Citrus Sinensis ID: 033506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALEAESKNEKEKPPKKSKASKRMRKMLELERRLQETEFDRAFRREFWPDNV
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccccHHHHHHHHccccccccccccccccEEEEEEEEEcccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgeelsgssaaitssnIGFQLLKkhgwkegtglgiaeqgrlepirthvkknkrgigaekvkrpkpieALEAEsknekekppkkskASKRMRKMLELERRLQETEFDRAFRREFWPDNV
Flexible Loop (DISEMBL)
mgeelsgssaaitssNIGFQLLKKHGWKEGTGlgiaeqgrlepirthvkknkrgigaekvkrpkpiealeaesknekekppkkskaskrmRKMLElerrlqetefdrafrrefwpdnv
Low Complexity Region (SEG)
MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALeaesknekekppkkskaskrmrkmlelerrlQETEFDRAFRREFWPDNV
Disordered region (IsUnstruct)
***************NIGFQLLKKHGWKEGTGLGIAE*********************************************************************************
Disordered Region (DISOPRED)
*******************QLLKKHGWKEGTG**I**QGRLEPIRTHVKKNKRGI*************************************************FDRAFRREFWPDNV
Disordered Region (DISEMBL)
**********AITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALEA*******************RKMLELERRLQETEFDRAFRREFWPDNV
Disordered Region (DISPRO)
*************SSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNK**I*****************************KASKRMRKMLELERRLQETEFDRAFRREFWPDNV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALEAESKNEKEKPPKKSKASKRMRKMLELERRLQETEFDRAFRREFWPDNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q6DGZ0	262	Coiled-coil domain-contai	yes	no	0.762	0.343	0.413	2e-08
Q6C233	812	Protein SQS1 OS=Yarrowia	yes	no	0.474	0.068	0.517	5e-07
A2A6A1	1505	G patch domain-containing	yes	no	0.381	0.029	0.555	7e-07
Q9UKJ3	1502	G patch domain-containing	yes	no	0.381	0.029	0.555	8e-07
Q09655	371	G patch domain and ankyri	no	no	0.449	0.142	0.471	3e-06
Q2KI19	260	Coiled-coil domain-contai	no	no	0.872	0.396	0.333	7e-06
Q9V7A7	336	G patch domain and ankyri	no	no	0.406	0.142	0.416	1e-05
Q6DF57	261	Coiled-coil domain-contai	no	no	0.516	0.233	0.426	1e-05
Q94C11	443	SURP and G-patch domain-c	no	no	0.406	0.108	0.469	1e-05
Q8N954	259	Coiled-coil domain-contai	no	no	0.872	0.397	0.342	1e-05

>sp|Q6DGZ0|CCD75_DANRE Coiled-coil domain-containing protein 75 OS=Danio rerio GN=ccdc75 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 10  AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEAL 69
           ++I S N GF LL+K G+K G GLG    GR+EP+  ++K ++ GIG E+VK+ K  E L
Sbjct: 66  SSIGSQNKGFALLQKMGYKAGQGLGKEGAGRVEPVPLNIKTDRGGIGMEEVKKRKADEEL 125

Query: 70  EAESK--NEKEKPPKKSKASKRMRKMLELERR 99
           +   +  + K+   KKS    R+RK  E E R
Sbjct: 126 QNYRRKVHMKQHLEKKSIEDFRVRKRTEREER 157

Danio rerio (taxid: 7955)

>sp|Q6C233|SQS1_YARLI Protein SQS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 34/56 (60%)

Query: 2   GEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA 57
           GE +   + AI  SNIG  LL+K GW  G GLG   +G  EPI   VK +KRGIGA
Sbjct: 757 GEIVGHEAPAIDDSNIGRLLLQKMGWTTGEGLGAQSRGISEPIIAKVKISKRGIGA 812

May be involved in splicing.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|A2A6A1|GPTC8_MOUSE G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIG 56
          I S NIG +LL+KHGWK G GLG + QGR +PI   VK +  G+G
Sbjct: 38 IESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMG 82

Mus musculus (taxid: 10090)

>sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIG 56
          I S NIG +LL+KHGWK G GLG + QGR +PI   VK +  G+G
Sbjct: 38 IESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMG 82

Homo sapiens (taxid: 9606)

>sp|Q09655|GPAN1_CAEEL G patch domain and ankyrin repeat-containing protein 1 homolog OS=Caenorhabditis elegans GN=ZK1320.7 PE=4 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query: 8   SSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKV 60
           S   I  SNIG++L+   GW E  GLG    G+  PIRT +K+N+ G+GAEK+
Sbjct: 257 SGIQIGPSNIGYRLMCASGWTEEQGLGRNSDGQRFPIRTILKRNRAGLGAEKL 309

Caenorhabditis elegans (taxid: 6239)

>sp|Q2KI19|CCD75_BOVIN Coiled-coil domain-containing protein 75 OS=Bos taurus GN=CCDC75 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 7   GSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPI 66
           G   A+   N GF LL+K G+K G  LG +  G +EPI  +VK  K GIG E + + K  
Sbjct: 62  GLKNALGCENKGFALLQKMGYKSGQALGKSGDGIVEPIPLNVKTGKSGIGHETLLKRKAE 121

Query: 67  EALEAESKNEKEKPPKKSKASKRMRKMLELERRLQETEFDRAFRR 111
           E LE+  +    K   + +A+++ R  + L+ +  E + +   RR
Sbjct: 122 EKLESYRRKIHMKSQAEERAAEQFR--IRLKNKQDEMKLEGDLRR 164

Bos taurus (taxid: 9913)

>sp|Q9V7A7|GPAN1_DROME G patch domain and ankyrin repeat-containing protein 1 homolog OS=Drosophila melanogaster GN=CG8152 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 12  ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEK 59
           I++ N G QL+ K GW +  GLG ++ GRL P++T ++K + G+G E+
Sbjct: 238 ISAKNRGLQLMVKQGWDQEHGLGPSQSGRLYPVKTVLRKQRTGLGIEQ 285

Drosophila melanogaster (taxid: 7227)

>sp|Q6DF57|CCD75_XENTR Coiled-coil domain-containing protein 75 OS=Xenopus tropicalis GN=ccdc75 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 11  AITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALE 70
           A+ + N GF LL+K G+K+G  LG    G +EPI  ++K  + GIG E++K+ K  E LE
Sbjct: 67  ALGNENKGFALLQKMGYKKGQALGKKGDGIVEPIPLNIKTGRSGIGHEEMKKRKAEENLE 126

Query: 71  A 71
           +
Sbjct: 127 S 127

Xenopus tropicalis (taxid: 8364)

>sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein OS=Arabidopsis thaliana GN=At3g52120 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 10  AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRT-HVKKNKRGIGA 57
           A I + N+G +LL K GWKEG G+G + +G  +PI    VK N  G+GA
Sbjct: 356 AKIQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGA 404

Arabidopsis thaliana (taxid: 3702)

>sp|Q8N954|CCD75_HUMAN Coiled-coil domain-containing protein 75 OS=Homo sapiens GN=CCDC75 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 7   GSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPI 66
           G   A+   N GF LL+K G+K G  LG +  G +EPI  ++K  K GIG E   + K  
Sbjct: 62  GLKNALGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAE 121

Query: 67  EALEAESKNEKEKPPKKSKASKRMRKMLELERRLQETEFDRAFRR 111
           E LE+  K    K   + KA+++ R  + L+ +  E + +   RR
Sbjct: 122 EKLESYRKKIHMKNQAEEKAAEQFR--MRLKNKQDEMKLEGDLRR 164

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
356536473	123	PREDICTED: coiled-coil domain-containing	0.983	0.943	0.622	2e-32
255544157	118	nucleic acid binding protein, putative [	0.966	0.966	0.601	2e-32
224100471	133	predicted protein [Populus trichocarpa]	1.0	0.887	0.563	4e-32
388516687	122	unknown [Medicago truncatula]	1.0	0.967	0.606	2e-31
449458728	126	PREDICTED: G patch domain and ankyrin re	0.957	0.896	0.615	1e-30
225463787	123	PREDICTED: G patch domain and ankyrin re	1.0	0.959	0.601	2e-29
357146779	113	PREDICTED: coiled-coil domain-containing	0.864	0.902	0.605	4e-27
326527615	113	predicted protein [Hordeum vulgare subsp	0.915	0.955	0.637	5e-27
294461428	152	unknown [Picea sitchensis]	0.940	0.730	0.598	7e-27
18415848	141	D111/G-patch domain-containing protein [	0.889	0.744	0.623	3e-26

>gi|356536473|ref|XP_003536762.1| PREDICTED: coiled-coil domain-containing protein 75-like [Glycine max]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 97/122 (79%), Gaps = 6/122 (4%)

Query: 3   EELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE---- 58
           EE+SG + AI SSNIGFQLLKKHGWKEGTGLG++EQGRLEP+ THVK NKRG+GA+    
Sbjct: 2   EEMSGLATAINSSNIGFQLLKKHGWKEGTGLGVSEQGRLEPVETHVKNNKRGLGADKAKK 61

Query: 59  KVKRPKPIEALEAESKNEKEK-PPKKSKA-SKRMRKMLELERRLQETEFDRAFRREFWPD 116
           KV + KP ++  ++  N+++  P KKSK  SKRMRKM E E++++E EF+RAF REFWP+
Sbjct: 62  KVVKAKPDQSDSSKGNNQQDHLPQKKSKTLSKRMRKMQEFEKKMREKEFERAFFREFWPE 121

Query: 117 NV 118
           NV
Sbjct: 122 NV 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544157|ref|XP_002513141.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548152|gb|EEF49644.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 87/118 (73%), Gaps = 4/118 (3%)

Query: 1   MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKV 60
           +G + S  + AI SSNIGFQLLKKHGWKEGTGLGI+EQGRLEP++T+VK NKRG+GA+K+
Sbjct: 5   LGSKSSSPATAINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVQTYVKNNKRGLGAQKL 64

Query: 61  KRPKPIEALEAESKNEKEKPPKKSKASKRMRKMLELERRLQETEFDRAFRREFWPDNV 118
           K+ K      +      E   K    SK+ RKM ELE+RLQE EF+RAF R+FWPDNV
Sbjct: 65  KKTKT----SSHGHKVLEHSTKSKPVSKKQRKMQELEKRLQEKEFERAFYRDFWPDNV 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100471|ref|XP_002311890.1| predicted protein [Populus trichocarpa] gi|222851710|gb|EEE89257.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 15/133 (11%)

Query: 1   MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEK- 59
           MG++  GS+ AI SSNIGFQLLKKHGWKEGTGLGI+EQGRLEP++T++K NKRG+GA+  
Sbjct: 1   MGDQFRGSTTAIDSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVQTYLKNNKRGLGADHN 60

Query: 60  ----VKRPKPIEALEA---------ESKNEKEKPPKKSKA-SKRMRKMLELERRLQETEF 105
               VK+    E+  A         +  N+     +KSKA SK+ RKM ELE+RLQ+ EF
Sbjct: 61  KKLLVKKNNTTESSSAPASSSSSSKDKTNQDRSSSRKSKALSKKQRKMQELEKRLQDKEF 120

Query: 106 DRAFRREFWPDNV 118
           +R F REFWPDNV
Sbjct: 121 ERGFFREFWPDNV 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516687|gb|AFK46405.1| unknown [Medicago truncatula]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 94/122 (77%), Gaps = 4/122 (3%)

Query: 1   MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKV 60
           M E L  ++  I SSNIGFQLLKKHGWKEGTGLGI+EQGRLEP+ T VK NKRG+GA+ V
Sbjct: 1   MEETLGSATTTINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIV 60

Query: 61  KRP--KPIEALEAESKNEKEK-PPKKSKA-SKRMRKMLELERRLQETEFDRAFRREFWPD 116
           K+   KP     ++  N++E+   KK+KA SKR+RKM E+E+++QE EF+RAF REFWP+
Sbjct: 61  KKKVVKPGHGDSSKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPE 120

Query: 117 NV 118
           NV
Sbjct: 121 NV 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458728|ref|XP_004147099.1| PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Cucumis sativus]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 93/117 (79%), Gaps = 4/117 (3%)

Query: 6   SGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKR--P 63
           S S+AAI SSNIGF+LLKKHGW+EGTGLG++EQGRLEP++  VK NKRG+GA+KVK+   
Sbjct: 10  SVSAAAIDSSNIGFRLLKKHGWREGTGLGVSEQGRLEPVQASVKNNKRGLGADKVKKKIK 69

Query: 64  KPIEALEAESKNEKEK-PPKKSKA-SKRMRKMLELERRLQETEFDRAFRREFWPDNV 118
           +  +   ++ KN +E+ PPKK+K  +KRMRKM E ER  QE EF++AF REFWP+NV
Sbjct: 70  ETTDNATSDRKNNQERPPPKKAKGLTKRMRKMQEEERLFQEKEFEQAFFREFWPENV 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463787|ref|XP_002269816.1| PREDICTED: G patch domain and ankyrin repeats-containing protein 1 [Vitis vinifera] gi|297742720|emb|CBI35354.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 96/123 (78%), Gaps = 5/123 (4%)

Query: 1   MGEELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKV 60
           MGE+ + ++A+I SSNIGF+LLKKHGWKEGTGLG++ QGRLEP++ ++KKNKRG+GA+KV
Sbjct: 1   MGEDSAAATASIDSSNIGFKLLKKHGWKEGTGLGVSGQGRLEPVQAYLKKNKRGLGADKV 60

Query: 61  KRPK--PIEALEAESKNEKEKPPKKSKA---SKRMRKMLELERRLQETEFDRAFRREFWP 115
           K+      E L +  K +KE  P + K    SKRM+KMLE E++LQE EF+RAF REFWP
Sbjct: 61  KKTAVGSYENLPSNGKTDKEHLPTRKKGKTVSKRMKKMLEEEKQLQEKEFERAFFREFWP 120

Query: 116 DNV 118
           DNV
Sbjct: 121 DNV 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146779|ref|XP_003574108.1| PREDICTED: coiled-coil domain-containing protein 75-like [Brachypodium distachyon]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 83/119 (69%), Gaps = 17/119 (14%)

Query: 10  AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEAL 69
           A+I SSNIGFQLLKK GWKEGTGLG  EQGRLEP+ T VK NKRG+G+   K PKP   +
Sbjct: 2   ASIGSSNIGFQLLKKSGWKEGTGLGAQEQGRLEPVETRVKNNKRGLGS---KEPKPKPLV 58

Query: 70  EAESKNEKEKPPKKSK----------ASKRMRKMLELERRLQETEFDRAFRREFWPDNV 118
           E    +E EK PK+ K          A+KR+RKM E E+RLQE EF+ AF REFWPDNV
Sbjct: 59  E----DEVEKAPKRPKDTMSTKKAKLAAKRIRKMQEEEKRLQEKEFEIAFFREFWPDNV 113

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326527615|dbj|BAK08082.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 87/113 (76%), Gaps = 5/113 (4%)

Query: 10  AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEAL 69
           ++I SSNIGFQLLKK GWKEGTGLG  EQGRLEP+ T VK NKRG+G+++ K PK  + +
Sbjct: 2   SSIGSSNIGFQLLKKSGWKEGTGLGAQEQGRLEPVETRVKNNKRGLGSKEPK-PKAEDDV 60

Query: 70  E-AESKNEKEKPP--KKSK-ASKRMRKMLELERRLQETEFDRAFRREFWPDNV 118
           E A SK  K+ PP  KK+K A+KR+RKM E E+R QE EF+ AF REFWPDNV
Sbjct: 61  ETAPSKRPKQNPPSTKKAKLAAKRIRKMQEEEKRAQEKEFEIAFFREFWPDNV 113

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461428|gb|ADE76275.1| unknown [Picea sitchensis]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 79/112 (70%), Gaps = 1/112 (0%)

Query: 8   SSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIE 67
           S  A+  SNIGFQLLKK GWKEGTGLG AEQGRL PI THVK +KRGIGAEK  +P    
Sbjct: 41  SRNAVQCSNIGFQLLKKCGWKEGTGLGAAEQGRLHPIETHVKHDKRGIGAEKKLKPVINS 100

Query: 68  ALEAESKNEKEKPPKKSKA-SKRMRKMLELERRLQETEFDRAFRREFWPDNV 118
             +   + + +   KKSK  SKR+RK+   E+R+QE EF+RAF REF PDNV
Sbjct: 101 TPKENDQKQAKTTQKKSKTLSKRLRKLQAEEKRMQEQEFERAFFREFLPDNV 152

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415848|ref|NP_568199.1| D111/G-patch domain-containing protein [Arabidopsis thaliana] gi|26451562|dbj|BAC42878.1| unknown protein [Arabidopsis thaliana] gi|332003934|gb|AED91317.1| D111/G-patch domain-containing protein [Arabidopsis thaliana]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 82/109 (75%), Gaps = 4/109 (3%)

Query: 10  AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEAL 69
           AAI SSNIGFQLLKKHGWKEGTGLGIAEQG L P++   K NKRG+GA   K+P   +  
Sbjct: 37  AAINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGA---KQPAKRKVA 93

Query: 70  EAESKNEKEKPPKKSKASKRMRKMLELERRLQETEFDRAFRREFWPDNV 118
           + ++K+E E   +  K SK+MRKM+E E+ LQE EF+RAF REFWPDNV
Sbjct: 94  QPQAKDE-EVSKQSKKLSKKMRKMMEHEKHLQEKEFERAFFREFWPDNV 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2100549	180	AT3G52350 [Arabidopsis thalian	0.542	0.355	0.656	2.1e-25
TAIR|locus:505006587	141	AT5G08535 [Arabidopsis thalian	0.533	0.446	0.686	9.1e-25
WB|WBGene00013224	511	Y55D9A.2 [Caenorhabditis elega	0.440	0.101	0.5	6.8e-10
ZFIN|ZDB-GENE-040718-89	262	gpatch11 "G patch domain conta	0.508	0.229	0.466	1.9e-08
UNIPROTKB|F1RJ22	312	PINX1 "Uncharacterized protein	0.364	0.137	0.465	8.4e-08
TAIR|locus:2146839	301	AT5G26610 [Arabidopsis thalian	0.466	0.182	0.446	9.9e-08
UNIPROTKB|B0UZ51	356	GPANK1 "G patch domain and ank	0.423	0.140	0.4	3.2e-07
UNIPROTKB|E1C8L8	255	CCDC75 "Uncharacterized protei	0.516	0.239	0.409	5e-07
UNIPROTKB|O95872	356	GPANK1 "G patch domain and ank	0.423	0.140	0.4	5.3e-07
WB|WBGene00014256	371	ZK1320.7 [Caenorhabditis elega	0.466	0.148	0.482	5.4e-07

TAIR|locus:2100549 AT3G52350 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query:     4 ELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRP 63
             E S  S AI+SSNIGFQLLKKHGWKEGTGLGI EQG L P++   K NK+G+GAEK  + 
Sbjct:    69 ESSNPSTAISSSNIGFQLLKKHGWKEGTGLGITEQGILVPLQAEPKHNKQGLGAEKPAKR 128

Query:    64 KPIE 67
             KP +
Sbjct:   129 KPAQ 132

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006587 AT5G08535 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 46/67 (68%), Positives = 52/67 (77%)

Query:     1 MGEELSGSS---AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA 57
             MGE  SGSS   AAI SSNIGFQLLKKHGWKEGTGLGIAEQG L P++   K NKRG+GA
Sbjct:    26 MGES-SGSSSSLAAINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGVGA 84

Query:    58 EKVKRPK 64
             ++  + K
Sbjct:    85 KQPAKRK 91

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

WB|WBGene00013224 Y55D9A.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 151 (58.2 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 26/52 (50%), Positives = 37/52 (71%)

Query:    12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRP 63
             + S N+GF+LLK  GW EG GLG  +QG +EP+ T VK N++G+GA + + P
Sbjct:   431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVATEVKNNRKGLGANEKEPP 482

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040718-89 gpatch11 "G patch domain containing 11" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query:    10 AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEAL 69
             ++I S N GF LL+K G+K G GLG    GR+EP+  ++K ++ GIG E+VK+ K  E L
Sbjct:    66 SSIGSQNKGFALLQKMGYKAGQGLGKEGAGRVEPVPLNIKTDRGGIGMEEVKKRKADEEL 125

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RJ22 PINX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 105 (42.0 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query:    15 SNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA 57
             S  G ++L+K GW +G GLG  EQG  + I+  VK N  G+GA
Sbjct:    27 SKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGA 69

GO:0070034 "telomeric RNA binding" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0007004 "telomere maintenance via telomerase" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

TAIR|locus:2146839 AT5G26610 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 25/56 (44%), Positives = 38/56 (67%)

Query:     4 ELSGSSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEK 59
             E +     I+SSN+GF+LL+K GWK G GLG  EQG  EPI++ ++  + G+G ++
Sbjct:    56 EQASLDVKISSSNVGFRLLQKMGWK-GKGLGKQEQGITEPIKSGIRDRRLGLGKQE 110

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B0UZ51 GPANK1 "G patch domain and ankyrin repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query:    15 SNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPK 64
             S+ GF+LL + GW+ G GLG   +GR  PI T +K+++ G+G     +P+
Sbjct:   256 SSPGFKLLLRRGWEPGMGLGPRGEGRANPIPTVLKRDQEGLGYRSAPQPR 305

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C8L8 CCDC75 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query:     9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEA 68
             S+A+ + N GF LL+K G+K G  LG + +G +EPI  ++K  + G+G E+ K+ K  E 
Sbjct:    64 SSALGNENKGFALLQKMGYKSGQALGKSGEGIVEPIPLNIKTGRSGLGHEEFKKRKAEEK 123

Query:    69 L 69
             L
Sbjct:   124 L 124

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|O95872 GPANK1 "G patch domain and ankyrin repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query:    15 SNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPK 64
             S+ GF+LL + GW+ G GLG   +GR  PI T +K+++ G+G     +P+
Sbjct:   256 SSPGFKLLLRGGWEPGMGLGPRGEGRANPIPTVLKRDQEGLGYRSAPQPR 305

GO:0003676 "nucleic acid binding" evidence=IEA

WB|WBGene00014256 ZK1320.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 122 (48.0 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:     8 SSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEK-VKR 62
             S   I  SNIG++L+   GW E  GLG    G+  PIRT +K+N+ G+GAEK VK+
Sbjct:   257 SGIQIGPSNIGYRLMCASGWTEEQGLGRNSDGQRFPIRTILKRNRAGLGAEKLVKK 312

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080018 hypothetical protein (133 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
pfam01585	45	pfam01585, G-patch, G-patch domain	7e-15
smart00443	47	smart00443, G_patch, glycine rich nucleic binding	7e-14

>gnl|CDD|144978 pfam01585, G-patch, G-patch domain

 Score = 62.9 bits (154), Expect = 7e-15
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 15 SNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE 58
          SNIGF+LL+K GWK G GLG  EQG  EPI   ++ +++G+GAE
Sbjct: 2  SNIGFKLLQKMGWKPGQGLGKNEQGITEPIEAKIRPDRKGLGAE 45

This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines. Length = 45

>gnl|CDD|197727 smart00443, G_patch, glycine rich nucleic binding domain

 Score = 60.3 bits (147), Expect = 7e-14
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE 58
          I++SNIG +LL+K GWKEG GLG  EQG +EPI   +KK+++G+GA 
Sbjct: 1  ISTSNIGAKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGAV 47

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF01585	45	G-patch: G-patch domain; InterPro: IPR000467 The D	99.62
smart00443	47	G_patch glycine rich nucleic binding domain. A pre	99.52
KOG2384	223	consensus Major histocompatibility complex protein	99.52
KOG2809	326	consensus Telomerase elongation inhibitor/RNA matu	99.27
KOG0965	988	consensus Predicted RNA-binding protein, contains	98.94
PF12656	77	G-patch_2: DExH-box splicing factor binding site	98.92
KOG2184	767	consensus Tuftelin-interacting protein TIP39, cont	98.83
KOG2185	486	consensus Predicted RNA-processing protein, contai	98.36
KOG3673	845	consensus FtsJ-like RNA methyltransferase [RNA pro	98.14
KOG1996	378	consensus mRNA splicing factor [RNA processing and	97.97
KOG0154	573	consensus RNA-binding protein RBM5 and related pro	97.95
KOG1994	268	consensus Predicted RNA binding protein, contains	97.85
KOG4315	455	consensus G-patch nucleic acid binding protein [Ge	97.79
KOG4368	757	consensus Predicted RNA binding protein, contains	97.61
KOG2138	883	consensus Predicted RNA binding protein, contains	96.37
KOG1994	268	consensus Predicted RNA binding protein, contains	94.24

>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function

Probab=99.62  E-value=5.9e-16  Score=93.51  Aligned_cols=45  Identities=56%  Similarity=1.006  Sum_probs=43.1

Q ss_pred             CCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCcccccc
Q 033506           14 SSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE   58 (118)
Q Consensus        14 ~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~   58 (118)
                      ++++|++||.+|||++|+|||++.+|+++||++..+.++.|||+.
T Consensus         1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~   45 (45)
T PF01585_consen    1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE   45 (45)
T ss_pred             CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence            478999999999999999999999999999999999999999974

This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular

>smart00443 G_patch glycine rich nucleic binding domain

Probab=99.52  E-value=1.4e-14  Score=87.53  Aligned_cols=46  Identities=59%  Similarity=1.126  Sum_probs=44.2

Q ss_pred             CCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccc
Q 033506           12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA   57 (118)
Q Consensus        12 i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~   57 (118)
                      ++.+++|++||.+|||++|+|||++.+|+++||++..+.++.|||+
T Consensus         1 ~~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~   46 (47)
T smart00443        1 ISTSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA   46 (47)
T ss_pred             CCcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCC
Confidence            4678999999999999999999999999999999999999999997

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=99.52  E-value=1.9e-14  Score=110.98  Aligned_cols=99  Identities=30%  Similarity=0.536  Sum_probs=72.4

Q ss_pred             CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCCCchhhhhhhhhhhcc--CCCchhh-
Q 033506            9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALEAESKNEKE--KPPKKSK-   85 (118)
Q Consensus         9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~~~~~~~~~~~~~~~~--~~~kk~k-   85 (118)
                      +-.|+.+++|+++|.+.||+++.|||.+++|+.+||.+.++.|+.|||+... ..++.+++. -+-++..  .+-+.+. 
T Consensus       122 p~~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~-~~rVthfga-fd~navrr~~p~~vp~~  199 (223)
T KOG2384|consen  122 PHLIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEID-QPRVTHFGA-FDVNAVRRKGPRQVPIQ  199 (223)
T ss_pred             CCcCCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhc-cccccccch-hhHHHHHhcCCccccch
Confidence            4567899999999999999999999999999999999999999999999887 334444431 1222211  1111122 


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHhC
Q 033506           86 ASKRMRKMLELERRLQETEFDRAFRREFW  114 (118)
Q Consensus        86 ~~k~~rk~~e~~k~~~E~~~e~~~r~~f~  114 (118)
                      .++.+|+     ++..|+.||+.||+.|.
T Consensus       200 t~kD~rr-----~e~ke~~~ernlR~~~~  223 (223)
T KOG2384|consen  200 TSKDVRR-----KEAKEKHFERNLRTYMN  223 (223)
T ss_pred             hhHHHHH-----HHHHHHHHHHHHHHhcC
Confidence            3444444     46778899999999873

>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=3.5e-12  Score=104.22  Aligned_cols=57  Identities=39%  Similarity=0.659  Sum_probs=52.4

Q ss_pred             CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCCCc
Q 033506            9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKP   65 (118)
Q Consensus         9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~~~   65 (118)
                      .+++|.+.+|++||.+|||.+|.|||.+.||+..||++.++.|+.|||++.......
T Consensus        20 ~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~ned~W   76 (326)
T KOG2809|consen   20 AWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNNEDQW   76 (326)
T ss_pred             hhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccccccc
Confidence            467789999999999999999999999999999999999999999999998875443

>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]

Probab=98.94  E-value=5.9e-10  Score=99.13  Aligned_cols=56  Identities=38%  Similarity=0.672  Sum_probs=50.1

Q ss_pred             CCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeee-eeCCCccccccCCCCCCch
Q 033506           11 AITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTH-VKKNKRGIGAEKVKRPKPI   66 (118)
Q Consensus        11 ~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~-~k~d~~GLG~~~~~~~~~~   66 (118)
                      .|...|||++||+||||++|+|||..++||++||.+. .+.++.|+|.+.+......
T Consensus       902 KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s~pael~pe  958 (988)
T KOG0965|consen  902 KLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGSQPAELQPE  958 (988)
T ss_pred             hccccchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccCCccccCch
Confidence            4678999999999999999999999999999999885 6889999999988876643

>PF12656 G-patch_2: DExH-box splicing factor binding site

Probab=98.92  E-value=1e-09  Score=73.25  Aligned_cols=52  Identities=27%  Similarity=0.601  Sum_probs=47.9

Q ss_pred             CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCC
Q 033506            9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKV   60 (118)
Q Consensus         9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~   60 (118)
                      ...|+...||..||+-|||++++++|++.++.+.|+....++.+.|||+...
T Consensus        24 Y~~vPVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~~   75 (77)
T PF12656_consen   24 YEAVPVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKPA   75 (77)
T ss_pred             hhhCCHHHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCCC
Confidence            4567889999999999999999999999999999999999999999999753

>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]

Probab=98.83  E-value=1.9e-09  Score=95.98  Aligned_cols=51  Identities=35%  Similarity=0.657  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCC
Q 033506           13 TSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRP   63 (118)
Q Consensus        13 ~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~   63 (118)
                      .+.+||.+||++|||+||.|||+++|||+.||++++++.+.|+|+-.....
T Consensus       114 ~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~~  164 (767)
T KOG2184|consen  114 GTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFETE  164 (767)
T ss_pred             cccchhHHHHHHcCCccccccCccccccccHHhcccCccCccccccccccc
Confidence            578999999999999999999999999999999999999999998765543

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=98.36  E-value=1.9e-07  Score=78.89  Aligned_cols=46  Identities=35%  Similarity=0.633  Sum_probs=41.1

Q ss_pred             CCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccc
Q 033506           12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA   57 (118)
Q Consensus        12 i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~   57 (118)
                      ..+-+||.+||.||||..|.|||++++||+.||.+++-+.+.-|-.
T Consensus       294 ~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLDe  339 (486)
T KOG2185|consen  294 NHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLDE  339 (486)
T ss_pred             cccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHHH
Confidence            3466899999999999999999999999999999999887776654

>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]

Probab=98.14  E-value=1.4e-06  Score=76.41  Aligned_cols=47  Identities=36%  Similarity=0.622  Sum_probs=44.3

Q ss_pred             CCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccC
Q 033506           13 TSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEK   59 (118)
Q Consensus        13 ~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~   59 (118)
                      ..+++..+||.+||++.|+|||+.+||+.+||.+.....++|||...
T Consensus        81 ~y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l  127 (845)
T KOG3673|consen   81 KYLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNL  127 (845)
T ss_pred             ccchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccc
Confidence            36789999999999999999999999999999999999999999865

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.97  E-value=5.3e-06  Score=68.02  Aligned_cols=39  Identities=31%  Similarity=0.623  Sum_probs=34.6

Q ss_pred             cHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCcc
Q 033506           16 NIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRG   54 (118)
Q Consensus        16 ~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~G   54 (118)
                      .+..+||++|||++|+|||+++||+..|+.+.....+.|
T Consensus       213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG  251 (378)
T KOG1996|consen  213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGG  251 (378)
T ss_pred             hHHHHHHHHhCcccccCcCccccccccceeeeeccccCc
Confidence            356899999999999999999999999998887766666

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]

Probab=97.95  E-value=4.6e-06  Score=72.27  Aligned_cols=49  Identities=43%  Similarity=0.803  Sum_probs=47.0

Q ss_pred             CCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCcccccc
Q 033506           10 AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE   58 (118)
Q Consensus        10 ~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~   58 (118)
                      ..|+.+++|.+||.+|||..|+|||...+|+..||++.....+.|||..
T Consensus       507 ~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~  555 (573)
T KOG0154|consen  507 PPIDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK  555 (573)
T ss_pred             ccCCCCccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence            4578999999999999999999999999999999999999999999998

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]

Probab=97.85  E-value=7e-06  Score=65.03  Aligned_cols=55  Identities=33%  Similarity=0.561  Sum_probs=49.8

Q ss_pred             CCCCCCcHHHHHHHhcCCCCCCCCCCCCCC---ccCceeeeeeCCCccccccCCCCCC
Q 033506           10 AAITSSNIGFQLLKKHGWKEGTGLGIAEQG---RLEPIRTHVKKNKRGIGAEKVKRPK   64 (118)
Q Consensus        10 ~~i~~s~~G~kmL~kmGW~~G~GLG~~~qG---i~~PI~~~~k~d~~GLG~~~~~~~~   64 (118)
                      ..|..+++||.+|.+|||+||.-||++..+   +..||...++..+.|+|...+..+.
T Consensus        76 ~~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed~~~~~  133 (268)
T KOG1994|consen   76 RGIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDEDLYNPG  133 (268)
T ss_pred             ccccccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcccccccc
Confidence            356689999999999999999999999999   9999999999999999998766544

>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]

Probab=97.79  E-value=1.5e-05  Score=67.55  Aligned_cols=56  Identities=29%  Similarity=0.601  Sum_probs=45.5

Q ss_pred             CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCCCc
Q 033506            9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKP   65 (118)
Q Consensus         9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~~~   65 (118)
                      -.+|+-..+|+.||.-|||++|.|+|++.|+ +.+....+++.+.|||++.......
T Consensus       148 yeaiPVe~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~~~~~~~  203 (455)
T KOG4315|consen  148 YEAIPVEGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADPALKPKA  203 (455)
T ss_pred             cccCchhHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCccccccc
Confidence            3578899999999999999999999999554 4455567889999999986655443

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=97.61  E-value=4.6e-05  Score=67.06  Aligned_cols=51  Identities=39%  Similarity=0.734  Sum_probs=42.4

Q ss_pred             CCCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCC----ccccccC
Q 033506            8 SSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNK----RGIGAEK   59 (118)
Q Consensus         8 ~~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~----~GLG~~~   59 (118)
                      .+..|.++|.|.+||.+|||. |.|||...+||.+||.+.--.|+    .|+|+..
T Consensus       680 ~s~~lse~NKGhQml~KMGWs-G~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l  734 (757)
T KOG4368|consen  680 NSAPLGEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL  734 (757)
T ss_pred             CCCccccccchhhhHhhcCcc-cCCcccccccccCcccCccccchhhhhcccCccc
Confidence            455689999999999999999 88999999999999987543333    6777755

>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]

Probab=96.37  E-value=0.0023  Score=57.66  Aligned_cols=21  Identities=52%  Similarity=1.189  Sum_probs=19.7

Q ss_pred             CCcHHHHHHHhcCCCCCCCCC
Q 033506           14 SSNIGFQLLKKHGWKEGTGLG   34 (118)
Q Consensus        14 ~s~~G~kmL~kmGW~~G~GLG   34 (118)
                      +..||++||.+|||.+|+|+|
T Consensus       147 s~sIgvrlLrsMGWr~GqgIg  167 (883)
T KOG2138|consen  147 SDSIGVRLLRSMGWREGQGIG  167 (883)
T ss_pred             hhhHHHHHHHHhcCccCCCcC
Confidence            467999999999999999999

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]

Probab=94.24  E-value=0.021  Score=45.58  Aligned_cols=49  Identities=33%  Similarity=0.513  Sum_probs=44.1

Q ss_pred             CCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCC
Q 033506           14 SSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKR   62 (118)
Q Consensus        14 ~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~   62 (118)
                      .+.+++++|.-|||.++.-||.+...+-.|+++-.+.-++|||+..+..
T Consensus        37 ~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~gf   85 (268)
T KOG1994|consen   37 IMRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKPGF   85 (268)
T ss_pred             hhhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCcCh
Confidence            4567899999999999999999999999999999999999999876553

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00