Citrus Sinensis ID: 033513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRREAEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccEEHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHEEEccccccccccccEEEEEccccEEEHHHHHccc
Coil and Loop (DISEMBL)
MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRREAEIARQEARLKMEKENLEKEKSVLMGtasnqdnqdgaleitvSGEKYRCLRFAKAKK
Flexible Loop (DISEMBL)
MSLRIKTVVDKFVQELKealdadiqdrIMKEREMQSYIEEREREVAEREAAWKAELSRREAEIARQEARLKMEKENLEKEKSVLMgtasnqdnqdgaleitvsgekyrCLRFAKAKK
Low Complexity Region (SEG)
MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIeererevaereaaWKAELSrreaeiarqearlkmekenlekekSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Disordered region (IsUnstruct)
******TVVDKFVQEL************************************************************************************TVSGEKYRCLR******
Disordered Region (DISOPRED)
***RIKTVVDKFVQELKEALDADIQDRIMK******************************************************************ALEITVSGEKYRCLRFA****
Disordered Region (DISEMBL)
MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYI***********************EIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Disordered Region (DISPRO)
*SLRIKTVVDKFVQELKEALDADIQDRIMKERE*QSYIEEREREVAEREAAWKAELSRREAEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAExxxxxxxxxxxxxxxxxxxxxxxxxxxxLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
225437000	117	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.991	1e-57
255546702	117	conserved hypothetical protein [Ricinus	1.0	1.0	0.982	4e-57
224102767	117	predicted protein [Populus trichocarpa]	1.0	1.0	0.974	2e-49
351723501	117	uncharacterized protein LOC100527028 [Gl	1.0	1.0	0.948	3e-48
326527483	117	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.940	4e-48
297727101	117	Os09g0491692 [Oryza sativa Japonica Grou	1.0	1.0	0.931	5e-48
18398390	117	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.948	7e-48
357159086	117	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.940	1e-47
242079985	117	hypothetical protein SORBIDRAFT_07g02757	1.0	1.0	0.940	2e-47
326531432	117	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.931	2e-47

>gi|225437000|ref|XP_002277553.1| PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera] gi|147772651|emb|CAN62847.1| hypothetical protein VITISV_010151 [Vitis vinifera]

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/117 (99%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MSLRIK VVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546702|ref|XP_002514410.1| conserved hypothetical protein [Ricinus communis] gi|449454315|ref|XP_004144901.1| PREDICTED: uncharacterized protein LOC101221471 [Cucumis sativus] gi|449471307|ref|XP_004153271.1| PREDICTED: uncharacterized protein LOC101206100 [Cucumis sativus] gi|449500139|ref|XP_004161015.1| PREDICTED: uncharacterized protein LOC101226661 [Cucumis sativus] gi|223546507|gb|EEF48006.1| conserved hypothetical protein [Ricinus communis]

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/117 (98%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MSLRIK VVDKFV+ELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102767|ref|XP_002312794.1| predicted protein [Populus trichocarpa] gi|222849202|gb|EEE86749.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/117 (97%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MS+RIK VVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1   MSMRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723501|ref|NP_001237537.1| uncharacterized protein LOC100527028 [Glycine max] gi|356526836|ref|XP_003532022.1| PREDICTED: uncharacterized protein LOC100818672 [Glycine max] gi|255631398|gb|ACU16066.1| unknown [Glycine max]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/117 (94%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MSLRIK VVDKFVQEL+EALDADIQDRIMK+REMQSYIEEREREVAEREAAWKA+LSRRE
Sbjct: 1   MSLRIKAVVDKFVQELQEALDADIQDRIMKDREMQSYIEEREREVAEREAAWKADLSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKME++NLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK
Sbjct: 61  AEIARQEARLKMERDNLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326527483|dbj|BAK08016.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/117 (94%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MS+RIK VVD+FV+EL+EALDADIQDRIMKEREMQSYI+EREREVAEREAAWKAELSRRE
Sbjct: 1   MSVRIKAVVDRFVKELQEALDADIQDRIMKEREMQSYIQEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297727101|ref|NP_001175914.1| Os09g0491692 [Oryza sativa Japonica Group] gi|215767044|dbj|BAG99272.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202370|gb|EEC84797.1| hypothetical protein OsI_31861 [Oryza sativa Indica Group] gi|222641826|gb|EEE69958.1| hypothetical protein OsJ_29845 [Oryza sativa Japonica Group] gi|255679014|dbj|BAH94642.1| Os09g0491692 [Oryza sativa Japonica Group]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MS+RIK VVD+FV+EL+EALDADIQDR+MKEREMQSYI+EREREVAEREAAWKAELSRRE
Sbjct: 1   MSVRIKAVVDRFVKELQEALDADIQDRVMKEREMQSYIQEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398390|ref|NP_565413.1| uncharacterized protein [Arabidopsis thaliana] gi|297836458|ref|XP_002886111.1| hypothetical protein ARALYDRAFT_900076 [Arabidopsis lyrata subsp. lyrata] gi|21618156|gb|AAM67206.1| unknown [Arabidopsis thaliana] gi|26449597|dbj|BAC41924.1| unknown protein [Arabidopsis thaliana] gi|28416849|gb|AAO42955.1| At2g17350 [Arabidopsis thaliana] gi|297331951|gb|EFH62370.1| hypothetical protein ARALYDRAFT_900076 [Arabidopsis lyrata subsp. lyrata] gi|330251521|gb|AEC06615.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 111/117 (94%), Positives = 115/117 (98%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MSLRIK VVDKFV+ELK+ALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1   MSLRIKLVVDKFVEELKQALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
            EIARQEARLKME+ENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  TEIARQEARLKMERENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357159086|ref|XP_003578334.1| PREDICTED: uncharacterized protein LOC100826185 [Brachypodium distachyon]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/117 (94%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MS+RIK VVD+FV+EL+EALDADIQDR+MKEREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1   MSVRIKAVVDRFVKELQEALDADIQDRVMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079985|ref|XP_002444761.1| hypothetical protein SORBIDRAFT_07g027570 [Sorghum bicolor] gi|241941111|gb|EES14256.1| hypothetical protein SORBIDRAFT_07g027570 [Sorghum bicolor]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/117 (94%), Positives = 114/117 (97%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MS+RIK VVDKFV ELKEALDADIQDRIMKEREMQSYI EREREVAEREAAWKAELSRRE
Sbjct: 1   MSVRIKAVVDKFVMELKEALDADIQDRIMKEREMQSYIAEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLK+E+ENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  AEIARQEARLKVERENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326531432|dbj|BAK05041.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 116/117 (99%)

Query: 1   MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60
           MS+RIK VVD+FV+ELKEALDADIQDR+M+EREMQSYIEEREREVAEREAAWKAELSRRE
Sbjct: 1   MSVRIKAVVDRFVKELKEALDADIQDRVMREREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
           AEIARQEARLKME+ENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct: 61  AEIARQEARLKMERENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2827566	117	AT2G17350 "AT2G17350" [Arabido	1.0	1.0	0.649	4.7e-32

TAIR|locus:2827566 AT2G17350 "AT2G17350" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 76/117 (64%), Positives = 79/117 (67%)

Query:     1 MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIXXXXXXXXXXXXXWKAELSXXX 60
             MSLRIK VVDKFV+ELK+ALDADIQDRIMKEREMQSYI             WKAELS   
Sbjct:     1 MSLRIKLVVDKFVEELKQALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
                                  SVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct:    61 TEIARQEARLKMERENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.129   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117        80   0.00091  102 3  10 22  0.40    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  120 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.57u 0.25s 9.82t   Elapsed:  00:00:01
  Total cpu time:  9.57u 0.25s 9.82t   Elapsed:  00:00:01
  Start:  Thu May  9 16:28:43 2013   End:  Thu May  9 16:28:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023709001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_31, whole genome shotgun sequence); (117 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035100001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (207 aa)					•				0.447

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
PTZ00266	1021	NIMA-related protein kinase; Provisional	89.93
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	83.07
PTZ00266	1021	NIMA-related protein kinase; Provisional	81.57

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=89.93  E-value=3.2  Score=38.87  Aligned_cols=7  Identities=57%  Similarity=0.957  Sum_probs=2.7

Q ss_pred             hhhhhhh
Q 033513           73 EKENLEK   79 (117)
Q Consensus        73 er~nlek   79 (117)
                      |++.+|+
T Consensus       516 e~e~~e~  522 (1021)
T PTZ00266        516 ERDRLEK  522 (1021)
T ss_pred             HHHHHHH
Confidence            3333333

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=83.07  E-value=17  Score=32.17  Aligned_cols=75  Identities=31%  Similarity=0.432  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhchHHHHH-----------HHhHHHHhHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 033513            6 KTVVDKFVQELKEALDADIQDR-----------IMKEREMQSYIEERE---REVAEREAAWKAELSRREAEIARQEARLK   71 (117)
Q Consensus         6 kavv~~fv~~lkeal~adiqdr-----------imkeremqsy~eere---revaereaawkaelsrreaei~~qearl~   71 (117)
                      -.+|.+=|++|-.-|.+||..-           .--|+.++.-.+..|   .|.+.|++--.++-+|.-.-.....+.|+
T Consensus       276 P~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLr  355 (442)
T PF06637_consen  276 PKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALR  355 (442)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888888888888532           222333444444443   45666777777777766554445568999


Q ss_pred             hhhhhhhhh
Q 033513           72 MEKENLEKE   80 (117)
Q Consensus        72 mer~nleke   80 (117)
                      -|||+|+||
T Consensus       356 kerd~L~ke  364 (442)
T PF06637_consen  356 KERDSLAKE  364 (442)
T ss_pred             HHHHHHHHH
Confidence            999999886

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=81.57  E-value=12  Score=35.13  Aligned_cols=60  Identities=32%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             HHHHhchHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q 033513           16 LKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRREAEIARQEARLKMEKENLE   78 (117)
Q Consensus        16 lkeal~adiqdrimkeremqsy~eererevaereaawkaelsrreaei~~qearl~mer~nle   78 (117)
                      .+|.++..-+.|+.+||+=.   |.+|||-.|||..=+..+-|.|.|-++...|-++|++..+
T Consensus       467 ~~er~Erer~er~erer~Er---er~erEr~erer~erer~~r~e~er~~r~e~e~~e~~rr~  526 (1021)
T PTZ00266        467 ERERLERERMERIERERLER---ERLERERLERDRLERDRLDRLERERVDRLERDRLEKARRN  526 (1021)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444321   2233344444444444455555555555455555555433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 19/92 (20%)

Query: 6   KTVVDKFVQELKEALDAD---IQDRIMKE-----REMQSYIEEREREVAEREAAWKAELS 57
           + +V KFV   +E L  +   +   I  E        + YIE+R+R   + +   K  +S
Sbjct: 76  EEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 58  RREAEIARQEARLKMEKENLEKEKSVL---MG 86
           R +  +  ++A L      L   K+VL   + 
Sbjct: 133 RLQPYLKLRQA-LL----ELRPAKNVLIDGVL 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00