Citrus Sinensis ID: 033514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEccccHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHcccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
MSKSNFKIEHEFEKRRAEAERIRekypdripvivekaersdiptidkkkylvpadltvgQFVYVIRKRIKLSAEKAIFIFvdnvlpptgaimstiydekkdedgFLYVTYSGENTFG
Flexible Loop (DISEMBL)
msksnfkiehefekrraeaerirekypdripvivekaersdiptidkkkylvpadltvgQFVYVIRKRIKLSAEKAIFifvdnvlpptgAIMSTIYDEKKDEDGFLYVTYSGENTFG
Low Complexity Region (SEG)
MSKSNFKIehefekrraeaerirekYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Disordered region (IsUnstruct)
****************************RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY*******
Disordered Region (DISOPRED)
***SNFK*EHEFEKRRAEAERIREKYPDRIPVIV**********IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Disordered Region (DISEMBL)
MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Disordered Region (DISPRO)
*****FKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q8VYK7	121	Autophagy-related protein	yes	no	1.0	0.966	0.888	5e-56
Q9LZZ9	121	Autophagy-related protein	no	no	1.0	0.966	0.846	2e-53
Q6Z1D5	120	Autophagy-related protein	yes	no	1.0	0.975	0.837	4e-53
A2YS06	120	Autophagy-related protein	N/A	no	1.0	0.975	0.837	4e-53
Q8S927	119	Autophagy-related protein	no	no	1.0	0.983	0.803	5e-52
Q7XPR1	119	Autophagy-related protein	yes	no	1.0	0.983	0.820	1e-51
A2XXR7	119	Autophagy-related protein	N/A	no	1.0	0.983	0.820	1e-51
Q8S926	122	Autophagy-related protein	no	no	0.974	0.934	0.833	1e-51
P87068	184	Autophagy-related protein	N/A	no	0.982	0.625	0.826	3e-51
Q8H715	116	Autophagy-related protein	N/A	no	0.974	0.982	0.833	7e-51

>sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1

 Score =  216 bits (549), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/117 (88%), Positives = 113/117 (96%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS+FK EH+ EKRRAEA RIREKYPDRIPVIVEKAE+SDIPTIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++Y+EKKD+DGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZZ9|ATG8G_ARATH Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/117 (84%), Positives = 110/117 (94%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           MS  +F+ +H+FEKR+AEA RIREKY DR+PVIVEK+E+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+MSTIYDE K+EDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z1D5|ATG8C_ORYSJ Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1

 Score =  206 bits (523), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/117 (83%), Positives = 108/117 (92%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M++S+FK+EH  E+R+AEA RIREKYPDRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYV+RKRIKLSAEKAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2

 Score =  206 bits (523), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/117 (83%), Positives = 108/117 (92%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M++S+FK+EH  E+R+AEA RIREKYPDRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYV+RKRIKLSAEKAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8S927|ATG8C_ARATH Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1

 Score =  202 bits (514), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 94/117 (80%), Positives = 106/117 (90%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+ S+FK+EH  E+R+ E+ RIREKYPDRIPVIVE+AERSD+P IDKKKYLVPADLTVGQ
Sbjct: 1   MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYV+RKRIKLSAEKAIF+FV N LPPT A+MS IYDE KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XPR1|ATG8B_ORYSJ Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 106/117 (90%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS+FK++H  E+R+AEA RIREKY DRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYV+RKRIKLS EKAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XXR7|ATG8B_ORYSI Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 106/117 (90%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS+FK++H  E+R+AEA RIREKY DRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYV+RKRIKLS EKAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8S926|ATG8E_ARATH Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=2

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 110/114 (96%)

Query: 4   SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVY 63
           S FK++++FEKR+AEA RIREKYPDRIPVIVEKAE+S++P IDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 64  VIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           VIRKRIKLSAEKAIFIFVDNVLPPTG +MS++Y++KKDEDGFLY+TYSGENTFG
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|P87068|ATG8_LACBI Autophagy-related protein 8 OS=Laccaria bicolor GN=ATG8 PE=2 SV=2

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 105/115 (91%)

Query: 3   KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
           +S FK EH FEKR+AEAERIR+KYPDRIPVI EKA+R+DIPTIDKKKYLVP+DLTVGQFV
Sbjct: 2   RSKFKDEHPFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFV 61

Query: 63  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           YVIRKRIKL+ EKAIFIFVD VLPPT A+MS IY+E KDED FLYV+YSGENTFG
Sbjct: 62  YVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFG 116

Involved in the differentiation and development in response to plant signals leading to symbiosis. May be involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Laccaria bicolor (taxid: 29883)

>sp|Q8H715|ATG8_PHYIN Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 105/114 (92%)

Query: 4   SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVY 63
           S+FK EH FEKR+AEA+RIR KYPDRIPVI EKA+RSDIP IDKKKYLVPADLTVGQFVY
Sbjct: 2   SSFKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVY 61

Query: 64  VIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           VIRKRIKLS EKAIFIF++NVLPPT A+MS IY+E+KD DGFLY+TYSGENTFG
Sbjct: 62  VIRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Phytophthora infestans (taxid: 4787)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
224067661	122	predicted protein [Populus trichocarpa]	1.0	0.959	0.940	1e-56
351727823	122	uncharacterized protein LOC100499835 [Gl	1.0	0.959	0.931	4e-56
359806567	122	uncharacterized protein LOC100818620 [Gl	1.0	0.959	0.931	6e-56
357476885	122	Autophagy-related protein 8f [Medicago t	1.0	0.959	0.931	8e-56
21615419	121	microtubule associated protein [Cicer ar	1.0	0.966	0.931	8e-56
388516607	122	unknown [Lotus japonicus]	1.0	0.959	0.931	1e-55
356540577	123	PREDICTED: autophagy-related protein 8f-	1.0	0.951	0.923	1e-55
255541196	117	gaba(A) receptor-associated protein, put	1.0	1.0	0.914	2e-55
409168205	122	autophagy 8c [Petunia x hybrida]	1.0	0.959	0.914	3e-55
224071541	122	predicted protein [Populus trichocarpa]	1.0	0.959	0.923	3e-55

>gi|224067661|ref|XP_002302521.1| predicted protein [Populus trichocarpa] gi|222844247|gb|EEE81794.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/117 (94%), Positives = 113/117 (96%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS+FK EH+FEKRRAEA RIREKYPDRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MTKSSFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDENKDEDGFLYVTYSGENTFG 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727823|ref|NP_001236662.1| uncharacterized protein LOC100499835 [Glycine max] gi|255627035|gb|ACU13862.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 113/117 (96%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS+IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSSIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806567|ref|NP_001241265.1| uncharacterized protein LOC100818620 [Glycine max] gi|255638500|gb|ACU19559.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MTKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476885|ref|XP_003608728.1| Autophagy-related protein 8f [Medicago truncatula] gi|355509783|gb|AES90925.1| Autophagy-related protein 8f [Medicago truncatula] gi|388516669|gb|AFK46396.1| unknown [Medicago truncatula]

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21615419|emb|CAD33929.1| microtubule associated protein [Cicer arietinum]

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516607|gb|AFK46365.1| unknown [Lotus japonicus]

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRRAEAVRIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540577|ref|XP_003538764.1| PREDICTED: autophagy-related protein 8f-like [Glycine max]

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/117 (92%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M++S FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MARSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541196|ref|XP_002511662.1| gaba(A) receptor-associated protein, putative [Ricinus communis] gi|223548842|gb|EEF50331.1| gaba(A) receptor-associated protein, putative [Ricinus communis]

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/117 (91%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS+FK EH+FEKRRAEA RIR KYPDR+PVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MTKSSFKFEHDFEKRRAEAVRIRAKYPDRVPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            VYVIRKRIKLSAEKAIFIFVDNVLPPTGA+MSTIYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  LVYVIRKRIKLSAEKAIFIFVDNVLPPTGAVMSTIYDEKKDEDGFLYVTYSGENTFG 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409168205|dbj|BAM62966.1| autophagy 8c [Petunia x hybrida]

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/117 (91%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS+FK EH+ EKRRAEA RIREKY DRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEASRIREKYSDRIPVIVEKAEKSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS+IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSSIYDEKKDEDGFLYVTYSGENTFG 117

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071541|ref|XP_002303509.1| predicted protein [Populus trichocarpa] gi|222840941|gb|EEE78488.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/117 (92%), Positives = 112/117 (95%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
           M+KS FK EH+ EKRRAEA RIREKYPDRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS+IY+EKKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSSIYEEKKDEDGFLYVTYSGENTFG 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2130759	121	ATG8F "AT4G16520" [Arabidopsis	1.0	0.966	0.769	1.7e-43
TAIR|locus:2055537	122	ATG8E "AUTOPHAGY 8E" [Arabidop	0.786	0.754	0.869	5.9e-41
TAIR|locus:2101816	121	ATG8G "AUTOPHAGY 8G" [Arabidop	0.786	0.760	0.902	5.9e-41
TAIR|locus:2120618	137	APG8A "AT4G21980" [Arabidopsis	1.0	0.854	0.709	3.3e-40
TAIR|locus:2125791	122	ATG8B "AT4G04620" [Arabidopsis	1.0	0.959	0.666	6.1e-39
TAIR|locus:2058939	164	ATG8D [Arabidopsis thaliana (t	0.786	0.560	0.836	1.3e-38
ASPGD|ASPL0000029812	118	atgH [Emericella nidulans (tax	0.786	0.779	0.858	3.4e-38
POMBASE|SPBP8B7.24c	121	atg8 "autophagy associated pro	0.786	0.760	0.815	1.9e-37
UNIPROTKB|Q51MW4	123	ATG8 "Autophagy-related protei	0.786	0.747	0.826	2.1e-36
CGD|CAF0006954	135	AUT7 [Candida albicans (taxid:	0.786	0.681	0.782	1.5e-35

TAIR|locus:2130759 ATG8F "AT4G16520" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 90/117 (76%), Positives = 98/117 (83%)

Query:     1 MSKSNFKIXXXXXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
             M+KS+FK                  YPDRIPVIVEKAE+SDIPTIDKKKYLVPADLTVGQ
Sbjct:     1 MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query:    61 FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             FVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++Y+EKKD+DGFLYVTYSGENTFG
Sbjct:    61 FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

TAIR|locus:2055537 ATG8E "AUTOPHAGY 8E" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 80/92 (86%), Positives = 90/92 (97%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             YPDRIPVIVEKAE+S++P IDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL
Sbjct:    27 YPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 86

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPTG +MS++Y++KKDEDGFLY+TYSGENTFG
Sbjct:    87 PPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2101816 ATG8G "AUTOPHAGY 8G" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 83/92 (90%), Positives = 89/92 (96%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             Y DR+PVIVEK+E+SDIP IDKKKYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVL
Sbjct:    26 YSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVL 85

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPTGA+MSTIYDE K+EDGFLYVTYSGENTFG
Sbjct:    86 PPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 83/117 (70%), Positives = 92/117 (78%)

Query:     1 MSKSNFKIXXXXXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
             M+KS+FKI                 YPDRIPVIVEKA +SD+P IDKKKYLVPADLTVGQ
Sbjct:    16 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 75

Query:    61 FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             FVYV+RKRIKL AEKAIF+FV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:    76 FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 132

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 78/117 (66%), Positives = 91/117 (77%)

Query:     1 MSKSNFKIXXXXXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
             M K++FK+                 YP+R+PVIVEKA +SD+P IDKKKYLVPADLT+GQ
Sbjct:     1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQ 60

Query:    61 FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             FVYV+RKRIKL AEKAIF+FV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:    61 FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2058939 ATG8D [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 77/92 (83%), Positives = 86/92 (93%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             YPDRIPVIVE+AE+SD+P ID+KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+L
Sbjct:    70 YPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL 129

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPT AIMS IY+E KDEDGFLY++YSGENTFG
Sbjct:   130 PPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 161

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 79/92 (85%), Positives = 84/92 (91%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             Y DRIPVI EK E+SDI TIDKKKYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VL
Sbjct:    25 YADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVL 84

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPT A+MS+IY+E KDEDGFLY+TYSGENTFG
Sbjct:    85 PPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0031386 "protein tag" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

POMBASE|SPBP8B7.24c atg8 "autophagy associated protein Atg8" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 75/92 (81%), Positives = 83/92 (90%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             YPDRIPVI EK ++SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIF+D +L
Sbjct:    25 YPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEIL 84

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPT A+MSTIY+E K EDGFLY+TYSGENTFG
Sbjct:    85 PPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=ISO

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IC

GO:0032258 "CVT pathway" evidence=ISO

GO:0033110 "CVT vesicle membrane" evidence=IEA

UNIPROTKB|Q51MW4 ATG8 "Autophagy-related protein 8" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 76/92 (82%), Positives = 82/92 (89%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             Y DRIPVI EK E+SDI TIDKKKYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV + L
Sbjct:    25 YTDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQDTL 84

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPT A+MS+IY+  KDEDGFLY+TYSGENTFG
Sbjct:    85 PPTAALMSSIYELHKDEDGFLYITYSGENTFG 116

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=IMP

GO:0016239 "positive regulation of macroautophagy" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

CGD|CAF0006954 AUT7 [Candida albicans (taxid:5476)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 72/92 (78%), Positives = 82/92 (89%)

Query:    26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
             + DR+PVI EK E SDIP IDK+KYLVP DLTVGQFVYVIRKRIKL +EKAIFIFV+++L
Sbjct:    25 FKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDIL 84

Query:    86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
             PPT A++STIY+E KDEDGFLYV YSGENTFG
Sbjct:    85 PPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7E8H4	ATG8_SCLS1	No assigned EC number	0.8173	0.9829	0.9349	N/A	no
Q51MW4	ATG8_MAGO7	No assigned EC number	0.8086	0.9829	0.9349	N/A	no
P0CO55	ATG8_CRYNB	No assigned EC number	0.8119	1.0	0.9285	N/A	no
P0CO54	ATG8_CRYNJ	No assigned EC number	0.8119	1.0	0.9285	yes	no
Q5QFG1	ATG8_PICAN	No assigned EC number	0.7391	0.9829	0.92	N/A	no
Q2XPP5	ATG8A_ORYSI	No assigned EC number	0.7521	1.0	0.9831	N/A	no
Q69RC4	ATG8A_ORYSJ	No assigned EC number	0.7521	1.0	0.9831	no	no
Q8S927	ATG8C_ARATH	No assigned EC number	0.8034	1.0	0.9831	no	no
Q8S926	ATG8E_ARATH	No assigned EC number	0.8333	0.9743	0.9344	no	no
Q755X2	ATG8_ASHGO	No assigned EC number	0.7017	0.9743	0.95	yes	no
Q8LEM4	ATG8A_ARATH	No assigned EC number	0.7777	1.0	0.9590	no	no
Q4P2U6	ATG8_USTMA	No assigned EC number	0.8260	0.9829	0.9745	N/A	no
Q8J282	ATG8_PODAS	No assigned EC number	0.8347	0.9829	0.9504	yes	no
Q8NJJ4	ATG8_PICPA	No assigned EC number	0.7478	0.9829	0.92	yes	no
A6RPU4	ATG8_BOTFB	No assigned EC number	0.8173	0.9829	0.9349	N/A	no
Q9LZZ9	ATG8G_ARATH	No assigned EC number	0.8461	1.0	0.9669	no	no
Q9XEB5	ATG8B_ARATH	No assigned EC number	0.7350	1.0	0.9590	no	no
A6ZKM4	ATG8_YEAS7	No assigned EC number	0.7565	0.9829	0.9829	N/A	no
Q1E4K5	ATG8_COCIM	No assigned EC number	0.8260	0.9829	0.9829	N/A	no
A7TDU7	ATG8_VANPO	No assigned EC number	0.7478	0.9829	0.9745	N/A	no
O94272	ATG8_SCHPO	No assigned EC number	0.7652	0.9829	0.9504	yes	no
A1D3N4	ATG8_NEOFI	No assigned EC number	0.8347	0.9829	0.9745	N/A	no
Q4WJ27	ATG8_ASPFU	No assigned EC number	0.8347	0.9829	0.9745	yes	no
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.8205	1.0	0.9831	yes	no
Q6BT31	ATG8_DEBHA	No assigned EC number	0.7391	0.9829	0.8455	yes	no
Q6Z1D5	ATG8C_ORYSJ	No assigned EC number	0.8376	1.0	0.975	yes	no
A1CQS1	ATG8_ASPCL	No assigned EC number	0.8347	0.9829	0.9745	N/A	no
P87068	ATG8_LACBI	No assigned EC number	0.8260	0.9829	0.625	N/A	no
A2YS06	ATG8C_ORYSI	No assigned EC number	0.8376	1.0	0.975	N/A	no
A5DWI6	ATG8_LODEL	No assigned EC number	0.7391	0.9829	0.7876	N/A	no
Q5B2U9	ATG8_EMENI	No assigned EC number	0.8347	0.9829	0.9745	yes	no
Q8VYK7	ATG8F_ARATH	No assigned EC number	0.8888	1.0	0.9669	yes	no
Q8H715	ATG8_PHYIN	No assigned EC number	0.8333	0.9743	0.9827	N/A	no
Q6FXR8	ATG8_CANGA	No assigned EC number	0.7478	0.9829	0.9745	yes	no
A2QPN1	ATG8_ASPNC	No assigned EC number	0.8347	0.9829	0.9745	yes	no
Q6CMF8	ATG8_KLULA	No assigned EC number	0.7217	0.9829	0.9274	yes	no
A2XXR7	ATG8B_ORYSI	No assigned EC number	0.8205	1.0	0.9831	N/A	no
Q0V3Y9	ATG8_PHANO	No assigned EC number	0.8347	0.9829	0.9663	N/A	no
Q9SL04	ATG8D_ARATH	No assigned EC number	0.8034	1.0	0.975	no	no
Q8WZY7	ATG8_NEUCR	No assigned EC number	0.8347	0.9829	0.9504	N/A	no
P0C075	ATG8_CANAL	No assigned EC number	0.7478	0.9829	0.8518	N/A	no
A3GFU8	ATG8_PICST	No assigned EC number	0.7391	0.9829	0.8273	yes	no
Q2UBH5	ATG8_ASPOR	No assigned EC number	0.8347	0.9829	0.9745	yes	no
P38182	ATG8_YEAST	No assigned EC number	0.7565	0.9829	0.9829	yes	no
Q2GVL1	ATG8_CHAGB	No assigned EC number	0.8260	0.9829	0.9504	N/A	no
Q6C794	ATG8_YARLI	No assigned EC number	0.8347	0.9829	0.9274	yes	no
Q0C804	ATG8_ASPTN	No assigned EC number	0.8347	0.9829	0.9745	N/A	no
A4LA70	ATG8_COLLN	No assigned EC number	0.8347	0.9829	0.9504	N/A	no
Q86CR8	ATG8_DICDI	No assigned EC number	0.7130	0.9743	0.9344	yes	no
A7KAL9	ATG8_PENCW	No assigned EC number	0.8347	0.9829	0.9745	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00021333	hypothetical protein (123 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IV.2775.1	hypothetical protein (677 aa)					•	•	•		0.844

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	1e-68
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	3e-60
PTZ00380	121	PTZ00380, PTZ00380, microtubule-associated protein	2e-14
pfam04110	87	pfam04110, APG12, Ubiquitin-like autophagy protein	1e-05
cd01612	87	cd01612, APG12_C, Ubiquitin-like domain of APG12	3e-05

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score =  200 bits (512), Expect = 1e-68
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 6   FKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVI 65
           FK  H FEKR+AE ERIR KYPDRIPVIVE+  +SD+P +DKKKYLVP+DLTVGQFVY+I
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 66  RKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           RKRI+L  EKA+F+FV+N LPPT A MS +Y+E KDEDGFLY+TYS E TFG
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score =  179 bits (457), Expect = 3e-60
 Identities = 80/104 (76%), Positives = 94/104 (90%)

Query: 14  KRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSA 73
           KR+AE+E+IREKYPDRIPVI+EKA  SD+P IDKKKYLVPADLTVGQF+Y+IRKRI+L  
Sbjct: 1   KRQAESEKIREKYPDRIPVIIEKASGSDLPDIDKKKYLVPADLTVGQFIYIIRKRIQLRP 60

Query: 74  EKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           EKAIF+FV+N LPPT A MS +Y+E+KDEDGFLY+ YSGENTFG
Sbjct: 61  EKAIFLFVNNTLPPTSATMSALYEEEKDEDGFLYMVYSGENTFG 104

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional

 Score = 64.4 bits (156), Expect = 2e-14
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)

Query: 13  EKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYL-VPADLTVGQFVYVIRKRIKL 71
           E RRAE  R++ KYP  + V+VE AE++      K  +L +P D TV +    +R+ +  
Sbjct: 11  EARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGT 66

Query: 72  SAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           SA+K + + ++   P   A +  I D  K +DGFLYV+   E   G
Sbjct: 67  SAKK-VTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMG 111

Length = 121

>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 41  DIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT-GAIMSTIYDEK 99
           D P + K K+ V    T    +  ++K +KL A  ++F++V+N   P+   I+  +Y+  
Sbjct: 11  DAPILKKSKFKVNPSQTFASVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECF 70

Query: 100 KDEDGFLYVTYSGENTFG 117
              DG L + Y     +G
Sbjct: 71  G-TDGKLVLNYCISVAWG 87

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy. Length = 87

>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 41  DIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT-GAIMSTIYDEK 99
             P + +K + + A  +    +  +RKR+KL A  ++F++++N   P+    +  +Y   
Sbjct: 11  SAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF 70

Query: 100 KDEDGFLYVTYSGENTFG 117
              +G L V+Y     FG
Sbjct: 71  GT-NGELIVSYCKTVAFG 87

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG1654	116	consensus Microtubule-associated anchor protein in	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	100.0
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	99.93
KOG3439	116	consensus Protein conjugation factor involved in a	99.92
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	97.01
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	95.79
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	92.45
PF13019	162	Telomere_Sde2: Telomere stability and silencing	91.92
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	91.35
KOG2660	331	consensus Locus-specific chromosome binding protei	89.19
KOG2976	278	consensus Protein involved in autophagy and nutrie	87.28
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	86.89
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	86.74
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	83.24
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	82.66
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	81.1
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	80.57
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	80.11

>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]

Probab=100.00  E-value=1.6e-54  Score=298.25  Aligned_cols=116  Identities=72%  Similarity=1.166  Sum_probs=114.0

Q ss_pred             CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514            2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   81 (117)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V   81 (117)
                      |+++||++||||+|++|+++||+|||+|||||||+..++++|+|||+|||||+++|||||+.+||+||+|+|++|+||||
T Consensus         1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV   80 (116)
T KOG1654|consen    1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV   80 (116)
T ss_pred             CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ||.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus        81 n~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   81 NNTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             cCcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence            999998899999999999999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=7.7e-53  Score=293.24  Aligned_cols=112  Identities=72%  Similarity=1.206  Sum_probs=111.1

Q ss_pred             ccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514            6 FKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL   85 (117)
Q Consensus         6 fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~   85 (117)
                      ||++||||+|++|+++||+|||++||||||+++++++|+|+++||+||+++||+||+.+||++|+|++++||||||||++
T Consensus         1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~   80 (112)
T cd01611           1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL   80 (112)
T ss_pred             CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        86 p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      |++|++||+||++|||+||||||+||+++|||
T Consensus        81 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~tfG  112 (112)
T cd01611          81 PPTSATMSQLYEEHKDEDGFLYMTYSSEETFG  112 (112)
T ss_pred             CCchhHHHHHHHHhCCCCCEEEEEEeccccCC
Confidence            99999999999999999999999999999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=100.00  E-value=3e-50  Score=282.73  Aligned_cols=109  Identities=34%  Similarity=0.595  Sum_probs=106.3

Q ss_pred             ccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceE-EecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033514            4 SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD   82 (117)
Q Consensus         4 ~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kf-lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn   82 (117)
                      ++||++||||+|++|+++||+|||++||||||++++++    +++|| |||+++||+||+.+||+||+|++++ +|||||
T Consensus         2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn   76 (121)
T PTZ00380          2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE   76 (121)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence            68999999999999999999999999999999998887    79999 6999999999999999999999999 999999


Q ss_pred             CCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           83 NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        83 ~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      |++|+++++||+||++|||+||||||+||+++|||
T Consensus        77 n~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG  111 (121)
T PTZ00380         77 GSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMG  111 (121)
T ss_pred             CccCCccchHHHHHHHhcCCCCeEEEEEccccccc
Confidence            99999999999999999999999999999999999

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=1.7e-49  Score=273.30  Aligned_cols=104  Identities=64%  Similarity=1.142  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHH
Q 033514           14 KRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS   93 (117)
Q Consensus        14 ~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~   93 (117)
                      +|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||++|++++++||||||||++|+++++||
T Consensus         1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~   80 (104)
T PF02991_consen    1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG   80 (104)
T ss_dssp             HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred             CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHcCCCCCeEEEEecCcccCC
Q 033514           94 TIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        94 ~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      +||++|||+||||||+||++++||
T Consensus        81 elY~~~kdeDGFLY~~Ys~e~tFG  104 (104)
T PF02991_consen   81 ELYEKYKDEDGFLYMTYSSEETFG  104 (104)
T ss_dssp             HHHHHHB-TTSSEEEEEESSSSBC
T ss_pred             HHHHHhCCCCCeEEEEeccccccC
Confidence            999999999999999999999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=2.3e-34  Score=192.51  Aligned_cols=85  Identities=24%  Similarity=0.469  Sum_probs=79.4

Q ss_pred             EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCC-CCCccchHHHHHhHcCCCCCeEEEEe
Q 033514           32 VIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVTY  110 (117)
Q Consensus        32 VIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~-~p~~~~~l~~lY~~~kd~DGfLyv~Y  110 (117)
                      |.|.-.+.|++|+|+++||+||+++||++|+.+||++|++++++||||||||+ .|++|++||+||++| |+||||||+|
T Consensus         2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y   80 (87)
T cd01612           2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY   80 (87)
T ss_pred             eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence            44444556899999999999999999999999999999999999999999997 589999999999999 8999999999


Q ss_pred             cCcccCC
Q 033514          111 SGENTFG  117 (117)
Q Consensus       111 s~~~~fG  117 (117)
                      |.++|||
T Consensus        81 s~~~afG   87 (87)
T cd01612          81 CKTVAFG   87 (87)
T ss_pred             eCccccC
Confidence            9999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.93  E-value=2e-26  Score=154.04  Aligned_cols=81  Identities=23%  Similarity=0.502  Sum_probs=60.0

Q ss_pred             ccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEEEEecCcc
Q 033514           36 KAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTYSGEN  114 (117)
Q Consensus        36 ~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~  114 (117)
                      -.+-+++|.|+++||.|.++.|++.++.+|||+|+++++++||+|||+++ |++|+++|+||+||+ .||.|.|+||.++
T Consensus         6 fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~t~   84 (87)
T PF04110_consen    6 FKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSKTP   84 (87)
T ss_dssp             EEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS
T ss_pred             EEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEeccc
Confidence            33448999999999999999999999999999999999999999999966 999999999999997 7999999999999


Q ss_pred             cCC
Q 033514          115 TFG  117 (117)
Q Consensus       115 ~fG  117 (117)
                      |||
T Consensus        85 A~G   87 (87)
T PF04110_consen   85 AWG   87 (87)
T ss_dssp             ---
T ss_pred             ccC
Confidence            999

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=6.4e-25  Score=151.57  Aligned_cols=85  Identities=25%  Similarity=0.497  Sum_probs=78.5

Q ss_pred             EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEEEEe
Q 033514           32 VIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTY  110 (117)
Q Consensus        32 VIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLyv~Y  110 (117)
                      |.|.-.+-+++|.|+++||.|+.+.||+.++.+|||+|+|.+.++|||||||++ |++|+.+|+||+||+ .||.|.++|
T Consensus        31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lvl~Y  109 (116)
T KOG3439|consen   31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLVLNY  109 (116)
T ss_pred             EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEEEEE
Confidence            334334458999999999999999999999999999999999999999999977 999999999999995 699999999


Q ss_pred             cCcccCC
Q 033514          111 SGENTFG  117 (117)
Q Consensus       111 s~~~~fG  117 (117)
                      |...|||
T Consensus       110 c~s~A~G  116 (116)
T KOG3439|consen  110 CISVAWG  116 (116)
T ss_pred             eeecccC
Confidence            9999999

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.01  E-value=0.0014  Score=49.46  Aligned_cols=100  Identities=14%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             ccHHHHHHHHHHHH---hhCCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhh--CCCCCceEEEEE
Q 033514           10 HEFEKRRAEAERIR---EKYPDRIPVIVEKAERSDIPTIDKKKYLVP---ADLTVGQFVYVIRKRI--KLSAEKAIFIFV   81 (117)
Q Consensus        10 ~~~e~R~~e~~~i~---~k~p~~ipVIve~~~~~~~p~l~k~Kflvp---~~~tv~~~~~~lrk~L--~l~~~~slfl~V   81 (117)
                      +.|++=..-..++.   ..-..+|||.|-....  .|.++..--...   ...|++++...+=-.+  .-+......+++
T Consensus        88 ~~~~~f~~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~ii  165 (197)
T PF04106_consen   88 HDFDQFWSINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVII  165 (197)
T ss_dssp             T-HHHHHHHHHHHS----SS-SB--EEEEE-SS----EE----B----TT---BTGGGHHHHHTTT--T------EEEEE
T ss_pred             hCHHHHHHHHHHHHhhcCCCcceeEEEEEeCCC--cceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEE
Confidence            44444444555555   5667899999977643  333332221211   2346776655443222  112345567888


Q ss_pred             cCCCCCccchHHHHHhHcCCCCCeEEEEec
Q 033514           82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYS  111 (117)
Q Consensus        82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys  111 (117)
                      ++.-++.|+.|..||+++.-.||||||.-.
T Consensus       166 hGI~ipldtpl~~l~~~l~~~D~FLhivv~  195 (197)
T PF04106_consen  166 HGIEIPLDTPLQWLYENLSYPDGFLHIVVR  195 (197)
T ss_dssp             TTEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred             eCeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence            998788899999999999999999999753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=95.79  E-value=0.09  Score=42.46  Aligned_cols=87  Identities=16%  Similarity=0.281  Sum_probs=71.3

Q ss_pred             CCCcccEEEEccCCCCCCCCccc-----------------eEEecCCCchHHHHHHHHHhh--------------CCCCC
Q 033514           26 YPDRIPVIVEKAERSDIPTIDKK-----------------KYLVPADLTVGQFVYVIRKRI--------------KLSAE   74 (117)
Q Consensus        26 ~p~~ipVIve~~~~~~~p~l~k~-----------------Kflvp~~~tv~~~~~~lrk~L--------------~l~~~   74 (117)
                      -+.||+-++.++..+..|.+...                 |.-.+.-+.|.-+...|-.|+              .+.++
T Consensus       211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~  290 (331)
T PF11816_consen  211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE  290 (331)
T ss_pred             CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence            34677788888875555555555                 888999999999999999999              45788


Q ss_pred             ceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514           75 KAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG  112 (117)
Q Consensus        75 ~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~  112 (117)
                      +.|=|+||+.+.+++++|+.|=.-+=-..|-|.+.|..
T Consensus       291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~  328 (331)
T PF11816_consen  291 EWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR  328 (331)
T ss_pred             ceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence            99999999999888999999988854458899999964

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=92.45  E-value=0.3  Score=30.15  Aligned_cols=50  Identities=14%  Similarity=0.178  Sum_probs=38.8

Q ss_pred             ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514           46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   95 (117)
Q Consensus        46 ~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l   95 (117)
                      +...|.|..+.+++.++...+++.++++.+++-|+.++.-..++.|++++
T Consensus        11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen   11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            35678999999999999999999999985677777777555555666654

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=91.92  E-value=1.4  Score=32.67  Aligned_cols=78  Identities=18%  Similarity=0.396  Sum_probs=56.1

Q ss_pred             ccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc-C-CC-CCccchHHHHHhHcCCCCCeE
Q 033514           30 IPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N-VL-PPTGAIMSTIYDEKKDEDGFL  106 (117)
Q Consensus        30 ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn-~-~~-p~~~~~l~~lY~~~kd~DGfL  106 (117)
                      |-|+|...+.-.+|  ....+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+
T Consensus         1 i~Vlvss~~g~~lp--~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~   77 (162)
T PF13019_consen    1 INVLVSSFDGLTLP--PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFI   77 (162)
T ss_pred             CeEEEecCCCCCCC--CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-Cce
Confidence            34667555432222  3446779999999999999999999988877888886 4 55 57777888888777543 676


Q ss_pred             EEEe
Q 033514          107 YVTY  110 (117)
Q Consensus       107 yv~Y  110 (117)
                      .+..
T Consensus        78 ~l~l   81 (162)
T PF13019_consen   78 TLRL   81 (162)
T ss_pred             EEEE
Confidence            6654

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=91.35  E-value=1.2  Score=29.37  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             EecCCCchHHHHHHHHHhhCCCCCceEEEEEc----C-CCCCccchHHHHHhHcCCCCCeEEE
Q 033514           51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD----N-VLPPTGAIMSTIYDEKKDEDGFLYV  108 (117)
Q Consensus        51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn----~-~~p~~~~~l~~lY~~~kd~DGfLyv  108 (117)
                      -||.+++++++...|++||++.+ +.+-|.-.    + ..|-.|+.|...+.+=+  ||-|-+
T Consensus        16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTL   75 (80)
T cd06406          16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTL   75 (80)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEE
Confidence            48999999999999999999984 45666553    2 23567889999998876  666654

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=89.19  E-value=0.91  Score=37.13  Aligned_cols=73  Identities=21%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             CCCCCccceEE-ecCCCchHHHHHHHHHhhC-CCCCceEEEEEcCCCCCccchHHHHHhHcCCC--CCeEEEEecCcc
Q 033514           41 DIPTIDKKKYL-VPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE--DGFLYVTYSGEN  114 (117)
Q Consensus        41 ~~p~l~k~Kfl-vp~~~tv~~~~~~lrk~L~-l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~--DGfLyv~Ys~~~  114 (117)
                      .++.|. ++|+ ++...|+.++..++++++. ++....+=+++|+.+..-+.||.++.-.+...  ||-|-+.|...+
T Consensus       159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p  235 (331)
T KOG2660|consen  159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP  235 (331)
T ss_pred             cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEecccc
Confidence            355555 5664 8999999999999999998 77777777888988899999999998887664  999999998543

>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]

Probab=87.28  E-value=9.1  Score=30.53  Aligned_cols=92  Identities=14%  Similarity=0.305  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHHHHhh----CCCcccEEEEcc--CC-------CCCCCCccceEEecCCCchHHHHHHHHHhhC-------
Q 033514           11 EFEKRRAEAERIREK----YPDRIPVIVEKA--ER-------SDIPTIDKKKYLVPADLTVGQFVYVIRKRIK-------   70 (117)
Q Consensus        11 ~~e~R~~e~~~i~~k----~p~~ipVIve~~--~~-------~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~-------   70 (117)
                      .|++=-.-+.++..-    .+-+||+.+-..  +.       ...|.     +. .++-...-+-.++.+++.       
T Consensus       161 ~fd~F~~Is~Kl~~s~e~n~~r~IPL~iy~sq~~t~r~f~~~~~~P~-----~~-~~d~~~stlge~l~d~~~~s~~s~d  234 (278)
T KOG2976|consen  161 NFDDFWEISNKLMESVEDNRSRHIPLRIYTSQVKTARDFRTSLTFPC-----IS-QPDGSLSTLGEFLKDRLPDSLDSKD  234 (278)
T ss_pred             cHHHHHHHHHHHHhhccccccccceeEeeccccccccchhhccccce-----ee-cCchhhhhhhHHHHhhcccccCccc
Confidence            344444445555554    889999999733  11       22331     11 223333444445566664       


Q ss_pred             -CCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEe
Q 033514           71 -LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY  110 (117)
Q Consensus        71 -l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Y  110 (117)
                       ...++.  +.+.+--++..+.+..||+.....||||||+.
T Consensus       235 ~~~~~~~--viihGIei~l~tpL~~l~~~L~ypD~FLHI~l  273 (278)
T KOG2976|consen  235 DINGNDP--VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL  273 (278)
T ss_pred             cccccCc--eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence             112233  44555557888899999999999999999975

>cd00196 UBQ Ubiquitin-like proteins

Probab=86.89  E-value=3.4  Score=22.36  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514           45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL   85 (117)
Q Consensus        45 l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~   85 (117)
                      -....+.++.+.|++++...|..+.+.. .+...|++|+..
T Consensus         7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~   46 (69)
T cd00196           7 GKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKI   46 (69)
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeE
Confidence            3456678889999999999999999854 445677777754

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>smart00213 UBQ Ubiquitin homologues

Probab=86.74  E-value=2.4  Score=24.80  Aligned_cols=46  Identities=11%  Similarity=0.049  Sum_probs=34.7

Q ss_pred             ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033514           48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   94 (117)
Q Consensus        48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~   94 (117)
                      ..+-|+.+.|++++...|.++.+++++. +=|+.++.....+.+|++
T Consensus        12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~   57 (64)
T smart00213       12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD   57 (64)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence            3467999999999999999999997664 455567765555666654

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=83.24  E-value=1.4  Score=26.68  Aligned_cols=46  Identities=15%  Similarity=0.098  Sum_probs=37.2

Q ss_pred             eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514           49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   95 (117)
Q Consensus        49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l   95 (117)
                      .+-|+.+.||+++...|..+.++++++ +-|+.++.....+.+|+++
T Consensus         9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~   54 (69)
T PF00240_consen    9 TLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY   54 (69)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred             EEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence            457999999999999999999988775 4566677666777888765

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=82.66  E-value=7.9  Score=26.09  Aligned_cols=71  Identities=18%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CCCCCccceEEecCCCchHHHHHHHHHhh-CCCCCceEEEEEcCCCCCccchHHHHHhHc---------CCCCC----eE
Q 033514           41 DIPTIDKKKYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVLPPTGAIMSTIYDEK---------KDEDG----FL  106 (117)
Q Consensus        41 ~~p~l~k~Kflvp~~~tv~~~~~~lrk~L-~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~---------kd~DG----fL  106 (117)
                      .+|+|.=. +--|.+.|+.++...||.++ .-.....|=|.-++.+.+.++.++..-...         |..++    -.
T Consensus        10 sipDl~L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~~~~~~~~~gk~~~~~~~~~~   88 (97)
T PF10302_consen   10 SIPDLPLD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLPTARSSKGKGKAPERQEAPRI   88 (97)
T ss_pred             CCCCceee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccccccCccccCcCccCCCCCeE
Confidence            67774310 01458899999999999999 445566777777887765666565554444         23333    78


Q ss_pred             EEEecC
Q 033514          107 YVTYSG  112 (117)
Q Consensus       107 yv~Ys~  112 (117)
                      ||+++.
T Consensus        89 yIhCsI   94 (97)
T PF10302_consen   89 YIHCSI   94 (97)
T ss_pred             EEEEec
Confidence            888764

They contain a characteristic GFDRL sequence motif.

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=81.10  E-value=6.5  Score=25.60  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=43.7

Q ss_pred             CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC
Q 033514           43 PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD  101 (117)
Q Consensus        43 p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd  101 (117)
                      |.+.-+.+-||++..+..++.+--...++++.++.-+--++.--.+.++-|+++-+|..
T Consensus        13 p~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs   71 (76)
T PF03671_consen   13 PKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS   71 (76)
T ss_dssp             STS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred             CCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence            56667888999999999999999999999999883332223336778899999999964

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=80.57  E-value=5.3  Score=26.63  Aligned_cols=52  Identities=12%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             cceEEecC-----CCchHHHHHHHHHhhCCCCCceEEE-EEcC--C-C-CCccchHHHHHhH
Q 033514           47 KKKYLVPA-----DLTVGQFVYVIRKRIKLSAEKAIFI-FVDN--V-L-PPTGAIMSTIYDE   98 (117)
Q Consensus        47 k~Kflvp~-----~~tv~~~~~~lrk~L~l~~~~slfl-~Vn~--~-~-p~~~~~l~~lY~~   98 (117)
                      ...|.+|.     +.++.++..-|++++++.+...+-| |-+.  . + ...|..+.+.-+.
T Consensus        11 ~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~   72 (91)
T cd06398          11 LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY   72 (91)
T ss_pred             EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence            45778885     7999999999999999987444443 5442  2 2 3666666655555

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=80.11  E-value=3.5  Score=26.09  Aligned_cols=45  Identities=13%  Similarity=0.077  Sum_probs=37.4

Q ss_pred             EecCCCchHHHHHHHHHhhCCCCCceEEEE--EcCCCCCccchHHHH
Q 033514           51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSTI   95 (117)
Q Consensus        51 lvp~~~tv~~~~~~lrk~L~l~~~~slfl~--Vn~~~p~~~~~l~~l   95 (117)
                      =|+.+.|+++|...|....+++++.-=.+|  +.+..+..+.+++++
T Consensus        15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~   61 (74)
T cd01813          15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL   61 (74)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence            488999999999999999999988666776  456677778888876

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		4e-39
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		4e-39
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		5e-39
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		4e-38
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		4e-38
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		4e-38
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		1e-31
3m95_A	125	Crystal Structure Of Autophagy-Related Protein Atg8		9e-30
1kjt_A	119	Crystal Structure Of The Gaba(A) Receptor Associate		9e-30
1gnu_A	117	Gaba(a) Receptor Associated Protein Gabarap Length		9e-30
1kot_A	119	Solution Structure Of Human Gaba Receptor Associate		1e-29
3h9d_A	119	Crystal Structure Of Trypanosoma Brucei Atg8 Length		6e-28
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		6e-28
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		3e-27
4eoy_A	128	Plasmodium Falciparum Atg8 In Complex With Plasmodi		3e-24
3vvw_B	128	Ndp52 In Complex With Lc3c Length = 128		7e-19
1v49_A	120	Solution Structure Of Microtubule-Associated Protei		2e-16
2zjd_A	130	Crystal Structure Of Lc3-P62 Complex Length = 130		2e-16
2k6q_A	121	Lc3 P62 Complex Structure Length = 121		3e-16
2z0e_B	129	The Crystal Structure Of Human Atg4b- Lc3(1-124) Co		4e-16
1ugm_A	125	Crystal Structure Of Lc3 Length = 125		5e-16
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		8e-16

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score =  155 bits (393), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 82/92 (89%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           +P+RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ L
Sbjct: 26  FPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 85
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 86  PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score =  155 bits (393), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 82/92 (89%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           +P+RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ L
Sbjct: 25  FPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 84
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 85  PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score =  155 bits (392), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 82/92 (89%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           +P+RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ L
Sbjct: 28  FPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 87
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 88  PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score =  152 bits (385), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           + +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ L
Sbjct: 28  FKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 87
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 88  PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           + +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ L
Sbjct: 27  FKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 86
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 87  PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           + +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ L
Sbjct: 27  FKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 86
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 87  PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 75/92 (81%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEK   S I  IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +
Sbjct: 25  YPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTV 84
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           P +   M  +Y+++KDEDGFLYV YSGENTFG
Sbjct: 85  PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125

Iteration: 1
 Score =  125 bits (313), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 72/92 (78%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEKA ++ +  +DKKKYLVP+DLTVGQF ++IRKRI L  E A+F FV+NV+
Sbjct: 33  YPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVI 92
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A M ++Y E  DED FLY+ +S EN +G
Sbjct: 93  PPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124

>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119

Iteration: 1
 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+
Sbjct: 27  YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 86
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct: 87  PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117

Iteration: 1
 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+
Sbjct: 25  YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 84
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct: 85  PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+
Sbjct: 27  YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 86
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct: 87  PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119

Iteration: 1
 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 72/92 (78%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           +PDR+P+I EK   SDI  +D+ K+LVP+DLTVGQFV V+RKR++L AE A+F++ ++ +
Sbjct: 28  HPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTV 87
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            P+ A M+ IY + KDEDGFLY+ YSGE TFG
Sbjct: 88  LPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 70/89 (78%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +
Sbjct: 29  YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTI 88
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYSGEN 114
           PPT A M  +Y++  +ED FLYV YS E+
Sbjct: 89  PPTSATMGQLYEDNHEEDYFLYVAYSDES 117

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
           YPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +
Sbjct: 24  YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTI 83
Query: 86  PPTGAIMSTIYDEKKDEDGFLYVTYS 111
           PPT A M  +Y++  +ED FLYV YS
Sbjct: 84  PPTSATMGQLYEDNHEEDYFLYVAYS 109

>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 73/101 (72%), Gaps = 9/101 (8%)
Query: 26  YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSA---------EKA 76
           YP+RIPV++E+A RS++P I+KKK+LVP ++ VG+F +++ + I  SA         E+ 
Sbjct: 28  YPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERT 87
Query: 77  IFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           I++FV+N++P TG +M  +Y+  KDEDG+LY+ YS E++ G
Sbjct: 88  IYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYSSESSLG 128

>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAERSD-IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN- 83
           +P++IPV+VE+  R   +P +DK K+LVP +LT+ QF+ +IR R+ L A +A ++ V+N 
Sbjct: 35  FPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNK 94
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            L    A M+ IY + KDEDGF+Y+TY+ + TFG
Sbjct: 95  SLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128

>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
           +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 27  HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 86
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            +      +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct: 87  SMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120

>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
           +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 32  HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            +      +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct: 92  SMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
           +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 28  HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 87
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            +      +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct: 88  SMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121

>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
           +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 32  HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            +      +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct: 92  SMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125

>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
           +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 32  HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            +      +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct: 92  SMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26  YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
           +P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ +
Sbjct: 28  HPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQH 87
Query: 84  VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            +      ++ IY+++KDEDGFLY+ Y+ + TFG
Sbjct: 88  SMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
3rui_B	118	Autophagy-related protein 8; autophagosome formati	9e-53
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	3e-52
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	5e-51
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	3e-50
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	6e-47
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	4e-46
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	2e-05
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	4e-05

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score =  160 bits (407), Expect = 9e-53
 Identities = 87/115 (75%), Positives = 100/115 (86%)

Query: 3   KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
           KS FK E+ FEKR+AE+ERI +++ +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFV
Sbjct: 4   KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63

Query: 63  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           YVIRKRI L  EKAIFIFV++ LPPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 64  YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score =  159 bits (403), Expect = 3e-52
 Identities = 69/115 (60%), Positives = 88/115 (76%)

Query: 3   KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
           K  FK +H  E R  E+ +IR KYPDR+PVIVEK   S I  IDK+KYLVP+D+TV QF+
Sbjct: 2   KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61

Query: 63  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           ++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTFG
Sbjct: 62  WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score =  156 bits (396), Expect = 5e-51
 Identities = 70/115 (60%), Positives = 89/115 (77%)

Query: 3   KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
           K  +K EH FEKR+AE E+IR KYPDR+PVIVEKA ++ +  +DKKKYLVP+DLTVGQF 
Sbjct: 10  KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 69

Query: 63  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           ++IRKRI L  E A+F FV+NV+PPT A M ++Y E  DED FLY+ +S EN +G
Sbjct: 70  FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score =  154 bits (390), Expect = 3e-50
 Identities = 61/117 (52%), Positives = 89/117 (76%)

Query: 1   MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQ 60
              S +K+ H FE R+++A ++RE++PDR+P+I EK   SDI  +D+ K+LVP+DLTVGQ
Sbjct: 3   KKDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQ 62

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           FV V+RKR++L AE A+F++ ++ + P+ A M+ IY + KDEDGFLY+ YSGE TFG
Sbjct: 63  FVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score =  146 bits (369), Expect = 6e-47
 Identities = 44/118 (37%), Positives = 77/118 (65%), Gaps = 2/118 (1%)

Query: 2   SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAER-SDIPTIDKKKYLVPADLTVGQ 60
           S+  FK    FE+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + +
Sbjct: 8   SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67

Query: 61  FVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct: 68  LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score =  143 bits (362), Expect = 4e-46
 Identities = 62/107 (57%), Positives = 83/107 (77%)

Query: 5   NFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYV 64
            +K +H FE R+ E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++
Sbjct: 3   QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62

Query: 65  IRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 111
           IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS
Sbjct: 63  IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Length = 96

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 41  DIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEK 99
             P + + K+ V         +  +R+++      ++F++V++   P     +  +Y+  
Sbjct: 23  GAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNF 79

Query: 100 KDEDGFLYVTYSGENTFG 117
              DG L V Y+    +G
Sbjct: 80  G-FDGKLVVNYACSMAWG 96

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Length = 297

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 5   NFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLV-PADLTVGQFVY 63
              I   F+     + +I    P  IP+I++ +  S    I +    +   + T+     
Sbjct: 178 GSVITRNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEG 237

Query: 64  VIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVT 109
            I    +      + +    +  P   ++  +Y + +  DGFLY+T
Sbjct: 238 DILDVKEGINGNDVMVICQGIEIPWHMLLYDLYSKLRSFDGFLYIT 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	100.0
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	100.0
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	96.16
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	95.8
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	95.57
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	93.84
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	85.68
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	85.25
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	84.46
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	83.51
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	82.3
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	82.08
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	80.06

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=9.4e-56  Score=309.30  Aligned_cols=116  Identities=75%  Similarity=1.181  Sum_probs=112.3

Q ss_pred             CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514            2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   81 (117)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V   81 (117)
                      |+++||++||||+|++|+++||+|||+|||||||+++++++|+|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus         3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V   82 (118)
T 3rui_B            3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV   82 (118)
T ss_dssp             ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred             CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ||++|++|++||+||++|||+||||||+||+++|||
T Consensus        83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred             CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            999999999999999999999999999999999999

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=1.5e-55  Score=310.79  Aligned_cols=116  Identities=60%  Similarity=1.043  Sum_probs=114.0

Q ss_pred             CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514            2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   81 (117)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V   81 (117)
                      |+++||++||||+|++|+++||+|||+|||||||+++++++|+|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus         9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V   88 (125)
T 3m95_A            9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV   88 (125)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred             ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ||++|++|++||+||++|||+||||||+||+++|||
T Consensus        89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG  124 (125)
T 3m95_A           89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG  124 (125)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC-
T ss_pred             CCccCCccchHHHHHHHcCCCCCeEEEEecCccccC
Confidence            999999999999999999999999999999999999

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=1.4e-54  Score=303.73  Aligned_cols=114  Identities=54%  Similarity=0.976  Sum_probs=111.1

Q ss_pred             ccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033514            4 SNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN   83 (117)
Q Consensus         4 ~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~   83 (117)
                      ++||++||||+|++|+++||+|||+|||||||+++++++|+|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus         6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~   85 (119)
T 3h9d_A            6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND   85 (119)
T ss_dssp             CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred             cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        84 ~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ++|++|++||+||++|||+||||||+||+++|||
T Consensus        86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG  119 (119)
T 3h9d_A           86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG  119 (119)
T ss_dssp             EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred             cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence            9999999999999999999999999999999999

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=100.00  E-value=8.1e-53  Score=293.95  Aligned_cols=116  Identities=59%  Similarity=1.018  Sum_probs=114.2

Q ss_pred             CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514            2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   81 (117)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V   81 (117)
                      |+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|++++||||||
T Consensus         1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v   80 (117)
T 1eo6_A            1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV   80 (117)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred             CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ||++|++|++||+||++|||+||||||+||+++|||
T Consensus        81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG  116 (117)
T 1eo6_A           81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG  116 (117)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred             CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCC
Confidence            999999999999999999999999999999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=100.00  E-value=8.7e-53  Score=298.49  Aligned_cols=115  Identities=37%  Similarity=0.773  Sum_probs=113.0

Q ss_pred             CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE-
Q 033514            2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSD-IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-   79 (117)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~-~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl-   79 (117)
                      |+ +||++||||+|++|+++||+|||+|||||||++++++ +|.|+++||+||+++||++|+.+||++|+|++++|||| 
T Consensus         9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~   87 (130)
T 2zjd_A            9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL   87 (130)
T ss_dssp             CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred             hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence            45 8999999999999999999999999999999999999 99999999999999999999999999999999999999 


Q ss_pred             EEcCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           80 FVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        80 ~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ||||++|++|++||+||++|||+||||||+||+++|||
T Consensus        88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG  125 (130)
T 2zjd_A           88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG  125 (130)
T ss_dssp             ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred             EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccC
Confidence            99999999999999999999999999999999999998

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=100.00  E-value=2.6e-48  Score=268.50  Aligned_cols=110  Identities=56%  Similarity=1.028  Sum_probs=107.5

Q ss_pred             CccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033514            3 KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD   82 (117)
Q Consensus         3 ~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn   82 (117)
                      +++||++||||+|++|+++||++||++||||||++.++++|.|+++||+||.++||++|+.+||++|++++++|||||||
T Consensus         1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn   80 (110)
T 2r2q_A            1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN   80 (110)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred             CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514           83 NVLPPTGAIMSTIYDEKKDEDGFLYVTYSG  112 (117)
Q Consensus        83 ~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~  112 (117)
                      |++|++|++||+||++|+|+||||||+||+
T Consensus        81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~  110 (110)
T 2r2q_A           81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD  110 (110)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred             CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence            999999999999999999999999999985

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=9.9e-36  Score=199.58  Aligned_cols=85  Identities=26%  Similarity=0.461  Sum_probs=80.0

Q ss_pred             EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEEEEe
Q 033514           32 VIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTY  110 (117)
Q Consensus        32 VIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLyv~Y  110 (117)
                      |+|.-.+.+++|+|+++||+||+++||++|+.+||+||++++++||||||||++ |++|++||+||++|| +||||||+|
T Consensus         6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y   84 (91)
T 4gdk_A            6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY   84 (91)
T ss_dssp             EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred             EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence            555555568999999999999999999999999999999999999999999975 899999999999999 899999999


Q ss_pred             cCcccCC
Q 033514          111 SGENTFG  117 (117)
Q Consensus       111 s~~~~fG  117 (117)
                      |+++|||
T Consensus        85 s~~~afG   91 (91)
T 4gdk_A           85 CKSQAWG   91 (91)
T ss_dssp             ESSCCCC
T ss_pred             eCccccC
Confidence            9999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=3.5e-35  Score=198.61  Aligned_cols=85  Identities=19%  Similarity=0.414  Sum_probs=80.5

Q ss_pred             CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC-CCCCccchHHHHHhHcCCCCCe
Q 033514           27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDGF  105 (117)
Q Consensus        27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~-~~p~~~~~l~~lY~~~kd~DGf  105 (117)
                      |+||+|++++.  +++|.|+++||+||+++||++|+.+||+||+++   +||||||| .+|++|++||+||++||| |||
T Consensus        11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf   84 (96)
T 1wz3_A           11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK   84 (96)
T ss_dssp             -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred             CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence            78999999888  779999999999999999999999999999998   99999999 679999999999999999 999


Q ss_pred             EEEEecCcccCC
Q 033514          106 LYVTYSGENTFG  117 (117)
Q Consensus       106 Lyv~Ys~~~~fG  117 (117)
                      |||+||+++|||
T Consensus        85 Lyi~Ys~~~afG   96 (96)
T 1wz3_A           85 LVVNYACSMAWG   96 (96)
T ss_dssp             EEEEEESCSCC-
T ss_pred             EEEEEeCCcccC
Confidence            999999999999

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=100.00  E-value=9.6e-34  Score=189.93  Aligned_cols=85  Identities=14%  Similarity=0.377  Sum_probs=67.0

Q ss_pred             CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCe
Q 033514           27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGF  105 (117)
Q Consensus        27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGf  105 (117)
                      |.||-|-..  +.+++|+|+++||+||+++||++|+.+||+||++   ++|||||||++ |++|++||+||++|| +|||
T Consensus         6 ~~Kv~vrfk--~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~   79 (91)
T 3w1s_C            6 IQKIQIKFQ--PIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE   79 (91)
T ss_dssp             CCEEEEEEE--ECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred             CCeEEEEEE--ecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence            355555444  4489999999999999999999999999999999   69999999965 999999999999999 6999


Q ss_pred             EEEEecCcccCC
Q 033514          106 LYVTYSGENTFG  117 (117)
Q Consensus       106 Lyv~Ys~~~~fG  117 (117)
                      |||+||+++|||
T Consensus        80 Lyv~Ys~~~afG   91 (91)
T 3w1s_C           80 LIVSYCASVAFG   91 (91)
T ss_dssp             EEEEEEC---CC
T ss_pred             EEEEEeCccccC
Confidence            999999999999

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=96.16  E-value=0.0073  Score=47.29  Aligned_cols=98  Identities=17%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             ccHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEEecC---CCchHHHHHHHHHhhC-CCCCceEEEEEcCC
Q 033514           10 HEFEKRRAEAERIREKYPDRIPVIVEKAERS-DIPTIDKKKYLVPA---DLTVGQFVYVIRKRIK-LSAEKAIFIFVDNV   84 (117)
Q Consensus        10 ~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~-~~p~l~k~Kflvp~---~~tv~~~~~~lrk~L~-l~~~~slfl~Vn~~   84 (117)
                      +.|++=..-..++....+.+|||.|-..... ..+.++   -.++.   ..|++++..- +..+. +-+..+..+.+.+.
T Consensus       183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI  258 (297)
T 2dyo_A          183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI  258 (297)
T ss_dssp             TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred             hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence            4455544455566656678999998765332 122221   11121   2267665410 22222 22344468889998


Q ss_pred             CCCccchHHHHHhHcCCCCCeEEEEec
Q 033514           85 LPPTGAIMSTIYDEKKDEDGFLYVTYS  111 (117)
Q Consensus        85 ~p~~~~~l~~lY~~~kd~DGfLyv~Ys  111 (117)
                      -++.++.|..||++++-.||||||.-.
T Consensus       259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~  285 (297)
T 2dyo_A          259 EIPWHMLLYDLYSKLRSFDGFLYITLV  285 (297)
T ss_dssp             EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred             cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence            888999999999999999999999865

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=95.80  E-value=0.024  Score=43.97  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=57.1

Q ss_pred             ccHHHHHHHHHHHHhhCC-----CcccEEEEccCCCCCCCCccceEEe---cCCCchHHHHHHHHHhh-CCC-CCceEEE
Q 033514           10 HEFEKRRAEAERIREKYP-----DRIPVIVEKAERSDIPTIDKKKYLV---PADLTVGQFVYVIRKRI-KLS-AEKAIFI   79 (117)
Q Consensus        10 ~~~e~R~~e~~~i~~k~p-----~~ipVIve~~~~~~~p~l~k~Kflv---p~~~tv~~~~~~lrk~L-~l~-~~~slfl   79 (117)
                      |.|++=..-..++....+     .+|||.|-... ++-|.++..-=-+   ....|++++...+=-.+ .-+ ......+
T Consensus       160 ~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~v  238 (275)
T 4gdk_B          160 DRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQV  238 (275)
T ss_dssp             TCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEE
T ss_pred             CCHHHHHHHHHhhcCCCCccCccccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceE
Confidence            344433333344444333     67999996431 2222222100000   12357777655431111 101 1234567


Q ss_pred             EEcCCCCCccchHHHHHhHcCCCCCeEEEEecC
Q 033514           80 FVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG  112 (117)
Q Consensus        80 ~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~  112 (117)
                      ++.+.-++.++.|.+||+++.-.||||||.-.-
T Consensus       239 iihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~  271 (275)
T 4gdk_B          239 MIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP  271 (275)
T ss_dssp             EBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred             EEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence            778877999999999999999999999997653

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=95.57  E-value=0.0097  Score=46.11  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             CCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC
Q 033514           26 YPDRIPVIVEKAERSDIPTIDKKKYLVP---ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE  102 (117)
Q Consensus        26 ~p~~ipVIve~~~~~~~p~l~k~Kflvp---~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~  102 (117)
                      -...|||.|-... +  |.++   -+|+   ...|++++..   ..+..- .....+++.+.-++.++.|.+||+++.-.
T Consensus       196 ~~r~IPiRIy~~~-~--~~iQ---~~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~  265 (274)
T 3vqi_A          196 KAKSLPVRVWTSN-Y--AVLQ---PTVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI  265 (274)
T ss_dssp             GCSBCCEEEECTT-S--CEEC---CCCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred             cccceeEEEEcCC-C--CeEe---cccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence            4578999986532 2  2211   1233   3667777654   334211 12345777887789999999999999999


Q ss_pred             CCeEEEE
Q 033514          103 DGFLYVT  109 (117)
Q Consensus       103 DGfLyv~  109 (117)
                      ||||||.
T Consensus       266 DgFLhiv  272 (274)
T 3vqi_A          266 DGFLYLV  272 (274)
T ss_dssp             TSCEEEE
T ss_pred             CceEEEE
Confidence            9999986

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=93.84  E-value=0.088  Score=33.90  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=35.4

Q ss_pred             cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC
Q 033514           47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL   85 (117)
Q Consensus        47 k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~   85 (117)
                      .-+|.|+.+.+|.+++..-|++-+++++.++.|..++.-
T Consensus        21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdR   59 (82)
T 3goe_A           21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEW   59 (82)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEE
T ss_pred             CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcc
Confidence            448999999999999999999999999999999998743

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=85.68  E-value=1.8  Score=25.88  Aligned_cols=59  Identities=10%  Similarity=0.091  Sum_probs=42.4

Q ss_pred             ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEec
Q 033514           48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS  111 (117)
Q Consensus        48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Ys  111 (117)
                      ..+-|..+.||+++...+..+.++++++--++| ++.....+.+++++    .-+ +..|++...
T Consensus        16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~----~i~~~~~i~l~~~   75 (79)
T 2uyz_B           16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL----GMEEEDVIEVYQE   75 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHH----TCCTTEEEEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHc----CCCCCCEEEEEEe
Confidence            356799999999999999999999987655544 56555667788774    222 336666543

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=85.25  E-value=2.5  Score=25.96  Aligned_cols=47  Identities=15%  Similarity=0.198  Sum_probs=38.0

Q ss_pred             ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514           48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   95 (117)
Q Consensus        48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l   95 (117)
                      ..|.|..+.+++.++....++.++++++--|+| ++.-...+.|.+++
T Consensus        21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l   67 (79)
T 3a4r_A           21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL   67 (79)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            468999999999999999999999988666666 55444556778776

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.46  E-value=3  Score=26.65  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=44.0

Q ss_pred             EEecCCCchHHHHHHHHHhhCCCCCceEEEEEc---CC-CCCccchHHHHHhHcCCCCCeEEEE
Q 033514           50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV-LPPTGAIMSTIYDEKKDEDGFLYVT  109 (117)
Q Consensus        50 flvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn---~~-~p~~~~~l~~lY~~~kd~DGfLyv~  109 (117)
                      .-||.+.+++++...|+++|++.+++...-|=.   +. .+..|+.|...++.=+  +|-|-+.
T Consensus        18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL~   79 (83)
T 1oey_A           18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTLW   79 (83)
T ss_dssp             EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEEE
Confidence            358999999999999999999987665555554   22 3688889999998865  4455543

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=83.51  E-value=6.3  Score=26.05  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514           27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   95 (117)
Q Consensus        27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l   95 (117)
                      +++|-|.|.-.. +     ....|.|..+.+++.++....++.++++.+--|+| ++.-...+.|..++
T Consensus        24 ~~~I~IkVk~~~-g-----~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl   85 (110)
T 2k8h_A           24 TALVAVKVVNAD-G-----AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL   85 (110)
T ss_dssp             CCCEEEEEEETT-S-----CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred             CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            355666664321 2     23478999999999999999999999988666666 44444556788887

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=82.30  E-value=6.2  Score=23.80  Aligned_cols=74  Identities=9%  Similarity=0.064  Sum_probs=49.4

Q ss_pred             CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCe
Q 033514           27 PDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGF  105 (117)
Q Consensus        27 p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGf  105 (117)
                      |..+-|.|.... +     +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.    .-. +..
T Consensus         5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~   73 (87)
T 1wh3_A            5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDT   73 (87)
T ss_dssp             SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEE
T ss_pred             CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCE
Confidence            455667775432 1     1224568999999999999999999987754 344566655667788765    232 346


Q ss_pred             EEEEec
Q 033514          106 LYVTYS  111 (117)
Q Consensus       106 Lyv~Ys  111 (117)
                      |++...
T Consensus        74 i~l~~~   79 (87)
T 1wh3_A           74 LILSKK   79 (87)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            777654

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=82.08  E-value=3.2  Score=25.32  Aligned_cols=55  Identities=9%  Similarity=0.060  Sum_probs=40.3

Q ss_pred             ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514           52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS  111 (117)
Q Consensus        52 vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys  111 (117)
                      |+.+.||+++...|..+.++++++-- |+.++.....+.+|++.    .- ++..|+|...
T Consensus        26 v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~----~i~~g~~i~l~~~   81 (89)
T 1wy8_A           26 VSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY----DVGLNDIIQLLVR   81 (89)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH----TCCTTCEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC----CCCCCCEEEEEEe
Confidence            89999999999999999999877543 44466655667788765    22 2447777654

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=80.06  E-value=2  Score=25.78  Aligned_cols=58  Identities=10%  Similarity=0.085  Sum_probs=41.5

Q ss_pred             eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCC-CCCeEEEEec
Q 033514           49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS  111 (117)
Q Consensus        49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd-~DGfLyv~Ys  111 (117)
                      .+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++.    .- ++..|+|...
T Consensus        17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~----~i~~~~~l~l~~r   75 (85)
T 3mtn_B           17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKWSTLFLLLR   75 (85)
T ss_dssp             EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG----TCCTTCEEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEE
Confidence            4578999999999999999999987654 444577666666777653    22 3456776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	2e-60
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	5e-58
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	2e-52

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  179 bits (455), Expect = 2e-60
 Identities = 69/115 (60%), Positives = 88/115 (76%)

Query: 3   KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
           K  FK +H  E R  E+ +IR KYPDR+PVIVEK   S I  IDK+KYLVP+D+TV QF+
Sbjct: 2   KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61

Query: 63  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           ++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV YSGENTFG
Sbjct: 62  WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (438), Expect = 5e-58
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 3   KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
           K  +K EH FEKRR+E E+IR+KYPDR+PVIVEKA ++ I  +DKKKYLVP+DLTVGQF 
Sbjct: 4   KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 63

Query: 63  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
           ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED FLY+ YS E+ +G
Sbjct: 64  FLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (402), Expect = 2e-52
 Identities = 44/118 (37%), Positives = 77/118 (65%), Gaps = 2/118 (1%)

Query: 2   SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAER-SDIPTIDKKKYLVPADLTVGQ 60
           S+  FK    FE+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + +
Sbjct: 2   SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 61

Query: 61  FVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
            + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct: 62  LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	100.0
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	100.0
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.9
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	90.0
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	89.41
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	88.57
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	84.12
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	83.42
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	82.33

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-54  Score=302.30  Aligned_cols=117  Identities=61%  Similarity=1.023  Sum_probs=115.8

Q ss_pred             CCCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEE
Q 033514            1 MSKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIF   80 (117)
Q Consensus         1 ~~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~   80 (117)
                      ||+++||++||||+|++|+++|++|||+|||||||+++++++|+|+++|||||.++||+||+.+||+||+|++++|||||
T Consensus         2 ~m~~~fk~~~s~e~R~~es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflf   81 (118)
T d3d32a1           2 SMKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFF   81 (118)
T ss_dssp             CSCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEE
T ss_pred             CccchhcccCCHHHHHHHHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           81 VDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        81 Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      |||++|+++++||+||++|||+||||||+||+|+|||
T Consensus        82 vn~~~~~~~~ti~~lY~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          82 VNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             BTTBCCCTTCBHHHHHHHHCCTTSCEEEEEESCTTCC
T ss_pred             ECCcccCccccHHHHHHHhCCCCcEEEEEEecccccC
Confidence            9999999999999999999999999999999999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7e-54  Score=297.39  Aligned_cols=116  Identities=59%  Similarity=1.018  Sum_probs=114.8

Q ss_pred             CCccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514            2 SKSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   81 (117)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V   81 (117)
                      |+++||++||||+|++|+++|++|||+|||||||+++++++|.||+.|||||.++|+|||+.+||+||+|++++||||||
T Consensus         1 m~~~fk~~~sfe~R~~es~~i~~KyP~rIPVIve~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv   80 (116)
T d1eo6a_           1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV   80 (116)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred             CCccccccCCHHHHHHHHHHHHHHCCCCceEEEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           82 DNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        82 n~~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      ||++|+++++||+||++|||+||||||+|++|+|||
T Consensus        81 ~~~l~~~s~~i~~lY~~~KdeDGfLYi~Ys~entFG  116 (116)
T d1eo6a_          81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG  116 (116)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred             CCcccchhhhHHHHHHHcCCCCcEEEEEEeccccCC
Confidence            999999999999999999999999999999999999

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-51  Score=285.81  Aligned_cols=115  Identities=37%  Similarity=0.793  Sum_probs=110.9

Q ss_pred             CccccccccHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033514            3 KSNFKIEHEFEKRRAEAERIREKYPDRIPVIVEKAERS-DIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   81 (117)
Q Consensus         3 ~~~fk~~~~~e~R~~e~~~i~~k~p~~ipVIve~~~~~-~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~V   81 (117)
                      .++||++||||+|++|+++|++|||+|||||||+++++ ++|+|++.|||||.++||+||+.+||+||++++++||||||
T Consensus         3 ~~~fk~~~~fe~R~~es~~i~~KyP~riPVIve~~~~~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFlfv   82 (119)
T d2zjda1           3 EKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLV   82 (119)
T ss_dssp             CCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred             cCCccccCCHHHHHHHHHHHHHHCCCcceEEEEECCCCCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEEEE
Confidence            47899999999999999999999999999999999864 69999999999999999999999999999999999999999


Q ss_pred             cC-CCCCccchHHHHHhHcCCCCCeEEEEecCcccCC
Q 033514           82 DN-VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG  117 (117)
Q Consensus        82 n~-~~p~~~~~l~~lY~~~kd~DGfLyv~Ys~~~~fG  117 (117)
                      |+ .+|+++++||+||++|||+||||||+||+|+|||
T Consensus        83 n~~~~p~~~~~i~~lY~~~kdeDGfLYi~Ys~entFG  119 (119)
T d2zjda1          83 NGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG  119 (119)
T ss_dssp             TTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred             cCCccCCchhHHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            96 5699999999999999999999999999999998

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.6e-24  Score=141.04  Aligned_cols=82  Identities=18%  Similarity=0.433  Sum_probs=73.8

Q ss_pred             cccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhHcCCCCCeEE
Q 033514           29 RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLY  107 (117)
Q Consensus        29 ~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~-p~~~~~l~~lY~~~kd~DGfLy  107 (117)
                      ||-|...  +.+++|.|+++||.|.++.+++.++.+|||+|+   .+++|+|||+++ |++|+++|+||+||+ .||.|.
T Consensus         2 KV~v~fk--~iG~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~-~~gkLv   75 (84)
T d1wz3a1           2 KIVVHLR--ATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFG-FDGKLV   75 (84)
T ss_dssp             EEEEEEE--ECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHC-BTTBEE
T ss_pred             cEEEEEE--ecCCCcccccceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcC-CCCEEE
Confidence            3444444  448999999999999999999999999999997   569999999976 999999999999996 799999


Q ss_pred             EEecCcccC
Q 033514          108 VTYSGENTF  116 (117)
Q Consensus       108 v~Ys~~~~f  116 (117)
                      |+||.++||
T Consensus        76 v~Y~~t~Aw   84 (84)
T d1wz3a1          76 VNYACSMAW   84 (84)
T ss_dssp             EEEESCSCC
T ss_pred             EEEeccccC
Confidence            999999998

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.00  E-value=0.72  Score=26.61  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             ccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEE
Q 033514           30 IPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYV  108 (117)
Q Consensus        30 ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv  108 (117)
                      |-|+|+... +     +...+-|.++.||+++...|..+.++++++ .-|+.++.....+.+|++    |+-. +..|.|
T Consensus         2 i~i~vk~~~-G-----k~~~v~V~~~~tV~~lK~~I~~~~~i~~~~-q~Li~~Gk~L~d~~tL~~----y~I~~gstl~L   70 (73)
T d1m94a_           2 IEVVVNDRL-G-----KKVRVKCLAEDSVGDFKKVLSLQIGTQPNK-IVLQKGGSVLKDHISLED----YEVHDQTNLEL   70 (73)
T ss_dssp             EEEEEEETT-T-----EEEEEEECTTSBHHHHHHHHHHHHCCTTTS-EEEESSSCEECTTSBHHH----HTCCTTEEEEE
T ss_pred             eEEEEECCC-C-----CEEEEEECCcCcHHHHHHHHHHhhcccccE-EEEEEEeEEecccCcHHH----cCCCCCCEEEE
Confidence            456665542 1     233467999999999999999999999875 455567766677788887    3333 336777


Q ss_pred             Ee
Q 033514          109 TY  110 (117)
Q Consensus       109 ~Y  110 (117)
                      .|
T Consensus        71 ~~   72 (73)
T d1m94a_          71 YY   72 (73)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=89.41  E-value=0.12  Score=30.65  Aligned_cols=47  Identities=9%  Similarity=0.160  Sum_probs=36.5

Q ss_pred             ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514           48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   95 (117)
Q Consensus        48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l   95 (117)
                      ..|.|..+.+++.++..+.++.++++++--|+| |+.....+.|++++
T Consensus        16 ~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f-~G~~l~~~~T~~~~   62 (79)
T d1euvb_          16 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL   62 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE-CCEEeCCCCCHHHC
Confidence            468999999999999999999999988766665 66554555555543

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=0.69  Score=28.71  Aligned_cols=71  Identities=15%  Similarity=0.085  Sum_probs=49.1

Q ss_pred             CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCC-eE
Q 033514           28 DRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FL  106 (117)
Q Consensus        28 ~~ipVIve~~~~~~~p~l~k~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DG-fL  106 (117)
                      ..|.|+|.-.. +     ++..+-|..+.||++|...|..+.++++++- -|+.++.....+.+|++    |+-.|| .|
T Consensus        27 ~~i~V~V~~~~-G-----k~~~v~V~p~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~d----ygI~~GstI   95 (100)
T d1uh6a_          27 TMIEVVCNDRL-G-----KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD----YEIHDGMNL   95 (100)
T ss_dssp             CEEEEEEECSS-S-----SCEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH----HTCCTTEEE
T ss_pred             ceEEEEEECCC-C-----CEEEEEECCcChHHHHHHHHHHHHCCCcceE-EEEEEeecccCcCCHHH----cCCCCCCEE
Confidence            34667775542 2     2345679999999999999999999998765 44457777777778765    444555 44


Q ss_pred             EEE
Q 033514          107 YVT  109 (117)
Q Consensus       107 yv~  109 (117)
                      +|.
T Consensus        96 ~L~   98 (100)
T d1uh6a_          96 ELY   98 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=1  Score=26.06  Aligned_cols=47  Identities=9%  Similarity=0.096  Sum_probs=37.2

Q ss_pred             ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033514           48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   95 (117)
Q Consensus        48 ~Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~l   95 (117)
                      -.|.|..+.+++.++....++.++++++.-|+| |+.....+.|+.++
T Consensus        15 v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~f-dG~~l~~~~T~~~l   61 (77)
T d2uyzb1          15 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL   61 (77)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCCHHHc
Confidence            469999999999999999999999988766664 55443445677776

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=1.6  Score=25.79  Aligned_cols=57  Identities=11%  Similarity=0.091  Sum_probs=42.7

Q ss_pred             eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCC-CCeEEEEe
Q 033514           49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTY  110 (117)
Q Consensus        49 Kflvp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~-DGfLyv~Y  110 (117)
                      .+-|..+.||.++...|..+.++++++--.+| ++.....+.+|++ |   .-. +-.|+|.-
T Consensus        21 ~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~-y---~I~~~stl~l~~   78 (87)
T d1wh3a_          21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI-Y---GIQDSDTLILSK   78 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH-H---TCCTTEEEEEEE
T ss_pred             EEEECCcCcHHHHHHHHHHHHCcChHHeEEEe-eceEcCCCCcHHH-c---CCCCCCEEEEEe
Confidence            45689999999999999999999988765555 6666677888887 2   222 44666654

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=1.4  Score=25.60  Aligned_cols=55  Identities=7%  Similarity=0.065  Sum_probs=40.1

Q ss_pred             ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhHcCCCCCeEEEEe
Q 033514           52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY  110 (117)
Q Consensus        52 vp~~~tv~~~~~~lrk~L~l~~~~slfl~Vn~~~p~~~~~l~~lY~~~kd~DGfLyv~Y  110 (117)
                      |..+.||+++...|..+.++++++--.+| ++.....+.+|++.   -=.++..|++..
T Consensus        19 v~~~~TV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~y---~I~~~s~i~lv~   73 (76)
T d1wy8a1          19 VSRKATIEELRERVWALFDVRPECQRLFY-RGKQLENGYTLFDY---DVGLNDIIQLLV   73 (76)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEEEEE-TTEECCSSSBHHHH---TCCTTCEEEEEE
T ss_pred             cCCCChHHHHHHHHHHHHCCCchhcEEEE-EeeEecCCCCHHHc---CCCCCCEEEEEE
Confidence            89999999999999999999877655555 66555667788653   112355777654