Citrus Sinensis ID: 033460


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
MQGRSRKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHSGHGKLH
cccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHccHHHHHccEEEEEEccccEEEEEccHHHHHHHHccccEEEEEccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHccHHHHHHHHHHHccccccccEEEccHHHHHHHHccccEEEEEccccEEEcccccccc
mqgrsrknFLSSAVILWILIVEMaettappqaesAVQIVYterpqdeepesFHLRILSSVLGSEEAAKDALLYSYKTaasgfsakltpqqvdeiskqpgvlqvvpsrtlqlhsghgklh
mqgrsrknflsSAVILWILIVEMAETTAPPQAESAVQIVYTErpqdeepeSFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQpgvlqvvpsrtlqlhsghgklh
MQGRSRKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHSGHGKLH
********FLSSAVILWILIVEMAET***********IVY************HLRILSSVLG***AAKDALLYSYKTAAS***************************************
*********LSSAVILWILIVEMAETT****AESAVQIVYTERPQ****ESFHLRILSSV*********ALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQL*S******
********FLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRT***********
****SRKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHS******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQGRSRKNFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHSGHGKLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query119 2.2.26 [Sep-21-2011]
O65351 757 Subtilisin-like protease no no 0.873 0.137 0.292 2e-06
Q39547 731 Cucumisin OS=Cucumis melo N/A no 0.638 0.103 0.345 6e-05
Q9LLL8 749 Xylem serine proteinase 1 no no 0.638 0.101 0.346 0.0001
>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 Back     alignment and function desciption
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 8   NFLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAA 67
           +FLSS     +L +     ++   ++    IV+  + Q       H     S L S   +
Sbjct: 4   SFLSSTAFFLLLCLGFCHVSSS-SSDQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDS 62

Query: 68  KDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHS 113
            + LLY+Y+ A  GFS +LT ++ D +  QPGV+ V+P    +LH+
Sbjct: 63  AE-LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHT 107




Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -
>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 Back     alignment and function description
>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query119
255571742129 peptidase, putative [Ricinus communis] g 0.882 0.813 0.728 1e-36
388504784135 unknown [Lotus japonicus] 0.705 0.622 0.833 8e-34
357439953130 Xylem serine proteinase [Medicago trunca 0.873 0.8 0.648 4e-33
388505344130 unknown [Medicago truncatula] 0.873 0.8 0.648 4e-33
224135543100 predicted protein [Populus trichocarpa] 0.806 0.96 0.722 2e-32
225460544130 PREDICTED: subtilisin-like protease isof 0.957 0.876 0.638 3e-32
224146385138 predicted protein [Populus trichocarpa] 0.705 0.608 0.790 1e-31
118484429102 unknown [Populus trichocarpa] 0.705 0.823 0.790 2e-31
147790927108 hypothetical protein VITISV_004265 [Viti 0.705 0.777 0.797 3e-31
356500305136 PREDICTED: subtilisin-like protease-like 0.865 0.757 0.618 6e-31
>gi|255571742|ref|XP_002526814.1| peptidase, putative [Ricinus communis] gi|223533818|gb|EEF35549.1| peptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 97/107 (90%), Gaps = 2/107 (1%)

Query: 13  AVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALL 72
           A I++ LI +MA++++ P +E+AV IVYTERPQDEEPE++H+R L+SVLGS+EAAK+AL+
Sbjct: 25  AFIVFSLI-KMADSSSAP-SEAAVHIVYTERPQDEEPEAYHIRTLASVLGSDEAAKEALV 82

Query: 73  YSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHSGHGKLH 119
           YSYKTAASGFSAKLTP+QV +ISKQPGVLQVVPSRT+QLHSG  KLH
Sbjct: 83  YSYKTAASGFSAKLTPEQVAQISKQPGVLQVVPSRTVQLHSGPAKLH 129




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504784|gb|AFK40458.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357439953|ref|XP_003590254.1| Xylem serine proteinase [Medicago truncatula] gi|355479302|gb|AES60505.1| Xylem serine proteinase [Medicago truncatula] gi|388517597|gb|AFK46860.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388505344|gb|AFK40738.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224135543|ref|XP_002327244.1| predicted protein [Populus trichocarpa] gi|118485178|gb|ABK94450.1| unknown [Populus trichocarpa] gi|222835614|gb|EEE74049.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460544|ref|XP_002277352.1| PREDICTED: subtilisin-like protease isoform 1 [Vitis vinifera] gi|225460546|ref|XP_002277374.1| PREDICTED: subtilisin-like protease isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146385|ref|XP_002325989.1| predicted protein [Populus trichocarpa] gi|118482991|gb|ABK93407.1| unknown [Populus trichocarpa] gi|222862864|gb|EEF00371.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484429|gb|ABK94091.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147790927|emb|CAN68260.1| hypothetical protein VITISV_004265 [Vitis vinifera] gi|296081023|emb|CBI18527.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356500305|ref|XP_003518973.1| PREDICTED: subtilisin-like protease-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query119
TAIR|locus:2016079136 AT1G71950 [Arabidopsis thalian 0.907 0.794 0.620 1e-29
UNIPROTKB|Q851N0116 OSJNBa0042I09.14 "Putative Pi 0.915 0.939 0.381 6.9e-15
UNIPROTKB|Q6Z159117 P0443H10.1 "Putative uncharact 0.621 0.632 0.493 7.9e-14
TAIR|locus:2037915 773 AT1G32950 "AT1G32950" [Arabido 0.857 0.131 0.385 2.1e-12
TAIR|locus:2205278 753 AT1G66220 "AT1G66220" [Arabido 0.848 0.134 0.419 3.3e-12
TAIR|locus:2127656 747 AT4G10530 "AT4G10530" [Arabido 0.672 0.107 0.433 1.1e-11
TAIR|locus:2127706 756 AT4G10520 "AT4G10520" [Arabido 0.672 0.105 0.433 1.1e-11
TAIR|locus:2143014 762 AT5G11940 "AT5G11940" [Arabido 0.806 0.125 0.383 1.9e-11
TAIR|locus:2037935 777 SBT3.3 "AT1G32960" [Arabidopsi 0.831 0.127 0.378 1.9e-11
UNIPROTKB|Q0J050 769 Os09g0530800 "Os09g0530800 pro 0.840 0.130 0.405 3.9e-11
TAIR|locus:2016079 AT1G71950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 67/108 (62%), Positives = 82/108 (75%)

Query:     9 FLSSAVILWILIVEMAETTAPPQAESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAK 68
             F  S+    I++ +     A   +E+ V I+YTE+P DEEP+++HLR LSS LGSEEAAK
Sbjct:    22 FCLSSFFASIVMADEYTGEATGSSEAKVHIIYTEKPTDEEPKTYHLRTLSSALGSEEAAK 81

Query:    69 DALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLHSGHG 116
             DAL+YSYK AASGFSAKLTP+QV EISKQPGV+QVVPS+T QLH   G
Sbjct:    82 DALIYSYKEAASGFSAKLTPEQVAEISKQPGVIQVVPSQTYQLHKPGG 129




GO:0004252 "serine-type endopeptidase activity" evidence=IEA
GO:0042802 "identical protein binding" evidence=IEA
GO:0043086 "negative regulation of catalytic activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA
UNIPROTKB|Q851N0 OSJNBa0042I09.14 "Putative Pi starvation induced protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z159 P0443H10.1 "Putative uncharacterized protein P0443H10.1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2037915 AT1G32950 "AT1G32950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205278 AT1G66220 "AT1G66220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127656 AT4G10530 "AT4G10530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127706 AT4G10520 "AT4G10520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143014 AT5G11940 "AT5G11940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00038672001
SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (130 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
pfam0592276 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 2e-14
>gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 Back     alignment and domain information
 Score = 63.1 bits (154), Expect = 2e-14
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 38  IVYTERP-QDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISK 96
           IV  +         S H    +S    EEAA  ++LYSYK   +GF+AKLT ++ +++ K
Sbjct: 3   IVKFKDGVSKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEEAEKLRK 60

Query: 97  QPGVLQVVPSRTLQLH 112
            P V  V P + ++LH
Sbjct: 61  HPDVEYVEPDQVVELH 76


This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 119
PF0592282 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP 99.73
KOG1153 501 consensus Subtilisin-related protease/Vacuolar pro 94.8
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
Probab=99.73  E-value=5.6e-18  Score=108.22  Aligned_cols=77  Identities=34%  Similarity=0.508  Sum_probs=58.4

Q ss_pred             eEEEEeCCCCCCCc-hHHHHHHHHHhhCch----hhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCcee
Q 033460           36 VQIVYTERPQDEEP-ESFHLRILSSVLGSE----EAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQ  110 (119)
Q Consensus        36 ~YIV~m~~~~~~~~-~~~h~~~l~s~~~s~----~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~  110 (119)
                      +|||.|+++..... .++|.+|+.+.+.+.    ......++|+|+..||||+++|+++++++|++.|+|.+|+||+.++
T Consensus         1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~   80 (82)
T PF05922_consen    1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS   80 (82)
T ss_dssp             EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred             CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence            69999999865444 677888888654432    1124579999999999999999999999999999999999999999


Q ss_pred             cc
Q 033460          111 LH  112 (119)
Q Consensus       111 lh  112 (119)
                      +|
T Consensus        81 l~   82 (82)
T PF05922_consen   81 LH   82 (82)
T ss_dssp             E-
T ss_pred             cC
Confidence            86



In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query119
2w2n_P114 Proprotein convertase subtilisin/kexin type 9; hyd 99.77
3cnq_P80 Subtilisin BPN'; uncleaved, proenzyme, substrate c 99.73
2qtw_A124 Proprotein convertase subtilisin/kexin type 9 Pro; 99.65
1v5i_B76 POIA1, IA-1=serine proteinase inhibitor; protease- 99.6
2p4e_P 692 Proprotein convertase subtilisin/kexin type 9; pro 99.11
2z30_B65 TK-subtilisin; thermococcus kodakaraensis, hydrola 98.3
2z2z_A 395 TK-subtilisin precursor; thermococcus kodakaraensi 98.13
3afg_A 539 Subtilisin-like serine protease; propeptide, therm 97.92
3t41_A 471 Epidermin leader peptide processing serine protea; 97.77
1r6v_A 671 Subtilisin-like serine protease; sandwich domain, 94.16
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Back     alignment and structure
Probab=99.77  E-value=1.3e-19  Score=123.54  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             CCCeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceec
Q 033460           33 ESAVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQL  111 (119)
Q Consensus        33 ~~~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~l  111 (119)
                      -+++|||+|+++..+.....|.+|+.+++.+. ....++.|+|++.|+||+|+|+++++++|+++|+|.+||||+++++
T Consensus        36 ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~-~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~  113 (114)
T 2w2n_P           36 LPGTYVVVLKEETHLSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  113 (114)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHHHHhhhc-ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence            37899999998765444567889999876531 1234799999999999999999999999999999999999998875



>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B Back     alignment and structure
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Back     alignment and structure
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A Back     alignment and structure
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Back     alignment and structure
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B Back     alignment and structure
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Back     alignment and structure
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Back     alignment and structure
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Back     alignment and structure
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query119
d1scjb_71 Subtilisin prosegment {Bacillus subtilis [TaxId: 1 99.6
d1v5ib172 Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( 99.59
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]
Probab=99.60  E-value=1.3e-15  Score=94.35  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             CeEEEEeCCCCCCCchHHHHHHHHHhhCchhhhhcceeeeeccccccccccCCHHHHHHHhcCCCeEEEEcCCceecc
Q 033460           35 AVQIVYTERPQDEEPESFHLRILSSVLGSEEAAKDALLYSYKTAASGFSAKLTPQQVDEISKQPGVLQVVPSRTLQLH  112 (119)
Q Consensus        35 ~~YIV~m~~~~~~~~~~~h~~~l~s~~~s~~~~~~~i~ysY~~~~~GFaa~lt~~e~~~L~~~pgV~~V~~D~~~~lh  112 (119)
                      ++|||.++++........+.+++.+.       ...+.+.|+ .||||+++|++++++.|+++|+|.+||+|++++.+
T Consensus         2 ~~YIV~fK~~~~~~~~~~~~~~v~~~-------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a~   71 (71)
T d1scjb_           2 KKYIVGFKQTMSAMSSAKKKDVISQK-------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHEY   71 (71)
T ss_dssp             EEEEEEECSSSSCCSHHHHHHHHHTT-------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEEC
T ss_pred             CcEEEEECCCCChHHHHHHHHHHHHc-------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEcC
Confidence            68999999987655555555555432       235899997 69999999999999999999999999999998753



>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} Back     information, alignment and structure