Citrus Sinensis ID: 033468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDND
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccEcccccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATynkwrhpdpyivpwapggskfcrnptppegieIAYDFGKEDND
Flexible Loop (DISEMBL)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANkhvtdldaidRMIDEAEATynkwrhpdpYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDND
Low Complexity Region (SEG)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDND
Disordered region (IsUnstruct)
********AYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRN******IEIAY********
Disordered Region (DISOPRED)
**************AAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAY*F******
Disordered Region (DISEMBL)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDND
Disordered Region (DISPRO)
**********VARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDND
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q945M1	117	NADH dehydrogenase [ubiqu	yes	no	0.983	0.991	0.769	5e-49
Q02369	179	NADH dehydrogenase [ubiqu	yes	no	0.762	0.502	0.340	2e-09
Q9CQJ8	179	NADH dehydrogenase [ubiqu	yes	no	0.703	0.463	0.361	4e-09
Q0MQE8	179	NADH dehydrogenase [ubiqu	yes	no	0.762	0.502	0.340	2e-08
Q0MQE9	179	NADH dehydrogenase [ubiqu	N/A	no	0.737	0.486	0.344	2e-08
Q54NR3	106	NADH dehydrogenase [ubiqu	yes	no	0.737	0.820	0.344	4e-08
Q9Y6M9	179	NADH dehydrogenase [ubiqu	yes	no	0.703	0.463	0.349	4e-08
Q0MQF0	179	NADH dehydrogenase [ubiqu	yes	no	0.703	0.463	0.349	4e-08

>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 1   MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVT 60
           MSG +STAAY ARRAAQKERV+ILYRRALKDTLNWAVHRH+FY+DA DLR +F  N+ V 
Sbjct: 1   MSG-VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVE 59

Query: 61  DLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDN 117
           D+D ID++I   EA YNKWRHPDPYIVPWAPGGSKFCRNPTPP GIEI Y++G EDN
Sbjct: 60  DVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). Is required for correct plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 5  ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
          +S+ AY+      +++V  LY+RAL+   +W +HR  +   A  LR RF+ +K+  D+  
Sbjct: 4  LSSGAYLT----HQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 59

Query: 65 IDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCR 98
            +++ EAE  +   +HP PYI P +PGG+ + R
Sbjct: 60 ATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%)

Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
            +++V  LY+RAL+   +W +HR  +   A  +R RFE +K+  D+    +++ EAE  
Sbjct: 11 THQQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEE 70

Query: 76 YNKWRHPDPYIVPWAPGGSKFCR 98
          + + +HP PYI P +PGG+ F R
Sbjct: 71 FWQNQHPQPYIFPDSPGGTSFER 93

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 5  ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
          +++ AY+  R    ++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+  
Sbjct: 4  LASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVR 59

Query: 65 IDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCR 98
            +++ EAE  +   +HP PYI P +PGG+ + R
Sbjct: 60 ATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query: 12 ARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDE 71
           R    +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ E
Sbjct: 7  GRYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKE 66

Query: 72 AEATYNKWRHPDPYIVPWAPGGSKFCR 98
          AE  +   +HP PYI P +PGG+ + R
Sbjct: 67 AEEEFWYRQHPQPYIFPDSPGGTSYER 93

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q54NR3|NDUB9_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Dictyostelium discoideum GN=ndufb9 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query: 16  AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
           +  ++V  LYR+A+K   +++    +F  +A DLR   +A K+ T+  AI +M+ + E  
Sbjct: 3   SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62

Query: 76  YNKWRHPDPYIVPWAPGGSKFCRNPTP 102
            + W HPDPYI      G+K+ RN  P
Sbjct: 63  NSYWEHPDPYIPCDGINGTKWQRNTAP 89

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
            +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query: 76 YNKWRHPDPYIVPWAPGGSKFCR 98
          +   +HP PYI P +PGG+ + R
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
            +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70

Query: 76 YNKWRHPDPYIVPWAPGGSKFCR 98
          +   +HP PYI P +PGG+ + R
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2139619	117	CIB22 "AT4G34700" [Arabidopsis	0.983	0.991	0.769	9.8e-48
ASPGD|ASPL0000034079	100	AN3467 [Emericella nidulans (t	0.669	0.79	0.493	1.6e-15
CGD|CAL0006170	107	orf19.5547 [Candida albicans (	0.703	0.775	0.4	2.1e-13
UNIPROTKB|Q5AC03	107	CaO19.5547 "Potential mitochon	0.703	0.775	0.4	2.1e-13
UNIPROTKB|Q02369	179	NDUFB9 "NADH dehydrogenase [ub	0.762	0.502	0.340	1.5e-10
MGI|MGI:1913468	179	Ndufb9 "NADH dehydrogenase (ub	0.686	0.452	0.370	2e-10
RGD|1307114	179	Ndufb9 "NADH dehydrogenase (ub	0.686	0.452	0.358	6.6e-10
DICTYBASE|DDB_G0285021	106	DDB_G0285021 "putative NADH de	0.737	0.820	0.344	1.4e-09
UNIPROTKB|E7EWZ0	178	NDUFB9 "NADH dehydrogenase [ub	0.686	0.455	0.358	2.2e-09
UNIPROTKB|Q9Y6M9	179	NDUFB9 "NADH dehydrogenase [ub	0.686	0.452	0.358	2.2e-09

TAIR|locus:2139619 CIB22 "AT4G34700" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 90/117 (76%), Positives = 101/117 (86%)

Query:     1 MSGAISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVT 60
             MSG +STAAY ARRAAQKERV+ILYRRALKDTLNWAVHRH+FY+DA DLR +F  N+ V 
Sbjct:     1 MSG-VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVE 59

Query:    61 DLDAIDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCRNPTPPEGIEIAYDFGKEDN 117
             D+D ID++I   EA YNKWRHPDPYIVPWAPGGSKFCRNPTPP GIEI Y++G EDN
Sbjct:    60 DVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

GO:0003824 "catalytic activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ASPGD|ASPL0000034079 AN3467 [Emericella nidulans (taxid:162425)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 39/79 (49%), Positives = 50/79 (63%)

Query:    21 VQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR 80
             V  LYRR+LK  L+WAVHRH++   A  +R  FEANK++ D      ++ E E     W+
Sbjct:     6 VTSLYRRSLKLALDWAVHRHIWRGQAVYIRSLFEANKNIRDPRQQKVLLRETEKLLETWK 65

Query:    81 HPDPYIVPWAPGGSKFCRN 99
             HPDPY  P APGGSK+ RN
Sbjct:    66 HPDPYRAPTAPGGSKYERN 84

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0006170 orf19.5547 [Candida albicans (taxid:5476)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 34/85 (40%), Positives = 57/85 (67%)

Query:    16 AQKERVQILYRRALKDTLNWAVHRHLFYKDAD-DLRLRFEANKHVTDLDAIDRMIDEAEA 74
             A  +RV  L+R+AL+   + ++ R   Y+DA  ++R +FEANKH++    ++ +I++ +A
Sbjct:    11 ANSKRVTSLFRQALRTAYDHSM-RWDVYRDATINIRRQFEANKHISSQQELEAVINKTKA 69

Query:    75 TYNKWRHPDPYIVPWAPGGSKFCRN 99
                +W+HPDPYI P  PGG+K+ RN
Sbjct:    70 KLAEWKHPDPYIPPCRPGGTKYQRN 94

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AC03 CaO19.5547 "Potential mitochondrial Complex I, LYR_B22_NDUFB9 subunit" [Candida albicans SC5314 (taxid:237561)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 34/85 (40%), Positives = 57/85 (67%)

Query:    16 AQKERVQILYRRALKDTLNWAVHRHLFYKDAD-DLRLRFEANKHVTDLDAIDRMIDEAEA 74
             A  +RV  L+R+AL+   + ++ R   Y+DA  ++R +FEANKH++    ++ +I++ +A
Sbjct:    11 ANSKRVTSLFRQALRTAYDHSM-RWDVYRDATINIRRQFEANKHISSQQELEAVINKTKA 69

Query:    75 TYNKWRHPDPYIVPWAPGGSKFCRN 99
                +W+HPDPYI P  PGG+K+ RN
Sbjct:    70 KLAEWKHPDPYIPPCRPGGTKYQRN 94

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q02369 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/94 (34%), Positives = 55/94 (58%)

Query:     5 ISTAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDA 64
             +S+ AY+  +    ++V  LY+RAL+   +W +HR  +   A  LR RF+ +K+  D+  
Sbjct:     4 LSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 59

Query:    65 IDRMIDEAEATYNKWRHPDPYIVPWAPGGSKFCR 98
               +++ EAE  +   +HP PYI P +PGG+ + R
Sbjct:    60 ATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

MGI|MGI:1913468 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W +HR  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct:    13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72

Query:    78 KWRHPDPYIVPWAPGGSKFCR 98
             + +HP PYI P +PGG+ F R
Sbjct:    73 QNQHPQPYIFPDSPGGTSFER 93

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

RGD|1307114 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 29/81 (35%), Positives = 50/81 (61%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W VHR  +   A  +R RFE +K+  D+    +++ +AE  + 
Sbjct:    13 RQKVLRLYKRALRHLESWCVHRDKYRYLACLMRARFEEHKNEKDMMKATQLLRQAEEEFW 72

Query:    78 KWRHPDPYIVPWAPGGSKFCR 98
             + +HP PYI P +PGG+ + R
Sbjct:    73 QNQHPQPYIFPDSPGGTSYER 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285021 DDB_G0285021 "putative NADH dehydrogenase (ubiquinone) protein 9" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEAT 75
             +  ++V  LYR+A+K   +++    +F  +A DLR   +A K+ T+  AI +M+ + E  
Sbjct:     3 SHSQKVVRLYRKAIKSIRDYSEDYDMFLLNAGDLRASLKAGKNETNPFAIQQMVKQLEDF 62

Query:    76 YNKWRHPDPYIVPWAPGGSKFCRNPTP 102
              + W HPDPYI      G+K+ RN  P
Sbjct:    63 NSYWEHPDPYIPCDGINGTKWQRNTAP 89

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E7EWZ0 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct:    13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query:    78 KWRHPDPYIVPWAPGGSKFCR 98
               +HP PYI P +PGG+ + R
Sbjct:    73 YRQHPQPYIFPDSPGGTSYER 93

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9Y6M9 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query:    18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYN 77
             +++V  LY+RAL+   +W V R  +   A  +R RFE +K+  D+    +++ EAE  + 
Sbjct:    13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query:    78 KWRHPDPYIVPWAPGGSKFCR 98
               +HP PYI P +PGG+ + R
Sbjct:    73 YRQHPQPYIFPDSPGGTSYER 93

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q945M1	NDUB9_ARATH	No assigned EC number	0.7692	0.9830	0.9914	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001036301 hypothetical protein (117 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	9e-04
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	0.001

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 34.9 bits (81), Expect = 9e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 20 RVQILYRRALK--DTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAE 73
           V  LYR+ L+          R  F      +R  F  NK++TD + I+ ++ E +
Sbjct: 2  EVLSLYRQLLREARKFPDYNAREYF---RRRIRDEFRKNKNLTDPEKIEALLKEGK 54

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 20 RVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAE 73
           V  LYR+ L+    +  +    Y     +R  F  NK +TD + I++++ E +
Sbjct: 2  EVLSLYRQLLRAARKFPDYNFREYI-RRRIRDEFRKNKDLTDPEKIEKLLKEGK 54

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG3466	157	consensus NADH:ubiquinone oxidoreductase, NDUFB9/B	100.0
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.6
KOG3801	94	consensus Uncharacterized conserved protein BCN92	99.56
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.55
KOG4620	80	consensus Uncharacterized conserved protein [Funct	99.38
KOG3426	124	consensus NADH:ubiquinone oxidoreductase, NDUFA6/B	99.25
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	97.45
KOG4100	125	consensus Uncharacterized conserved protein [Funct	95.52
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	90.98

>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]

Probab=100.00  E-value=2e-33  Score=205.46  Aligned_cols=110  Identities=44%  Similarity=0.761  Sum_probs=102.4

Q ss_pred             ccHHHhhhhHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhhcCCCC
Q 033468            6 STAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPY   85 (118)
Q Consensus         6 ~~~~~~~~~~~~r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~Hp~Py   85 (118)
                      |+|+++++.++|+++|++|||++||...+|++.|+.+|+.+..||++|++|++ +|..++..||++|+++|+++.||+||
T Consensus         1 s~a~~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~   79 (157)
T KOG3466|consen    1 STAAYFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPY   79 (157)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            58999999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cCCCCCCCcccccCCCCCCC---------eeecccCCCCC
Q 033468           86 IVPWAPGGSKFCRNPTPPEG---------IEIAYDFGKED  116 (118)
Q Consensus        86 ~~p~~pgG~~~~Rn~~~p~~---------~~~~~~~~~~~  116 (118)
                      +||++||||+|+|+..|||.         .+.+++|+..+
T Consensus        80 ifp~spGGssy~R~~~~Pdw~lD~Whpaeka~yp~Yfakr  119 (157)
T KOG3466|consen   80 IFPDSPGGSSYEREPCPPDWCLDDWHPAEKAQYPDYFAKR  119 (157)
T ss_pred             ccCCCCCCCccccCCCChHHhhcccChhhhHhhhHHhhhh
Confidence            99999999999999999654         55566666543

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.60  E-value=2.8e-15  Score=93.42  Aligned_cols=57  Identities=25%  Similarity=0.483  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 033468           19 ERVQILYRRALKDTLNWAVH--RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK   78 (118)
Q Consensus        19 ~rVL~LYR~~LR~~~~~~~~--r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~   78 (118)
                      ++||+|||++||.++.|+..  +..+   ...||++|++|++++||..|+.|+..|+++|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~---~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYI---RAEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            58999999999999988764  3344   368999999999999999999999999999974

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]

Probab=99.56  E-value=1.2e-14  Score=99.74  Aligned_cols=64  Identities=23%  Similarity=0.321  Sum_probs=56.2

Q ss_pred             HhHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhh
Q 033468           15 AAQKERVQILYRRALKDTLNWAVHRHLFY-KDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR   80 (118)
Q Consensus        15 ~~~r~rVL~LYR~~LR~~~~~~~~r~~~r-~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~   80 (118)
                      ..++++|++|||.+||+++.|+.+  +|| +..+++|+.|++|++++||.+|+.|+++|+++|+.+.
T Consensus         3 ~~sr~qvlsLyr~~lr~s~qfp~Y--NyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Levik   67 (94)
T KOG3801|consen    3 MVSRRQVLSLYRNLLRESKQFPQY--NYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIK   67 (94)
T ss_pred             cccHHHHHHHHHHHHHHHhhCCcc--cHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999765  344 3347999999999999999999999999999998765

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.55  E-value=1.4e-14  Score=91.49  Aligned_cols=58  Identities=29%  Similarity=0.496  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHh
Q 033468           19 ERVQILYRRALKDTLNWAVH--RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKW   79 (118)
Q Consensus        19 ~rVL~LYR~~LR~~~~~~~~--r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~   79 (118)
                      ++||+|||++||++..|+.+  +..+   ..+||++|++|++++||++|+.++++|+++|..+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~---~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l   60 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYF---RRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL   60 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence            47999999999999999753  4333   3689999999999999999999999999999875

>KOG4620 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=2.1e-12  Score=85.73  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             hhHhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHhHhhcCC
Q 033468           13 RRAAQKERVQILYRRALKDTLNWAV-HRHLFYKDADDLRLRFEANKHV--TDLDAIDRMIDEAEATYNKWRHPD   83 (118)
Q Consensus        13 ~~~~~r~rVL~LYR~~LR~~~~~~~-~r~~~r~~a~~iR~~Fe~nk~v--tDp~~I~~Ll~~G~~eL~~~~Hp~   83 (118)
                      +.+..++|||+|||.+||+++..+. ....|.   ..|+++|++|+++  +|.-.|++|+..|+++++..+||+
T Consensus         3 rlSgLQrqVlhlYR~~lraa~~Kp~~~~~~~m---~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe   73 (80)
T KOG4620|consen    3 RLSGLQRQVLHLYRDLLRAARGKPGAEARRWM---AFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE   73 (80)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCchHHHHHH---HHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence            5678899999999999999987755 233455   4699999999999  799999999999999999999985

>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]

Probab=99.25  E-value=1.5e-11  Score=87.73  Aligned_cols=74  Identities=24%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhh-cC-CC
Q 033468           11 VARRAAQKERVQILYRRALKDTLNWAVHRHL----FYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR-HP-DP   84 (118)
Q Consensus        11 ~~~~~~~r~rVL~LYR~~LR~~~~~~~~r~~----~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~~~-Hp-~P   84 (118)
                      ++-....|++||.|||++.|++..+..+.+.    ......+||++|.+|.|||||++|+.|+-+|+++|+++. |+ +|
T Consensus        16 S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv~~~kqr   95 (124)
T KOG3426|consen   16 SANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIVDHWKQR   95 (124)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHHHHHhCc
Confidence            3445678999999999999999755433211    112236899999999999999999999999999998876 54 44

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=97.45  E-value=0.00057  Score=46.70  Aligned_cols=56  Identities=20%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhhhhhhHHH------HHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 033468           21 VQILYRRALKDTLNWAVHRHL------FYKDADDL----RLRFEANKHVTDLDAIDRMIDEAEATY   76 (118)
Q Consensus        21 VL~LYR~~LR~~~~~~~~r~~------~r~~a~~i----R~~Fe~nk~vtDp~~I~~Ll~~G~~eL   76 (118)
                      ||+|||.+||+.+.+......      ......+|    +++|+.+++++|+..+..-+.+++.-+
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~   66 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYA   66 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            799999999999987543210      01122467    999999999997776666666655443

>KOG4100 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.046  Score=39.42  Aligned_cols=60  Identities=22%  Similarity=0.213  Sum_probs=43.0

Q ss_pred             HhHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 033468           15 AAQKERVQILYRRALKDTLNWAVH-RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK   78 (118)
Q Consensus        15 ~~~r~rVL~LYR~~LR~~~~~~~~-r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll~~G~~eL~~   78 (118)
                      +.|-.+|--|||+.||.=+--+.. |..=-   ..+|++|+.||++ +|..+.-.+.+.+.-.-.
T Consensus         6 ~~~p~rvrlLYkriLrlHr~lp~~~R~lGD---~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~   66 (125)
T KOG4100|consen    6 LLHPPRVRLLYKRILRLHRGLPAELRALGD---QYVKDEFRRHKTV-NPLEAQGFLTEWERYAVA   66 (125)
T ss_pred             cCCcchHHHHHHHHHHHHccCChHHHHHHH---HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHH
Confidence            344567777999999998765543 22211   3689999999999 888888888776654433

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=90.98  E-value=1.3  Score=27.84  Aligned_cols=52  Identities=17%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 033468           18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMI   69 (118)
Q Consensus        18 r~rVL~LYR~~LR~~~~~~~~r~~~r~~a~~iR~~Fe~nk~vtDp~~I~~Ll   69 (118)
                      |.....||.+.|+.....+.+-.+..+.-..++.++.--+...|.++|+..|
T Consensus         4 r~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    4 REALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            4678899999999999886553332233357888888888899999998765

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00