  + +    +GN ++ +Y+R     HPD +       NQK M+   F  +  A+ 
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98

Query: 63  TLS 65
             +
Sbjct: 99  HFN 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.91
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.9
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.9
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.9
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.9
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.9
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.9
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.89
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.89
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.89
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.89
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.89
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.89
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.88
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.88
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.87
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.85
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.83
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.82
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.82
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.79
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.78
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.78
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.77
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.77
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.77
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.75
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.75
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.73
2guz_A	71	Mitochondrial import inner membrane translocase su	99.72
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.67
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.31
2guz_B	65	Mitochondrial import inner membrane translocase su	99.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.83

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.91  E-value=2.9e-25  Score=140.66  Aligned_cols=79  Identities=27%  Similarity=0.429  Sum_probs=69.6

Q ss_pred             CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN----QKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~----~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      |+.......|||+||||+++++.++||++|++|++++|||+++..    ..+.+.+.|+.|++||+||+||.+|..||..
T Consensus         8 ~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   87 (94)
T 1wjz_A            8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             cccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            445556778999999999999999999999999999999997632    2367889999999999999999999999997


Q ss_pred             hHh
Q 033459           77 LFV   79 (119)
Q Consensus        77 l~~   79 (119)
                      +..
T Consensus        88 l~~   90 (94)
T 1wjz_A           88 RSG   90 (94)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=7.8e-24  Score=132.80  Aligned_cols=74  Identities=39%  Similarity=0.602  Sum_probs=67.0

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhh
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVV   80 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   80 (119)
                      ++....|||+||||+++++.++||++|++|++++|||+++   .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK---SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC---SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC---ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            4567789999999999999999999999999999999976   3568899999999999999999999999976543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=2.9e-24  Score=137.52  Aligned_cols=74  Identities=38%  Similarity=0.604  Sum_probs=66.6

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      ......|||+||||+++++.++||++|++|++++|||+++..  +.+.+.|+.|++||+||+||.+|..||..|..
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            346678999999999999999999999999999999997643  45788999999999999999999999997654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=5.5e-24  Score=131.71  Aligned_cols=74  Identities=41%  Similarity=0.602  Sum_probs=66.5

Q ss_pred             CCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            3 AAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         3 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      .+.+...|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+
T Consensus         3 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   76 (82)
T 2ej7_A            3 SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG   76 (82)
T ss_dssp             SCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred             CCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            3556778999999999999999999999999999999998643 3567889999999999999999999999854

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=3.9e-24  Score=131.54  Aligned_cols=72  Identities=38%  Similarity=0.609  Sum_probs=65.5

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      +.....|||+||||+++++.++||++|++|++++|||+++..  +.+.+.|+.|++||++|+||.+|..||..+
T Consensus         2 s~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   73 (79)
T 2dn9_A            2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKRKQYDAYG   73 (79)
T ss_dssp             CSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence            567788999999999999999999999999999999998643  347889999999999999999999999854

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=8.1e-24  Score=133.63  Aligned_cols=74  Identities=43%  Similarity=0.638  Sum_probs=66.5

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..+...|||+||||+++++.++||++|++|++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            456678999999999999999999999999999999998643 35688999999999999999999999998653

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=6.2e-24  Score=130.38  Aligned_cols=72  Identities=38%  Similarity=0.603  Sum_probs=65.6

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ++....|||+||||+++++.++||++|+++++++|||++..   +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            56778899999999999999999999999999999999653   5678999999999999999999999998553

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=136.50  Aligned_cols=74  Identities=26%  Similarity=0.393  Sum_probs=66.6

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            4 AASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         4 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      ......|||+||||+++++.++||++||+|++++|||+++.+  +.+.+.|+.|++||+||+||.+|..||..+..
T Consensus        15 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            345678999999999999999999999999999999998744  34788999999999999999999999998764

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.3e-23  Score=130.94  Aligned_cols=72  Identities=35%  Similarity=0.607  Sum_probs=64.2

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHhhhc
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRK   82 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~~   82 (119)
                      ....|||+||||+++++.++||++|++|++++|||+++..     .+.|++|++||++|+||.+|..||..+.....
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   76 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKREIYDQYGLEAAR   76 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence            4567999999999999999999999999999999997643     35899999999999999999999998765444

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=133.00  Aligned_cols=69  Identities=45%  Similarity=0.683  Sum_probs=63.6

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~   70 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR   70 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            5899999999999999999999999999999998643 45688999999999999999999999999765

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=2.9e-23  Score=130.22  Aligned_cols=71  Identities=38%  Similarity=0.568  Sum_probs=64.2

Q ss_pred             CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .....|||+||||+++++.++||++|+++++++|||+++.   +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            3457799999999999999999999999999999999764   3477899999999999999999999998653

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.89  E-value=3.5e-23  Score=125.57  Aligned_cols=67  Identities=42%  Similarity=0.654  Sum_probs=60.6

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      ....|||+||||+++++.++||++|+++++++|||+++..     .+.|+.|++||++|+||.+|..||..+
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~g   71 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEKKRQIYDQGG   71 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            4567999999999999999999999999999999997642     468999999999999999999999854

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.89  E-value=3.9e-23  Score=126.51  Aligned_cols=68  Identities=40%  Similarity=0.563  Sum_probs=62.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++++.++||++|+++++++|||+++.   +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   69 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4699999999999999999999999999999999763   3477899999999999999999999999654

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.88  E-value=5e-23  Score=141.13  Aligned_cols=82  Identities=27%  Similarity=0.411  Sum_probs=72.7

Q ss_pred             CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----cHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ----KEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      |+...+..+|||+||||+++++.++||++||+|++++|||+++...    .+.+.+.|..|++||+||+||.+|+.||..
T Consensus         2 m~~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~   81 (155)
T 2l6l_A            2 MAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ   81 (155)
T ss_dssp             CCCCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred             CCcccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6777788899999999999999999999999999999999987542    345678999999999999999999999998


Q ss_pred             hHhhhc
Q 033459           77 LFVVRK   82 (119)
Q Consensus        77 l~~~~~   82 (119)
                      +.....
T Consensus        82 ~~~~~~   87 (155)
T 2l6l_A           82 RCEDDL   87 (155)
T ss_dssp             HHHHHH
T ss_pred             cchhhc
Confidence            876544

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=1.1e-22  Score=132.31  Aligned_cols=72  Identities=39%  Similarity=0.580  Sum_probs=65.4

Q ss_pred             CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .....+||+||||+++++.++||++|++|++++|||+++..  +.+.+.|+.|++||+||+||.+|..||..+.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            45678999999999999999999999999999999998643  5678999999999999999999999998654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.87  E-value=9e-23  Score=132.52  Aligned_cols=74  Identities=36%  Similarity=0.531  Sum_probs=67.0

Q ss_pred             CCCccCccccccCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-cccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            5 ASSSSSLYDVLGIPVSA-DGNEIKAAYRRLARTCHPDVVAT-NQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .....|||+||||++++ +.++||++||++++++|||++++ ...+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            35678999999999999 99999999999999999999874 3456788999999999999999999999999775

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=7.5e-23  Score=131.72  Aligned_cols=69  Identities=36%  Similarity=0.634  Sum_probs=62.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ..|||+||||+++++.++||++||+|++++|||+++..  +.+.++|+.|++||++|+||.+|..||..+.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence            47999999999999999999999999999999998643  3477899999999999999999999998664

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=135.28  Aligned_cols=75  Identities=24%  Similarity=0.404  Sum_probs=65.2

Q ss_pred             CCCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459            5 ASSSSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      .....|||+||||+++  ++.++||++||+|++++|||++++..   ...+.+.|+.|++||+||+||.+|..||..+.+
T Consensus        39 ~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G  118 (207)
T 3bvo_A           39 PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG  118 (207)
T ss_dssp             CCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence            3446799999999986  79999999999999999999987542   335678899999999999999999999987764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.82  E-value=6.7e-21  Score=132.65  Aligned_cols=70  Identities=26%  Similarity=0.463  Sum_probs=63.2

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhHh
Q 033459           10 SLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALFV   79 (119)
Q Consensus        10 ~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   79 (119)
                      |||+||||++++  +..+||++||+|++++|||+++...   ...+.+.|..|++||+||+||.+|..||..+.+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g   76 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence            899999999998  9999999999999999999987543   235678999999999999999999999998763

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.82  E-value=1.2e-20  Score=133.38  Aligned_cols=68  Identities=34%  Similarity=0.592  Sum_probs=62.5

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .|||+||||+++++.++||+|||+|++++|||+++..  +.+.++|+.|++||++|+||.+|..||..+.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~   69 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   69 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence            5899999999999999999999999999999998644  3478899999999999999999999999654

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=6.6e-21  Score=119.95  Aligned_cols=62  Identities=31%  Similarity=0.445  Sum_probs=56.0

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHH
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA   71 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   71 (119)
                      ...|||+||||+++++.++||++||+|++++|||+++.   +.+.+.|+.|++||++|+|+.+|.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCccccc
Confidence            35799999999999999999999999999999999763   447788999999999999998775

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.79  E-value=2.3e-20  Score=117.08  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=56.7

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHH
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR   70 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R   70 (119)
                      ....++|+||||+++++.++||++||+|++++|||+++... +.+.+.|+.|++||++|+|...|
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~-~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-DIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch-HHHHHHHHHHHHHHHHHHhhccc
Confidence            45568999999999999999999999999999999987543 56889999999999999987555

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.78  E-value=2.5e-21  Score=126.81  Aligned_cols=62  Identities=29%  Similarity=0.408  Sum_probs=57.2

Q ss_pred             ccCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459            8 SSSLYDVLGIPVSADG--NEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR   75 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~   75 (119)
                      ..++|+||||+++++.  ++||++||+|++++|||+++.      .++|++|++||+||+||.+|..||.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            4689999999999998  999999999999999999654      3589999999999999999999985

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.78  E-value=9.2e-20  Score=127.92  Aligned_cols=69  Identities=28%  Similarity=0.592  Sum_probs=61.3

Q ss_pred             CCCCccCccccc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            4 AASSSSSLYDVL------GIPV-SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         4 ~~~~~~~~Y~iL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      +.....|||+||      |+++ +++..+||++||+|++++|||++++     +.+.|..|++||+||+||.+|..||..
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            445678999999      4665 8999999999999999999999764     556899999999999999999999998


Q ss_pred             h
Q 033459           77 L   77 (119)
Q Consensus        77 l   77 (119)
                      +
T Consensus        81 l   81 (181)
T 3uo3_A           81 L   81 (181)
T ss_dssp             H
T ss_pred             H
Confidence            8

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.77  E-value=5.8e-20  Score=128.75  Aligned_cols=65  Identities=17%  Similarity=0.384  Sum_probs=58.8

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQK-EMSANEFIKIHAAYSTLSDPHKRANY   73 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Y   73 (119)
                      .|+|+||||+++++.++||++||++++++|||+++.... ..+.+.|+.|++||+||+|+.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999875432 24788999999999999999999876

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.77  E-value=2e-20  Score=141.80  Aligned_cols=71  Identities=37%  Similarity=0.593  Sum_probs=0.0

Q ss_pred             CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            5 ASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         5 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .+...|||+||||+++|+.++||+|||+|++++|||+++.   +.+.++|++|++||++|+||.+|..||+.+.
T Consensus        24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            3456899999999999999999999999999999999653   3578899999999999999999999998643

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.77  E-value=1.3e-19  Score=111.52  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=53.8

Q ss_pred             ccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459            8 SSSLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANY   73 (119)
Q Consensus         8 ~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   73 (119)
                      ..++|+||||+++  ++.++||++||+|++++|||++.      ..+.|++|++||++|+|+.+|..+
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~------~~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC------CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------CHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3589999999999  99999999999999999999954      246899999999999999888763

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.75  E-value=3.5e-20  Score=129.11  Aligned_cols=66  Identities=26%  Similarity=0.268  Sum_probs=57.3

Q ss_pred             CccCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            7 SSSSLYDVLGIPVSAD--GNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ...|+|+||||+++++  .++||+|||++++++|||++++      .++|++|++||++|+||.+|+.||+...
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3469999999999998  6999999999999999999654      3579999999999999999999999664

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.75  E-value=4e-19  Score=112.13  Aligned_cols=58  Identities=16%  Similarity=0.340  Sum_probs=51.9

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHcCC
Q 033459            9 SSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQK-EMSANEFIKIHAAYSTLSD   66 (119)
Q Consensus         9 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~f~~i~~Ay~~L~d   66 (119)
                      .++|++|||++.++.++||+|||++++++|||++++... ..+.+.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999875432 3578899999999999974

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.73  E-value=9.5e-19  Score=113.16  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=52.5

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----ccHHHHHHHHHHHHHHHHcCCch
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN-----QKEMSANEFIKIHAAYSTLSDPH   68 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~~f~~i~~Ay~~L~d~~   68 (119)
                      ...|||+|||++. |+.++||+|||++++++||||++..     ....+.++|+.|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3469999999996 9999999999999999999997521     12356889999999999999985

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.9e-19  Score=106.17  Aligned_cols=59  Identities=20%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             CCccCccccccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHH
Q 033459            6 SSSSSLYDVLGIPV-SADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR   70 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R   70 (119)
                      +...++|+||||++ +++.++||++||+|++++|||+..      ..+.|++|++||++|+++..|
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g------~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG------SPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHHHhhhhhc
Confidence            44568999999999 799999999999999999999942      245899999999999987654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.67  E-value=3.1e-18  Score=140.46  Aligned_cols=71  Identities=32%  Similarity=0.567  Sum_probs=40.5

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            6 SSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      ....|||+||||+++|+.++||+|||+|++++|||+++..  +.+.++|++|++||++|+||.+|..||+.+.
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-------------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            4567999999999999999999999999999999997543  4578899999999999999999999998654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.31  E-value=1.3e-12  Score=98.19  Aligned_cols=68  Identities=38%  Similarity=0.623  Sum_probs=56.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHKRANYDR   75 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~   75 (119)
                      ..++|++||+.+.++.++|+++|+++++++|||+.+... +..+.+.|..|.+||++|+|+.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            358999999999999999999999999999999976432 35688899999999999999999999997

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.19  E-value=9.3e-12  Score=73.55  Aligned_cols=51  Identities=18%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             CccccccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCC
Q 033459           10 SLYDVLGIPVS---ADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSD   66 (119)
Q Consensus        10 ~~Y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d   66 (119)
                      .-|.||||+++   ++.++|+++||+|+..+|||+      .+.......|++|.++|..
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDk------GGS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEK------GGSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGG------TCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHH
Confidence            45789999999   999999999999999999998      3455678889999999863

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.83  E-value=0.021  Score=46.12  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=37.3

Q ss_pred             CCccCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHH
Q 033459            6 SSSSSLYDVLGIPVSADG--NEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST   63 (119)
Q Consensus         6 ~~~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~   63 (119)
                      +..+++|.|||++.+...  .+|+++||++++..+++          .+++..|..|..|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence            345679999999776655  67999999999965544          3578888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	9e-17
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-16
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	3e-15
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	7e-15
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-14
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	5e-14
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-11
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-11

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (163), Expect = 9e-17
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 12 YDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSD 66
          + + G+P     D   +   ++ L R  HPD  A+     +  +  +   I+ A+ TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 67 PHKRANYDRAL 77
          P  RA Y  +L
Sbjct: 64 PLMRAEYLLSL 74

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (164), Expect = 1e-16
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 1  MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE----FIK 56
          MA   +     Y +LG   SA+ +++K  Y++L    HPD  + +    +  E    FI+
Sbjct: 8  MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE 67

Query: 57 IHAAYSTLSDPHKRANYDR 75
          I  A+  L +   +  YD 
Sbjct: 68 IDQAWKILGNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.8 bits (155), Expect = 3e-15
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 10 SLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANE-FIKIHAAYSTLSDPH 68
          + +  +G+       ++K  YR+     HPD       E  A   F++++ A+S   +  
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 69 KRANY 73
          ++  Y
Sbjct: 94 QKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (151), Expect = 7e-15
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 11 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKR 70
           Y++LG+  +A+  EI+ AY+RLA   HPD       + +  +F +I  AY  L+D  KR
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPD--RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 71 ANYDR 75
          A YD+
Sbjct: 63 AAYDQ 67

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 60.8 bits (147), Expect = 2e-14
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 6  SSSSSLYDVLGIPVSADGN--EIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYST 63
          +    L ++L +P    G+   ++ AY++ +   HP       K  S     ++++ + T
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHP------DKGGSHALMQELNSLWGT 61

Query: 64 LSDPHKRANYDR 75
                    + 
Sbjct: 62 FKTEVYNLRMNL 73

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 5e-14
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 12 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRA 71
          Y  LG+   A   EIK AYRR A   HPD    N++  +  +F +I  AY  LSDP KR 
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62

Query: 72 NYDR 75
           +DR
Sbjct: 63 IFDR 66

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 54.4 bits (130), Expect = 2e-11
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 8  SSSLYDVLGIPVSADGN--EIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLS 65
          S  L D+LG+  SA GN   ++ AY +  +  HP       K     +  K++  Y  + 
Sbjct: 7  SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHP------DKGGDEEKMKKMNTLYKKME 60

Query: 66 DPHKRANYDR 75
          D  K A+   
Sbjct: 61 DGVKYAHQPD 70

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 5e-11
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 1  MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAA 60
          +    S    +  V+        +E K   RRL    HPD    N    +   F  +   
Sbjct: 8  LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIAN-EVFKHLQNE 66

Query: 61 YSTLSDPHKRANYDRALFVVRKRP 84
           + L    K+A  D+      +R 
Sbjct: 67 INRLE---KQAFLDQNADRASRRT 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.91
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.85
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.84
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.79
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.76

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.3e-25  Score=135.75  Aligned_cols=68  Identities=37%  Similarity=0.644  Sum_probs=62.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRAL   77 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   77 (119)
                      .+|||+||||+++|+.++||+||+++++++|||+++..  +.+.+.|..|++||+||+||.+|..||+.+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g   69 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAAYDQYG   69 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT--CHHHHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence            57999999999999999999999999999999997654  346788999999999999999999999854

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.5e-25  Score=139.88  Aligned_cols=78  Identities=27%  Similarity=0.448  Sum_probs=68.1

Q ss_pred             CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            1 MAAAASSSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATN----QKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         1 m~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~----~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      |.......+|||+||||+++++.++||++|++|++++|||++...    ....+.+.|+.|++||+||+||.+|..||..
T Consensus         8 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~   87 (94)
T d1wjza_           8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             chhhhhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            445556778999999999999999999999999999999998643    2356778899999999999999999999986


Q ss_pred             hH
Q 033459           77 LF   78 (119)
Q Consensus        77 l~   78 (119)
                      +.
T Consensus        88 ~~   89 (94)
T d1wjza_          88 RS   89 (94)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-24  Score=129.47  Aligned_cols=68  Identities=40%  Similarity=0.563  Sum_probs=61.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      .+|||+||||+++++.++|+++|+++++++|||++..   +.+.+.|..|++||+||+||.+|..||+.+.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~---~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~   69 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence            4699999999999999999999999999999999754   3467789999999999999999999998544

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.2e-22  Score=121.64  Aligned_cols=69  Identities=26%  Similarity=0.491  Sum_probs=60.6

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---cHHHHHHHHHHHHHHHHcCCchHHHHHHHHhH
Q 033459           10 SLYDVLGIPVS--ADGNEIKAAYRRLARTCHPDVVATNQ---KEMSANEFIKIHAAYSTLSDPHKRANYDRALF   78 (119)
Q Consensus        10 ~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   78 (119)
                      |||+||||+++  ++.++||++|+++++++|||++....   ...+.+.|..|++||+||+||.+|..|+..|.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            89999999985  56899999999999999999986432   34567889999999999999999999998764

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.84  E-value=2.2e-23  Score=135.04  Aligned_cols=63  Identities=27%  Similarity=0.374  Sum_probs=57.3

Q ss_pred             ccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 033459            8 SSSLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDRA   76 (119)
Q Consensus         8 ~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~   76 (119)
                      ..++|+||||+++|  +.++||+|||+|++++|||++++.      ++|+.|++||+||+|+.+|..||..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~------e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT------TTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH------HHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            46899999999998  788999999999999999997642      4799999999999999999999963

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.79  E-value=7.1e-21  Score=115.64  Aligned_cols=63  Identities=16%  Similarity=0.278  Sum_probs=57.0

Q ss_pred             CccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459            7 SSSSLYDVLGIPVSA--DGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR   75 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~   75 (119)
                      ...++|+||||++++  +.++||+||+++++++|||++.+      .+.|++|++||++|+|+.+|..||.
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------~e~~~~in~Ay~~L~d~~~r~~~~~   73 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------HHHHHHHHHHHHHHCCHHHHHHHcc
Confidence            456899999999987  99999999999999999999542      3579999999999999999999987

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=2.9e-20  Score=117.22  Aligned_cols=66  Identities=17%  Similarity=0.397  Sum_probs=59.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHHHHHHHHHcCCchHHHHH
Q 033459            8 SSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHKRANY   73 (119)
Q Consensus         8 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   73 (119)
                      ..++|++|||...++.++||++|+++++.+|||++.... ...+.+.|..|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457899999999999999999999999999999987443 345788899999999999999999876

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.1e-20  Score=112.79  Aligned_cols=65  Identities=22%  Similarity=0.262  Sum_probs=56.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 033459            7 SSSSLYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR   75 (119)
Q Consensus         7 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~   75 (119)
                      ...++|+||||+.+++.++||+||++|++++|||+++++ .+.+.+.|+.|++||++|++   +..||.
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~~---~~~~d~   78 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEK---QAFLDQ   78 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHH---HTTCSS
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch-hhHHHHHHHHHHHHHHHHHH---HHHhhc
Confidence            346999999999999999999999999999999998765 45688999999999999963   455554