Citrus Sinensis ID: 033515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQQY
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHccccEEEEccccHHHHHHccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcEccHHHHHHHcccccEEEEEEccccccccccEcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHccccEEEcccccccccHccc
Coil and Loop (DISEMBL)
marsisyisgsqllslkrrpniavidvrddersydghitgslhypsdsftDKIFDLIQEVRGPTCAKRLANYLDevkedtginsIFVLERgfkgweasgkpvcrctdvpckeenqqy
Flexible Loop (DISEMBL)
marsisyisgsqllslkrrpniavidvrddersyDGHITgslhypsdsfTDKIFDLIQEVRGPTCAKRLANYLdevkedtgiNSIFVLERGFkgweasgkpvcrctdvpckeenqqy
Low Complexity Region (SEG)
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQQY
Disordered region (IsUnstruct)
************LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP********
Disordered Region (DISOPRED)
***S*SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD**********
Disordered Region (DISEMBL)
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQQY
Disordered Region (DISPRO)
****ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q8GY31	146	Dual specificity phosphat	yes	no	0.948	0.760	0.674	2e-44
Q336V5	160	Arsenate reductase 2.1 OS	yes	no	0.948	0.693	0.511	3e-33
Q10SX6	130	Arsenate reductase 2.2 OS	no	no	0.948	0.853	0.515	5e-33
C4L7X3	106	Thiosulfate sulfurtransfe	yes	no	0.709	0.783	0.284	0.0003

>sp|Q8GY31|CDC25_ARATH Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana GN=CDC25 PE=1 SV=1

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 17  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 76

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 77  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 136

Query: 106 TDVPCK 111
            +VPCK
Sbjct: 137 AEVPCK 142

Arsenate reductase that plays a major role in the reduction of arsenate to arsenite and arsenic retention in roots.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 0EC: .EC: 4EC: .EC: -

>sp|Q336V5|ACR21_ORYSJ Arsenate reductase 2.1 OS=Oryza sativa subsp. japonica GN=ACR2.1 PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 87/127 (68%), Gaps = 16/127 (12%)

Query: 1   MARSISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--- 56
           MARS+SY+S ++LL++ R  P +A+IDVRD+ERSY  HI GS H+ S SF  ++ +L   
Sbjct: 24  MARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARA 83

Query: 57  ------------IQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 104
                       + +VRGP+CAK  ++YL E KE++G  +I VLERGF GWE SG+PVCR
Sbjct: 84  TGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCR 143

Query: 105 CTDVPCK 111
           CTD PCK
Sbjct: 144 CTDAPCK 150

Possesses phosphatase activity towards p-nitrophenyl phosphate in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: 0

EC: .

EC: 4

EC: .

EC: 1

>sp|Q10SX6|ACR22_ORYSJ Arsenate reductase 2.2 OS=Oryza sativa subsp. japonica GN=ACR2.2 PE=1 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MAR +SY+S +QL+ + R P IAV+DVRD+ER YD HI GS HY SDSF +++ +L Q  
Sbjct: 1   MARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQAT 60

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGP+CA+   +YL E  ED+ + +I VLERGF GWE SG+PVCRC
Sbjct: 61  KGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRC 120

Query: 106 TDVPCK 111
            D PCK
Sbjct: 121 KDAPCK 126

Possesses phosphatase activity towards p-nitrophenyl phosphate in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: 0

EC: .

EC: 4

EC: .

EC: 1

>sp|C4L7X3|GLPE_TOLAT Thiosulfate sulfurtransferase GlpE OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=glpE PE=3 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 12/95 (12%)

Query: 8  ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDS---FTDKIFD----LIQEV 60
          IS  Q  +L + P++ + D+RD       H+TG+ H  +D+   FT +I      L+   
Sbjct: 7  ISIQQAAALLQLPSVCLADIRDPSSFNAAHVTGAFHLTNDTLPQFTQQITKETPVLVMCY 66

Query: 61 RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 95
           G   ++ +ANYL  +    G   ++ ++ GF+GW
Sbjct: 67 HG-NSSQGVANYLTSI----GYEKVYSIDGGFEGW 96

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Tolumonas auensis (strain DSM 9187 / TA4) (taxid: 595494)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
224068805	130	predicted protein [Populus trichocarpa]	0.974	0.876	0.689	4e-46
255552529	131	Dual specificity phosphatase Cdc25, puta	0.991	0.885	0.664	1e-44
351722004	131	uncharacterized protein LOC100305790 [Gl	0.965	0.862	0.679	3e-44
449482402	129	PREDICTED: dual specificity phosphatase	0.957	0.868	0.669	6e-44
297806301	132	hypothetical protein ARALYDRAFT_487122 [	0.948	0.840	0.682	3e-43
225441181	130	PREDICTED: dual specificity phosphatase	0.982	0.884	0.664	3e-43
55669834	152	Chain A, Nmr Structure Of A Cdc25-Like D	0.948	0.730	0.674	6e-43
18414234	146	dual specificity phosphatase Cdc25 [Arab	0.948	0.760	0.674	7e-43
7378629	132	putative protein [Arabidopsis thaliana]	0.948	0.840	0.674	8e-43
21555118	130	unknown [Arabidopsis thaliana]	0.948	0.853	0.674	1e-42

>gi|224068805|ref|XP_002326204.1| predicted protein [Populus trichocarpa] gi|222833397|gb|EEE71874.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 104/129 (80%), Gaps = 15/129 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE- 59
           M+R ISYI+GSQLLSL+R PNIA+IDVRDDERSYDGHI GSLHY SD+FTD+I +LIQE 
Sbjct: 1   MSRGISYITGSQLLSLRRLPNIAIIDVRDDERSYDGHIAGSLHYASDTFTDRISNLIQEV 60

Query: 60  --------------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                         VRGPTCA+RLANYL+EVKED GI +I VLERGF GWEA+G+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPTCARRLANYLEEVKEDGGIKNIMVLERGFNGWEAAGRPVCRC 120

Query: 106 TDVPCKEEN 114
           T +PCK+E+
Sbjct: 121 TGIPCKDES 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552529|ref|XP_002517308.1| Dual specificity phosphatase Cdc25, putative [Ricinus communis] gi|223543571|gb|EEF45101.1| Dual specificity phosphatase Cdc25, putative [Ricinus communis]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/131 (66%), Positives = 101/131 (77%), Gaps = 15/131 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           M+RSISYI+GSQLL+LKRRPNIA+IDVRDDERS DGHI GSLHY SD+F+D+I DLIQ  
Sbjct: 1   MSRSISYITGSQLLTLKRRPNIAIIDVRDDERSNDGHIAGSLHYASDTFSDRISDLIQQV 60

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGP CA+R ANYL+E+KED GI  I VLERGF GWEA+G+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPRCARRFANYLEEMKEDAGIKDIMVLERGFNGWEAAGRPVCRC 120

Query: 106 TDVPCKEENQQ 116
           TD PCK  + Q
Sbjct: 121 TDNPCKAASDQ 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722004|ref|NP_001236717.1| uncharacterized protein LOC100305790 [Glycine max] gi|255626611|gb|ACU13650.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 102/128 (79%), Gaps = 15/128 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+GSQLLSL+R P+IAV+DVRDDERSYDG I+GSLHY SD+F+D I +LIQ  
Sbjct: 1   MARSISYITGSQLLSLRRHPSIAVVDVRDDERSYDGRISGSLHYASDTFSDNISNLIQAV 60

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYL+E KEDTGI +I VLERGF GWEASG+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPTCARRLVNYLEENKEDTGIKNIMVLERGFNGWEASGRPVCRC 120

Query: 106 TDVPCKEE 113
           T++PCK E
Sbjct: 121 TNIPCKGE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482402|ref|XP_004156271.1| PREDICTED: dual specificity phosphatase Cdc25-like isoform 2 [Cucumis sativus]

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 101/127 (79%), Gaps = 15/127 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE- 59
           M+RSISYI+G+QLLS KRRPN+A+IDVRDDERSYDGHI GSLH+ SDSF+DKI  L+QE 
Sbjct: 1   MSRSISYITGTQLLSFKRRPNVAIIDVRDDERSYDGHIAGSLHFASDSFSDKISKLVQEV 60

Query: 60  --------------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                         VRGP+CA++LANYL+ +KED GI +I VLERGF GWEASG+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPSCARKLANYLEGIKEDGGIKNICVLERGFNGWEASGQPVCRC 120

Query: 106 TDVPCKE 112
            +VPCKE
Sbjct: 121 NNVPCKE 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806301|ref|XP_002871034.1| hypothetical protein ARALYDRAFT_487122 [Arabidopsis lyrata subsp. lyrata] gi|297316871|gb|EFH47293.1| hypothetical protein ARALYDRAFT_487122 [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 96/126 (76%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 62

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 63  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 122

Query: 106 TDVPCK 111
            DVPCK
Sbjct: 123 ADVPCK 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441181|ref|XP_002269130.1| PREDICTED: dual specificity phosphatase Cdc25 [Vitis vinifera] gi|297739969|emb|CBI30151.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/131 (66%), Positives = 101/131 (77%), Gaps = 16/131 (12%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE- 59
           MARSISYI+GSQLL+LKRRPNIA++DVRDDERSYDGHI GSLHY SD+F+DKI +L+QE 
Sbjct: 1   MARSISYITGSQLLALKRRPNIAIVDVRDDERSYDGHIAGSLHYASDTFSDKISNLVQEV 60

Query: 60  --------------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                         VRGPTCA+RLA YL  V E+  I +I VLERGF GWEASG+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPTCARRLATYLTGV-ENEEIKNILVLERGFNGWEASGRPVCRC 119

Query: 106 TDVPCKEENQQ 116
           T +PCK +N Q
Sbjct: 120 TGIPCKGDNAQ 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55669834|pdb|1T3K|A Chain A, Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine Phosphatase Of Arabidopsis Thaliana

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 82

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 83  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 142

Query: 106 TDVPCK 111
            +VPCK
Sbjct: 143 AEVPCK 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414234|ref|NP_568119.1| dual specificity phosphatase Cdc25 [Arabidopsis thaliana] gi|62286622|sp|Q8GY31.1|CDC25_ARATH RecName: Full=Dual specificity phosphatase Cdc25; AltName: Full=Arath;CDC25; AltName: Full=Arsenate reductase 2; AltName: Full=Sulfurtransferase 5; Short=AtStr5 gi|26450859|dbj|BAC42537.1| unknown protein [Arabidopsis thaliana] gi|28372808|gb|AAO39886.1| At5g03455 [Arabidopsis thaliana] gi|332003224|gb|AED90607.1| dual specificity phosphatase Cdc25 [Arabidopsis thaliana]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 17  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 76

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 77  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 136

Query: 106 TDVPCK 111
            +VPCK
Sbjct: 137 AEVPCK 142

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7378629|emb|CAB83305.1| putative protein [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 62

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 63  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 122

Query: 106 TDVPCK 111
            +VPCK
Sbjct: 123 AEVPCK 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555118|gb|AAM63780.1| unknown [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 1   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 60

Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 61  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 120

Query: 106 TDVPCK 111
            +VPCK
Sbjct: 121 AEVPCK 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:505006579	146	CDC25 [Arabidopsis thaliana (t	0.948	0.760	0.674	2e-40
UNIPROTKB|Q10SX6	130	ACR2.2 "Arsenate reductase 2.2	0.948	0.853	0.515	3.8e-30
UNIPROTKB|Q336V5	160	ACR2.1 "Arsenate reductase 2.1	0.948	0.693	0.511	7.9e-30
UNIPROTKB|Q48C88	137	PSPPH_4915 "Rhodanese domain p	0.735	0.627	0.293	0.00045
UNIPROTKB|Q87UH1	137	PSPTO_5326 "Rhodanese-like dom	0.735	0.627	0.293	0.00057
UNIPROTKB|Q9KNS7	144	VC_2654 "Putative uncharacteri	0.829	0.673	0.245	0.00057
TIGR_CMR|VC_2654	144	VC_2654 "conserved hypothetica	0.829	0.673	0.245	0.00057
TIGR_CMR|SO_4672	101	SO_4672 "glpE protein" [Shewan	0.777	0.900	0.245	0.00093

TAIR|locus:505006579 CDC25 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 85/126 (67%), Positives = 96/126 (76%)

Query:     1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
             MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct:    17 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 76

Query:    59 -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                          +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct:    77 KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 136

Query:   106 TDVPCK 111
              +VPCK
Sbjct:   137 AEVPCK 142

GO:0005634 "nucleus" evidence=ISM

GO:0004725 "protein tyrosine phosphatase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0030611 "arsenate reductase activity" evidence=IGI

GO:0046685 "response to arsenic-containing substance" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q10SX6 ACR2.2 "Arsenate reductase 2.2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 65/126 (51%), Positives = 84/126 (66%)

Query:     1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
             MAR +SY+S +QL+ + R P IAV+DVRD+ER YD HI GS HY SDSF +++ +L Q  
Sbjct:     1 MARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQAT 60

Query:    59 -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                          +VRGP+CA+   +YL E  ED+ + +I VLERGF GWE SG+PVCRC
Sbjct:    61 KGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRC 120

Query:   106 TDVPCK 111
              D PCK
Sbjct:   121 KDAPCK 126

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=IDA

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

UNIPROTKB|Q336V5 ACR2.1 "Arsenate reductase 2.1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 65/127 (51%), Positives = 87/127 (68%)

Query:     1 MARSISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--- 56
             MARS+SY+S ++LL++ R  P +A+IDVRD+ERSY  HI GS H+ S SF  ++ +L   
Sbjct:    24 MARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARA 83

Query:    57 ------------IQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 104
                         + +VRGP+CAK  ++YL E KE++G  +I VLERGF GWE SG+PVCR
Sbjct:    84 TGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCR 143

Query:   105 CTDVPCK 111
             CTD PCK
Sbjct:   144 CTDAPCK 150

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=IDA

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

UNIPROTKB|Q48C88 PSPPH_4915 "Rhodanese domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 27/92 (29%), Positives = 44/92 (47%)

Query:     8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAK 67
             +S  +L +L       VIDVR  +    GHI GSL++P D    +  +L Q+ +  T   
Sbjct:    38 LSTRELTALVNSDQGVVIDVRSKKDFTAGHIVGSLNFPQDKVLTRTAEL-QKYKDKTLI- 95

Query:    68 RLANYLDEVKEDTGINSIFVLERGFKGWEASG 99
                  +D + +  G  +  +L+ GFK  + SG
Sbjct:    96 ----IVDAMGQHAGTTARELLKSGFKAAKLSG 123

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87UH1 PSPTO_5326 "Rhodanese-like domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 27/92 (29%), Positives = 44/92 (47%)

Query:     8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAK 67
             +S  +L +L       VIDVR  +    GHI GSL++P D    +  +L Q+ +  T   
Sbjct:    38 LSTRELTALVNSDQGVVIDVRSKKDFTAGHIVGSLNFPQDKVLTRTAEL-QKYKDKTLI- 95

Query:    68 RLANYLDEVKEDTGINSIFVLERGFKGWEASG 99
                  +D + +  G  +  +L+ GFK  + SG
Sbjct:    96 ----IVDAMGQHAGSTARELLKTGFKAAKLSG 123

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KNS7 VC_2654 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 25/102 (24%), Positives = 42/102 (41%)

Query:     8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHY-PSDSFTDKIFDLIQEVRGP--- 63
             ++ +Q   L  R N  V+D+R  +    GHIT ++H  PSD     +  L      P   
Sbjct:    40 VTATQATLLINRENGIVVDIRSKDEFKQGHITDAIHILPSDIKAGNLAGLESHKSNPIIV 99

Query:    64 TCAK-RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 104
              C   + A    ++    G   + +L+ G   W  +  P+ R
Sbjct:   100 VCKTGQTARESADLLTKAGFEKVNLLKNGLIAWNEANLPLVR 141

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_2654 VC_2654 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 25/102 (24%), Positives = 42/102 (41%)

Query:     8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHY-PSDSFTDKIFDLIQEVRGP--- 63
             ++ +Q   L  R N  V+D+R  +    GHIT ++H  PSD     +  L      P   
Sbjct:    40 VTATQATLLINRENGIVVDIRSKDEFKQGHITDAIHILPSDIKAGNLAGLESHKSNPIIV 99

Query:    64 TCAK-RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 104
              C   + A    ++    G   + +L+ G   W  +  P+ R
Sbjct:   100 VCKTGQTARESADLLTKAGFEKVNLLKNGLIAWNEANLPLVR 141

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4672 SO_4672 "glpE protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 25/102 (24%), Positives = 49/102 (48%)

Query:     4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FD--LI 57
             S  ++S +QL+ +    ++ ++D+RD     +GHI G+ +  +++    I     D  L+
Sbjct:     3 SFKHLSVNQLVQMTEAKSVQIVDIRDGNSFNNGHIDGAFNLNNENLAHFIGQADMDRPLV 62

Query:    58 QEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW-EAS 98
                     ++  A YL E     G + ++ L+ GF  W EA+
Sbjct:    63 VVCYHGISSQNAAQYLCE----QGFDDVYSLDGGFSAWHEAN 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  11 22  0.36    31
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  129 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.31u 0.07s 11.38t   Elapsed:  00:00:02
  Total cpu time:  11.31u 0.07s 11.38t   Elapsed:  00:00:02
  Start:  Thu May  9 16:34:14 2013   End:  Thu May  9 16:34:16 2013

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY31	CDC25_ARATH	1, ., 2, 0, ., 4, ., -	0.6746	0.9487	0.7602	yes	no
Q336V5	ACR21_ORYSJ	1, ., 2, 0, ., 4, ., 1	0.5118	0.9487	0.6937	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.28.772.1	hypothetical protein (130 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_V1631	hypothetical protein (799 aa)					•				0.407

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
cd01531	113	cd01531, Acr2p, Eukaryotic arsenate resistance pro	1e-29
cd01443	113	cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of	7e-12
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	1e-08
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	8e-06
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	2e-05
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	7e-05
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	0.004
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	0.004

>gnl|CDD|238789 cd01531, Acr2p, Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

 Score =  102 bits (256), Expect = 1e-29
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 22/115 (19%)

Query: 5   ISYISGSQLLSLKR--RPNIAVIDVRDDERSYDG-HITGSLHYPSDSFTDKIFDLIQ--- 58
           +SYIS +QL    R  RP   V+DVRD+   Y G HI GS HYPS  F  ++  L+Q   
Sbjct: 1   VSYISPAQLKGWIRNGRPPFQVVDVRDE--DYAGGHIKGSWHYPSTRFKAQLNQLVQLLS 58

Query: 59  --------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 99
                         +VRGP+ A++   YLDE   +T    ++VL  GF  WE+S 
Sbjct: 59  GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESSY 113

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs. Length = 113

>gnl|CDD|238720 cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

 Score = 57.0 bits (138), Expect = 7e-12
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 26/114 (22%)

Query: 6   SYISGSQLLSL------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE 59
            YIS  +L++L          +  V+D+R D+    GHI GS++ P+ S    +  +   
Sbjct: 2   KYISPEELVALLENSDSNAGKDFVVVDLRRDDYE-GGHIKGSINLPAQSCYQTLPQVYAL 60

Query: 60  V-----------------RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 96
                             RGP  A+  A+YL +V E       ++L  G K W 
Sbjct: 61  FSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESL--PKSYILTGGIKAWY 112

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR). Length = 113

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 16/102 (15%)

Query: 12  QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT-DKIFDLIQEV---------- 60
           +L +L    ++ +IDVR  E    GHI G+++ P    + DK+   ++E+          
Sbjct: 4   ELKALLEADDVVLIDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESELEELGKKLDKDKTI 63

Query: 61  -----RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 97
                 G    +  A  L  + +  G  +++VL+ GF+ W+A
Sbjct: 64  VVYCASGNRSGQAAALLLALILKALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI----QEV------- 60
          +L  L    +  ++DVR+ E    GHI G+++ P     ++   L     + +       
Sbjct: 1  ELKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERAALLELDKDKPIVVYCRSG 60

Query: 61 -RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 96
           R    AK L           G  +++ LE G   W+
Sbjct: 61 NRSARAAKLLRKA--------GGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 12  QLLSLKRRPNIAVIDVRD-DERSYDGHITGSLHYPSDSFT--------DKIFDLIQEVRG 62
           +   L    +  ++DVR+ +E         +++ P                  ++     
Sbjct: 11  EAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLELPDDDPIVVYCAS 70

Query: 63  PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
              +   A  L    +  G  +++ L+ G   W+ +G P+
Sbjct: 71  GVRSAAAAAAL----KLAGFTNVYNLDGGIDAWKGAGLPL 106

Length = 110

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 26/104 (25%)

Query: 19  RPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDK--------IFDLIQEV--------- 60
              + ++DVR  E  Y+ GHI G+++ P     D+          +L++ +         
Sbjct: 2   DEKVVLLDVRSPEE-YEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVV 60

Query: 61  ---RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 101
              R    + + A  L E+    G  ++++L+ G+K W A+G P
Sbjct: 61  VYCRSGNRSAKAAWLLREL----GFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 21/100 (21%)

Query: 16  LKRRPNIAVIDVRD-DERSYDGHITGSLHY----------PSDSFTDKIFDLIQEVRGPT 64
           L   P + ++DVRD  E    G I G+ H           P   +    F          
Sbjct: 9   LLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFA-----EDKP 63

Query: 65  ----CAKRLANYL-DEVKEDTGINSIFVLERGFKGWEASG 99
               CA    + L  +  +D G+  ++ +E GFK W+ +G
Sbjct: 64  FVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 22/96 (22%)

Query: 17  KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT-------DKIFDLIQEVRGPTC---- 65
             +P+  ++DVR  E    GH+ G+++ P            DK    +    GP C    
Sbjct: 21  NGKPDFVLVDVRSAEAYARGHVPGAINLPHREICENATAKLDKEKLFVVYCDGPGCNGAT 80

Query: 66  --AKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 99
             A +LA     VKE         +  G   W+  G
Sbjct: 81  KAALKLAELGFPVKE---------MIGGLDWWKREG 107

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.87
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.86
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.85
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.84
PLN02160	136	thiosulfate sulfurtransferase	99.82
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.81
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.81
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.81
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.8
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.8
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.79
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.79
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.79
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.79
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.78
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.78
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.78
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.78
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.77
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.77
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.76
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.76
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.76
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.76
PRK01415	247	hypothetical protein; Validated	99.74
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.73
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.73
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.73
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.72
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.72
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.72
PRK05320	257	rhodanese superfamily protein; Provisional	99.71
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.71
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.71
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.71
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.69
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.68
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.66
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.65
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.64
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.63
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.62
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.61
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.6
PRK07411	390	hypothetical protein; Validated	99.6
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.59
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.56
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.55
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.53
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.52
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.5
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.49
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.46
COG1054	308	Predicted sulfurtransferase [General function pred	99.36
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.31
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.23
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.06
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.02
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.59
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.52
KOG3636	669	consensus Uncharacterized conserved protein, conta	96.91
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	96.8
KOG1717	343	consensus Dual specificity phosphatase [Defense me	96.72
KOG1093	725	consensus Predicted protein kinase (contains TBC a	95.96
COG2603	334	Predicted ATPase [General function prediction only	95.45
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	89.28

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.87  E-value=6.1e-22  Score=120.57  Aligned_cols=97  Identities=20%  Similarity=0.364  Sum_probs=81.2

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      .++.++++++.++++..+.+|||||++.||..+|||||+|+|...+..++..+...      | .|.+ +..++..|+. 
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~~~~~~~ivv~c~~g~~-s~~a~~~L~~-   80 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQADFDTPVMVMCYHGNS-SQGAAQYLLQ-   80 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHhcCCCCCEEEEeCCCCC-HHHHHHHHHH-
Confidence            46789999999998766789999999999999999999999998887777666544      4 4555 5566666666 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                         .||++|++|.||+.+|...+.|++..
T Consensus        81 ---~G~~~v~~l~GG~~~w~~~~~~~~~~  106 (108)
T PRK00162         81 ---QGFDVVYSIDGGFEAWRRTFPAEVAS  106 (108)
T ss_pred             ---CCchheEEecCCHHHHHhcCCCccCC
Confidence               99999999999999999999987753

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.86  E-value=1.1e-21  Score=119.63  Aligned_cols=91  Identities=22%  Similarity=0.343  Sum_probs=75.4

Q ss_pred             CCcccCHHHHHhhhcCC-CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------c-cChhhhHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------V-RGPTCAKRLANYL   73 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~-~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~-~g~~~a~~~~~~l   73 (117)
                      .++.++++++.++++.. +.+|||||++.||..||||||+|||...+.....++...        | .|.+ +..++..|
T Consensus         8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~~~~~~ivv~C~~G~r-s~~a~~~L   86 (109)
T cd01533           8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVNCAGRTR-SIIGAQSL   86 (109)
T ss_pred             cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCCCCCCeEEEECCCCch-HHHHHHHH
Confidence            67899999999988744 578999999999999999999999998887777666322        4 5666 55567777


Q ss_pred             HHHHHhCCCce-EEEccccHHHHHhCC
Q 033515           74 DEVKEDTGINS-IFVLERGFKGWEASG   99 (117)
Q Consensus        74 ~~~l~~~G~~~-v~~l~gG~~~W~~~g   99 (117)
                      ..    .||++ |++|+||+.+|..+|
T Consensus        87 ~~----~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          87 IN----AGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             HH----CCCCcceeEecCCHHHHHhcC
Confidence            66    99987 999999999998765

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=3.4e-21  Score=115.91  Aligned_cols=86  Identities=23%  Similarity=0.470  Sum_probs=69.2

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH---HHHH---hhh------c-cChhhhHHHHHH
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---IFDL---IQE------V-RGPTCAKRLANY   72 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~~~~---~~~------~-~g~~~a~~~~~~   72 (117)
                      ..|+++++.++++.++++|||||++.||..||||||+|||...+...   +..+   .++      | +|.+ +..++..
T Consensus         2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~r-s~~a~~~   80 (101)
T cd01518           2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIR-CEKASAY   80 (101)
T ss_pred             CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchh-HHHHHHH
Confidence            46899999999887788999999999999999999999999876542   2221   222      4 5777 5556666


Q ss_pred             HHHHHHhCCCceEEEccccHHHHH
Q 033515           73 LDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        73 l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                      |..    +||++|+.|+||+.+|.
T Consensus        81 L~~----~G~~~v~~l~GG~~~W~  100 (101)
T cd01518          81 LKE----RGFKNVYQLKGGILKYL  100 (101)
T ss_pred             HHH----hCCcceeeechhHHHHh
Confidence            666    99999999999999996

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=3.4e-21  Score=115.44  Aligned_cols=92  Identities=23%  Similarity=0.413  Sum_probs=74.4

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEVK   77 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~l   77 (117)
                      +..|+++|+.++++.+ .+|||+|++++|..+|||||+|+|...+......+++.      | .|.+ +..++..|.+  
T Consensus         1 ~~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~~~~~~~~iv~~c~~g~~-s~~~~~~L~~--   76 (99)
T cd01527           1 LTTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEGLPLVGANAIIFHCRSGMR-TQQNAERLAA--   76 (99)
T ss_pred             CCccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccccCCCCCCcEEEEeCCCch-HHHHHHHHHH--
Confidence            3578999999988754 88999999999999999999999998776543334433      4 4555 6666777777  


Q ss_pred             HhCCCceEEEccccHHHHHhCCCCc
Q 033515           78 EDTGINSIFVLERGFKGWEASGKPV  102 (117)
Q Consensus        78 ~~~G~~~v~~l~gG~~~W~~~g~~~  102 (117)
                        .||++|++|.||+.+|...|+|+
T Consensus        77 --~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          77 --ISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             --cCCccEEEeeCCHHHHHHCcCCC
Confidence              99999999999999999988764

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>PLN02160 thiosulfate sulfurtransferase

Probab=99.82  E-value=6e-20  Score=116.12  Aligned_cols=100  Identities=17%  Similarity=0.280  Sum_probs=78.1

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCccccc--ccCCcc------chh-----HHHHH-Hhhh-------ccC
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGS--LHYPSD------SFT-----DKIFD-LIQE-------VRG   62 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga--~~ip~~------~l~-----~~~~~-~~~~-------~~g   62 (117)
                      .+..++++++.++++. +..|||||++.||..||||||  +|+|..      .+.     ..... +.+.       .+|
T Consensus        13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG   91 (136)
T PLN02160         13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG   91 (136)
T ss_pred             eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCc
Confidence            4788999999999874 468999999999999999999  899963      221     11112 1222       467


Q ss_pred             hhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515           63 PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  109 (117)
Q Consensus        63 ~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~  109 (117)
                      .+ |..++..|.+    .||++|+.|.||+.+|..+|+|+.+....|
T Consensus        92 ~R-S~~Aa~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~  133 (136)
T PLN02160         92 AR-SLKATTELVA----AGYKKVRNKGGGYLAWVDHSFPINQEEEEP  133 (136)
T ss_pred             HH-HHHHHHHHHH----cCCCCeeecCCcHHHHhhCCCCccccccCC
Confidence            77 6677777777    999999999999999999999999876554

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.81  E-value=4.1e-20  Score=110.10  Aligned_cols=83  Identities=24%  Similarity=0.354  Sum_probs=66.1

Q ss_pred             cCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh--h-------ccChhhhHHHHHHHHHH
Q 033515            8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--E-------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         8 is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~--~-------~~g~~~a~~~~~~l~~~   76 (117)
                      |+++++.+++...  ++++||||++.||..||||||+|+|...+......+..  .       ..|.+ +..++..|.. 
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~~~~~~iv~~c~~G~r-s~~aa~~L~~-   78 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAPVRGARIVLADDDGVR-ADMTASWLAQ-   78 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcccCCCeEEEECCCCCh-HHHHHHHHHH-
Confidence            6889999988743  57899999999999999999999998877655444422  1       45666 5556666666 


Q ss_pred             HHhCCCceEEEccccHHHHH
Q 033515           77 KEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~   96 (117)
                         +||+ |++|+||+.+|.
T Consensus        79 ---~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          79 ---MGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             ---cCCE-EEEecCcHHHhc
Confidence               9998 999999999995

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=5.6e-20  Score=114.20  Aligned_cols=93  Identities=17%  Similarity=0.271  Sum_probs=75.2

Q ss_pred             CCcccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh----------h------c-cChhh
Q 033515            4 SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ----------E------V-RGPTC   65 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~----------~------~-~g~~~   65 (117)
                      .+..|+++++.+++++ .+++|||||++.||..+|||||+|||...+..+...+..          +      | .|.+ 
T Consensus         6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r-   84 (122)
T cd01526           6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGND-   84 (122)
T ss_pred             cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCCc-
Confidence            4678999999998875 578899999999999999999999999887765544422          1      4 5666 


Q ss_pred             hHHHHHHHHHHHHhCCC-ceEEEccccHHHHHhCCCC
Q 033515           66 AKRLANYLDEVKEDTGI-NSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        66 a~~~~~~l~~~l~~~G~-~~v~~l~gG~~~W~~~g~~  101 (117)
                      +..++..|..    .|| ++|++|+||+.+|..+..+
T Consensus        85 s~~aa~~L~~----~G~~~~v~~l~GG~~~W~~~~~~  117 (122)
T cd01526          85 SQTAVRKLKE----LGLERFVRDIIGGLKAWADKVDP  117 (122)
T ss_pred             HHHHHHHHHH----cCCccceeeecchHHHHHHHhCc
Confidence            6667777777    999 6899999999999876543

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.81  E-value=8.6e-20  Score=116.55  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=70.8

Q ss_pred             HHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------cc-ChhhhHHHHHHHHHHHHhCCCce
Q 033515           13 LLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------VR-GPTCAKRLANYLDEVKEDTGINS   84 (117)
Q Consensus        13 ~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~~-g~~~a~~~~~~l~~~l~~~G~~~   84 (117)
                      +.+++. +.+++|||||++.+|..+|||||+|+|...|...+..+...      |. |.. |..++..|..    .||++
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l~~~~~vVv~c~~g~~-a~~aa~~L~~----~G~~~   76 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKLPAAERYVLTCGSSLL-ARFAAADLAA----LTVKP   76 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhcCCCCCEEEEeCCChH-HHHHHHHHHH----cCCcC
Confidence            344554 33589999999999999999999999998888777666543      43 433 5555666666    99999


Q ss_pred             EEEccccHHHHHhCCCCccccC
Q 033515           85 IFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        85 v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                      |++|+||+.+|...|+|+++..
T Consensus        77 v~~L~GG~~aW~~~g~pl~~~~   98 (145)
T cd01535          77 VFVLEGGTAAWIAAGLPVESGE   98 (145)
T ss_pred             eEEecCcHHHHHHCCCCcccCC
Confidence            9999999999999999998763

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=1.7e-19  Score=107.31  Aligned_cols=85  Identities=32%  Similarity=0.498  Sum_probs=71.1

Q ss_pred             ccCHHHHHhhhcC-CCeEEEecCCCCcccC--CcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            7 YISGSQLLSLKRR-PNIAVIDVRDDERSYD--GHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         7 ~is~~e~~~~~~~-~~~~iiDvR~~~e~~~--ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      .|++.++.+++++ .+.+|||+|++.+|..  +|||||+|+|...+......+++.      | .|.+ +..++..|.. 
T Consensus         1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~a~~~l~~-   78 (96)
T cd01444           1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDLDRDRPVVVYCYHGNS-SAQLAQALRE-   78 (96)
T ss_pred             CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhcCCCCCEEEEeCCCCh-HHHHHHHHHH-
Confidence            4789999998875 5689999999999999  999999999999888777666544      4 4555 6667777777 


Q ss_pred             HHhCCCceEEEccccHHHHH
Q 033515           77 KEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~   96 (117)
                         .||++|++|+||+.+|.
T Consensus        79 ---~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          79 ---AGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             ---cCCceEEEcCCCHHHhc
Confidence               99999999999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=1.4e-19  Score=108.66  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             cCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHH--------HHHHhhh------c-cChhhhHHHHH
Q 033515            8 ISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--------IFDLIQE------V-RGPTCAKRLAN   71 (117)
Q Consensus         8 is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~--------~~~~~~~------~-~g~~~a~~~~~   71 (117)
                      |+++|+.++++. .+++|||||++.||..||||||+|+|...+...        ...+++.      | .|.+ +..++.
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r-s~~aa~   79 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGS-SQFVAE   79 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCc-HHHHHH
Confidence            688999998874 468899999999999999999999999876432        2333333      4 4666 667777


Q ss_pred             HHHHHHHhCCCceEEEccccHHHHH
Q 033515           72 YLDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        72 ~l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                      .|.+    .||+ ++.|.||+.+|.
T Consensus        80 ~L~~----~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          80 LLAE----RGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHH----cCce-eEEeCCcHHhhc
Confidence            7777    9998 999999999995

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.79  E-value=2.7e-19  Score=107.62  Aligned_cols=86  Identities=23%  Similarity=0.413  Sum_probs=70.7

Q ss_pred             ccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh---h------c-cChhhhHHHHHHHH
Q 033515            7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ---E------V-RGPTCAKRLANYLD   74 (117)
Q Consensus         7 ~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~---~------~-~g~~~a~~~~~~l~   74 (117)
                      .|+++++.++++.+  +.+|||+|++.||..+|||||+|+|...+......+..   .      | .|.+ |..++..|.
T Consensus         1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~~~~~~~vv~~c~~g~r-s~~~~~~l~   79 (101)
T cd01528           1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDSDNPDKDIVVLCHHGGR-SMQVAQWLL   79 (101)
T ss_pred             CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcccCCCCeEEEEeCCCch-HHHHHHHHH
Confidence            37899999988753  57899999999999999999999999888776666653   2      3 5666 556677776


Q ss_pred             HHHHhCCCceEEEccccHHHHHh
Q 033515           75 EVKEDTGINSIFVLERGFKGWEA   97 (117)
Q Consensus        75 ~~l~~~G~~~v~~l~gG~~~W~~   97 (117)
                      +    .||++|++|+||+.+|..
T Consensus        80 ~----~G~~~v~~l~GG~~~w~~   98 (101)
T cd01528          80 R----QGFENVYNLQGGIDAWSL   98 (101)
T ss_pred             H----cCCccEEEecCCHHHHhh
Confidence            6    999999999999999965

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.7e-19  Score=110.94  Aligned_cols=95  Identities=21%  Similarity=0.355  Sum_probs=76.6

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH----HHHHhhh----------------ccCh
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK----IFDLIQE----------------VRGP   63 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~----~~~~~~~----------------~~g~   63 (117)
                      .+..++.++++++++.++.++||||.++||..||||.++|||+......    -++|.+.                .+|.
T Consensus        21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~  100 (136)
T KOG1530|consen   21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV  100 (136)
T ss_pred             CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence            5677889999999998789999999999999999999999999543321    1222221                5677


Q ss_pred             hhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515           64 TCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        64 ~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~  103 (117)
                      | +-.+...|..    .||+||..+.||+.+|.+.+++..
T Consensus       101 R-s~~A~~~l~s----~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen  101 R-SLKATKILVS----AGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             c-hhHHHHHHHH----cCcccccccCccHHHHHHccCCCC
Confidence            7 7677777777    999999999999999999887753

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=2.7e-19  Score=108.08  Aligned_cols=84  Identities=24%  Similarity=0.371  Sum_probs=64.0

Q ss_pred             cCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH---HH------HHHhh--h------c-cChhhhH
Q 033515            8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD---KI------FDLIQ--E------V-RGPTCAK   67 (117)
Q Consensus         8 is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~---~~------~~~~~--~------~-~g~~~a~   67 (117)
                      ||+++++++++.+  +++|||||++.||..||||||+|+|...+..   ..      ..+..  .      | .|.+ +.
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~~g~~-s~   79 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSHSHKH-AA   79 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeCCCcc-HH
Confidence            6899999998743  6899999999999999999999999875421   11      11111  1      3 4555 55


Q ss_pred             HHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515           68 RLANYLDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        68 ~~~~~l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                      .++..|..    +||++|++|+||+.+|+
T Consensus        80 ~~a~~L~~----~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          80 LFAAFLVK----CGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHH----cCCCCEEEEeCcHHHhc
Confidence            56666666    99999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=3.3e-19  Score=105.17  Aligned_cols=82  Identities=24%  Similarity=0.455  Sum_probs=66.8

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHHHHhC
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEVKEDT   80 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~l~~~   80 (117)
                      ++++++.++++ ++.++||+|++++|..||||||+|+|...+..+...+...      | .|.+ +..++..|++    .
T Consensus         1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~~~~~~~vvl~c~~g~~-a~~~a~~L~~----~   74 (90)
T cd01524           1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNELPKDKEIIVYCAVGLR-GYIAARILTQ----N   74 (90)
T ss_pred             CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHhcCCCCcEEEEcCCChh-HHHHHHHHHH----C
Confidence            47899999885 5778999999999999999999999998887766655443      3 4444 5556666666    9


Q ss_pred             CCceEEEccccHHHHH
Q 033515           81 GINSIFVLERGFKGWE   96 (117)
Q Consensus        81 G~~~v~~l~gG~~~W~   96 (117)
                      || +|++|+||+.+|+
T Consensus        75 G~-~v~~l~GG~~~w~   89 (90)
T cd01524          75 GF-KVKNLDGGYKTYS   89 (90)
T ss_pred             CC-CEEEecCCHHHhc
Confidence            99 8999999999995

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=5.2e-19  Score=107.99  Aligned_cols=92  Identities=23%  Similarity=0.381  Sum_probs=71.5

Q ss_pred             cccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhH-HHHHHhhh------ccCh--hhhHHHHHHHH
Q 033515            6 SYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQE------VRGP--TCAKRLANYLD   74 (117)
Q Consensus         6 ~~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-~~~~~~~~------~~g~--~~a~~~~~~l~   74 (117)
                      ..++++++.++++.  .+.+|||||++.+|..||||||+|+|...+.. ....+.+.      |.+.  ..+..++..|+
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~   87 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICENATAKLDKEKLFVVYCDGPGCNGATKAALKLA   87 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhHhhhcCCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            57899999998874  35899999999999999999999999988763 23333333      4432  12556666666


Q ss_pred             HHHHhCCCceEEEccccHHHHHhCCCCc
Q 033515           75 EVKEDTGINSIFVLERGFKGWEASGKPV  102 (117)
Q Consensus        75 ~~l~~~G~~~v~~l~gG~~~W~~~g~~~  102 (117)
                      .    +||+ |++|+||+.+|...|+|+
T Consensus        88 ~----~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          88 E----LGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             H----cCCe-EEEecCCHHHHHHCCCCC
Confidence            6    9995 999999999999998874

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.78  E-value=3e-19  Score=107.40  Aligned_cols=87  Identities=24%  Similarity=0.464  Sum_probs=67.2

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcc-cCCcccccccCCccchhHHHHH--------Hhhh------c-cChhhhHHHHH
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFD--------LIQE------V-RGPTCAKRLAN   71 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~-~~ghIpga~~ip~~~l~~~~~~--------~~~~------~-~g~~~a~~~~~   71 (117)
                      |+++++.+++++++.+|||+|++.+| ..||||||+|+|...+..+...        +.+.      | .|.+ +..++.
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~~~~   79 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWR-SALAGK   79 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCc-HHHHHH
Confidence            68899999888667899999999998 5799999999998776543221        2222      4 4555 556666


Q ss_pred             HHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515           72 YLDEVKEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        72 ~l~~~l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                      .|..    +||++|++|+||+.+|..+|
T Consensus        80 ~l~~----~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          80 TLQD----MGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHH----cChHHhEeecCcHHHHhhcC
Confidence            6666    99999999999999997654

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.78  E-value=1.7e-18  Score=112.36  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=69.6

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCC----cccC---------CcccccccCCc---cchh--------HHHHHH---
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDE----RSYD---------GHITGSLHYPS---DSFT--------DKIFDL---   56 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~----e~~~---------ghIpga~~ip~---~~l~--------~~~~~~---   56 (117)
                      ....|+++|+.+++++++.+|||||+..    +|..         +|||||+|+|.   ..+.        ..+..+   
T Consensus        34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~  113 (162)
T TIGR03865        34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG  113 (162)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence            5788999999999987778999999875    4544         49999999984   2222        112111   


Q ss_pred             hhh------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCc
Q 033515           57 IQE------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV  102 (117)
Q Consensus        57 ~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~  102 (117)
                      .++      | +|...+..++..|.+    +||++|++|+||+.+|..+|+|+
T Consensus       114 ~~d~~IVvYC~~G~~~S~~aa~~L~~----~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       114 DKDRPLVFYCLADCWMSWNAAKRALA----YGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHh----cCCcceEEecCCHHHHHHcCCCC
Confidence            112      4 344335566666666    99999999999999999999885

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=6.1e-19  Score=109.51  Aligned_cols=90  Identities=22%  Similarity=0.323  Sum_probs=68.3

Q ss_pred             cccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCcc-chhHHHHH------Hhhh------c--cChh
Q 033515            6 SYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFD------LIQE------V--RGPT   64 (117)
Q Consensus         6 ~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~-~l~~~~~~------~~~~------~--~g~~   64 (117)
                      ..|+++++.+++++      ++++|||||++.||..||||||+|||.. .+......      +.++      |  +|.+
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~r   81 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKR   81 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCcccc
Confidence            57999999999874      3689999999999999999999999986 46554332      2222      4  5666


Q ss_pred             hhHHHHHHHHHHHH--------hCCCceEEEccccHHHHH
Q 033515           65 CAKRLANYLDEVKE--------DTGINSIFVLERGFKGWE   96 (117)
Q Consensus        65 ~a~~~~~~l~~~l~--------~~G~~~v~~l~gG~~~W~   96 (117)
                       +..++..|+...+        .+||++|++|+||+.+|.
T Consensus        82 -s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          82 -GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             -HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence             6666777765100        139999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.77  E-value=2.6e-18  Score=105.37  Aligned_cols=89  Identities=26%  Similarity=0.484  Sum_probs=68.4

Q ss_pred             cccCHHHHHhhhcCC------CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh----h--------cc--Chhh
Q 033515            6 SYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ----E--------VR--GPTC   65 (117)
Q Consensus         6 ~~is~~e~~~~~~~~------~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~----~--------~~--g~~~   65 (117)
                      ..|++++++++++.+      +++|||||++ ||..||||||+|||...+..+..++.+    .        |.  |.+ 
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~r-   79 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGR-   79 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcc-
Confidence            578999999999854      5889999999 999999999999999887765544433    1        43  455 


Q ss_pred             hHHHHHHHHHHHHhCCC--ceEEEccccHHHHH
Q 033515           66 AKRLANYLDEVKEDTGI--NSIFVLERGFKGWE   96 (117)
Q Consensus        66 a~~~~~~l~~~l~~~G~--~~v~~l~gG~~~W~   96 (117)
                      +..++..+.+.|+..||  .++++|+||+.+|.
T Consensus        80 s~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          80 GPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             cHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            44555555555555786  68999999999994

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.77  E-value=3.2e-18  Score=104.91  Aligned_cols=92  Identities=37%  Similarity=0.610  Sum_probs=68.5

Q ss_pred             CcccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh--------h----c--cChhhhHH
Q 033515            5 ISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--------E----V--RGPTCAKR   68 (117)
Q Consensus         5 ~~~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~--------~----~--~g~~~a~~   68 (117)
                      ++.|+++++.+++..  ++++|||||++ ||..+|||||+|+|...+.....++.+        .    |  .|.+ +..
T Consensus         1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r-~~~   78 (113)
T cd01531           1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVR-GPS   78 (113)
T ss_pred             CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcc-hHH
Confidence            468999999999874  45789999999 999999999999999887655544421        1    4  3344 444


Q ss_pred             HHHHHHHHHHh----CCCceEEEccccHHHHHhC
Q 033515           69 LANYLDEVKED----TGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        69 ~~~~l~~~l~~----~G~~~v~~l~gG~~~W~~~   98 (117)
                      ++..+.+.|..    .|+++|++|+||+.+|...
T Consensus        79 aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          79 AARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             HHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            45544432221    4999999999999999764

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.76  E-value=1.1e-18  Score=106.08  Aligned_cols=90  Identities=27%  Similarity=0.489  Sum_probs=64.0

Q ss_pred             CHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccch--------hHHHH----HHhh----h------c-cChhh
Q 033515            9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDKIF----DLIQ----E------V-RGPTC   65 (117)
Q Consensus         9 s~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l--------~~~~~----~~~~----~------~-~g~~~   65 (117)
                      |++|+++++++++++|||||++.+|..||||||+|||...+        .....    ....    .      | .|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            68999999977889999999999999999999999999443        11111    1111    1      3 45553


Q ss_pred             hHHHHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515           66 AKRLANYLDEVKEDTGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        66 a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~   98 (117)
                      ...++..+...|..+||++|++|+||+.+|.++
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            333333333346669999999999999999763

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.76  E-value=1.9e-18  Score=125.16  Aligned_cols=98  Identities=23%  Similarity=0.386  Sum_probs=80.4

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh--hh-------ccChhhhHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI--QE-------VRGPTCAKRLANYLDE   75 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~--~~-------~~g~~~a~~~~~~l~~   75 (117)
                      ++.|+++++.+++++ +.+|||||++.||..||||||+|+|...+..+..++.  +.       ..|.+ +..++..|..
T Consensus         2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~IvvyC~~G~r-s~~aa~~L~~   79 (376)
T PRK08762          2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHLPDRDREIVLICASGTR-SAHAAATLRE   79 (376)
T ss_pred             CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhcCCCCCeEEEEcCCCcH-HHHHHHHHHH
Confidence            678999999999874 5899999999999999999999999988776665542  22       34555 5566766666


Q ss_pred             HHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           76 VKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        76 ~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                          .||++|++|+||+.+|...|+|++..+..
T Consensus        80 ----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~  108 (376)
T PRK08762         80 ----LGYTRVASVAGGFSAWKDAGLPLERPRLL  108 (376)
T ss_pred             ----cCCCceEeecCcHHHHHhcCCccccccCC
Confidence                99999999999999999999998876543

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.76  E-value=1.4e-18  Score=105.07  Aligned_cols=83  Identities=24%  Similarity=0.393  Sum_probs=64.1

Q ss_pred             CHHHHHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHH-------HH-H-----hhh------c-cChhhhH
Q 033515            9 SGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI-------FD-L-----IQE------V-RGPTCAK   67 (117)
Q Consensus         9 s~~e~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~-------~~-~-----~~~------~-~g~~~a~   67 (117)
                      +++++.++++ .++.+|||+|++.||..||||||+|+|...+....       .. +     .+.      | .|.+ +.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVR-SK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHH-HH
Confidence            6789999887 67799999999999999999999999987754211       11 1     111      3 4555 55


Q ss_pred             HHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515           68 RLANYLDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        68 ~~~~~l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                      .++..|..    +||++|+.|+||+.+|.
T Consensus        81 ~~~~~l~~----~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          81 AAAELARS----LGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHHHHHHH----cCCccceecCCcHHHHc
Confidence            66666666    99999999999999995

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.76  E-value=2e-18  Score=108.04  Aligned_cols=83  Identities=28%  Similarity=0.527  Sum_probs=62.9

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhH------------------------------HHH---
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------------------------KIF---   54 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~------------------------------~~~---   54 (117)
                      |+++|+.++++ .+++|||||++.||..||||||+|||...+..                              ...   
T Consensus         1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd01520           1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAW   79 (128)
T ss_pred             CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            68999999987 67899999999999999999999999864321                              111   


Q ss_pred             --HHhhh------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh
Q 033515           55 --DLIQE------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA   97 (117)
Q Consensus        55 --~~~~~------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~   97 (117)
                        .+.+.      |  .|.+ |..++..|..    +|| +|++|+||+.+|+.
T Consensus        80 ~~~i~~~~~vvvyC~~~G~r-s~~a~~~L~~----~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          80 EARLERDPKLLIYCARGGMR-SQSLAWLLES----LGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HhccCCCCeEEEEeCCCCcc-HHHHHHHHHH----cCC-ceeEeCCcHHHHHh
Confidence              12222      5  3566 5566666665    999 69999999999964

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>PRK01415 hypothetical protein; Validated

Probab=99.74  E-value=9e-18  Score=115.00  Aligned_cols=91  Identities=16%  Similarity=0.319  Sum_probs=73.9

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH---H---HHHhhh------c-cChhhhHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---I---FDLIQE------V-RGPTCAKRLA   70 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~---~~~~~~------~-~g~~~a~~~~   70 (117)
                      ....|+|+++.+++++++++|||||++.||..||||||+|+|...+...   .   ..+.++      | +|.+ +..++
T Consensus       110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiR-s~kAa  188 (247)
T PRK01415        110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIR-CEKST  188 (247)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChH-HHHHH
Confidence            3468999999999988889999999999999999999999998766532   2   122222      4 5777 66777


Q ss_pred             HHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515           71 NYLDEVKEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                      ..|.+    .||++|+.|.||+.+|.+..
T Consensus       189 ~~L~~----~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        189 SLLKS----IGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             HHHHH----cCCCcEEEechHHHHHHHhc
Confidence            77777    99999999999999998754

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.73  E-value=1.6e-17  Score=102.91  Aligned_cols=89  Identities=26%  Similarity=0.399  Sum_probs=66.9

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCC-------CcccCCcccccccCCccchhHH-------------HHH-H-----hhh-
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDD-------ERSYDGHITGSLHYPSDSFTDK-------------IFD-L-----IQE-   59 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~-------~e~~~ghIpga~~ip~~~l~~~-------------~~~-~-----~~~-   59 (117)
                      .++++++.++++.++.+|||+|++       .+|..+|||||+|+|...+...             +.. +     .+. 
T Consensus         1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (122)
T cd01448           1 LVSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDD   80 (122)
T ss_pred             CcCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence            378999999998767899999999       9999999999999998665321             111 1     111 


Q ss_pred             -----ccC-hhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515           60 -----VRG-PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        60 -----~~g-~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                           |.+ ...+..++..|..    +||++|++|+||+.+|..+|
T Consensus        81 ~vv~~c~~g~~~a~~~~~~l~~----~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          81 TVVVYDDGGGFFAARAWWTLRY----FGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEEECCCCCccHHHHHHHHHH----cCCCCEEEecCCHHHHHhCc
Confidence                 433 2335566666666    99999999999999998764

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.73  E-value=1e-17  Score=127.32  Aligned_cols=98  Identities=23%  Similarity=0.322  Sum_probs=74.0

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccch-----------------hHHHHHHhh--h------c
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF-----------------TDKIFDLIQ--E------V   60 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l-----------------~~~~~~~~~--~------~   60 (117)
                      ..|++++|.+++++++++|||+|++.+|..||||||+|+|.+.+                 ...+.++.-  +      +
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            57999999999998889999999999999999999999985421                 122222211  1      3


Q ss_pred             c-ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           61 R-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        61 ~-g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                      . |...+..+++.|..    +||++|++|+||+.+|..+|+|+++...
T Consensus        89 ~~g~~~A~R~~w~L~~----~G~~~V~iLdGG~~aW~~ag~p~~~~~~  132 (610)
T PRK09629         89 DEGGGWAGRFIWLLDV----IGHSGYHYLDGGVLAWEAQALPLSTDVP  132 (610)
T ss_pred             CCCCchHHHHHHHHHH----cCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence            2 32224455555555    9999999999999999999999987643

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.73  E-value=1.4e-17  Score=116.46  Aligned_cols=100  Identities=22%  Similarity=0.351  Sum_probs=73.0

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCC----------CCcccCCcccccccCCccchhH-----------------HHHHHh-
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRD----------DERSYDGHITGSLHYPSDSFTD-----------------KIFDLI-   57 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~----------~~e~~~ghIpga~~ip~~~l~~-----------------~~~~~~-   57 (117)
                      ..++++++.+.+++++++|||+|+          +.+|..||||||+|+|...+..                 .+.++. 
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            368999999999888899999997          5789999999999998654321                 111110 


Q ss_pred             -hh------ccC-hhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515           58 -QE------VRG-PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  109 (117)
Q Consensus        58 -~~------~~g-~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~  109 (117)
                       ++      |.+ ...+..++..|..    +||++|++|+||+.+|..+|+|+++....+
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~  140 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRT----FGVEKVSILAGGLAGWQRDDLLLEEGAVEL  140 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHH----hcCCcEEEcCCCHHHHHHcCCCccCCCCCC
Confidence             11      333 2224444555555    999999999999999999999998775443

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.72  E-value=8.9e-18  Score=100.11  Aligned_cols=73  Identities=23%  Similarity=0.372  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHH------hhh------c-cChhhhHHHHHHHHHHHHhCCCceE
Q 033515           19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL------IQE------V-RGPTCAKRLANYLDEVKEDTGINSI   85 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~------~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v   85 (117)
                      +++.+|||||++.+|..+|||||+|+|...+......+      .+.      | .|.+ +..++..|..    .||++|
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~~~~~l~~----~G~~~v   84 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLL-ARFAAQELLA----LGGKPV   84 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHH-HHHHHHHHHH----cCCCCE
Confidence            46789999999999999999999999987654322222      222      4 3454 5555666665    999999


Q ss_pred             EEccccHHHHH
Q 033515           86 FVLERGFKGWE   96 (117)
Q Consensus        86 ~~l~gG~~~W~   96 (117)
                      ++|+||+.+|.
T Consensus        85 ~~l~GG~~~W~   95 (96)
T cd01529          85 ALLDGGTSAWV   95 (96)
T ss_pred             EEeCCCHHHhc
Confidence            99999999995

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.72  E-value=9.1e-18  Score=99.48  Aligned_cols=78  Identities=29%  Similarity=0.602  Sum_probs=59.1

Q ss_pred             CCCeEEEecCCCCcccCCcccccccCCccchhHHHH--------------HHhhh------c-cChhhhHHHHHHHHHHH
Q 033515           19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF--------------DLIQE------V-RGPTCAKRLANYLDEVK   77 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~--------------~~~~~------~-~g~~~a~~~~~~l~~~l   77 (117)
                      +++++|||+|+..+|..+|||||+|+|...+.....              ...+.      | .|.+ +..++..|..  
T Consensus         2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~-a~~~~~~l~~--   78 (100)
T smart00450        2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNR-SAKAAWLLRE--   78 (100)
T ss_pred             CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcH-HHHHHHHHHH--
Confidence            357899999999999999999999999876553211              11111      3 3444 5566666666  


Q ss_pred             HhCCCceEEEccccHHHHHhCCCC
Q 033515           78 EDTGINSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        78 ~~~G~~~v~~l~gG~~~W~~~g~~  101 (117)
                        +||++|++|+||+.+|...+.+
T Consensus        79 --~G~~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       79 --LGFKNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             --cCCCceEEecCCHHHHHhcCCC
Confidence              9999999999999999988754

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.72  E-value=2.2e-17  Score=116.97  Aligned_cols=90  Identities=17%  Similarity=0.338  Sum_probs=73.1

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh------hh-------ccChhhhHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI------QE-------VRGPTCAKRLA   70 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~------~~-------~~g~~~a~~~~   70 (117)
                      ....++++++.+++++++++|||||++.||..||||||+|+|...+......+.      ++       .+|.+ +..++
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~R-s~~aa  188 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIR-CEKAS  188 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcH-HHHHH
Confidence            346799999999998788999999999999999999999999987764332221      11       46788 55667


Q ss_pred             HHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515           71 NYLDEVKEDTGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~   98 (117)
                      ..|.+    .||++|+.|+||+.+|...
T Consensus       189 ~~L~~----~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        189 AWMKH----EGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHH----cCCCcEEEecchHHHHHHh
Confidence            77777    9999999999999999764

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.71  E-value=3e-17  Score=113.47  Aligned_cols=90  Identities=20%  Similarity=0.317  Sum_probs=71.3

Q ss_pred             CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHH---HHHHh---hh-------ccChh
Q 033515            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---IFDLI---QE-------VRGPT   64 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~~~~~---~~-------~~g~~   64 (117)
                      ....+++.++.+++++      ++.+|||||++.||..||||||+|||...+..+   +....   ++       ..|.+
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~R  187 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGIR  187 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCHH
Confidence            3578999999998864      247899999999999999999999999876543   22221   12       45677


Q ss_pred             hhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515           65 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        65 ~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~   98 (117)
                       +..++..|++    .||++|+.|.||+.+|.++
T Consensus       188 -s~~Aa~~L~~----~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        188 -CEKAAIHMQE----VGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             -HHHHHHHHHH----cCCcceEEeccCHHHHHHh
Confidence             6667777777    9999999999999999764

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.71  E-value=2.5e-17  Score=101.36  Aligned_cols=84  Identities=24%  Similarity=0.392  Sum_probs=63.2

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcccC-----------CcccccccCCccchhH-------------HHHHHh--hh--
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERSYD-----------GHITGSLHYPSDSFTD-------------KIFDLI--QE--   59 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~~~-----------ghIpga~~ip~~~l~~-------------~~~~~~--~~--   59 (117)
                      ++++++.+++++.+++|||||+..||..           ||||||+|+|...+..             .+..+.  +.  
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            5789999988766789999999999976           9999999999875431             111111  11  


Q ss_pred             ----cc-ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515           60 ----VR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        60 ----~~-g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                          |. |.+ +..++..|..    +||++|++|+||+.+|.
T Consensus        81 iv~yc~~g~~-s~~~~~~l~~----~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          81 VIVYCGSGVT-ACVLLLALEL----LGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             EEEECCcHHH-HHHHHHHHHH----cCCCCeeeeCChHHHhc
Confidence                43 455 5556666666    99999999999999995

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.71  E-value=1.7e-17  Score=117.99  Aligned_cols=98  Identities=26%  Similarity=0.375  Sum_probs=71.6

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecC--------C-CCcccCCcccccccCCccchhHH-----------------HHHHh-
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVR--------D-DERSYDGHITGSLHYPSDSFTDK-----------------IFDLI-   57 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR--------~-~~e~~~ghIpga~~ip~~~l~~~-----------------~~~~~-   57 (117)
                      -..|++++|.+++++++++|||+|        . ..+|..||||||+|++...+...                 +.++. 
T Consensus        21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi  100 (320)
T PLN02723         21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI  100 (320)
T ss_pred             CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence            358999999999987789999996        2 26899999999999986543321                 11111 


Q ss_pred             -hh-------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           58 -QE-------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        58 -~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                       +.       ..|...+..+++.|..    +||++|++|+||+.+|..+|+|+++..
T Consensus       101 ~~~~~VVvY~~~g~~~a~r~~~~L~~----~G~~~V~~LdGG~~~W~~~G~pv~~~~  153 (320)
T PLN02723        101 ENKDGVVVYDGKGIFSAARVWWMFRV----FGHEKVWVLDGGLPKWRASGYDVESSA  153 (320)
T ss_pred             CCCCEEEEEcCCCcchHHHHHHHHHH----cCCCceEEcCCCHHHHHHcCCCcccCC
Confidence             01       2333324444455555    999999999999999999999998754

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.71  E-value=2e-17  Score=102.06  Aligned_cols=86  Identities=16%  Similarity=0.327  Sum_probs=66.8

Q ss_pred             cCHHHHHhhhcC-CCeEEEecCCCCccc-CCcccccccCCccchhH---------HHHHH-hhh------c-cChhhhHH
Q 033515            8 ISGSQLLSLKRR-PNIAVIDVRDDERSY-DGHITGSLHYPSDSFTD---------KIFDL-IQE------V-RGPTCAKR   68 (117)
Q Consensus         8 is~~e~~~~~~~-~~~~iiDvR~~~e~~-~ghIpga~~ip~~~l~~---------~~~~~-~~~------~-~g~~~a~~   68 (117)
                      |+++++.+++++ ++.+|||||++.||. .||||||+|+|...+..         .+..+ .+.      | .|.+ +..
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~r-s~~   79 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNR-SIA   79 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCcc-HHH
Confidence            688999999885 578999999999999 99999999999875431         11111 111      4 4555 666


Q ss_pred             HHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515           69 LANYLDEVKEDTGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        69 ~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~   98 (117)
                      ++..|.+    +||++|+.|.||+.+|...
T Consensus        80 aa~~L~~----~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          80 AAEAAAQ----AGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHH----CCCCeEEECcCceecCCCC
Confidence            7777777    9999999999999999664

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.69  E-value=5.6e-17  Score=96.08  Aligned_cols=77  Identities=29%  Similarity=0.424  Sum_probs=57.7

Q ss_pred             hhcCCCeEEEecCCCCcccCCcccccccCCccchhH-HHHHHhh-h------c-cChhh-hHHHHHHHHHHHHhCCCceE
Q 033515           16 LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQ-E------V-RGPTC-AKRLANYLDEVKEDTGINSI   85 (117)
Q Consensus        16 ~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-~~~~~~~-~------~-~g~~~-a~~~~~~l~~~l~~~G~~~v   85 (117)
                      ++++.+++|||+|++.||..+|||||+|||...+.. ....++. +      | .|.+. +..++..|.+    .||++|
T Consensus         5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~----~G~~~v   80 (92)
T cd01532           5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSE----LGYTDV   80 (92)
T ss_pred             hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHH----cCccCE
Confidence            445567899999999999999999999999887653 2222322 2      3 44432 4555666666    999999


Q ss_pred             EEccccHHHHH
Q 033515           86 FVLERGFKGWE   96 (117)
Q Consensus        86 ~~l~gG~~~W~   96 (117)
                      ++|+||+.+|.
T Consensus        81 ~~l~GG~~~W~   91 (92)
T cd01532          81 ALLEGGLQGWR   91 (92)
T ss_pred             EEccCCHHHHc
Confidence            99999999995

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.68  E-value=4.5e-17  Score=95.01  Aligned_cols=79  Identities=27%  Similarity=0.546  Sum_probs=60.9

Q ss_pred             HHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHH--HHHhhh------c-cChhhhHHHHHHHHHHHHhCCCc
Q 033515           13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--FDLIQE------V-RGPTCAKRLANYLDEVKEDTGIN   83 (117)
Q Consensus        13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~--~~~~~~------~-~g~~~a~~~~~~l~~~l~~~G~~   83 (117)
                      +..+++.++..|||+|++.+|..+|||||+|+|...+....  ....+.      + .|.+ +..++..|..    .||+
T Consensus         2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~~~~~~~~~~~vv~~c~~~~~-a~~~~~~l~~----~G~~   76 (89)
T cd00158           2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERAALLELDKDKPIVVYCRSGNR-SARAAKLLRK----AGGT   76 (89)
T ss_pred             hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHHHhhccCCCCeEEEEeCCCch-HHHHHHHHHH----hCcc
Confidence            44555567899999999999999999999999998766542  222222      3 3444 6677777777    9999


Q ss_pred             eEEEccccHHHHH
Q 033515           84 SIFVLERGFKGWE   96 (117)
Q Consensus        84 ~v~~l~gG~~~W~   96 (117)
                      +|++|.||+.+|.
T Consensus        77 ~v~~l~gG~~~w~   89 (89)
T cd00158          77 NVYNLEGGMLAWK   89 (89)
T ss_pred             cEEEecCChhhcC
Confidence            9999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.66  E-value=2.4e-16  Score=114.77  Aligned_cols=92  Identities=24%  Similarity=0.301  Sum_probs=73.9

Q ss_pred             CcccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhH--HHHHHhhh-------ccChhhhHHHHHHHH
Q 033515            5 ISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--KIFDLIQE-------VRGPTCAKRLANYLD   74 (117)
Q Consensus         5 ~~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~--~~~~~~~~-------~~g~~~a~~~~~~l~   74 (117)
                      ...|+++|+.++++. .+++|||||++.||..+|||||+|+|...+..  ....+++.       ..|.+ |..++..|.
T Consensus       286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~~~~~l~~d~~iVvyC~~G~r-S~~aa~~L~  364 (392)
T PRK07878        286 GSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGEALAKLPQDRTIVLYCKTGVR-SAEALAALK  364 (392)
T ss_pred             CCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchhHHhhCCCCCcEEEEcCCChH-HHHHHHHHH
Confidence            467999999998874 35789999999999999999999999987654  34444433       45666 666777777


Q ss_pred             HHHHhCCCceEEEccccHHHHHhCCCC
Q 033515           75 EVKEDTGINSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        75 ~~l~~~G~~~v~~l~gG~~~W~~~g~~  101 (117)
                      +    .||++|++|+||+.+|..+..+
T Consensus       365 ~----~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        365 K----AGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             H----cCCCcEEEecCcHHHHHHhcCC
Confidence            7    9999999999999999877543

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.65  E-value=2.8e-16  Score=99.62  Aligned_cols=84  Identities=23%  Similarity=0.284  Sum_probs=59.7

Q ss_pred             cCHHHHHhhhc----CCCeEEEecCCC--------CcccC------------CcccccccCCccchhHH-------H---
Q 033515            8 ISGSQLLSLKR----RPNIAVIDVRDD--------ERSYD------------GHITGSLHYPSDSFTDK-------I---   53 (117)
Q Consensus         8 is~~e~~~~~~----~~~~~iiDvR~~--------~e~~~------------ghIpga~~ip~~~l~~~-------~---   53 (117)
                      ++++++.+.++    +++++|||+|..        .+|..            ||||||+|+|...+...       .   
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            57899999987    467999999987        88987            99999999996543210       0   


Q ss_pred             HHHhhh---------------cc----ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515           54 FDLIQE---------------VR----GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        54 ~~~~~~---------------~~----g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                      .++...               +.    |.. +..++..|.    .+|+++|++|+||+.+|+
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~-A~r~~~~l~----~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFT-ACHIALAAR----LCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchH-HHHHHHHHH----HcCCCCeEEeCCCHHHhh
Confidence            011111               32    333 334444444    499999999999999995

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.64  E-value=4.6e-16  Score=93.73  Aligned_cols=72  Identities=21%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------c-cChhhhHHHHHHHHHHHHhCCCceEEEccc
Q 033515           20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------V-RGPTCAKRLANYLDEVKEDTGINSIFVLER   90 (117)
Q Consensus        20 ~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~g   90 (117)
                      ....+||+|+++||..||||||+|||...+.....++..+        | .|.+ |..++..|.+    +||++|..+ |
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~~~~~~~vvlyC~~G~r-S~~aa~~L~~----~G~~~v~~~-G   90 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAVPDKNDTVKLYCNAGRQ-SGMAKDILLD----MGYTHAENA-G   90 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhCCCCCCeEEEEeCCCHH-HHHHHHHHHH----cCCCeEEec-C
Confidence            4567999999999999999999999998887766654322        4 4555 6667777776    999999885 9


Q ss_pred             cHHHHHh
Q 033515           91 GFKGWEA   97 (117)
Q Consensus        91 G~~~W~~   97 (117)
                      |+.+|..
T Consensus        91 G~~~~~~   97 (101)
T TIGR02981        91 GIKDIAM   97 (101)
T ss_pred             CHHHhhh
Confidence            9999965

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.63  E-value=8e-16  Score=93.24  Aligned_cols=88  Identities=24%  Similarity=0.434  Sum_probs=71.2

Q ss_pred             HHhhhcCCCeEEEecCCCCcccCCcccc-cccCCccchhHHHHHH--hhh------c-cChhhhHHHHHHHHHHHHhCCC
Q 033515           13 LLSLKRRPNIAVIDVRDDERSYDGHITG-SLHYPSDSFTDKIFDL--IQE------V-RGPTCAKRLANYLDEVKEDTGI   82 (117)
Q Consensus        13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpg-a~~ip~~~l~~~~~~~--~~~------~-~g~~~a~~~~~~l~~~l~~~G~   82 (117)
                      ...+....+.++||||++.||..+|||+ ++|+|...+.......  .++      | +|.+ +..++..|..    .||
T Consensus        12 ~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~~~~~~~ivv~C~~G~r-S~~aa~~L~~----~G~   86 (110)
T COG0607          12 AALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLELPDDDPIVVYCASGVR-SAAAAAALKL----AGF   86 (110)
T ss_pred             HHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccccCCCCeEEEEeCCCCC-hHHHHHHHHH----cCC
Confidence            3334445678999999999999999999 9999999988765554  222      4 5666 7788888887    999


Q ss_pred             ceEEEccccHHHHHhCCCCcccc
Q 033515           83 NSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        83 ~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                      ++++.+.||+.+|...+.++...
T Consensus        87 ~~~~~l~gG~~~w~~~~~~~~~~  109 (110)
T COG0607          87 TNVYNLDGGIDAWKGAGLPLVRG  109 (110)
T ss_pred             ccccccCCcHHHHHhcCCCcccC
Confidence            98889999999999999887653

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.62  E-value=8.1e-16  Score=107.25  Aligned_cols=103  Identities=22%  Similarity=0.268  Sum_probs=75.1

Q ss_pred             CCcccCHHHHHhhhcCC-----CeEEEecCCC--CcccCCcccccccCCccchhHHH----------HHHhhh-------
Q 033515            4 SISYISGSQLLSLKRRP-----NIAVIDVRDD--ERSYDGHITGSLHYPSDSFTDKI----------FDLIQE-------   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~-----~~~iiDvR~~--~e~~~ghIpga~~ip~~~l~~~~----------~~~~~~-------   59 (117)
                      ....+++++|.+.+.++     +..+++++..  .+|..+|||||++++.+.+....          ..|.+.       
T Consensus         9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~   88 (285)
T COG2897           9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR   88 (285)
T ss_pred             cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            35678999999988755     5667777666  88999999999999876543211          111111       


Q ss_pred             ---------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCCC
Q 033515           60 ---------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPC  110 (117)
Q Consensus        60 ---------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~  110 (117)
                               ..+...|..+++.|+.    +|+++|++|+||+.+|.++|+|+++.+..+.
T Consensus        89 ~d~tVVvYdd~~~~~A~ra~W~l~~----~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~  144 (285)
T COG2897          89 NDDTVVVYDDGGGFFAARAWWLLRY----LGHENVRILDGGLPAWKAAGLPLETEPPEPP  144 (285)
T ss_pred             CCCEEEEECCCCCeehHHHHHHHHH----cCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence                     2333335566666666    9999999999999999999999998655443

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.61  E-value=1.2e-15  Score=108.59  Aligned_cols=93  Identities=26%  Similarity=0.301  Sum_probs=67.3

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcc-----------cCCcccccccCCccchhH---------HHHH-H-----hhh--
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTD---------KIFD-L-----IQE--   59 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~~l~~---------~~~~-~-----~~~--   59 (117)
                      ++.+++...++.++++|||+|++.||           ..||||||+|||...+..         .+.. +     .++  
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~  271 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP  271 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence            57888988887677899999999888           569999999999854321         1111 1     111  


Q ss_pred             ----c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCcccc
Q 033515           60 ----V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRC  105 (117)
Q Consensus        60 ----~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~~  105 (117)
                          | +|.+ |..++..|..    +||++|++|+|||.+|... ..|++++
T Consensus       272 iv~yC~sG~~-A~~~~~~L~~----~G~~~v~~YdGs~~eW~~~~~~Pv~~~  318 (320)
T PLN02723        272 IVASCGTGVT-ACILALGLHR----LGKTDVPVYDGSWTEWGALPDTPVATS  318 (320)
T ss_pred             EEEECCcHHH-HHHHHHHHHH----cCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence                3 4555 4444555555    9999999999999999875 5777754

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.60  E-value=2e-15  Score=91.39  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=58.2

Q ss_pred             CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------c-cChhhhHHHHHHHHHHHHhCCCceEEEcc
Q 033515           19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------V-RGPTCAKRLANYLDEVKEDTGINSIFVLE   89 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~   89 (117)
                      ...-+|||+|++.||..+|||||+|+|...+..++..+...        | .|.+ |..++..|.+    .||++|++ .
T Consensus        18 ~~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~~~~~~~IVlyC~~G~r-S~~aa~~L~~----~G~~~v~~-~   91 (104)
T PRK10287         18 FAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKLYCNAGRQ-SGQAKEILSE----MGYTHAEN-A   91 (104)
T ss_pred             cCCCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcCCCCCCeEEEEeCCChH-HHHHHHHHHH----cCCCeEEe-c
Confidence            34567999999999999999999999998887766665322        4 4555 6667777776    99999977 6


Q ss_pred             ccHHHHHh
Q 033515           90 RGFKGWEA   97 (117)
Q Consensus        90 gG~~~W~~   97 (117)
                      ||+.+|..
T Consensus        92 GG~~~~~~   99 (104)
T PRK10287         92 GGLKDIAM   99 (104)
T ss_pred             CCHHHHhh
Confidence            99999964

>PRK07411 hypothetical protein; Validated

Probab=99.60  E-value=2.2e-15  Score=109.65  Aligned_cols=92  Identities=23%  Similarity=0.385  Sum_probs=71.9

Q ss_pred             CCcccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH-----HHHHHhhh-------ccChhhhHHH
Q 033515            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KIFDLIQE-------VRGPTCAKRL   69 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-----~~~~~~~~-------~~g~~~a~~~   69 (117)
                      .+..|+++|+.++++..  +.+|||||++.||..||||||+|||...+..     .+.++.++       .+|.+ |..+
T Consensus       280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~R-S~~a  358 (390)
T PRK07411        280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGR-SAKA  358 (390)
T ss_pred             ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHH-HHHH
Confidence            56789999999988743  5789999999999999999999999887653     23333333       45676 6667


Q ss_pred             HHHHHHHHHhCCCceEEEccccHHHHHhCCCC
Q 033515           70 ANYLDEVKEDTGINSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        70 ~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~  101 (117)
                      +..|++    .||++ +.|.||+.+|.++..|
T Consensus       359 a~~L~~----~G~~~-~~l~GG~~~W~~~~~p  385 (390)
T PRK07411        359 LGILKE----AGIEG-TNVKGGITAWSREVDP  385 (390)
T ss_pred             HHHHHH----cCCCe-EEecchHHHHHHhcCC
Confidence            777777    99975 5799999999887554

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.59  E-value=4.8e-15  Score=103.75  Aligned_cols=93  Identities=20%  Similarity=0.333  Sum_probs=66.5

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCccc-----------CCcccccccCCccchhHH-----HHHH---------hhh---
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFTDK-----IFDL---------IQE---   59 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~~-----------~ghIpga~~ip~~~l~~~-----~~~~---------~~~---   59 (117)
                      .+.+++...++..+++|||+|++.||.           .||||||+|+|...+...     ..++         ..+   
T Consensus       155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i  234 (281)
T PRK11493        155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI  234 (281)
T ss_pred             ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence            344566666665678999999999984           699999999997654320     1122         111   


Q ss_pred             ---c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCcccc
Q 033515           60 ---V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  105 (117)
Q Consensus        60 ---~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~  105 (117)
                         | +|.+ |..++..|..    +||++|++|+|||.+|.. .++|++++
T Consensus       235 i~yC~~G~~-A~~~~~~l~~----~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        235 IASCGSGVT-AAVVVLALAT----LDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             EEECCcHHH-HHHHHHHHHH----cCCCCceeeCCCHHHHccCCCCCcCCC
Confidence               4 4666 4455555555    999999999999999987 68898754

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.56  E-value=6.7e-15  Score=112.10  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCCCccc--------CCcccccccCCccchh---------HHHHHHh------hh----
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSFT---------DKIFDLI------QE----   59 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~--------~ghIpga~~ip~~~l~---------~~~~~~~------~~----   59 (117)
                      .++.+++.+.+++++++|||+|+++||.        .||||||+|||...+.         ..+..+-      .+    
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV  227 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI  227 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence            5788999998887788999999999994        6999999999975321         1121111      11    


Q ss_pred             --c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCcccc
Q 033515           60 --V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRC  105 (117)
Q Consensus        60 --~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~~  105 (117)
                        | +|.+ |..++..|+.    +||++|++|+|||.+|... +.|+++.
T Consensus       228 vYC~sG~r-Aa~~~~~L~~----lG~~~V~~YdGsw~eW~~~~~lPv~~~  272 (610)
T PRK09629        228 THCQTHHR-SGFTYLVAKA----LGYPRVKAYAGSWGEWGNHPDTPVEVP  272 (610)
T ss_pred             EECCCChH-HHHHHHHHHH----cCCCCcEEeCCCHHHHhCCCCCccccC
Confidence              3 4555 4444555554    9999999999999999875 6787754

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.55  E-value=1.2e-14  Score=102.91  Aligned_cols=79  Identities=22%  Similarity=0.237  Sum_probs=58.1

Q ss_pred             CeEEEecCCCCcccCCcccccccCCccchh------------------------------HHHHHH----hhh------c
Q 033515           21 NIAVIDVRDDERSYDGHITGSLHYPSDSFT------------------------------DKIFDL----IQE------V   60 (117)
Q Consensus        21 ~~~iiDvR~~~e~~~ghIpga~~ip~~~l~------------------------------~~~~~~----~~~------~   60 (117)
                      +..|||||++.||..||||||+|||+....                              ..+.++    ...      |
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            457999999999999999999999995421                              111111    111      4


Q ss_pred             --cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           61 --RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        61 --~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                        .|.+ |..++..|..    +|| +|++|+||+.+|...+.+....
T Consensus        82 ~~gG~R-S~~aa~~L~~----~G~-~v~~L~GG~~aw~~~~~~~~~~  122 (311)
T TIGR03167        82 WRGGMR-SGSLAWLLAQ----IGF-RVPRLEGGYKAYRRFVIDQLEE  122 (311)
T ss_pred             CCCChH-HHHHHHHHHH----cCC-CEEEecChHHHHHHhhhhhhhc
Confidence              3556 7677777777    999 6999999999999887655543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.53  E-value=3.4e-14  Score=89.21  Aligned_cols=92  Identities=16%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             ccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhHHH------------------HHHh---hh----
Q 033515            7 YISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI------------------FDLI---QE----   59 (117)
Q Consensus         7 ~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~------------------~~~~---~~----   59 (117)
                      .|+++++.++++.  ++++|||||+..+|..+|||||+|+|...+....                  ..+.   ..    
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VVv   80 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVVV   80 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEEE
Confidence            4799999999974  4789999999999999999999999987533110                  0111   11    


Q ss_pred             --ccCh-----hhhHHHHHHHHHHHHh--CCCceEEEccccHHHHHhCC
Q 033515           60 --VRGP-----TCAKRLANYLDEVKED--TGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        60 --~~g~-----~~a~~~~~~l~~~l~~--~G~~~v~~l~gG~~~W~~~g   99 (117)
                        ..+.     .++..+...+. .|..  .++.+|++|+||+.+|....
T Consensus        81 Yd~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~v~~L~GG~~~w~~~~  128 (132)
T cd01446          81 YDESSSDRERLREDSTAESVLG-KLLRKLQEGCSVYLLKGGFEQFSSEF  128 (132)
T ss_pred             EeCCCcchhhccccchHHHHHH-HHHHhcCCCceEEEEcchHHHHHhhC
Confidence              1221     12223333333 3444  36678999999999997753

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.52  E-value=1.7e-14  Score=103.98  Aligned_cols=85  Identities=18%  Similarity=0.330  Sum_probs=65.1

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHH--Hhhh-------ccChhhhHHHHHHHHHH
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD--LIQE-------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~--~~~~-------~~g~~~a~~~~~~l~~~   76 (117)
                      ..++++++....  .+.+|||||++.||..+|||||+|||...+......  +.+.       ..|.+ +..++..|.+ 
T Consensus       261 ~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~~~~~~~~~IvvyC~~G~r-S~~Aa~~L~~-  336 (355)
T PRK05597        261 EVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANPPSVSAGDEVVVYCAAGVR-SAQAVAILER-  336 (355)
T ss_pred             cccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhccccccCCCCCeEEEEcCCCHH-HHHHHHHHHH-
Confidence            467778888553  357899999999999999999999998876543211  2222       45566 6667777776 


Q ss_pred             HHhCCCceEEEccccHHHHHh
Q 033515           77 KEDTGINSIFVLERGFKGWEA   97 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~   97 (117)
                         .||++|++|+||+.+|.+
T Consensus       337 ---~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        337 ---AGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             ---cCCCCEEEecCcHHHHhh
Confidence               999999999999999965

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.50  E-value=8e-14  Score=97.30  Aligned_cols=96  Identities=22%  Similarity=0.345  Sum_probs=70.0

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccC----------CcccccccCCccchhH---------HHHHHhhh-------
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTD---------KIFDLIQE-------   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~----------ghIpga~~ip~~~l~~---------~~~~~~~~-------   59 (117)
                      ...+.++++..++.....|||+|++.+|..          ||||||+|||.+.+..         .+..+...       
T Consensus       156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~  235 (285)
T COG2897         156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDK  235 (285)
T ss_pred             ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCC
Confidence            345667788888777888999999999988          9999999999987654         22222211       


Q ss_pred             ------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCccccC
Q 033515           60 ------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT  106 (117)
Q Consensus        60 ------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~~~  106 (117)
                            .+|.+++ ...-.|+.    +|+.++++|+|+|..|... +.|+++++
T Consensus       236 ~vI~yCgsG~~As-~~~~al~~----lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         236 EVIVYCGSGVRAS-VTWLALAE----LGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             CEEEEcCCchHHH-HHHHHHHH----hCCCCcccccChHHHhhcCCCCccccCC
Confidence                  4566633 33334444    8888889999999999875 56887764

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.49  E-value=5.8e-14  Score=100.67  Aligned_cols=89  Identities=22%  Similarity=0.315  Sum_probs=64.7

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhH------------------------------HHH---
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------------------------KIF---   54 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~------------------------------~~~---   54 (117)
                      ....++.+++. .+.+|||||++.||..||||||+|+|......                              ...   
T Consensus         3 ~~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~   81 (345)
T PRK11784          3 PDAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW   81 (345)
T ss_pred             CcHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence            34677887765 57899999999999999999999999954211                              111   


Q ss_pred             -HHh-hh------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515           55 -DLI-QE------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        55 -~~~-~~------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~  103 (117)
                       .++ +.      |  .|.+ |..++..|..    +|| +|+.|+||+.+|...+.+..
T Consensus        82 ~~~~~~~~~ivvyC~rgG~R-S~~aa~~L~~----~G~-~v~~L~GG~~awr~~~~~~~  134 (345)
T PRK11784         82 ADFPRANPRGLLYCWRGGLR-SGSVQQWLKE----AGI-DVPRLEGGYKAYRRFVIDTL  134 (345)
T ss_pred             HhcccCCCeEEEEECCCChH-HHHHHHHHHH----cCC-CcEEEcCCHHHHHHhhHHHH
Confidence             111 12      5  3566 6666777766    999 58999999999988765443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.46  E-value=5.6e-14  Score=101.68  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=66.1

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccCCccc---ccccCCccchhHH------HHHHhhh------ccChhhhHHHH
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHIT---GSLHYPSDSFTDK------IFDLIQE------VRGPTCAKRLA   70 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIp---ga~~ip~~~l~~~------~~~~~~~------~~g~~~a~~~~   70 (117)
                      .+++++++.+++++++.+|||||++.||..+|||   ||+|||...+...      ...+++.      .+|.+ |..++
T Consensus       271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~~Ivv~C~sG~R-S~~Aa  349 (370)
T PRK05600        271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGDNVVVYCASGIR-SADFI  349 (370)
T ss_pred             cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCCcEEEECCCChh-HHHHH
Confidence            3688999999988667899999999999999998   5999999887532      2222222      56777 66777


Q ss_pred             HHHHHHHHhCCCce-EEEccccHH
Q 033515           71 NYLDEVKEDTGINS-IFVLERGFK   93 (117)
Q Consensus        71 ~~l~~~l~~~G~~~-v~~l~gG~~   93 (117)
                      ..|++    .||++ |+.|.||+.
T Consensus       350 ~~L~~----~G~~~~v~~l~GG~~  369 (370)
T PRK05600        350 EKYSH----LGHELTLHNLPGGVN  369 (370)
T ss_pred             HHHHH----cCCCCceEEeccccC
Confidence            87777    99986 999999975

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.36  E-value=1.7e-12  Score=90.12  Aligned_cols=88  Identities=23%  Similarity=0.416  Sum_probs=72.2

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------------ccChhhhHHHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------------VRGPTCAKRLAN   71 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------------~~g~~~a~~~~~   71 (117)
                      -..|+|.++.+++.++++++||+|+..||+-||..||++.+..++....+++...             ..|+||- .+..
T Consensus       112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCE-Kas~  190 (308)
T COG1054         112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCE-KASA  190 (308)
T ss_pred             cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeeh-hhHH
Confidence            4689999999999999999999999999999999999999998877644443322             4568855 5566


Q ss_pred             HHHHHHHhCCCceEEEccccHHHHHh
Q 033515           72 YLDEVKEDTGINSIFVLERGFKGWEA   97 (117)
Q Consensus        72 ~l~~~l~~~G~~~v~~l~gG~~~W~~   97 (117)
                      ++..    .||++|+.|+||+-.+.+
T Consensus       191 ~m~~----~GF~eVyhL~GGIl~Y~e  212 (308)
T COG1054         191 WMKE----NGFKEVYHLEGGILKYLE  212 (308)
T ss_pred             HHHH----hcchhhhcccchHHHHhh
Confidence            6666    999999999999987654

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=4.4e-12  Score=89.19  Aligned_cols=93  Identities=23%  Similarity=0.367  Sum_probs=65.4

Q ss_pred             CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHHH----HHHhhh--------------
Q 033515            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FDLIQE--------------   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~----~~~~~~--------------   59 (117)
                      .+..|+++.|+.++++      ...+|||+|-+.||..|||+||+||+.......+    ......              
T Consensus       154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq  233 (325)
T KOG3772|consen  154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQ  233 (325)
T ss_pred             cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeecc
Confidence            6789999999999983      1367999999999999999999999987544321    111110              


Q ss_pred             ccChhhhHHHHHHHHH---HH-----HhCCCceEEEccccHHHHHhCCC
Q 033515           60 VRGPTCAKRLANYLDE---VK-----EDTGINSIFVLERGFKGWEASGK  100 (117)
Q Consensus        60 ~~g~~~a~~~~~~l~~---~l-----~~~G~~~v~~l~gG~~~W~~~g~  100 (117)
                      .+|.+    ++..|+.   .+     -.+-|..+++|+||+..|...-.
T Consensus       234 ~RGP~----mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~  278 (325)
T KOG3772|consen  234 ERGPK----MARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP  278 (325)
T ss_pred             ccCHH----HHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence            34444    4444442   11     12466789999999999977644

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.23  E-value=1.9e-11  Score=84.53  Aligned_cols=98  Identities=20%  Similarity=0.288  Sum_probs=73.3

Q ss_pred             cccCHHHHHhhhcCCCeEEEecC---------CCCcccCCcccccccCCccchhHHH----------HHHhhh-------
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVR---------DDERSYDGHITGSLHYPSDSFTDKI----------FDLIQE-------   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR---------~~~e~~~ghIpga~~ip~~~l~~~~----------~~~~~~-------   59 (117)
                      ..+++..+.+.+.+.+++|||+.         ...||...|||||.+++.+.+....          ..|...       
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~   84 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD   84 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence            35788899998887789999993         2367888999999999887764211          112111       


Q ss_pred             ---------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           60 ---------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        60 ---------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                               .  .|...|..+++.++-    +|+++|.+|+||+.+|+..|+|+.+...
T Consensus        85 n~d~vViYd~~~~Gm~~Asrv~W~fr~----fGh~~VslL~GG~~~Wk~~g~~~~s~~~  139 (286)
T KOG1529|consen   85 NGDHVVIYDRGDGGMFSASRVWWTFRV----FGHTKVSLLNGGFRAWKAAGGPVDSSKV  139 (286)
T ss_pred             CCCeEEEEcCCCcceeehhhHHHHHHH----hCccEEEEecCcHHHHHHcCCccccccc
Confidence                     2  344445566665555    9999999999999999999999998765

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.06  E-value=2.2e-10  Score=85.66  Aligned_cols=65  Identities=26%  Similarity=0.350  Sum_probs=54.0

Q ss_pred             CCeEEEecCCCCcccCCcccc----cccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHHHHhCCCceEEEc
Q 033515           20 PNIAVIDVRDDERSYDGHITG----SLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEVKEDTGINSIFVL   88 (117)
Q Consensus        20 ~~~~iiDvR~~~e~~~ghIpg----a~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l   88 (117)
                      ++.++||||+++||..+||||    |+|+|...+......++++       .+|.+ |..++..|.+    .||++|+++
T Consensus       406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~l~~~~~iivyC~~G~r-S~~aa~~L~~----~G~~nv~~y  480 (482)
T PRK01269        406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGDLDQSKTYLLYCDRGVM-SRLQALYLRE----QGFSNVKVY  480 (482)
T ss_pred             CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhhcCCCCeEEEECCCCHH-HHHHHHHHHH----cCCccEEec
Confidence            578999999999999999999    9999999887766666544       46777 7777887777    999999876


Q ss_pred             c
Q 033515           89 E   89 (117)
Q Consensus        89 ~   89 (117)
                      .
T Consensus       481 ~  481 (482)
T PRK01269        481 R  481 (482)
T ss_pred             C
Confidence            4

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.02  E-value=2.7e-10  Score=80.90  Aligned_cols=89  Identities=20%  Similarity=0.254  Sum_probs=70.6

Q ss_pred             cccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHHHH-----HHhhh--------ccChhhhHHHHH
Q 033515            6 SYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-----DLIQE--------VRGPTCAKRLAN   71 (117)
Q Consensus         6 ~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~-----~~~~~--------~~g~~~a~~~~~   71 (117)
                      .+||..|++.+++. ...++||||++.||.-.|+|.|+|||+..+.....     .+...        .+|+. |+.+++
T Consensus       317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNd-SQ~Av~  395 (427)
T KOG2017|consen  317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGND-SQRAVR  395 (427)
T ss_pred             hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCc-hHHHHH
Confidence            57889999999985 67899999999999999999999999988876554     11111        57887 888888


Q ss_pred             HHHHHHHhCCCceEEEccccHHHHHhC
Q 033515           72 YLDEVKEDTGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        72 ~l~~~l~~~G~~~v~~l~gG~~~W~~~   98 (117)
                      .|+.   ..+...|+.+.||+.+|..+
T Consensus       396 ~Lre---~~~~~~vrDvigGl~~w~~~  419 (427)
T KOG2017|consen  396 ILRE---KFPDSSVRDVIGGLKAWAAK  419 (427)
T ss_pred             HHHh---hCCchhhhhhhhHHHHHHHh
Confidence            8875   23334688889999999765

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.59  E-value=1.7e-07  Score=66.24  Aligned_cols=100  Identities=22%  Similarity=0.258  Sum_probs=68.7

Q ss_pred             CCcccCHHHHHhhhcCC------CeEEEecCCCCcccCCcccccccCCccc-hhHHHHHHhhh----------ccChhhh
Q 033515            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDS-FTDKIFDLIQE----------VRGPTCA   66 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~------~~~iiDvR~~~e~~~ghIpga~~ip~~~-l~~~~~~~~~~----------~~g~~~a   66 (117)
                      .+++|+++.++.+++..      +-.|||+|-+.||..|||-+|+||.... |....-.-+..          -+..+ +
T Consensus       240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplThp~aLifHCEfSshR-a  318 (427)
T COG5105         240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLTHPRALIFHCEFSSHR-A  318 (427)
T ss_pred             chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHHHHHhccccCceeEEEEeeccccc-c
Confidence            46899999999998831      3469999999999999999999998753 44332211111          23445 5


Q ss_pred             HHHHHHHHH--HHHh------CCCceEEEccccHHHHHhCCCCccc
Q 033515           67 KRLANYLDE--VKED------TGINSIFVLERGFKGWEASGKPVCR  104 (117)
Q Consensus        67 ~~~~~~l~~--~l~~------~G~~~v~~l~gG~~~W~~~g~~~~~  104 (117)
                      ..++.+|+.  .+++      +=|+.|++|+||+.++......++.
T Consensus       319 P~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~lCd  364 (427)
T COG5105         319 PRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCD  364 (427)
T ss_pred             hhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCccccC
Confidence            566666655  1111      2356899999999998776554443

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.52  E-value=1.1e-07  Score=66.08  Aligned_cols=75  Identities=25%  Similarity=0.422  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCCCcc-----------cCCcccccccCCccchhHH------HHHHhhh----------------ccChhh
Q 033515           19 RPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTDK------IFDLIQE----------------VRGPTC   65 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~~l~~~------~~~~~~~----------------~~g~~~   65 (117)
                      .+++..||.|...+|           ..||||||+|+|...+-..      ..++...                ..|.. 
T Consensus       170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gis-  248 (286)
T KOG1529|consen  170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGIS-  248 (286)
T ss_pred             cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchh-
Confidence            357899999998776           5699999999999865421      1222221                35666 


Q ss_pred             hHHHHHHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515           66 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        66 a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                      +...+-.+.+    .| .++.+++|++..|...+
T Consensus       249 a~~i~~al~r----~g-~~~~lYdGS~~Ew~~~~  277 (286)
T KOG1529|consen  249 ASIIALALER----SG-PDAKLYDGSWTEWALRA  277 (286)
T ss_pred             HHHHHHHHHh----cC-CCcceecccHHHHhhcC
Confidence            4445555555    89 78999999999997643

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=96.91  E-value=0.0039  Score=46.57  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             ccCHHHHHhhhc--CC--CeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-----------------------
Q 033515            7 YISGSQLLSLKR--RP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-----------------------   59 (117)
Q Consensus         7 ~is~~e~~~~~~--~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-----------------------   59 (117)
                      .|+..|+...-+  .+  ...|||+|+.+.|..||+..|.|.+-..+.+....|...                       
T Consensus       308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHl  387 (669)
T KOG3636|consen  308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHL  387 (669)
T ss_pred             chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceE
Confidence            345555544322  22  346999999999999999999998655433211111110                       


Q ss_pred             ---ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHH
Q 033515           60 ---VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE   96 (117)
Q Consensus        60 ---~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~   96 (117)
                         .+|...-......+.+++..-+-..|..+.||+....
T Consensus       388 cfmGsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  388 CFMGSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             EEeccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence               4444323344444444555567667999999998765

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=96.80  E-value=0.00028  Score=50.50  Aligned_cols=51  Identities=6%  Similarity=-0.068  Sum_probs=41.6

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ   58 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~   58 (117)
                      .-+++++.+.+. ....++|+|....|+.+||||++++|...+..+..++..
T Consensus        15 i~~~~~~~~~l~-~~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~   65 (314)
T PRK00142         15 IEDPEAFRDEHL-ALCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA   65 (314)
T ss_pred             CCCHHHHHHHHH-HHHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh
Confidence            446778888776 356799999999999999999999999878877766644

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=96.72  E-value=0.003  Score=44.17  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=32.9

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchh
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT   50 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~   50 (117)
                      .++.+++.+.+..+++.++|+|+    ...||.+|+++-+..+.
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalm   44 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALM   44 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHH
Confidence            46788899988888899999999    57899999997665443

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=95.96  E-value=0.00081  Score=51.34  Aligned_cols=84  Identities=23%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------------ccChh--hhHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------------VRGPT--CAKRL   69 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------------~~g~~--~a~~~   69 (117)
                      .+++|++++++.+   +...++|.|...||..+|+++++|+|...-+.....+...            +.|..  -+...
T Consensus       620 ~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~K~~~e~  696 (725)
T KOG1093|consen  620 HCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGKNDKHAAER  696 (725)
T ss_pred             cCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEeccchHHHHHH
Confidence            6788898888876   5678999999999999999999999998544444433322            33332  12222


Q ss_pred             HHHHHHHHHhCCCceEEEccccHHH
Q 033515           70 ANYLDEVKEDTGINSIFVLERGFKG   94 (117)
Q Consensus        70 ~~~l~~~l~~~G~~~v~~l~gG~~~   94 (117)
                      ...+..    +-+.++-++.+|+.+
T Consensus       697 ~~~~~~----mk~p~~cil~~~~~~  717 (725)
T KOG1093|consen  697 LTELYV----MKVPRICILHDGFNN  717 (725)
T ss_pred             hhHHHH----hcccHHHHHHHHHhh
Confidence            223333    446677788888773

>COG2603 Predicted ATPase [General function prediction only]

Probab=95.45  E-value=0.0075  Score=42.70  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             HHhhhcCCCeEEEecCCCCcccCCcccccccCCccc
Q 033515           13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDS   48 (117)
Q Consensus        13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~   48 (117)
                      ...++. .+..+||||.+-||..|+.|+++|+|.-.
T Consensus         8 ~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~n   42 (334)
T COG2603           8 YRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMN   42 (334)
T ss_pred             HHHHHh-cCCceeeccchHHHhcccchhhhcccccc
Confidence            334443 56789999999999999999999999753

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=89.28  E-value=0.4  Score=34.46  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccC---Cccc
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYD---GHIT   39 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~---ghIp   39 (117)
                      ...+...++...+...+..|||+|+..+|..   |||+
T Consensus       135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~  172 (311)
T TIGR03167       135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG  172 (311)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence            3456778888888777789999999999988   8988

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
1t3k_A	152	Nmr Structure Of A Cdc25-Like Dual-Specificity Tyro		1e-45

>pdb|1T3K|A Chain A, Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine Phosphatase Of Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 15/126 (11%)
Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ-- 58
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q  
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 82
Query: 59  -------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                        +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 83  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 142
Query: 106 TDVPCK 111
            +VPCK
Sbjct: 143 AEVPCK 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	5e-38
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	3e-18
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	6e-16
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	1e-13
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	2e-13
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	4e-13
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	2e-12
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-12
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-10
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-06
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	4e-10
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	7e-09
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	2e-08
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	3e-08
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	7e-08
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	4e-07
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	2e-06
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	2e-06
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	3e-06
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	2e-05
1tq1_A	129	AT5G66040, senescence-associated family protein; C	3e-05
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	3e-05
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	3e-05
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	1e-04
1vee_A	134	Proline-rich protein family; hypothetical protein,	2e-04
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	3e-04
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	4e-04
3r2u_A	466	Metallo-beta-lactamase family protein; structural	7e-04

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score =  124 bits (312), Expect = 5e-38
 Identities = 85/129 (65%), Positives = 96/129 (74%), Gaps = 15/129 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 82

Query: 61  ---------------RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
                          RGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 83  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 142

Query: 106 TDVPCKEEN 114
            +VPCK + 
Sbjct: 143 AEVPCKGDC 151

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 74.3 bits (182), Expect = 3e-18
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 25/122 (20%)

Query: 4   SISYISGSQLLSL----KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE 59
           + +YI   +L+ L          AVID RD +R   G I  S++ P+ S T+++++ + +
Sbjct: 3   NYTYIKPEELVELLDNPDSLVKAAVIDCRDSDRD-CGFIVNSINMPTISCTEEMYEKLAK 61

Query: 60  ------------------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 101
                             VR P  A R A      K    + +++VL  G++ +      
Sbjct: 62  TLFEEKKELAVFHCAQSLVRAPKGANRFALAQK--KLGYVLPAVYVLRGGWEAFYHMYGD 119

Query: 102 VC 103
           V 
Sbjct: 120 VR 121

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 68.6 bits (167), Expect = 6e-16
 Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 35/136 (25%)

Query: 4   SISYISGSQLLSL-------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL 56
           ++ Y+  ++L            R    V+DVR  +    GHI    HY           L
Sbjct: 29  NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRGSDYM-GGHIKDGWHYAYSRLKQDPEYL 87

Query: 57  IQ-------------------------EVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 91
            +                         + RGP+ A  L   LD    +     ++VL  G
Sbjct: 88  RELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDT--AELSRCRLWVLRGG 145

Query: 92  FKGWEASGKPVCRCTD 107
           F  W++        T 
Sbjct: 146 FSRWQSVYGDDESVTA 161

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 62.4 bits (151), Expect = 1e-13
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 26/127 (20%)

Query: 3   RSISYISGSQLLSL------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL 56
           + + YIS   + S+             +ID R       GHI G+++   +   +     
Sbjct: 20  QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLK 79

Query: 57  IQEV------------------RGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGWE 96
              V                  RGP   + +        E        ++VL+ G+K + 
Sbjct: 80  KPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFF 139

Query: 97  ASGKPVC 103
              +  C
Sbjct: 140 MKCQSYC 146

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 62.4 bits (151), Expect = 2e-13
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 27/128 (21%)

Query: 3   RSISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-- 54
           + + Y++   + +L             VID R       GHI G+L+  S       F  
Sbjct: 54  QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLK 113

Query: 55  -----------------DLIQEVRGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGW 95
                                  RGP   + L      + +        +++L+ G++ +
Sbjct: 114 KPIVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDF 173

Query: 96  EASGKPVC 103
                 +C
Sbjct: 174 FPEYMELC 181

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 61.1 bits (148), Expect = 4e-13
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 27/128 (21%)

Query: 3   RSISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL 56
           + + YIS   +++L             ++D R       GHI  +++ P +   +     
Sbjct: 21  QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK 80

Query: 57  IQEV-------------------RGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGW 95
                                  RGP   + +      V +        +++L+ G+K +
Sbjct: 81  SPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF 140

Query: 96  EASGKPVC 103
                  C
Sbjct: 141 FPQHPNFC 148

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 27/128 (21%)

Query: 3   RSISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL 56
           + + YIS   +++L             ++D R       GHI  +++ P +   +     
Sbjct: 41  QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK 100

Query: 57  IQEV-------------------RGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGW 95
                                  RGP   + +      V +        +++L+ G+K +
Sbjct: 101 SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF 160

Query: 96  EASGKPVC 103
                  C
Sbjct: 161 FPQHPNFC 168

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 1   MARS-ISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI- 57
           M+ S I+  +   + + L  R  +A++DVR+++     H   + + P      +I   + 
Sbjct: 1   MSLSQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP 60

Query: 58  ---QEV----RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPC 110
                +     G   A   A  L ++    G + + +L+ G  GW  +G  + R  +VP 
Sbjct: 61  RRDTPITVYDDGEGLAPVAAQRLHDL----GYSDVALLDGGLSGWRNAGGELFRDVNVPS 116

Query: 111 KEENQ 115
           K   +
Sbjct: 117 KAFGE 121

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 54.7 bits (131), Expect = 3e-10
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
                  I  + L      P   V+D          HI G+           +  L    
Sbjct: 372 RQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAE 431

Query: 61  R------GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEEN 114
           R          A+     +    +      +F+L+ G   W A+G P      +      
Sbjct: 432 RYVLTCGSSLLARFAVAEV----QALSGKPVFLLDGGTSAWVAAGLPTEDGESLLASPRI 487

Query: 115 QQY 117
            +Y
Sbjct: 488 DRY 490

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 16  LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGP---TCA--KRLA 70
           L  R    ++D R  +      I G +  P      ++ +L  + R      CA   R  
Sbjct: 141 LDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDPRTRVIVNCAGRTRSI 200

Query: 71  NYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 104
                +      N +  L  G  GW  +G+ +  
Sbjct: 201 IGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEH 234

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 52.9 bits (127), Expect = 4e-10
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 16/96 (16%)

Query: 17  KRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLI---QEV----RGPTC--A 66
           K    I V+DVRD E +Y   HI  ++  P +   +     +   + +     GP C  A
Sbjct: 29  KGYEGIIVVDVRDAE-AYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGA 87

Query: 67  KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
            + A    ++    G   +  L  G + W      V
Sbjct: 88  TKAAAKFAQL----GFR-VKELIGGIEYWRKENGEV 118

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 48.8 bits (117), Expect = 7e-09
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 16/101 (15%)

Query: 14  LSLKRR-----PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI---QEV----R 61
           + LK R     P   ++DVRD     DGHI G++  P +   D+    +   +++     
Sbjct: 1   MVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGA 60

Query: 62  GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
           G     +  N L       G   +  L+ G   W+A G P 
Sbjct: 61  GDEQTSQAVNLL----RSAGFEHVSELKGGLAAWKAIGGPT 97

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 19  RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI---QEV----RGPTCAKRLAN 71
            P   ++DVRD     DGHI G++  P +   D+    +   +++     G     +  N
Sbjct: 15  EPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVN 74

Query: 72  YLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
            L       G   +  L+ G   W+A G P 
Sbjct: 75  LL----RSAGFEHVSELKGGLAAWKAIGGPT 101

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 29/121 (23%)

Query: 3   RSISYISGSQLLSLKRR--PNIAVIDVRD-DERSYDGHITGSLHYP----------SDSF 49
            SI  ++ +  ++L +    ++ ++D+RD  E   DG I GS                 +
Sbjct: 19  SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPY 78

Query: 50  TDKIFDLIQEV--------RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 101
              IF   ++         R    AK          +D G+  +  +E GF  W  +G P
Sbjct: 79  AKPIFQEDKKFVFYCAGGLRSALAAKTA--------QDMGLKPVAHIEGGFGAWRDAGGP 130

Query: 102 V 102
           +
Sbjct: 131 I 131

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 7   YISGSQLLS--LKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEV--- 60
           YI    +L+          V+DVR+         I G++  P+     +I +L       
Sbjct: 16  YIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYV 75

Query: 61  ---RGPTC--AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
                      K     L       G    + L    +GW+    P+
Sbjct: 76  VYDWTGGTTLGKTALLVL----LSAGFE-AYELAGALEGWKGMQLPL 117

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 41/133 (30%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQE 59
           MAR    +S     S    P +  ++V +D  +YD  HI G++            D   +
Sbjct: 1   MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIK----------LDWRTD 50

Query: 60  VRGPT-----CAKRLANYLDE--VKEDT-----------------------GINSIFVLE 89
           ++ P       A++ +  L E  +  +                        G   + +L+
Sbjct: 51  LQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLD 110

Query: 90  RGFKGWEASGKPV 102
            G K WE  G+P+
Sbjct: 111 GGRKKWELDGRPL 123

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 3   RSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRG 62
            S + +S  ++     +  + ++DVR+ +    GH+  + H P       I D+ ++  G
Sbjct: 371 ASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHDVPRD--G 428

Query: 63  PT---CAK--R---LANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
                C    R    A+ L       G+  +  +  G++ W   G PV
Sbjct: 429 SVCVYCRTGGRSAIAASLLRAH----GVGDVRNMVGGYEAWRGKGFPV 472

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 4   SISYISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRG 62
               I+ +      +     ++D+RD + S+  GH   + H  +D+    + D   +   
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQ-SFAMGHAVQAFHLTNDTLGAFMRDNDFDT-- 59

Query: 63  PT---CA-----KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 101
           P    C      K  A YL       G + ++ ++ GF+ W+     
Sbjct: 60  PVMVMCYHGNSSKGAAQYL----LQQGYDVVYSIDGGFEAWQRQFPA 102

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 43/140 (30%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQE 59
            A     ++   L +    P +A+++  +D   YD GHI G++            D   +
Sbjct: 35  YAHPERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVK----------IDWHTD 84

Query: 60  VRGPT-----CAKRLANYLDE--VKEDT-----------------------GINSIFVLE 89
           +  P        ++ A  +D   +  D                        G   + +L 
Sbjct: 85  LNDPRVRDYINGEQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLN 144

Query: 90  RGFKGWEASGKPVCRCTDVP 109
            G   W A  +      DVP
Sbjct: 145 GGRDLWLAERRET--TLDVP 162

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 23/119 (19%)

Query: 2   ARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYP----SDSFTDKIFDLI 57
           +R  S +S +    L        +DVR  E    GH  G+++ P      S   K  D +
Sbjct: 14  SRVPSSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFL 72

Query: 58  QEVRGPT---------CA-----KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
           ++V             C       +    L       G   +  +  G+  W  +G P 
Sbjct: 73  EQVSSHFGQSDNIIVGCQSGGRSIKATTDL----LHAGFTGVKDIVGGYSAWAKNGLPT 127

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 24/116 (20%)

Query: 3   RSISYISGSQLLS-LKRRPNIAVIDVRDD---ERSYDGHITGSLHYPSDSFTDKI----F 54
             +  +S       L+  P+I +IDVRD    +      +    H         +     
Sbjct: 20  ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGL 79

Query: 55  DLIQEV--------RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
           D  + V        R     K L         + G  +I+  E G   W   G P 
Sbjct: 80  DPEKPVVVFCKTAARAALAGKTL--------REYGFKTIYNSEGGMDKWLEEGLPS 127

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 41/126 (32%)

Query: 8   ISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGPT-- 64
           +S   +      P + V++V +D   YD GHI G+             D  ++   P   
Sbjct: 10  VSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQK----------IDWQRDFWDPVVR 59

Query: 65  ---CAKRLANYLDE--VKEDT-----------------------GINSIFVLERGFKGWE 96
                +  A  ++   +  DT                       G   + ++  G + W 
Sbjct: 60  DFISEEEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWV 119

Query: 97  ASGKPV 102
             G+P+
Sbjct: 120 EEGRPL 125

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 19  RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI----QEV----RGPTCAKRLA 70
             +  V+DVR+ +   + H+  +     +        L     ++V    R    A   A
Sbjct: 14  FNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAA 73

Query: 71  NYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
             +     + G    + LE     +E  G  +
Sbjct: 74  KSM----HELGYTPYY-LEGNVYDFEKYGFRM 100

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 29/126 (23%)

Query: 4   SISYISGSQLLS-LKRRPNIAVIDVRD-DERSYDG--HITGSLH---------YPSDSFT 50
           S S  S     + L    N  ++D+R   +    G  +I G                 F 
Sbjct: 3   SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFL 62

Query: 51  DKIFDLIQEVRGPT----C-----AKRLANYLDEVKEDTGINSIFVLERGF---KGWEAS 98
            K+    ++    T          ++ +A  +       G  S + ++ G    +GW  S
Sbjct: 63  KKLSLKFKDPENTTLYILDKFDGNSELVAELV----ALNGFKSAYAIKDGAEGPRGWLNS 118

Query: 99  GKPVCR 104
             P   
Sbjct: 119 SLPWIE 124

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 19/96 (19%)

Query: 17  KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE----------VRGPTCA 66
           +      V+DVR+      G I  S++ P     +K   L ++           R     
Sbjct: 13  ENIKAYTVLDVREPFELIFGSIANSINIPISELREKWKILERDKKYAVICAHGNRSAAAV 72

Query: 67  KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
           + L+          G+N I  +E G + W   G PV
Sbjct: 73  EFLSQL--------GLN-IVDVEGGIQSWIEEGYPV 99

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 25/120 (20%)

Query: 4   SISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI------FD 55
           +I   S   +  +  K  PN+ ++DVR+       HI  S++ P  S  D        F+
Sbjct: 21  NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFE 80

Query: 56  LIQEVRGPTCAKRL-------------ANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
               +  P  AK L                        G ++  +       W + G   
Sbjct: 81  KQIGIPKPDSAKELIFYCASGKRGGEAQKVASSH----GYSNTSLYPGSMNDWVSHGGDK 136

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 20  PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPT---CAK--R---LAN 71
               ++DVR+D    +GH++ ++H P     +      +         C    R      
Sbjct: 386 NESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFNKN--DVIYVHCQSGIRSSIAIG 443

Query: 72  YLDEVKEDTGINSIFVLERGFKGWEAS 98
            L    E  G ++I  +  G+K  + S
Sbjct: 444 IL----EHKGYHNIINVNEGYKDIQLS 466

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.93
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.92
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.92
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.92
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.92
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.9
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.9
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.89
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.89
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.89
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.87
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.87
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.86
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.86
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.86
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.84
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.83
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.82
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.81
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.81
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.81
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.8
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.8
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.8
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.8
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.8
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.8
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.79
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.79
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.79
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.79
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.79
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.78
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.78
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.78
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.78
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.77
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.77
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.77
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.77
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.76
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.74
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.73
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.73
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.73
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.72
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.71
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.71
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.7
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.7
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.69
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.68
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.68
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.67
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.67
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.67
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.65
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.59
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.59
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.56
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.52
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.49
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.34
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.06
2f46_A	156	Hypothetical protein; structural genomics, joint c	95.92
1v8c_A	168	MOAD related protein; riken structural genomics/pr	95.7

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.93  E-value=3.7e-26  Score=137.46  Aligned_cols=94  Identities=22%  Similarity=0.447  Sum_probs=79.8

Q ss_pred             CcccCHHHHHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         5 ~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      +..|+++|+++.+. .++++|||||++.||..||||||+|||.+.|...+.+++++      | +|.+ |..++..|.+ 
T Consensus         1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~ivv~C~~G~r-S~~aa~~L~~-   78 (103)
T 3iwh_A            1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVR-SAKVVEYLEA-   78 (103)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCGGGCCTTSEEEEECSSSSH-HHHHHHHHHT-
T ss_pred             CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhhhhhhhcCCCeEEEECCCCHH-HHHHHHHHHH-
Confidence            46799999998775 45789999999999999999999999999998877777665      4 5777 6677777766 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCccc
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCR  104 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~  104 (117)
                         .||+++ .|.||+.+|..+|+|+++
T Consensus        79 ---~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           79 ---NGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             ---TTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             ---cCCCEE-EecChHHHHHHCCCccee
Confidence               999655 699999999999999975

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.92  E-value=2.5e-26  Score=146.78  Aligned_cols=113  Identities=63%  Similarity=1.061  Sum_probs=93.0

Q ss_pred             CCCCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh----hh------c--cChhhhHHH
Q 033515            2 ARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI----QE------V--RGPTCAKRL   69 (117)
Q Consensus         2 ~~~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~----~~------~--~g~~~a~~~   69 (117)
                      ++.+..|+++++.++++.++++|||||++.||..||||||+|||...+...+.++.    +.      |  .|.+ +..+
T Consensus        24 ~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~~~~l~~~~~~~~~iVvyC~~~G~r-s~~a  102 (152)
T 1t3k_A           24 ARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVR-GPTC  102 (152)
T ss_dssp             CSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSS-HHHH
T ss_pred             cCCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHHHHHHHHhcCCCCEEEEEcCCCCcc-hHHH
Confidence            34678999999999887678999999999999999999999999998876666552    22      3  5555 5555


Q ss_pred             HHHHHH----HHHhCCCceEEEccccHHHHHhCCCCccccCCCCCchhhh
Q 033515           70 ANYLDE----VKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQ  115 (117)
Q Consensus        70 ~~~l~~----~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~~~~~~  115 (117)
                      +..|.+    +|+..||++|++|+||+.+|..+|+|+++....+|++.|.
T Consensus       103 a~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~c~~~~~  152 (152)
T 1t3k_A          103 ARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPCKGDCA  152 (152)
T ss_dssp             HHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSCSSCSSCCC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCCCCCCCCCCC
Confidence            555532    3456899999999999999999999999999999999884

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.92  E-value=2.8e-25  Score=134.49  Aligned_cols=98  Identities=22%  Similarity=0.351  Sum_probs=81.1

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEVK   77 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~l   77 (117)
                      ++.|+++++.+++++  ++|||||++.||..||||||+|||...+......+.++       .+|.+ |..++..|..  
T Consensus         3 ~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~ivvyC~~G~r-s~~aa~~L~~--   77 (108)
T 3gk5_A            3 YRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISELREKWKILERDKKYAVICAHGNR-SAAAVEFLSQ--   77 (108)
T ss_dssp             CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHHHHHGGGSCTTSCEEEECSSSHH-HHHHHHHHHT--
T ss_pred             ccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHHHHHHHhCCCCCeEEEEcCCCcH-HHHHHHHHHH--
Confidence            578999999999875  89999999999999999999999999888877777554       45666 6667776666  


Q ss_pred             HhCCCceEEEccccHHHHHhCCCCccccCCCCC
Q 033515           78 EDTGINSIFVLERGFKGWEASGKPVCRCTDVPC  110 (117)
Q Consensus        78 ~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~  110 (117)
                        +|| +|++|+||+.+|..+|.|+++....|.
T Consensus        78 --~G~-~v~~l~GG~~~W~~~~~~~~~~~~~~~  107 (108)
T 3gk5_A           78 --LGL-NIVDVEGGIQSWIEEGYPVVLEHHHHH  107 (108)
T ss_dssp             --TTC-CEEEETTHHHHHHHTTCCCBCC-----
T ss_pred             --cCC-CEEEEcCcHHHHHHcCCCCCCCCCCcC
Confidence              999 999999999999999999998877664

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.92  E-value=2.6e-25  Score=132.88  Aligned_cols=92  Identities=21%  Similarity=0.366  Sum_probs=78.8

Q ss_pred             CcccCHHHHHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         5 ~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~   76 (117)
                      ++.|+++|+.++++ +++++|||||++.||..||||||+|||.+.+......++++       .+|.+ |..++..|.. 
T Consensus         1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~ivvyC~~g~r-s~~a~~~L~~-   78 (100)
T 3foj_A            1 MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDNLNYFNDNETYYIICKAGGR-SAQVVQYLEQ-   78 (100)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCGGGSCTTSEEEEECSSSHH-HHHHHHHHHT-
T ss_pred             CCccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHHHhCCCCCcEEEEcCCCch-HHHHHHHHHH-
Confidence            36799999999884 56899999999999999999999999999988777776654       35666 6677777766 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCc
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPV  102 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~  102 (117)
                         .|| +|++|+||+.+|..+|+|+
T Consensus        79 ---~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           79 ---NGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             ---TTC-EEEEETTHHHHHCSSSCBC
T ss_pred             ---CCC-CEEEecccHHHHHHcCCCC
Confidence               999 9999999999999999885

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.90  E-value=1.1e-24  Score=131.81  Aligned_cols=97  Identities=20%  Similarity=0.360  Sum_probs=83.1

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~   76 (117)
                      .++.|+++++.+++++++.+|||||++.||..||||||+|||...+...+..+++.       .+|.+ +..++..|.. 
T Consensus         3 ~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~ivvyc~~g~r-s~~a~~~L~~-   80 (108)
T 1gmx_A            3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMCYHGNS-SKGAAQYLLQ-   80 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHHHHHSCTTSCEEEECSSSSH-HHHHHHHHHH-
T ss_pred             cccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHHHHHhcCCCCCEEEEcCCCch-HHHHHHHHHH-
Confidence            35789999999998866799999999999999999999999999888877776554       35666 6677777777 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                         .||++|++|+||+.+|... +|++.+.
T Consensus        81 ---~G~~~v~~l~GG~~~W~~~-~p~~~~~  106 (108)
T 1gmx_A           81 ---QGYDVVYSIDGGFEAWQRQ-FPAEVAY  106 (108)
T ss_dssp             ---HTCSSEEEETTHHHHHHHH-CGGGEEC
T ss_pred             ---cCCceEEEecCCHHHHHHh-CCccccc
Confidence               9999999999999999998 9988654

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.90  E-value=2.3e-24  Score=130.04  Aligned_cols=95  Identities=25%  Similarity=0.408  Sum_probs=70.8

Q ss_pred             HHHHhhhc--CCCeEEEecCCCCcccCCcccccccCCccchhHHH-HHHhhh------c-cChhhhHHHHHHHHHHHHhC
Q 033515           11 SQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI-FDLIQE------V-RGPTCAKRLANYLDEVKEDT   80 (117)
Q Consensus        11 ~e~~~~~~--~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~-~~~~~~------~-~g~~~a~~~~~~l~~~l~~~   80 (117)
                      +||+++++  +++++|||||++.||..||||||+|||...+.... ..+.+.      | .|.+ +..++..|..    .
T Consensus         1 eel~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~l~~~~~ivvyc~~g~r-s~~a~~~L~~----~   75 (106)
T 3hix_A            1 MVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQ-TSQAVNLLRS----A   75 (106)
T ss_dssp             ------------CCEEEECSCHHHHHTCEETTCEECCGGGHHHHHHHHSCTTSCEEEECSSHHH-HHHHHHHHHH----T
T ss_pred             ChHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHHHHhcCCCCCeEEEEECCCCh-HHHHHHHHHH----c
Confidence            36777776  34689999999999999999999999999887755 444443      4 4555 6667777766    9


Q ss_pred             CCceEEEccccHHHHHhCCCCccccCCCCC
Q 033515           81 GINSIFVLERGFKGWEASGKPVCRCTDVPC  110 (117)
Q Consensus        81 G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~  110 (117)
                      ||++|++|+||+.+|..+|+|+++....|.
T Consensus        76 G~~~v~~l~GG~~~W~~~g~~~~~~~~~~~  105 (106)
T 3hix_A           76 GFEHVSELKGGLAAWKAIGGPTELEHHHHH  105 (106)
T ss_dssp             TCSCEEECTTHHHHHHHTTCCEEECCEEEC
T ss_pred             CCcCEEEecCCHHHHHHCCCCCCCCCCCCC
Confidence            999999999999999999999998776554

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.89  E-value=5.6e-24  Score=134.37  Aligned_cols=96  Identities=25%  Similarity=0.437  Sum_probs=78.8

Q ss_pred             ccCHHHHHhhhc--CCCeEEEecCCCCcccCCcccccccCCccchhHHH-HHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            7 YISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI-FDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         7 ~is~~e~~~~~~--~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~-~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      .|+++++.++++  .++++|||||++.||..||||||+|||...+.... ..+.+.      | .|.+ |..++..|.. 
T Consensus         1 mIs~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~l~~~~~ivvyC~~g~r-s~~aa~~L~~-   78 (141)
T 3ilm_A            1 MSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQ-TSQAVNLLRS-   78 (141)
T ss_dssp             -CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHHHHTTSCTTSEEEEECSSHHH-HHHHHHHHHH-
T ss_pred             CCCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHHHHhcCCCCCeEEEEECCChH-HHHHHHHHHH-
Confidence            389999999987  34689999999999999999999999999887765 344443      4 4555 6667777766 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                         .||++|++|+||+.+|..+|+|+++...
T Consensus        79 ---~G~~~v~~l~GG~~~W~~~g~p~~~~~~  106 (141)
T 3ilm_A           79 ---AGFEHVSELKGGLAAWKAIGGPTEGIIE  106 (141)
T ss_dssp             ---TTCCSEEECTTHHHHHHHTTCCEEEEC-
T ss_pred             ---cCCCCEEEecCHHHHHHHCCCCcccCCC
Confidence               9999999999999999999999998764

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.89  E-value=1.3e-23  Score=131.98  Aligned_cols=99  Identities=20%  Similarity=0.392  Sum_probs=79.3

Q ss_pred             CCcccCHHHHHhhhc--CCCeEEEecCCCCcccC-CcccccccCCccchhHHHH--------HHhhh-------ccChhh
Q 033515            4 SISYISGSQLLSLKR--RPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIF--------DLIQE-------VRGPTC   65 (117)
Q Consensus         4 ~~~~is~~e~~~~~~--~~~~~iiDvR~~~e~~~-ghIpga~~ip~~~l~~~~~--------~~~~~-------~~g~~~   65 (117)
                      .+..|+++++.++++  +++++|||||++.||.. ||||||+|||...+.....        .+.+.       ..|.+ 
T Consensus        20 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~ivvyC~~G~r-   98 (139)
T 2hhg_A           20 SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPYAKPIFQEDKKFVFYCAGGLR-   98 (139)
T ss_dssp             TSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTTSTTCCGGGGSSSEEEEECSSSHH-
T ss_pred             hcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCccchhhhccCCCCCeEEEECCCChH-
Confidence            467899999999987  56899999999999998 9999999999988765442        22332       45666 


Q ss_pred             hHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           66 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        66 a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                      |..++..|..    .||++|++|+||+.+|..+|+|++++..
T Consensus        99 s~~a~~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~  136 (139)
T 2hhg_A           99 SALAAKTAQD----MGLKPVAHIEGGFGAWRDAGGPIEAWAP  136 (139)
T ss_dssp             HHHHHHHHHH----HTCCSEEEETTHHHHHHHTTCCCC----
T ss_pred             HHHHHHHHHH----cCCCCeEEecCCHHHHHHCCCCeecCCC
Confidence            6666777766    9999999999999999999999987643

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.89  E-value=1.8e-23  Score=131.44  Aligned_cols=99  Identities=23%  Similarity=0.354  Sum_probs=83.5

Q ss_pred             CCcccCHHHHHhhhc-CCCeEEEecCCCCcccC-Cc--ccccccCCccchhH--HHHHHhhh-------ccChhhhHHHH
Q 033515            4 SISYISGSQLLSLKR-RPNIAVIDVRDDERSYD-GH--ITGSLHYPSDSFTD--KIFDLIQE-------VRGPTCAKRLA   70 (117)
Q Consensus         4 ~~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~-gh--Ipga~~ip~~~l~~--~~~~~~~~-------~~g~~~a~~~~   70 (117)
                      .+..|+++++.++++ .++++|||||++.||.. ||  ||||+|||...+..  .+..+.+.       .+|.+ |..++
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~~~~~~l~~~~~ivvyC~~G~r-S~~aa   99 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDPEKPVVVFCKTAAR-AALAG   99 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHHHHHCCCTTSCEEEECCSSSC-HHHHH
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhHHhhccCCCCCeEEEEcCCCcH-HHHHH
Confidence            567899999999987 67799999999999999 99  99999999998875  44444443       45666 66777


Q ss_pred             HHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           71 NYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                      ..|..    .||++|++|+||+.+|..+|+|++++..
T Consensus       100 ~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~  132 (137)
T 1qxn_A          100 KTLRE----YGFKTIYNSEGGMDKWLEEGLPSLDRSH  132 (137)
T ss_dssp             HHHHH----HTCSCEEEESSCHHHHHHTTCCEECCCC
T ss_pred             HHHHH----cCCcceEEEcCcHHHHHHCCCCcccccc
Confidence            77777    9999999999999999999999987643

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.87  E-value=1.4e-22  Score=125.24  Aligned_cols=96  Identities=22%  Similarity=0.366  Sum_probs=78.9

Q ss_pred             cccCHHHHHhhhcCC--CeEEEecCCCCcc-cCCcccccccCCccchhHHHHHHhhh------c-cChhh-hHHHHHHHH
Q 033515            6 SYISGSQLLSLKRRP--NIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTC-AKRLANYLD   74 (117)
Q Consensus         6 ~~is~~e~~~~~~~~--~~~iiDvR~~~e~-~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~-a~~~~~~l~   74 (117)
                      ..|+++|+.++++.+  +++|||||++.|| ..||||||+|||...+...+..++++      | .|.+. |..++..|.
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~   94 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLL   94 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHH
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHH
Confidence            469999999988743  4999999999998 99999999999999988877777654      4 45542 566777777


Q ss_pred             HHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           75 EVKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        75 ~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                      +    .||+ |++|+||+.+|...|+|+.+..
T Consensus        95 ~----~G~~-v~~l~GG~~~W~~~~~p~~~~~  121 (124)
T 3flh_A           95 S----AGFE-AYELAGALEGWKGMQLPLEHHH  121 (124)
T ss_dssp             H----HTCE-EEEETTHHHHHHHTTCCEEC--
T ss_pred             H----cCCe-EEEeCCcHHHHHHcCCCCCccc
Confidence            6    9996 9999999999999999987654

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.87  E-value=9e-23  Score=129.21  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             cccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH-HHHHHhhh------c-cC--hhhhHHHHHHH
Q 033515            6 SYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQE------V-RG--PTCAKRLANYL   73 (117)
Q Consensus         6 ~~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-~~~~~~~~------~-~g--~~~a~~~~~~l   73 (117)
                      ..|+++|+.++++++  +++|||||++.||..||||||+|||...+.. ....+.++      | .|  .+ |..++..|
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~~l~~~~~ivvyC~~g~~~r-s~~aa~~L   94 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNG-ATKAAAKF   94 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTTTTTTCCTTSEEEEECSCTTCCH-HHHHHHHH
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHHHHhhCCCCCeEEEEECCCCccH-HHHHHHHH
Confidence            458999999988754  7999999999999999999999999998763 45555444      4 34  35 66777777


Q ss_pred             HHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515           74 DEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  109 (117)
Q Consensus        74 ~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~  109 (117)
                      ..    +|| +|++|+||+.+|..+|+|+++....+
T Consensus        95 ~~----~G~-~v~~l~GG~~~W~~~g~pv~~~~~~~  125 (144)
T 3nhv_A           95 AQ----LGF-RVKELIGGIEYWRKENGEVEGTLGAK  125 (144)
T ss_dssp             HH----TTC-EEEEEESHHHHHHHTTCCCBSSSGGG
T ss_pred             HH----CCC-eEEEeCCcHHHHHHCCCCccCCCCCC
Confidence            77    999 69999999999999999999875433

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.6e-22  Score=127.05  Aligned_cols=96  Identities=18%  Similarity=0.270  Sum_probs=77.2

Q ss_pred             CCcccCHHHHHhhhc--CCCeEEEecCCCCcccCCcccccccCCccchhHHHH----HH---------hhh------c-c
Q 033515            4 SISYISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF----DL---------IQE------V-R   61 (117)
Q Consensus         4 ~~~~is~~e~~~~~~--~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~----~~---------~~~------~-~   61 (117)
                      .+..|+++++.++++  .++++|||||++.||..||||||+|||...+.....    ++         .+.      | +
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~  100 (139)
T 3d1p_A           21 NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCAS  100 (139)
T ss_dssp             CCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSS
T ss_pred             CcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCC
Confidence            578899999999986  367999999999999999999999999987753221    11         122      3 4


Q ss_pred             ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccc
Q 033515           62 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  104 (117)
Q Consensus        62 g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~  104 (117)
                      |.+ |..++..|..    .||++|++|+||+.+|...|+|+..
T Consensus       101 G~r-s~~aa~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A          101 GKR-GGEAQKVASS----HGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SHH-HHHHHHHHHT----TTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             Cch-HHHHHHHHHH----cCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            666 6666776666    9999999999999999999998754

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.86  E-value=4.9e-23  Score=128.13  Aligned_cols=94  Identities=21%  Similarity=0.284  Sum_probs=75.2

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCcc-----------ch-hHHHHHHhhh-------ccChh
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSD-----------SF-TDKIFDLIQE-------VRGPT   64 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~-----------~l-~~~~~~~~~~-------~~g~~   64 (117)
                      ....|+++++.++++ ++++|||||++.||..||||||+|||..           .+ ......+.+.       .+|.+
T Consensus        16 ~~~~is~~e~~~~l~-~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~r   94 (129)
T 1tq1_A           16 VPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR   94 (129)
T ss_dssp             CCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSH
T ss_pred             CCcccCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCcH
Confidence            568899999999887 5789999999999999999999999983           22 1212223332       35666


Q ss_pred             hhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515           65 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        65 ~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~  103 (117)
                       |..++..|..    .||++|++|+||+.+|..+|+|++
T Consensus        95 -s~~aa~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~  128 (129)
T 1tq1_A           95 -SIKATTDLLH----AGFTGVKDIVGGYSAWAKNGLPTK  128 (129)
T ss_dssp             -HHHHHHHHHH----HHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             -HHHHHHHHHH----cCCCCeEEeCCcHHHHHhCCCCCC
Confidence             6677777777    999999999999999999999875

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.86  E-value=8e-23  Score=120.71  Aligned_cols=88  Identities=19%  Similarity=0.270  Sum_probs=66.5

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh-hh-----ccChhhhHHHHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI-QE-----VRGPTCAKRLANYLDEVKE   78 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~-~~-----~~g~~~a~~~~~~l~~~l~   78 (117)
                      ++.|+++++.+++++ +++|||||++.||..||||||+|||...+...+..++ +.     .+|.+ |..++..|..   
T Consensus         1 ~~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~~~~l~~~~ivvyC~~g~r-s~~a~~~L~~---   75 (94)
T 1wv9_A            1 MRKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGLPRRPLLLVCEKGLL-SQVAALYLEA---   75 (94)
T ss_dssp             -CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTTTCCCCCSSCEEEECSSSHH-HHHHHHHHHH---
T ss_pred             CCcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHHHHHhCCCCCEEEEcCCCCh-HHHHHHHHHH---
Confidence            357899999998875 7899999999999999999999999988765443332 22     45666 6677777777   


Q ss_pred             hCCCceEEEccccHHHHHhCC
Q 033515           79 DTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        79 ~~G~~~v~~l~gG~~~W~~~g   99 (117)
                       .||+ |++|+||+.+|..+|
T Consensus        76 -~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           76 -EGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             -HTCC-EEEETTGGGCC----
T ss_pred             -cCCc-EEEEcccHHHHHhCc
Confidence             9998 999999999998764

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.84  E-value=5.7e-21  Score=121.84  Aligned_cols=100  Identities=26%  Similarity=0.330  Sum_probs=75.3

Q ss_pred             CCcccCHHHHHhhhcCC----CeEEEecCCCCcccCCcccccccCCccchhH-HHHHHh-----hh-------c--cChh
Q 033515            4 SISYISGSQLLSLKRRP----NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLI-----QE-------V--RGPT   64 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~----~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-~~~~~~-----~~-------~--~g~~   64 (117)
                      .+..|+++++.++++.+    +++|||||++ ||..||||||+|||...+.. .++++.     ..       |  +|.+
T Consensus         3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~~~~l~~~l~~~~~~~vV~yC~~sg~r   81 (152)
T 2j6p_A            3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEMYEKLAKTLFEEKKELAVFHCAQSLVR   81 (152)
T ss_dssp             CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHHHHHHHHHHHHTTCCEEEEECSSSSSH
T ss_pred             CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHHHHHHHHHhcccCCCEEEEEcCCCCCc
Confidence            45789999999998753    7999999999 99999999999999987653 333332     11       5  3556


Q ss_pred             hhHHHHHHHHHHHHhCCC--ceEEEccccHHHHHhCCCCcccc
Q 033515           65 CAKRLANYLDEVKEDTGI--NSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        65 ~a~~~~~~l~~~l~~~G~--~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                       +..++..+.+.|+..||  .+|++|+||+.+|..++.++...
T Consensus        82 -s~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~~~  123 (152)
T 2j6p_A           82 -APKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVRPD  123 (152)
T ss_dssp             -HHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTCGG
T ss_pred             -cHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCCCC
Confidence             54555333334556997  58999999999999998877643

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.83  E-value=4.2e-22  Score=120.82  Aligned_cols=90  Identities=18%  Similarity=0.150  Sum_probs=72.7

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHH--Hhhh-------ccChhhhHHHHHHHHHHH
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD--LIQE-------VRGPTCAKRLANYLDEVK   77 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~--~~~~-------~~g~~~a~~~~~~l~~~l   77 (117)
                      .|+++++    ..++++|||||++.||..||||||+|||...+......  +.+.       ..|.+ |..++..|..  
T Consensus         6 ~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~ivvyC~~G~r-s~~aa~~L~~--   78 (110)
T 2k0z_A            6 AISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRR-ALDAAKSMHE--   78 (110)
T ss_dssp             EEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHHHHHHSCSSSCEEEECSSSHH-HHHHHHHHHH--
T ss_pred             eeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHHHhcccCCCCEEEEEeCCCch-HHHHHHHHHH--
Confidence            5666665    23578999999999999999999999999998876654  3333       45666 6677777777  


Q ss_pred             HhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           78 EDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        78 ~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                        .||++ ++|+||+.+|..+|+|++++.
T Consensus        79 --~G~~~-~~l~GG~~~W~~~g~p~~~~~  104 (110)
T 2k0z_A           79 --LGYTP-YYLEGNVYDFEKYGFRMVYDD  104 (110)
T ss_dssp             --TTCCC-EEEESCGGGTTTTTCCCBCCC
T ss_pred             --CCCCE-EEecCCHHHHHHCCCcEecCC
Confidence              99999 999999999999999998754

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.82  E-value=3.9e-20  Score=130.27  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=77.5

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCc-ccCCcccccccCCcc---------------chhHHHHHH--hhh------c
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDER-SYDGHITGSLHYPSD---------------SFTDKIFDL--IQE------V   60 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e-~~~ghIpga~~ip~~---------------~l~~~~~~~--~~~------~   60 (117)
                      ...|+++++.+++++++++|||||++.| |..||||||+|||..               .|...+..+  .++      |
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            4579999999999877899999999976 999999999999974               344444443  222      3


Q ss_pred             -cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           61 -RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        61 -~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                       .|...+..+++.|+.    +||++|++|+||+.+|..+|+|+++...
T Consensus       119 ~~g~~~a~~a~~~L~~----~G~~~V~~L~GG~~~W~~~g~p~~~~~~  162 (318)
T 3hzu_A          119 DKSNWWAAYALWVFTL----FGHADVRLLNGGRDLWLAERRETTLDVP  162 (318)
T ss_dssp             SGGGHHHHHHHHHHHH----TTCSCEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             CCCCccHHHHHHHHHH----cCCCceEEccCCHHHHhhcCCCcccCCC
Confidence             344225566666666    9999999999999999999999988643

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.81  E-value=3.5e-20  Score=127.50  Aligned_cols=100  Identities=23%  Similarity=0.306  Sum_probs=79.6

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhH-----------------HHHHH--hhh------
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----------------KIFDL--IQE------   59 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-----------------~~~~~--~~~------   59 (117)
                      .+.|+++++.+++++++++|||||++.||..||||||+|||...+..                 ++..+  .+.      
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvy   87 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVY   87 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            45899999999997678999999999999999999999999876532                 23332  222      


Q ss_pred             c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           60 V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        60 ~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                      | .|...+..++..|..    +||++|++|+||+.+|..+|+|+++....
T Consensus        88 c~~g~~~s~~a~~~L~~----~G~~~v~~L~GG~~~w~~~g~p~~~~~~~  133 (271)
T 1e0c_A           88 DDEGGGWAGRFIWLLDV----IGQQRYHYLNGGLTAWLAEDRPLSRELPA  133 (271)
T ss_dssp             CSSSSHHHHHHHHHHHH----TTCCCEEEETTHHHHHHHTTCCCBCCCCC
T ss_pred             cCCCCccHHHHHHHHHH----cCCCCeEEecCCHHHHHHcCCCccCCCCC
Confidence            3 354226666776766    99999999999999999999999876554

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.81  E-value=6.9e-21  Score=117.54  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=70.8

Q ss_pred             cccCHHHHHhhhcCC-CeEEEecCCCCcccCCcccccccCCccchhHHHHH--------H----hh-------h----c-
Q 033515            6 SYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD--------L----IQ-------E----V-   60 (117)
Q Consensus         6 ~~is~~e~~~~~~~~-~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~--------~----~~-------~----~-   60 (117)
                      ..|+++|+.++++.+ +++|||||++.||..||||||+|||...+......        +    .+       .    | 
T Consensus         1 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~   80 (127)
T 3i2v_A            1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVICK   80 (127)
T ss_dssp             CEECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHHHHHHHHHHHHHTTC---CCEEEEEECS
T ss_pred             CCCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhHHHHHHHHhhhcccccCCCCCeEEEEcC
Confidence            368999999998744 58999999999999999999999999876542211        1    11       2    3 


Q ss_pred             cChhhhHHHHHHHHHH--HHhCCCceEEEccccHHHHHhCCCC
Q 033515           61 RGPTCAKRLANYLDEV--KEDTGINSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        61 ~g~~~a~~~~~~l~~~--l~~~G~~~v~~l~gG~~~W~~~g~~  101 (117)
                      .|.+ +..++..|...  +...||.+|++|+||+.+|..+..|
T Consensus        81 ~G~r-s~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~  122 (127)
T 3i2v_A           81 LGND-SQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDG  122 (127)
T ss_dssp             SSSH-HHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCT
T ss_pred             CCCc-HHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCC
Confidence            5666 66667777660  0112788999999999999987654

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.81  E-value=3.9e-20  Score=114.90  Aligned_cols=86  Identities=21%  Similarity=0.362  Sum_probs=66.0

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchh---------------------------------
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT---------------------------------   50 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~---------------------------------   50 (117)
                      .+..|+++++.+   .++++|||||++.||..||||||+|||...+.                                 
T Consensus         3 ~~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (134)
T 3g5j_A            3 AMSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIY   79 (134)
T ss_dssp             --CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHH
T ss_pred             CccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHH
Confidence            567899999887   46899999999999999999999999996432                                 


Q ss_pred             HHHHHHhh--h-----c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC
Q 033515           51 DKIFDLIQ--E-----V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS   98 (117)
Q Consensus        51 ~~~~~~~~--~-----~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~   98 (117)
                      ..+..+.+  .     |  .|.+ |..++..|..    +|| +|++|+||+.+|.+.
T Consensus        80 ~~~~~~~~~~~~ivvyC~~~G~r-s~~a~~~L~~----~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           80 LQAAELALNYDNIVIYCARGGMR-SGSIVNLLSS----LGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHHHHTTCSEEEEECSSSSHH-HHHHHHHHHH----TTC-CCEEETTHHHHHHHH
T ss_pred             HHHHHhccCCCeEEEEECCCChH-HHHHHHHHHH----cCC-ceEEEeCcHHHHHHH
Confidence            12223322  1     5  3556 6667777776    999 999999999999764

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.80  E-value=5.7e-20  Score=127.26  Aligned_cols=101  Identities=17%  Similarity=0.242  Sum_probs=77.8

Q ss_pred             CCCcccCHHHHHhhhcCCCeEEEecC-CCCcccCCcccccccCCccc---------------hhHHHHHH--hhh-----
Q 033515            3 RSISYISGSQLLSLKRRPNIAVIDVR-DDERSYDGHITGSLHYPSDS---------------FTDKIFDL--IQE-----   59 (117)
Q Consensus         3 ~~~~~is~~e~~~~~~~~~~~iiDvR-~~~e~~~ghIpga~~ip~~~---------------l~~~~~~~--~~~-----   59 (117)
                      .....|+++++.+++++++++||||| ++.||..||||||+|||...               |...+..+  .++     
T Consensus         5 ~~~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivv   84 (285)
T 1uar_A            5 HPEVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL   84 (285)
T ss_dssp             CGGGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence            34468999999999987789999999 68999999999999999873               33344443  222     


Q ss_pred             -c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           60 -V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        60 -~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                       | .|.+.+..++..|..    +||++|++|+||+.+|..+|+|+++...
T Consensus        85 yc~~g~~~s~~a~~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~  130 (285)
T 1uar_A           85 YGDKNNWWAAYAFWFFKY----NGHKDVRLMNGGRQKWVEEGRPLTTEVP  130 (285)
T ss_dssp             ECHHHHHHHHHHHHHHHH----TTCSCEEEETTHHHHHHHHTCCCBCCCC
T ss_pred             ECCCCCccHHHHHHHHHH----cCCCCeEEecCCHHHHHHCCCcccCCCC
Confidence             3 333225555665655    9999999999999999999999987544

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.80  E-value=2.6e-20  Score=119.52  Aligned_cols=103  Identities=18%  Similarity=0.330  Sum_probs=79.7

Q ss_pred             CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHHH-H---HH-hhh--------c--cC
Q 033515            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI-F---DL-IQE--------V--RG   62 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~-~---~~-~~~--------~--~g   62 (117)
                      .++.|+++++.++++.      ++++|||||++.||..||||||+|||...+.... .   .+ .+.        |  +|
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~ivvv~yC~~sg  100 (161)
T 1c25_A           21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSS  100 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTTSCCCCCTTSEEEEEEECSSSS
T ss_pred             CcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHHhhhhhccCCCCCeEEEEEcCCCC
Confidence            5788999999999875      3789999999999999999999999998765432 2   12 112        3  46


Q ss_pred             hhhhHHHHHHHHHH------HHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           63 PTCAKRLANYLDEV------KEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        63 ~~~a~~~~~~l~~~------l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                      .+ +..++..|...      |..+||++|++|+||+.+|..++.|+..+..
T Consensus       101 ~r-s~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~~~~  150 (161)
T 1c25_A          101 ER-GPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPS  150 (161)
T ss_dssp             SH-HHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEESSC
T ss_pred             cc-hHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccCCCC
Confidence            66 55666666541      3346999999999999999999998887643

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.80  E-value=7.5e-20  Score=118.86  Aligned_cols=102  Identities=16%  Similarity=0.327  Sum_probs=78.5

Q ss_pred             CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHH-HHH---Hh--hh--------c--c
Q 033515            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-IFD---LI--QE--------V--R   61 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~-~~~---~~--~~--------~--~   61 (117)
                      .++.|+++++.++++.      ++++|||||++.||..||||||+|||...+... ...   ++  +.        |  +
T Consensus        22 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~ivvv~yC~~~  101 (175)
T 2a2k_A           22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHSEFS  101 (175)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHSSCCCC----CEEEEEEECSSS
T ss_pred             CCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHhhhhhhhccccCCCCeEEEEECCCC
Confidence            5788999999999875      368999999999999999999999999876543 221   22  22        2  4


Q ss_pred             ChhhhHHHHHHHHH------HHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           62 GPTCAKRLANYLDE------VKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        62 g~~~a~~~~~~l~~------~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                      |.+ +..++..|.+      .|..+||++|++|+||+.+|..++.++..+.
T Consensus       102 g~r-s~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~~~  151 (175)
T 2a2k_A          102 SER-GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  151 (175)
T ss_dssp             SSH-HHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             CCc-cHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccCCC
Confidence            666 5566666654      2345799999999999999999998886653

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.80  E-value=1.4e-19  Score=125.06  Aligned_cols=99  Identities=20%  Similarity=0.333  Sum_probs=78.1

Q ss_pred             cccCHHHHHhhhcCCCeEEEecC----------CCCcccCCcccccccCCccchh-----------------HHHHHH--
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVR----------DDERSYDGHITGSLHYPSDSFT-----------------DKIFDL--   56 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR----------~~~e~~~ghIpga~~ip~~~l~-----------------~~~~~~--   56 (117)
                      ..|+++++.+++++++++|||||          ++.||..||||||+|||...+.                 ..+..+  
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi   83 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   83 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            57999999999987789999999          6678999999999999987542                 223332  


Q ss_pred             hhh------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           57 IQE------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        57 ~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                      .+.      | .|.+.+..++..|..    +||++|++|+||+.+|..+|+|++++...
T Consensus        84 ~~~~~ivvyc~~g~~~a~~a~~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~  138 (280)
T 1urh_A           84 NQDKHLIVYDEGNLFSAPRAWWMLRT----FGVEKVSILGGGLAGWQRDDLLLEEGAVE  138 (280)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHH----TTCSCEEEETTHHHHHHHTTCCCBBSCCC
T ss_pred             CCCCeEEEECCCCCccHHHHHHHHHH----cCCCCEEEecCCHHHHHHCCCcccCCCCC
Confidence            122      3 455535666777766    99999999999999999999999987553

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.80  E-value=8.5e-20  Score=125.95  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=77.3

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCC-CCcccCCcccccccCCccc---------------hhHHHHHH--hhh------c
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRD-DERSYDGHITGSLHYPSDS---------------FTDKIFDL--IQE------V   60 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~-~~e~~~ghIpga~~ip~~~---------------l~~~~~~~--~~~------~   60 (117)
                      ...|+++++.+++++++++|||||+ +.||..||||||+|||...               |...+..+  .+.      |
T Consensus         5 ~~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc   84 (277)
T 3aay_A            5 DVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYG   84 (277)
T ss_dssp             HHEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEEC
T ss_pred             CceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            3579999999998877899999998 8999999999999999864               33334442  222      3


Q ss_pred             c-ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           61 R-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        61 ~-g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                      . |...+..++..|..    +||++|++|+||+.+|..+|+|+++...
T Consensus        85 ~~g~~~s~~a~~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~  128 (277)
T 3aay_A           85 GNNNWFAAYAYWYFKL----YGHEKVKLLDGGRKKWELDGRPLSSDPV  128 (277)
T ss_dssp             SGGGHHHHHHHHHHHH----TTCCSEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             CCCCchHHHHHHHHHH----cCCCcEEEecCCHHHHHHcCCccccCCC
Confidence            3 33335566666666    9999999999999999999999987654

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.80  E-value=6.8e-20  Score=136.72  Aligned_cols=103  Identities=19%  Similarity=0.297  Sum_probs=83.9

Q ss_pred             CCC-CCcccCHHHHHhhhcC-CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhh--h------c-cChhhhHHH
Q 033515            1 MAR-SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--E------V-RGPTCAKRL   69 (117)
Q Consensus         1 ~~~-~~~~is~~e~~~~~~~-~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~--~------~-~g~~~a~~~   69 (117)
                      |.. .++.|+++++.+++++ ++++|||||++.||..||||||+|||.+.+..++..+..  +      | .|.+ +..+
T Consensus         1 m~~~~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~~~~l~~~~~~~iVvyc~~g~~-s~~a   79 (539)
T 1yt8_A            1 MSLSQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTPITVYDDGEGL-APVA   79 (539)
T ss_dssp             -----CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHSCCTTSCEEEECSSSSH-HHHH
T ss_pred             CCCCcCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHHHHHhhCCCCCCeEEEEECCCCh-HHHH
Confidence            444 6789999999998873 479999999999999999999999999998887776632  2      4 4455 6677


Q ss_pred             HHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           70 ANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        70 ~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                      ++.|..    +||++|++|+||+.+|..+|+|++++...
T Consensus        80 ~~~L~~----~G~~~V~~L~GG~~~W~~~g~p~~~~~~~  114 (539)
T 1yt8_A           80 AQRLHD----LGYSDVALLDGGLSGWRNAGGELFRDVNV  114 (539)
T ss_dssp             HHHHHH----TTCSSEEEETTHHHHHHHTTCCCBCSSSH
T ss_pred             HHHHHH----cCCCceEEeCCCHHHHHhcCCCcccCCcC
Confidence            777777    99999999999999999999999876543

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.79  E-value=3e-20  Score=120.42  Aligned_cols=99  Identities=19%  Similarity=0.321  Sum_probs=73.8

Q ss_pred             CCcccCHHHHHhhhcCC-------CeEEEecCCCCcccCCcccccccCCccchhHH---HHHHhh-------------h-
Q 033515            4 SISYISGSQLLSLKRRP-------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---IFDLIQ-------------E-   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~-------~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~---~~~~~~-------------~-   59 (117)
                      .++.|+++++.++++..       +++|||||+ .||..||||||+|||...+...   +.++.+             . 
T Consensus        29 ~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~I  107 (169)
T 3f4a_A           29 NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNV  107 (169)
T ss_dssp             SEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcccccHHHHHHHHHhhcccccCCCeE
Confidence            46789999999998742       489999999 8999999999999999877543   333321             2 


Q ss_pred             ---c-cC-hhhhHHHHHHHHHHHHhCC--CceEEEccccHHHHHhCCCCccc
Q 033515           60 ---V-RG-PTCAKRLANYLDEVKEDTG--INSIFVLERGFKGWEASGKPVCR  104 (117)
Q Consensus        60 ---~-~g-~~~a~~~~~~l~~~l~~~G--~~~v~~l~gG~~~W~~~g~~~~~  104 (117)
                         | .| .+ +..++..|.+.|...|  +.+|++|+||+.+|..++.+.+.
T Consensus       108 VvyC~sG~~R-s~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~~  158 (169)
T 3f4a_A          108 IFHCMLSQQR-GPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDES  158 (169)
T ss_dssp             EEECSSSSSH-HHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCTT
T ss_pred             EEEeCCCCCc-HHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCccc
Confidence               4 34 45 5555555554344456  57999999999999998876554

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.79  E-value=1.5e-19  Score=134.81  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=86.3

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~   76 (117)
                      .+..++++++.++++.++.+|||||++.||..||||||+|+|...|...+..+.+.       .+|.+ |..++..|.. 
T Consensus       375 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~l~~l~~~~~ivv~C~sG~r-s~~aa~~L~~-  452 (539)
T 1yt8_A          375 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVLTCGSSLL-ARFAVAEVQA-  452 (539)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHHHHHCCCSEEEEECSSSHH-HHHHHHHHHH-
T ss_pred             cCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHHHHhCCCCCeEEEEeCCChH-HHHHHHHHHH-
Confidence            45789999999999877899999999999999999999999999998877776554       45666 6667777777 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                         +||++|++|+||+.+|..+|+|++++...
T Consensus       453 ---~G~~~v~~l~GG~~~W~~~g~pv~~~~~~  481 (539)
T 1yt8_A          453 ---LSGKPVFLLDGGTSAWVAAGLPTEDGESL  481 (539)
T ss_dssp             ---HHCSCEEEETTHHHHHHHTTCCCBCSSCC
T ss_pred             ---cCCCCEEEeCCcHHHHHhCCCCcccCCCC
Confidence               99999999999999999999999987543

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.79  E-value=1.6e-19  Score=120.69  Aligned_cols=102  Identities=16%  Similarity=0.316  Sum_probs=78.9

Q ss_pred             CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchhHH-HH---HHh--hh--------c--c
Q 033515            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-IF---DLI--QE--------V--R   61 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~-~~---~~~--~~--------~--~   61 (117)
                      .++.|+++++.++++.      ++++|||||++.||..||||||+|||...+... ..   .++  +.        |  +
T Consensus        42 ~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~~~~~~~l~~~~d~~ivvVvyC~~s  121 (211)
T 1qb0_A           42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFS  121 (211)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTTTCCCSSTTSEEEEEEECSSS
T ss_pred             CCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHhhhhhhhccccCCCCeEEEEECCCC
Confidence            6788999999999875      378999999999999999999999999876542 32   222  12        3  4


Q ss_pred             ChhhhHHHHHHHHH------HHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           62 GPTCAKRLANYLDE------VKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        62 g~~~a~~~~~~l~~------~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                      |.+ +..++..|..      .|..+||++|++|+||+.+|..++.++..+.
T Consensus       122 G~r-s~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~~~  171 (211)
T 1qb0_A          122 SER-GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  171 (211)
T ss_dssp             SSH-HHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             Ccc-HHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccCCC
Confidence            666 5556666653      1334799999999999999999999887653

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.79  E-value=6.3e-20  Score=116.40  Aligned_cols=97  Identities=23%  Similarity=0.306  Sum_probs=74.5

Q ss_pred             CcccCHHHHHhhhc-CCCeEEEecCCCCcccC-Ccc------cccccCCccc--------hhHHHHH-H-----hhh---
Q 033515            5 ISYISGSQLLSLKR-RPNIAVIDVRDDERSYD-GHI------TGSLHYPSDS--------FTDKIFD-L-----IQE---   59 (117)
Q Consensus         5 ~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~-ghI------pga~~ip~~~--------l~~~~~~-~-----~~~---   59 (117)
                      +..|+++++.++++ +++++|||||++.||.. |||      |||+|||...        +...+.. +     .++   
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i   83 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERPV   83 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBCTTSCBCTTHHHHHHHHCC-------CCE
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeeccccccCHHHHHHHHHHHhhccCCCCCEE
Confidence            45799999999887 36899999999999996 999      9999999876        1112211 1     222   


Q ss_pred             ----ccChhhhHHHHHHHHHHHHhCCCceEEEccccH------------HHHHhCCCCccccC
Q 033515           60 ----VRGPTCAKRLANYLDEVKEDTGINSIFVLERGF------------KGWEASGKPVCRCT  106 (117)
Q Consensus        60 ----~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~------------~~W~~~g~~~~~~~  106 (117)
                          .+|.+ |..++..|..    +||++|++|+||+            .+|..+|+|++...
T Consensus        84 vvyC~~G~r-S~~aa~~L~~----~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~~~  141 (148)
T 2fsx_A           84 IFLCRSGNR-SIGAAEVATE----AGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQGR  141 (148)
T ss_dssp             EEECSSSST-HHHHHHHHHH----TTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEECC-
T ss_pred             EEEcCCChh-HHHHHHHHHH----cCCcceEEEcCChhhhhhhccccccccHHHcCCCCCccc
Confidence                45666 6677777777    9999999999999            68888899887654

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.79  E-value=4.1e-20  Score=117.68  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=71.6

Q ss_pred             cccCHHHHHhhhc--CCCeEEEecCCCCcccCCcccccccCCccchh-HHHH-------HH-----------hhh-----
Q 033515            6 SYISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFT-DKIF-------DL-----------IQE-----   59 (117)
Q Consensus         6 ~~is~~e~~~~~~--~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~-~~~~-------~~-----------~~~-----   59 (117)
                      +.|+++++.++++  .++++|||||++.||..||||||+|||...+. ....       .+           .+.     
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iVv   83 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV   83 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEEE
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEEE
Confidence            6799999999987  35789999999999999999999999998763 2221       22           122     


Q ss_pred             -c-cChhhhHH-----HHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           60 -V-RGPTCAKR-----LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        60 -~-~g~~~a~~-----~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                       | .|.+++..     ++..|.. |+ .||++|++|+||+.+|...+.+++....
T Consensus        84 yc~~g~~s~~a~~~~~~~~~L~~-l~-~G~~~v~~L~GG~~~W~~~~~~~~~~~~  136 (153)
T 2vsw_A           84 YDQSSQDVASLSSDCFLTVLLGK-LE-KSFNSVHLLAGGFAEFSRCFPGLCEGKS  136 (153)
T ss_dssp             ECSSCCCGGGSCTTSHHHHHHHH-HH-HHCSCEEEETTHHHHHHHHCGGGEEC--
T ss_pred             EeCCCCcccccccchHHHHHHHH-HH-hCCCcEEEEeChHHHHHHhChhhhcCCC
Confidence             3 45552222     1344443 11 3999999999999999988777766543

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.78  E-value=1.8e-19  Score=123.95  Aligned_cols=93  Identities=17%  Similarity=0.315  Sum_probs=75.8

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHh------hh------c-cChhhhHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI------QE------V-RGPTCAKRLA   70 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~------~~------~-~g~~~a~~~~   70 (117)
                      ..+.|+++++.+++++++++|||||++.||..||||||+|+|...+......+.      +.      | .|.+ +..++
T Consensus       120 ~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~~~~l~~~l~~~kdk~IVvyC~~G~R-S~~Aa  198 (265)
T 4f67_A          120 AGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFREFPDYVQRNLIDKKDKKIAMFCTGGIR-CEKTT  198 (265)
T ss_dssp             TTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGGGHHHHHHHHTGGGTTSCEEEECSSSHH-HHHHH
T ss_pred             CCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHHhhHHHHHHhhhhCCCCeEEEEeCCChH-HHHHH
Confidence            467899999999998788999999999999999999999999998765332221      12      4 5666 66677


Q ss_pred             HHHHHHHHhCCCceEEEccccHHHHHhCCCC
Q 033515           71 NYLDEVKEDTGINSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~  101 (117)
                      ..|..    .||++|++|+||+.+|.++..+
T Consensus       199 ~~L~~----~Gf~nV~~L~GGi~aW~~~~~~  225 (265)
T 4f67_A          199 AYMKE----LGFEHVYQLHDGILNYLESIPE  225 (265)
T ss_dssp             HHHHH----HTCSSEEEETTHHHHHHHHSCT
T ss_pred             HHHHH----cCCCCEEEecCHHHHHHHhcCc
Confidence            77777    9999999999999999876443

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.78  E-value=2.2e-19  Score=125.59  Aligned_cols=99  Identities=19%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             CcccCHHHHHhhhcCC----CeEEEecC---------CCCcccCCcccccccCCccc-----------------hhHHHH
Q 033515            5 ISYISGSQLLSLKRRP----NIAVIDVR---------DDERSYDGHITGSLHYPSDS-----------------FTDKIF   54 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~----~~~iiDvR---------~~~e~~~ghIpga~~ip~~~-----------------l~~~~~   54 (117)
                      .+.|+++++.++++++    +++|||||         ++.||..||||||+|||.+.                 |...+.
T Consensus        21 ~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~~  100 (302)
T 3olh_A           21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAG  100 (302)
T ss_dssp             CCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHHH
T ss_pred             CCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHHH
Confidence            4679999999998754    89999999         67899999999999998764                 333444


Q ss_pred             HHh--hh------cc---ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCC
Q 033515           55 DLI--QE------VR---GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  107 (117)
Q Consensus        55 ~~~--~~------~~---g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~  107 (117)
                      .+.  ++      |.   |...|..+++.|+.    +||++|++|+||+.+|..+|+|+++...
T Consensus       101 ~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~----~G~~~V~~L~GG~~~W~~~g~p~~~~~~  160 (302)
T 3olh_A          101 RLGVGAATHVVIYDASDQGLYSAPRVWWMFRA----FGHHAVSLLDGGLRHWLRQNLPLSSGKS  160 (302)
T ss_dssp             HTTCCSSCEEEEECCCTTSCSSHHHHHHHHHH----TTCCCEEEETTHHHHHHHSCCC-CCSCC
T ss_pred             HcCCCCCCEEEEEeCCCCCcchHHHHHHHHHH----cCCCcEEECCCCHHHHHHcCCCcccCCC
Confidence            431  22      42   33335566666666    9999999999999999999999988643

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.78  E-value=3.1e-19  Score=122.81  Aligned_cols=94  Identities=16%  Similarity=0.205  Sum_probs=75.6

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCccc--------CCcccccccCCccchhHH-------------HH--HHhhh---
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSFTDK-------------IF--DLIQE---   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~--------~ghIpga~~ip~~~l~~~-------------~~--~~~~~---   59 (117)
                      ..|+++++.+++++++++|||||++.||.        .||||||+|||...+...             +.  .+.++   
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i  226 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEI  226 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEE
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCE
Confidence            46799999999887789999999999999        899999999999876432             22  12222   


Q ss_pred             ----ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhC-CCCccc
Q 033515           60 ----VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCR  104 (117)
Q Consensus        60 ----~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~-g~~~~~  104 (117)
                          .+|.+ |..++..|..    +||++|++|+||+.+|... ++|+++
T Consensus       227 vvyC~~G~r-s~~a~~~L~~----~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          227 VTHCQTHHR-SGLTYLIAKA----LGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             EEECSSSSH-HHHHHHHHHH----TTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             EEECCchHH-HHHHHHHHHH----cCCCCceeeCCcHHHHhcCCCCCCcC
Confidence                45666 6666777766    9999999999999999988 888763

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.78  E-value=4.4e-19  Score=110.83  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=77.9

Q ss_pred             CcccCHHHHHhhhc-CCCeEEEecCCCCcccC-Ccc------cccccCCccchhH--HHHHH------hhh-------cc
Q 033515            5 ISYISGSQLLSLKR-RPNIAVIDVRDDERSYD-GHI------TGSLHYPSDSFTD--KIFDL------IQE-------VR   61 (117)
Q Consensus         5 ~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~-ghI------pga~~ip~~~l~~--~~~~~------~~~-------~~   61 (117)
                      ...|+++++.++++ +++++|||||++.||.. +|+      |||+|||+..+..  ....+      .++       .+
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~s   83 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKF   83 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSS
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCC
Confidence            46799999999886 56899999999999975 444      7999999876531  22333      233       46


Q ss_pred             ChhhhHHHHHHHHHHHHhCCCceEEEccccH---HHHHhCCCCccccCCCC
Q 033515           62 GPTCAKRLANYLDEVKEDTGINSIFVLERGF---KGWEASGKPVCRCTDVP  109 (117)
Q Consensus        62 g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~---~~W~~~g~~~~~~~~~~  109 (117)
                      |.+ |..++..|..    +||++|+.|.||+   .+|..+|+|++.....+
T Consensus        84 G~R-S~~aa~~L~~----~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~~~~  129 (134)
T 1vee_A           84 DGN-SELVAELVAL----NGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTS  129 (134)
T ss_dssp             STT-HHHHHHHHHH----HTCSEEEECTTTTTSTTSSGGGTCCEECCCCCC
T ss_pred             CCc-HHHHHHHHHH----cCCcceEEecCCccCCcchhhcCCCCCCCCCCC
Confidence            777 6677777777    9999999999999   78999999998765543

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.77  E-value=1.5e-19  Score=121.20  Aligned_cols=101  Identities=18%  Similarity=0.302  Sum_probs=74.7

Q ss_pred             CCcccCHHHHHhhhcCC------CeEEEecCCCCcccCCcccccccCCccc-hhHHHH---HHh--hh---------c-c
Q 033515            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDS-FTDKIF---DLI--QE---------V-R   61 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~------~~~iiDvR~~~e~~~ghIpga~~ip~~~-l~~~~~---~~~--~~---------~-~   61 (117)
                      .++.|+++++.++++.+      +++|||||.+.||..||||||+|||... +...+.   .++  ..         . +
T Consensus        55 ~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~l~~~~~~~~~~~k~~~VVvyC~~S  134 (216)
T 3op3_A           55 DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKKPIVPLDTQKRIIIVFHCEFS  134 (216)
T ss_dssp             SSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHHHTSSCCCCSSTTSEEEEEEECCC-
T ss_pred             CCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHHHhhccccccccCCCCEEEEEeCCC
Confidence            57889999999999854      6899999999999999999999999975 433331   111  11         3 5


Q ss_pred             ChhhhHHHHHHHHHHH------HhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           62 GPTCAKRLANYLDEVK------EDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        62 g~~~a~~~~~~l~~~l------~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                      |.+ +..++..|....      ..+||++|++|+||+.+|..+...+..+
T Consensus       135 G~R-s~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~lcep  183 (216)
T 3op3_A          135 SER-GPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYMELCEP  183 (216)
T ss_dssp             -CC-HHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             ChH-HHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCcccccC
Confidence            677 666677776511      1139999999999999999887666554

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.1e-19  Score=113.73  Aligned_cols=95  Identities=16%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             ccCHHHHHh--------hhcCCCeEEEecCCCCcccCCcccccccCCccchhH--HH--HHH--h---------------
Q 033515            7 YISGSQLLS--------LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--KI--FDL--I---------------   57 (117)
Q Consensus         7 ~is~~e~~~--------~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~--~~--~~~--~---------------   57 (117)
                      .|+++|+.+        .+++++++|||||++.||..||||||+|||...+..  ..  ..+  +               
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRI   81 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhcc
Confidence            689999998        665567899999999999999999999999987532  11  111  0               


Q ss_pred             -hh------ccChhhh--------HHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           58 -QE------VRGPTCA--------KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        58 -~~------~~g~~~a--------~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                       ..      ..|.+++        ..++..|.    ..|| +|++|+||+.+|..+|.+++.+.
T Consensus        82 ~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~----~~G~-~v~~l~GG~~~w~~~g~~~~~~~  140 (142)
T 2ouc_A           82 FSKEIIVYDENTNEPSRVMPSQPLHIVLESLK----REGK-EPLVLKGGLSSFKQNHENLCDNS  140 (142)
T ss_dssp             HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHH----HTTC-CCEEETTHHHHHTTTCGGGEEEC
T ss_pred             CCCcEEEEECCCCchhhcCcccHHHHHHHHHH----HcCC-cEEEEccCHHHHHHHCHHhhccc
Confidence             11      2344422        23344444    4999 99999999999999999887653

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.77  E-value=1.9e-19  Score=132.29  Aligned_cols=95  Identities=20%  Similarity=0.388  Sum_probs=81.2

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEVK   77 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~l   77 (117)
                      .+.++++++.+++++++.+|||||++.||..||||||+|+|...+......+++.       .+|.+ |..++..|..  
T Consensus       373 ~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~vvv~C~~G~r-a~~a~~~L~~--  449 (474)
T 3tp9_A          373 YANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHDVPRDGSVCVYCRTGGR-SAIAASLLRA--  449 (474)
T ss_dssp             CEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTTTGGGSCSSSCEEEECSSSHH-HHHHHHHHHH--
T ss_pred             ccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHHhcCCCCCEEEEECCCCHH-HHHHHHHHHH--
Confidence            4678999999998877899999999999999999999999999888766666544       35666 6666777766  


Q ss_pred             HhCCCceEEEccccHHHHHhCCCCccc
Q 033515           78 EDTGINSIFVLERGFKGWEASGKPVCR  104 (117)
Q Consensus        78 ~~~G~~~v~~l~gG~~~W~~~g~~~~~  104 (117)
                        +||++|++|+||+.+|..+|+|+++
T Consensus       450 --~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          450 --HGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             --HTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             --cCCCCEEEecChHHHHHhCCCCCCC
Confidence              9999999999999999999999864

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.77  E-value=2e-19  Score=104.11  Aligned_cols=70  Identities=21%  Similarity=0.292  Sum_probs=58.9

Q ss_pred             CeEEEecCCCCcccCCcccccccCCccchhHHHHHH--hhh-------ccChhhhHHHHHHHHHHHHhCCCceEEEcccc
Q 033515           21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQE-------VRGPTCAKRLANYLDEVKEDTGINSIFVLERG   91 (117)
Q Consensus        21 ~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~--~~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG   91 (117)
                      +++|||||++.||..||||||+|||...+...+.++  .+.       ..|.+ |..++..|.+    .||++|+++ ||
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~~~ivv~C~~g~r-s~~aa~~L~~----~G~~~v~~l-GG   74 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQ-SGQAKEILSE----MGYTHVENA-GG   74 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCHHHHHHHHHHHCCCTTSEEEEEESSSHH-HHHHHHHHHH----TTCSSEEEE-EE
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCHHHHHHHHHHhCCCCCCcEEEEcCCCch-HHHHHHHHHH----cCCCCEEec-cC
Confidence            468999999999999999999999999988877777  333       35666 6677777777    999999999 99


Q ss_pred             HHHHH
Q 033515           92 FKGWE   96 (117)
Q Consensus        92 ~~~W~   96 (117)
                      +.+|.
T Consensus        75 ~~~w~   79 (85)
T 2jtq_A           75 LKDIA   79 (85)
T ss_dssp             TTTCC
T ss_pred             HHHHh
Confidence            99994

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.76  E-value=6.8e-19  Score=122.64  Aligned_cols=100  Identities=23%  Similarity=0.371  Sum_probs=77.2

Q ss_pred             CcccCHHHHHhhhcC----CCeEEEecC--------CCCcccCCcccccccCCccchhHH-----------------HHH
Q 033515            5 ISYISGSQLLSLKRR----PNIAVIDVR--------DDERSYDGHITGSLHYPSDSFTDK-----------------IFD   55 (117)
Q Consensus         5 ~~~is~~e~~~~~~~----~~~~iiDvR--------~~~e~~~ghIpga~~ip~~~l~~~-----------------~~~   55 (117)
                      -+.|+++++.++++.    ++++|||||        ++.||..||||||+|||...+...                 +..
T Consensus         7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~   86 (296)
T 1rhs_A            7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (296)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            358999999999875    589999999        578999999999999998865421                 111


Q ss_pred             H--hhh------c-c--ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           56 L--IQE------V-R--GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        56 ~--~~~------~-~--g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                      +  .++      | .  |.+.+..+++.|..    +||++|++|+||+.+|..+|+|+++....
T Consensus        87 lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~----~G~~~V~~L~GG~~~W~~~g~p~~~~~~~  146 (296)
T 1rhs_A           87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRV----FGHRTVSVLNGGFRNWLKEGHPVTSEPSR  146 (296)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHH----TTCCCEEEETTHHHHHHHTTCCCBCSCCC
T ss_pred             cCCCCCCeEEEEcCCCCCcchHHHHHHHHHH----cCCCcEEEcCCCHHHHHHcCCccccCCCC
Confidence            1  122      3 3  45445566776666    99999999999999999999999876543

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.74  E-value=1.6e-18  Score=119.78  Aligned_cols=94  Identities=20%  Similarity=0.326  Sum_probs=67.3

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcc-----------cCCcccccccCCccchhH--------HHHH------Hhhh-
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTD--------KIFD------LIQE-   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~~l~~--------~~~~------~~~~-   59 (117)
                      ..|+++++.++++.++++|||||++.||           ..||||||+|||...+..        .+..      +.++ 
T Consensus       152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (280)
T 1urh_A          152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDK  231 (280)
T ss_dssp             GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSS
T ss_pred             cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCC
Confidence            4589999999887667899999999999           689999999999987654        2321      1122 


Q ss_pred             -----c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCccc
Q 033515           60 -----V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCR  104 (117)
Q Consensus        60 -----~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~  104 (117)
                           | +|.+ |..++..|..    +||++|++|+||+.+|.. .++|+++
T Consensus       232 ~ivv~C~~G~r-s~~a~~~L~~----~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          232 PIIVSCGSGVT-AAVVLLALAT----LDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             CEEEECCSSST-HHHHHHHHHH----TTCSSCEEECCSCCC-----------
T ss_pred             CEEEECChHHH-HHHHHHHHHH----cCCCCceeeCChHHHHhcCCCCCcee
Confidence                 4 5777 6667777776    999999999999999987 4888875

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.73  E-value=3.5e-18  Score=119.07  Aligned_cols=96  Identities=19%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcc------------cCCcccccccCCccchhH---------HH----HH--Hhh
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERS------------YDGHITGSLHYPSDSFTD---------KI----FD--LIQ   58 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~------------~~ghIpga~~ip~~~l~~---------~~----~~--~~~   58 (117)
                      ..|+++++.++++.++++|||||++.||            ..||||||+|||...+..         .+    ..  +.+
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~  239 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL  239 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCT
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCC
Confidence            5789999999887667899999999999            889999999999987642         11    11  122


Q ss_pred             h-------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCccccC
Q 033515           59 E-------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCT  106 (117)
Q Consensus        59 ~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~~  106 (117)
                      +       .+|.+ |..++..|..    +||++|++|+||+.+|.. .++|++++.
T Consensus       240 ~~~ivv~C~sG~r-s~~a~~~L~~----~G~~~v~~~~GG~~~W~~~~~~pv~~~~  290 (296)
T 1rhs_A          240 TKPLIATCRKGVT-ACHIALAAYL----CGKPDVAIYDGSWFEWFHRAPPETWVSQ  290 (296)
T ss_dssp             TSCEEEECSSSST-HHHHHHHHHH----TTCCCCEEESSHHHHHHHHSCGGGEEBT
T ss_pred             CCCEEEECCcHHH-HHHHHHHHHH----cCCCCceeeCCcHHHHhcCCCCCcccCC
Confidence            2       45777 6666776766    999999999999999988 799998765

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.73  E-value=4.5e-19  Score=112.82  Aligned_cols=94  Identities=18%  Similarity=0.179  Sum_probs=66.6

Q ss_pred             CCcccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchh---------------------HHHHHHhhh-
Q 033515            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFT---------------------DKIFDLIQE-   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~---------------------~~~~~~~~~-   59 (117)
                      .+..|+++++.++++.+  +++|||||++.||..||||||+|||...+.                     ..+..+.+. 
T Consensus        14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   93 (154)
T 1hzm_A           14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTD   93 (154)
T ss_dssp             CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSS
T ss_pred             cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHHHHHHHhccCCCC
Confidence            56789999999988754  789999999999999999999999987542                     111111222 


Q ss_pred             ------ccChhh------hHHHHHHHHHHHHhCCCceEEEccccHHHHHhCC
Q 033515           60 ------VRGPTC------AKRLANYLDEVKEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        60 ------~~g~~~------a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                            ..|.+.      +..++..|.. |...||+ |++|+||+.+|....
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~~~l~~-l~~~G~~-v~~L~GG~~~W~~~~  143 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLGLLLKK-LKDEGCR-AFYLEGGFSKFQAEF  143 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHH-HHHTTCC-CEECCCCHHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHHHHHHH-HHHCCCc-eEEEcChHHHHHHHC
Confidence                  334442      2333444443 3335998 999999999998763

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.73  E-value=5.3e-18  Score=123.28  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=77.3

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcc-----------cCCcccccccCCcc--------------------chhHHHH
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSD--------------------SFTDKIF   54 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~--------------------~l~~~~~   54 (117)
                      ..|+++++.++++.++.+|||||++.||           ..||||||+|||..                    .|...+.
T Consensus       272 ~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  351 (423)
T 2wlr_A          272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWK  351 (423)
T ss_dssp             GEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHH
T ss_pred             heecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHH
Confidence            3589999999887778999999999999           89999999999975                    2222221


Q ss_pred             --HHhhh-------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCccccCCCCCc
Q 033515           55 --DLIQE-------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCTDVPCK  111 (117)
Q Consensus        55 --~~~~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~~~~~~~  111 (117)
                        .+.+.       .+|.+ |..++..|..    +||++|++|+||+.+|.. .++|++++...+++
T Consensus       352 ~~~~~~~~~ivvyC~sG~r-s~~aa~~L~~----~G~~~v~~~~GG~~~W~~~~~~Pv~~~~~~~~~  413 (423)
T 2wlr_A          352 AWNIKPEQQVSFYCGTGWR-ASETFMYARA----MGWKNVSVYDGGWYEWSSDPKNPVATGERGPDS  413 (423)
T ss_dssp             TTTCCTTSEEEEECSSSHH-HHHHHHHHHH----TTCSSEEEESSHHHHHTTSTTSCEECSSCCC--
T ss_pred             HcCCCCCCcEEEECCcHHH-HHHHHHHHHH----cCCCCcceeCccHHHHhcCCCCCcccCCCCCCh
Confidence              12222       45777 5566666666    999999999999999998 89999987665543

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.72  E-value=1.1e-17  Score=115.73  Aligned_cols=95  Identities=16%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             cccCHHHHHhhhc---CCCeEEEecCCCCccc----------------CCcccccccCCccchh-------------HHH
Q 033515            6 SYISGSQLLSLKR---RPNIAVIDVRDDERSY----------------DGHITGSLHYPSDSFT-------------DKI   53 (117)
Q Consensus         6 ~~is~~e~~~~~~---~~~~~iiDvR~~~e~~----------------~ghIpga~~ip~~~l~-------------~~~   53 (117)
                      ..|+++++.++++   ..+..|||||++.||.                .||||||+|||...+.             ..+
T Consensus       146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~  225 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALY  225 (285)
T ss_dssp             GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHH
T ss_pred             eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHH
Confidence            3589999999883   1345799999999996                7999999999987764             222


Q ss_pred             HH--Hhhh------c-cChhhhHHHHHHHH-HHHHhCCCceEEEccccHHHHH-hCCCCcccc
Q 033515           54 FD--LIQE------V-RGPTCAKRLANYLD-EVKEDTGINSIFVLERGFKGWE-ASGKPVCRC  105 (117)
Q Consensus        54 ~~--~~~~------~-~g~~~a~~~~~~l~-~~l~~~G~~~v~~l~gG~~~W~-~~g~~~~~~  105 (117)
                      ..  +.+.      | +|.+ |..++..|. .    +||++|++|+||+.+|. ..|+|++++
T Consensus       226 ~~~g~~~~~~ivvyC~~G~r-s~~a~~~L~~~----~G~~~v~~l~GG~~~W~~~~g~pv~~g  283 (285)
T 1uar_A          226 EPLGITKDKDIVVYCRIAER-SSHSWFVLKYL----LGYPHVKNYDGSWTEWGNLVGVPIAKG  283 (285)
T ss_dssp             GGGTCCTTSEEEEECSSHHH-HHHHHHHHHTT----SCCSCEEEESSHHHHHTTSTTCCCBCS
T ss_pred             HHcCCCCCCCEEEECCchHH-HHHHHHHHHHH----cCCCCcceeCchHHHHhcCCCCCcccC
Confidence            22  2222      4 4555 555666665 5    99999999999999998 789999875

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.71  E-value=8.4e-18  Score=120.68  Aligned_cols=97  Identities=16%  Similarity=0.229  Sum_probs=74.9

Q ss_pred             CcccCHHHHHhhhcCCCeEEEecCC--------CCcccCCcccccccCCccc-hhHH-------------------HHHH
Q 033515            5 ISYISGSQLLSLKRRPNIAVIDVRD--------DERSYDGHITGSLHYPSDS-FTDK-------------------IFDL   56 (117)
Q Consensus         5 ~~~is~~e~~~~~~~~~~~iiDvR~--------~~e~~~ghIpga~~ip~~~-l~~~-------------------~~~~   56 (117)
                      ...|+++++.+++++  ++|||||+        +.||..||||||+|||... +...                   +..+
T Consensus        13 ~~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~   90 (373)
T 1okg_A           13 KVFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMAN   90 (373)
T ss_dssp             CCEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHT
T ss_pred             CcEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHc
Confidence            468999999998874  89999998        6899999999999999875 5321                   1111


Q ss_pred             --hhh------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           57 --IQE------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        57 --~~~------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                        .++      |  .|.+++..+++.|+.    +|| +|++|+||+.+|..+|+|+++....
T Consensus        91 gi~~d~~VVvYc~~~G~rsa~ra~~~L~~----~G~-~V~~L~GG~~aW~~~g~pv~~~~~~  147 (373)
T 1okg_A           91 GMAGELPVLCYDDECGAMGGCRLWWMLNS----LGA-DAYVINGGFQACKAAGLEMESGEPS  147 (373)
T ss_dssp             TCSSSSCEEEECSSTTTTTHHHHHHHHHH----HTC-CEEEETTTTHHHHTTTCCEECSCCC
T ss_pred             CCCCCCeEEEEeCCCCchHHHHHHHHHHH----cCC-eEEEeCCCHHHHHhhcCCcccCCCC
Confidence              111      4  355644466776666    999 9999999999999999999876443

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.71  E-value=1.5e-18  Score=121.44  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcc-----------cCCcccccccCCccchhHH---------HH------HHhhh
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTDK---------IF------DLIQE   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~-----------~~ghIpga~~ip~~~l~~~---------~~------~~~~~   59 (117)
                      ..++.+++.++++.++++|||||++.||           ..||||||+|||...+...         +.      .+.+.
T Consensus       175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  254 (302)
T 3olh_A          175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLS  254 (302)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTT
T ss_pred             ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCC
Confidence            4688999999887678899999999999           8899999999999876421         11      11112


Q ss_pred             -------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCc
Q 033515           60 -------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV  102 (117)
Q Consensus        60 -------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~  102 (117)
                             .+|.+ |..++..|..    +||++|++|+|||.+|..++.|.
T Consensus       255 ~~iv~yC~sG~r-s~~a~~~L~~----~G~~~v~~~~Gg~~~W~~~~~P~  299 (302)
T 3olh_A          255 KPLVATCGSGVT-ACHVALGAYL----CGKPDVPIYDGSWVEWYMRARPE  299 (302)
T ss_dssp             SCEEEECSSSST-THHHHHHHHT----TTCCCCCEESSHHHHHHHHHCCC
T ss_pred             CCEEEECCChHH-HHHHHHHHHH----cCCCCeeEeCCcHHHHhhccCCC
Confidence                   45777 5555665655    99999999999999999988764

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.70  E-value=1.7e-17  Score=114.42  Aligned_cols=92  Identities=20%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             cCHHHHHhhhcCCCeEEEecCCCCcccC----------------CcccccccCCccch-------------hHHHHHH--
Q 033515            8 ISGSQLLSLKRRPNIAVIDVRDDERSYD----------------GHITGSLHYPSDSF-------------TDKIFDL--   56 (117)
Q Consensus         8 is~~e~~~~~~~~~~~iiDvR~~~e~~~----------------ghIpga~~ip~~~l-------------~~~~~~~--   56 (117)
                      ++++++.+++..++  |||||++.||..                ||||||+|||...+             ...+...  
T Consensus       146 ~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~  223 (277)
T 3aay_A          146 AFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGL  223 (277)
T ss_dssp             ECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTC
T ss_pred             cCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCC
Confidence            77999999887544  999999999975                99999999998743             2222221  


Q ss_pred             hhh------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCcccc
Q 033515           57 IQE------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  105 (117)
Q Consensus        57 ~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~  105 (117)
                      .++      | +|.+ |..++..|..   .+||++|++|+||+.+|.. .|+|++++
T Consensus       224 ~~~~~iv~yC~~G~r-s~~a~~~L~~---~~G~~~v~~l~GG~~~W~~~~g~pv~~g  276 (277)
T 3aay_A          224 DNSKETIAYCRIGER-SSHTWFVLRE---LLGHQNVKNYDGSWTEYGSLVGAPIELG  276 (277)
T ss_dssp             CTTSCEEEECSSHHH-HHHHHHHHHT---TSCCSCEEEESSHHHHHTTSTTCCCBCC
T ss_pred             CCCCCEEEEcCcHHH-HHHHHHHHHH---HcCCCcceeeCchHHHHhcCCCCCCccC
Confidence            222      4 4555 4444444431   2899999999999999998 89998764

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.70  E-value=2e-17  Score=111.43  Aligned_cols=88  Identities=19%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccC----------CcccccccCCccchhHH---HH--HHhhh-------ccCh
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTDK---IF--DLIQE-------VRGP   63 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~----------ghIpga~~ip~~~l~~~---~~--~~~~~-------~~g~   63 (117)
                      ..++++++.+     +.+|||||++.||..          ||||||+|||...+...   ..  .+.+.       .+|.
T Consensus       121 ~~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~e~~~~~~~~~~~~iv~~C~~G~  195 (230)
T 2eg4_A          121 WLLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGLQPGQEVGVYCHSGA  195 (230)
T ss_dssp             GBCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCTTHHHHHTCCTTCEEEEECSSSH
T ss_pred             ceeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChHHHHHhcCCCCCCCEEEEcCChH
Confidence            3577777766     578999999999998          99999999999887543   22  22222       3566


Q ss_pred             hhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccc
Q 033515           64 TCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  104 (117)
Q Consensus        64 ~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~  104 (117)
                      + |..++..|..    +| .+|++|+||+.+|...|+|+++
T Consensus       196 r-s~~a~~~L~~----~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          196 R-SAVAFFVLRS----LG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             H-HHHHHHHHHH----TT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             H-HHHHHHHHHH----cC-CCcEEecCcHHHHhhcCCCCCC
Confidence            6 6666777766    99 8999999999999999999863

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.69  E-value=1.8e-17  Score=116.74  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccC----------------CcccccccCCccchh-------------HHHHHH
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD----------------GHITGSLHYPSDSFT-------------DKIFDL   56 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~----------------ghIpga~~ip~~~l~-------------~~~~~~   56 (117)
                      ..++++|+.+++++.  +|||||++.||..                ||||||+|||...+.             ..+..+
T Consensus       179 ~~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~~~l  256 (318)
T 3hzu_A          179 IRAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFI  256 (318)
T ss_dssp             TBCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHTTTC
T ss_pred             ccccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHhcCC
Confidence            357899999988753  8999999999987                999999999997542             112122


Q ss_pred             hhh------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCccccCC
Q 033515           57 IQE------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCTD  107 (117)
Q Consensus        57 ~~~------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~~~  107 (117)
                      .++      | +|.+ |..++..|.+   .+||++|++|+|||.+|.. .++|++++..
T Consensus       257 ~~~~~ivvyC~sG~r-s~~a~~~L~~---~~G~~~v~~~~GG~~~W~~~~g~Pv~~g~~  311 (318)
T 3hzu_A          257 NPDDQTVVYCRIGER-SSHTWFVLTH---LLGKADVRNYDGSWTEWGNAVRVPIVAGEE  311 (318)
T ss_dssp             CTTCCCEEECSSSHH-HHHHHHHHHH---TSCCSSCEECTTHHHHHTTSTTCCCBCSSS
T ss_pred             CCCCcEEEEcCChHH-HHHHHHHHHH---HcCCCCeeEeCCcHHHHhcCCCCCcccCCC
Confidence            222      4 5666 5445554432   2899999999999999995 6999998753

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.68  E-value=2.9e-17  Score=105.13  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             CCcccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH-----HHH-HHh-----------h-h----
Q 033515            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KIF-DLI-----------Q-E----   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-----~~~-~~~-----------~-~----   59 (117)
                      ....|+++++.++++.+  +++|||||++.||..||||||+|||...+..     .+. .++           . .    
T Consensus        18 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp~~~~~l~~~~~~~~~VVv   97 (157)
T 2gwf_A           18 GSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   97 (157)
T ss_dssp             -CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEE
T ss_pred             CCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcCHHHHHHHHhcCCCCEEEE
Confidence            56789999999998755  8999999999999999999999999875531     111 111           1 1    


Q ss_pred             -cc-Chh---hhHHHHHHHHHHHHhC----CCc-eEEEccccHHHHHhCCCCcc
Q 033515           60 -VR-GPT---CAKRLANYLDEVKEDT----GIN-SIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        60 -~~-g~~---~a~~~~~~l~~~l~~~----G~~-~v~~l~gG~~~W~~~g~~~~  103 (117)
                       +. +..   .+..++..|.+.|...    ||. +|++|+||+.+|... +|..
T Consensus        98 y~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~  150 (157)
T 2gwf_A           98 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQY  150 (157)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGG
T ss_pred             EcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chhh
Confidence             22 211   1223345555444443    454 399999999999885 5544

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.68  E-value=3.1e-17  Score=104.91  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CCcccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhH-----HHHH-Hh-----------h-h----
Q 033515            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KIFD-LI-----------Q-E----   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~-----~~~~-~~-----------~-~----   59 (117)
                      ....|+++++.++++..  +++|||||++.||..||||||+|||...+..     .+.. ++           . .    
T Consensus        13 ~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~~~VVv   92 (157)
T 1whb_A           13 EKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   92 (157)
T ss_dssp             CCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCCTTHHHHHHGGGTSSEEEE
T ss_pred             cCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCChHHHHHHHhcCCCCEEEE
Confidence            46789999999999865  7999999999999999999999999865531     1110 11           1 1    


Q ss_pred             -cc-Chh---hhHHHHHHHHHHHHhC----CCc-eEEEccccHHHHHhCCCCcccc
Q 033515           60 -VR-GPT---CAKRLANYLDEVKEDT----GIN-SIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        60 -~~-g~~---~a~~~~~~l~~~l~~~----G~~-~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                       +. +..   .+..++..|.+.|...    ||. +|++|+||+.+|... +|....
T Consensus        93 y~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~  147 (157)
T 1whb_A           93 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTT  147 (157)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBS
T ss_pred             ECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhC
Confidence             22 211   1223344444333333    454 499999999999885 666544

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.67  E-value=2.4e-17  Score=122.91  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=74.2

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      .++.|+++++.++  .++.+|||||++.||..+|||||+|||.+.+...+..++++      | +|.+ |..++..|.+ 
T Consensus       471 ~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~~~~~~~~~~iv~~c~~g~r-s~~a~~~l~~-  546 (565)
T 3ntd_A          471 DATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRMHELPKDKEIIIFSQVGLR-GNVAYRQLVN-  546 (565)
T ss_dssp             SCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTSGGGSCTTSEEEEECSSSHH-HHHHHHHHHH-
T ss_pred             ccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHHHhhcCCcCeEEEEeCCchH-HHHHHHHHHH-
Confidence            3567888888877  46899999999999999999999999999988777777655      4 5666 7777887777 


Q ss_pred             HHhCCCceEEEccccHHHHHhCC
Q 033515           77 KEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                         .|| +|++|+||+.+|..+|
T Consensus       547 ---~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          547 ---NGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             ---TTC-CEEEETTHHHHHHHTC
T ss_pred             ---cCC-CEEEEcChHHHHHhCc
Confidence               999 9999999999998765

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.67  E-value=1e-16  Score=116.53  Aligned_cols=96  Identities=21%  Similarity=0.300  Sum_probs=74.7

Q ss_pred             cccCHHHHHhhhc--------CCCeEEEecC--CCCcccCCcccccccCCccchhH--------------HHHHH--hhh
Q 033515            6 SYISGSQLLSLKR--------RPNIAVIDVR--DDERSYDGHITGSLHYPSDSFTD--------------KIFDL--IQE   59 (117)
Q Consensus         6 ~~is~~e~~~~~~--------~~~~~iiDvR--~~~e~~~ghIpga~~ip~~~l~~--------------~~~~~--~~~   59 (117)
                      ..++++++.++++        .++++|||||  ++.||..||||||+|||...+..              .+...  .+.
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~  203 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHD  203 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTT
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            5688999998876        2478999999  99999999999999999987643              22211  122


Q ss_pred             ------cc-ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           60 ------VR-GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        60 ------~~-g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                            |. |.+ |..++..|..    +||++|++|+||+.+|...++|++++.
T Consensus       204 ~~ivvyC~~G~~-a~~~~~~L~~----~G~~~v~~l~Gg~~~W~~~g~pv~~g~  252 (423)
T 2wlr_A          204 TTVILYGRDVYA-AARVAQIMLY----AGVKDVRLLDGGWQTWSDAGLPVERGT  252 (423)
T ss_dssp             SEEEEECSSHHH-HHHHHHHHHH----HTCSCEEEETTTHHHHHHTTCCCBCSS
T ss_pred             CeEEEECCCchH-HHHHHHHHHH----cCCCCeEEECCCHHHHhhCCCCcccCC
Confidence                  43 444 5566666666    999999999999999999999998753

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.67  E-value=2.7e-17  Score=105.27  Aligned_cols=95  Identities=18%  Similarity=0.241  Sum_probs=66.0

Q ss_pred             CCcccCHHHHHhhhc--------CCCeEEEecCCCCcccCCcccccccCCccchh--HHHH--HHh--------------
Q 033515            4 SISYISGSQLLSLKR--------RPNIAVIDVRDDERSYDGHITGSLHYPSDSFT--DKIF--DLI--------------   57 (117)
Q Consensus         4 ~~~~is~~e~~~~~~--------~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~--~~~~--~~~--------------   57 (117)
                      .+..|+++++.++++        +++++|||||++.||..||||||+|||...+.  ..+.  .+.              
T Consensus         9 ~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (158)
T 3tg1_B            9 SIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSF   88 (158)
T ss_dssp             --CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHHHTCCCCSSCSS
T ss_pred             CCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHhhcCCHHHHHHH
Confidence            578899999999997        34689999999999999999999999998863  1111  110              


Q ss_pred             ---hh-------ccChh--------hhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515           58 ---QE-------VRGPT--------CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        58 ---~~-------~~g~~--------~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~  103 (117)
                         ..       ..|.+        .+..++..|..    .|| +|++|.||+.+|........
T Consensus        89 ~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~----~G~-~v~~L~GG~~~W~~~~p~~~  147 (158)
T 3tg1_B           89 KRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKR----EGK-EPLVLKGGLSSFKQNHENLC  147 (158)
T ss_dssp             TTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHT----TTC-CEEEETTHHHHHTSSCGGGB
T ss_pred             hccCCCeEEEEECCCCcccccCcchHHHHHHHHHHh----CCC-cEEEeCCcHHHHHHHhhhhc
Confidence               01       22311        14445555554    999 69999999999987755443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.65  E-value=3.5e-17  Score=122.75  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=75.1

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      .++.|+++|+.++++ ++.+|||||++.||..||||||+|||.+.+...+..++++      | +|.+ |..++..|.+ 
T Consensus       487 ~~~~i~~~~~~~~~~-~~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~~~~l~~~~~iv~~C~~g~r-s~~a~~~l~~-  563 (588)
T 3ics_A          487 FVDTVQWHEIDRIVE-NGGYLIDVREPNELKQGMIKGSINIPLDELRDRLEEVPVDKDIYITCQLGMR-GYVAARMLME-  563 (588)
T ss_dssp             SCCEECTTTHHHHHH-TTCEEEECSCGGGGGGCBCTTEEECCHHHHTTCGGGSCSSSCEEEECSSSHH-HHHHHHHHHH-
T ss_pred             ccceecHHHHHHHhc-CCCEEEEcCCHHHHhcCCCCCCEECCHHHHHHHHhhCCCCCeEEEECCCCcH-HHHHHHHHHH-
Confidence            467899999999886 5689999999999999999999999998887766666554      4 5666 6677777777 


Q ss_pred             HHhCCCceEEEccccHHHHHhCC
Q 033515           77 KEDTGINSIFVLERGFKGWEASG   99 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g   99 (117)
                         .||+ |++|+||+.+|....
T Consensus       564 ---~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          564 ---KGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             ---TTCC-EEEETTHHHHHHHHC
T ss_pred             ---cCCc-EEEEcchHHHHHhhh
Confidence               9998 999999999998753

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.1e-15  Score=108.04  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             CcccCHHHHHhhhcC---CCeEEEecCC--------C-Ccc-cCCcccccccCCccchhHHHH----------HHhhh--
Q 033515            5 ISYISGSQLLSLKRR---PNIAVIDVRD--------D-ERS-YDGHITGSLHYPSDSFTDKIF----------DLIQE--   59 (117)
Q Consensus         5 ~~~is~~e~~~~~~~---~~~~iiDvR~--------~-~e~-~~ghIpga~~ip~~~l~~~~~----------~~~~~--   59 (117)
                      .+.|||++|.+++..   ..+++||++-        . .|| .++|||||++++.+.+.....          .|...  
T Consensus        27 ~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l~  106 (327)
T 3utn_X           27 FDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMS  106 (327)
T ss_dssp             CEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHHH
Confidence            357999999999862   3589999963        2 356 789999999998876532111          11111  


Q ss_pred             --------------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           60 --------------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        60 --------------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                                    ..+...|..+++.|+.    +|+++|++|+|| .+|.++|+|++++.
T Consensus       107 ~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~----~Gh~~V~vLdGg-~aW~~~g~p~~~~~  162 (327)
T 3utn_X          107 NLGVQKDDILVVYDRVGNFSSPRCAWTLGV----MGHPKVYLLNNF-NQYREFKYPLDSSK  162 (327)
T ss_dssp             HTTCCTTCEEEEECSSSSSSHHHHHHHHHH----TTCSEEEEESCH-HHHHHTTCCCBCCC
T ss_pred             HcCCCCCCEEEEEeCCCCcHHHHHHHHHHH----cCCCceeecccH-HHHHHhCCCcccCC
Confidence                          3333335566666665    999999999976 89999999998764

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.59  E-value=9.6e-17  Score=117.97  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=0.0

Q ss_pred             HHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHHHHhCCCceE
Q 033515           13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEVKEDTGINSI   85 (117)
Q Consensus        13 ~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v   85 (117)
                      +.+++++++++|||||++.||..||||||+|||...+...+..++++       .+|.+ |..++..|..    +||++|
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l~~~~~iv~~C~~G~r-s~~a~~~L~~----~G~~~v  453 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFNKNDVIYVHCQSGIR-SSIAIGILEH----KGYHNI  453 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHHHhhCCCCCeEEEECCCChH-HHHHHHHHHH----cCCCCE
Confidence            44555556789999999999999999999999999988777766654       35666 5566776666    999999


Q ss_pred             EEccccHHHHHh
Q 033515           86 FVLERGFKGWEA   97 (117)
Q Consensus        86 ~~l~gG~~~W~~   97 (117)
                      ++|+||+.+|.+
T Consensus       454 ~~l~GG~~~W~~  465 (466)
T 3r2u_A          454 INVNEGYKDIQL  465 (466)
T ss_dssp             ------------
T ss_pred             EEecChHHHHhh
Confidence            999999999964

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.56  E-value=1.1e-15  Score=112.40  Aligned_cols=95  Identities=18%  Similarity=0.181  Sum_probs=75.2

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccc-hhHHHHHHhhh-------ccChhhhHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDS-FTDKIFDLIQE-------VRGPTCAKRLANYLDE   75 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~-l~~~~~~~~~~-------~~g~~~a~~~~~~l~~   75 (117)
                      .++.|++++|++++++ + +|||||++.+|..||||||+|+|.+. +..+...+...       +.+.. +..+++.|+.
T Consensus       271 ~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~~~~~l~~~~~~vvvy~~~~~-~~~~~~~L~~  347 (474)
T 3tp9_A          271 ERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGWLLPADRPIHLLAADAI-APDVIRALRS  347 (474)
T ss_dssp             EECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSSTTHHHHHHHHCCSSSCEEEECCTTT-HHHHHHHHHH
T ss_pred             CCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcchHHHHHHHhcCCCCCeEEEEECCCc-HHHHHHHHHH
Confidence            5678999999999875 5 99999999999999999999999974 66666665422       33333 3446666666


Q ss_pred             HHHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           76 VKEDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        76 ~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                          +||++|+++.+|+.+|..++.++...
T Consensus       348 ----~G~~~v~~~l~G~~~W~~~g~~~~~~  373 (474)
T 3tp9_A          348 ----IGIDDVVDWTDPAAVDRAAPDDVASY  373 (474)
T ss_dssp             ----TTCCCEEEEECGGGGTTCCGGGEECC
T ss_pred             ----cCCcceEEecCcHHHHHhcccccccc
Confidence                99999998666999999988877654

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.52  E-value=3.6e-15  Score=107.04  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=62.2

Q ss_pred             CCCeEEEecCCCCccc-----------CCcccccccCCccchh----------------HHHHHH----hh---h-----
Q 033515           19 RPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT----------------DKIFDL----IQ---E-----   59 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~~-----------~ghIpga~~ip~~~l~----------------~~~~~~----~~---~-----   59 (117)
                      .++.+|||||++.||.           .||||||+|||+..+.                ..+..+    .+   +     
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivv  251 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF  251 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEE
Confidence            3567899999999999           9999999999997753                112222    33   3     


Q ss_pred             --ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCcccc
Q 033515           60 --VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  105 (117)
Q Consensus        60 --~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~  105 (117)
                        .+|.+ |..++..|..    +||++|++|+|||.+|.. .++|++++
T Consensus       252 yC~sG~r-s~~a~~~L~~----~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          252 SCGSGVT-ACINIALVHH----LGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             ECSSSST-HHHHHHHHHH----TTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             ECCchHH-HHHHHHHHHH----cCCCCeeEeCChHHHHhcCCCCCcccC
Confidence              45777 6566666666    999999999999999987 67776543

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.49  E-value=1.6e-14  Score=97.22  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             CCCeEEEecCCCCcccCCcccccccCCcc--ch---------------hHHHHHHhhh------c-cChhhhHHHHHHHH
Q 033515           19 RPNIAVIDVRDDERSYDGHITGSLHYPSD--SF---------------TDKIFDLIQE------V-RGPTCAKRLANYLD   74 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~~~ghIpga~~ip~~--~l---------------~~~~~~~~~~------~-~g~~~a~~~~~~l~   74 (117)
                      .++++|||||++.||..||||||+|||..  .+               ...+..+...      | .|...+..++    
T Consensus         4 ~~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~----   79 (230)
T 2eg4_A            4 PEDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTA----   79 (230)
T ss_dssp             CTTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHH----
T ss_pred             CCCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHH----
Confidence            35789999999999999999999999988  43               2222333212      3 3441233333    


Q ss_pred             HHHHhCCCceEEEccccHHHHHhCCCCccccC
Q 033515           75 EVKEDTGINSIFVLERGFKGWEASGKPVCRCT  106 (117)
Q Consensus        75 ~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~  106 (117)
                      ..|+ +||++|++|+||   |..  +|+++..
T Consensus        80 ~~L~-~G~~~v~~l~GG---W~~--~p~~~~~  105 (230)
T 2eg4_A           80 FFLG-LGGLEVQLWTEG---WEP--YATEKEE  105 (230)
T ss_dssp             HHHH-HTTCCEEEECSS---CGG--GCCBCSC
T ss_pred             HHHH-cCCceEEEeCCC---Ccc--CcccCCC
Confidence            3567 999999999999   877  7776543

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.9e-13  Score=96.50  Aligned_cols=89  Identities=17%  Similarity=0.303  Sum_probs=60.7

Q ss_pred             ccCHHHHHhhhcC----CCeEEEecCCCCccc-----------CCcccccccCCccchhH---------------HHHHH
Q 033515            7 YISGSQLLSLKRR----PNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFTD---------------KIFDL   56 (117)
Q Consensus         7 ~is~~e~~~~~~~----~~~~iiDvR~~~e~~-----------~ghIpga~~ip~~~l~~---------------~~~~~   56 (117)
                      .++.+++.+.++.    ++++|||+|++.+|.           .||||||+|+|...+..               .+...
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~  264 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKA  264 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHH
Confidence            3567777777764    246899999988873           59999999999876431               01111


Q ss_pred             -h-------hh-------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCC
Q 033515           57 -I-------QE-------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGK  100 (117)
Q Consensus        57 -~-------~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~  100 (117)
                       .       ..       .+|.+ |...+-.|..    +||++|++|+|+|..|.....
T Consensus       265 ~~~~~~gid~~k~vI~yCgsGvt-A~~~~laL~~----lG~~~v~lYdGSWsEW~~r~~  318 (327)
T 3utn_X          265 LKDFHCTLDPSKPTICSCGTGVS-GVIIKTALEL----AGVPNVRLYDGSWTEWVLKSG  318 (327)
T ss_dssp             HHHTTCCCCTTSCEEEECSSSHH-HHHHHHHHHH----TTCCSEEEESSHHHHHHHHHC
T ss_pred             HHHhhcCCCCCCCEEEECChHHH-HHHHHHHHHH----cCCCCceeCCCcHHHhccccC
Confidence             0       01       35666 4333334444    999999999999999986543

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.06  E-value=5.8e-11  Score=87.27  Aligned_cols=72  Identities=22%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CCeEEEecCCCCcccCCcccccccCCcc-chhHHHHHHhhh-------ccChhhhHHHHHHHHHHHHhCCCceEEE-ccc
Q 033515           20 PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFDLIQE-------VRGPTCAKRLANYLDEVKEDTGINSIFV-LER   90 (117)
Q Consensus        20 ~~~~iiDvR~~~e~~~ghIpga~~ip~~-~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~l~~~G~~~v~~-l~g   90 (117)
                      ++++|||+|++.+|..||||||+|||.. .+..+...+...       +.+.+ +..+++.|++    +||++|+. ++|
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~~~~~~~~~~~vvly~~~~~-a~~a~~~L~~----~G~~~v~~~l~g  369 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEINLIGDYHL-VSKATHTLQL----IGYDDIAGYQLP  369 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHHHTTTCCTTSCEEEESCHHH-HHHHHHHHHT----TTCCCEEEEECC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHHHHhccCCCCeEEEEECCch-HHHHHHHhhh----hhcccccccccC
Confidence            5789999999999999999999999987 466666654322       33333 4555665555    99999986 677


Q ss_pred             cHHHHH
Q 033515           91 GFKGWE   96 (117)
Q Consensus        91 G~~~W~   96 (117)
                      +...|.
T Consensus       370 ~~~~~~  375 (466)
T 3r2u_A          370 QSKIQT  375 (466)
T ss_dssp             C-----
T ss_pred             cccccH
Confidence            655443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=95.92  E-value=0.014  Score=36.44  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCCCcc------------cCC-cccccccCCccc
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDDERS------------YDG-HITGSLHYPSDS   48 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~~e~------------~~g-hIpga~~ip~~~   48 (117)
                      .++++++..+.+.+-..|||+|++.|.            ... +|+|.+|+|...
T Consensus        29 ~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~   83 (156)
T 2f46_A           29 QLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTA   83 (156)
T ss_dssp             CCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCT
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCC
Confidence            456777777665444579999987662            233 488899999763

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=95.70  E-value=0.00088  Score=42.92  Aligned_cols=27  Identities=30%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             eEEEecCCCCcccCCcccccccCCccchhHH
Q 033515           22 IAVIDVRDDERSYDGHITGSLHYPSDSFTDK   52 (117)
Q Consensus        22 ~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~   52 (117)
                      .++||||.+.||.    |||+|||...|+.+
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE~~  148 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVEVE  148 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHHHh
Confidence            3899999999998    99999999877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	4e-21
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	1e-11
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	3e-09
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	3e-08
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	4e-08
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	9e-08
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	4e-07
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	7e-07
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	5e-06
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	8e-06
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	2e-05
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	4e-05
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	8e-05
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	2e-04

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.8 bits (195), Expect = 4e-21
 Identities = 74/128 (57%), Positives = 88/128 (68%), Gaps = 15/128 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHI---------------TGSLHYP 45
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI               +  +   
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 62

Query: 46  SDSFTDKIFDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 105
            D  T      + +VRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 63  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 122

Query: 106 TDVPCKEE 113
            +VPCK +
Sbjct: 123 AEVPCKGD 130

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 1e-11
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 26/127 (20%)

Query: 3   RSISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL 56
           + + YIS   + S+             +ID R       GHI G+++   +   +     
Sbjct: 20  QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLK 79

Query: 57  IQEV------------------RGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGWE 96
              V                  RGP   + +        E        ++VL+ G+K + 
Sbjct: 80  KPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFF 139

Query: 97  ASGKPVC 103
              +  C
Sbjct: 140 MKCQSYC 146

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.1 bits (116), Expect = 3e-09
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 6/107 (5%)

Query: 2   ARSISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
            R    ++  ++ + L  R    ++D R  +      I G +  P      ++ +L  + 
Sbjct: 20  ERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDP 79

Query: 61  RGP-----TCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
           R           R       +      N +  L  G  GW  +G+ +
Sbjct: 80  RTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQL 126

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.2 bits (108), Expect = 3e-08
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 5   ISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI----QE 59
           I+  +   + + L  R  +A++DVR+++     H   + + P      +I   +      
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTP 60

Query: 60  VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 99
           +      + LA    +   D G + + +L+ G  GW  +G
Sbjct: 61  ITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAG 100

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-08
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 27/128 (21%)

Query: 3   RSISYISGSQLLSL------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL 56
           + + YIS   +++L             ++D R       GHI  +++ P +   +     
Sbjct: 20  QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK 79

Query: 57  IQE-------------------VRGPTCAKRLANYLDEVKEDT--GINSIFVLERGFKGW 95
                                  RGP   + +      V +        +++L+ G+K +
Sbjct: 80  SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF 139

Query: 96  EASGKPVC 103
                  C
Sbjct: 140 FPQHPNFC 147

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 9e-08
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 34/130 (26%)

Query: 8   ISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK------------- 52
           I+  +L ++   +  ++ ++D R  +   D  I  SL  P ++ +               
Sbjct: 3   ITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDD 62

Query: 53  ---------------IFDLIQEVRGPTCAKRLANYLDEVKE----DTGINSIFVLERGFK 93
                          + D     +       L +  D + +        N   VLE G++
Sbjct: 63  SKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYE 122

Query: 94  GWEASGKPVC 103
            W        
Sbjct: 123 NWLLCYPQYT 132

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 43.7 bits (102), Expect = 4e-07
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 21/116 (18%)

Query: 8   ISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDS------------------ 48
           +S   +      P + V++V +D   YD GHI G+                         
Sbjct: 9   VSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAK 68

Query: 49  -FTDKIFDLIQEVRGPTCAK-RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
                       V          A Y     +  G   + ++  G + W   G+P+
Sbjct: 69  LMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPL 124

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (99), Expect = 7e-07
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 4  SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------KIFDLI 57
              I+ +      +     ++D+RD +    GH   + H  +D+             ++
Sbjct: 3  QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVM 62

Query: 58 QEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 97
                  +K  A YL +     G + ++ ++ GF+ W+ 
Sbjct: 63 VMCYHGNSSKGAAQYLLQQ----GYDVVYSIDGGFEAWQR 98

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 5e-06
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 5   ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPT 64
              I  + L      P   V+D          HI G+           +  L    R   
Sbjct: 4   ADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVL 63

Query: 65  CAK---RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQQY 117
                      + EV+  +G   +F+L+ G   W A+G P      +       +Y
Sbjct: 64  TCGSSLLARFAVAEVQALSGKP-VFLLDGGTSAWVAAGLPTEDGESLLASPRIDRY 118

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 40.2 bits (93), Expect = 8e-06
 Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 8/106 (7%)

Query: 5   ISYISGSQLLS-LKRRPNIAVIDVRDD---ERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           +  +S       L+  P+I +IDVRD    +      +    H         +     + 
Sbjct: 22  MVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP 81

Query: 61  RGPTCAKRLANYLDEV----KEDTGINSIFVLERGFKGWEASGKPV 102
             P            +      + G  +I+  E G   W   G P 
Sbjct: 82  EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPS 127

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 22/97 (22%)

Query: 24  VIDVRDDERSYDGHITGSLHYPSDSFT------------------DKIFDLIQEVRGPTC 65
            +DVR  E    GH  G+++ P  +                     +  ++I   +    
Sbjct: 25  YLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR 84

Query: 66  AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
           + +    L           +  +  G+  W  +G P 
Sbjct: 85  SIKATTDLLHAG----FTGVKDIVGGYSAWAKNGLPT 117

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.1 bits (87), Expect = 4e-05
 Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 24/125 (19%)

Query: 8   ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGPTCAK 67
           I  + L +    P + ++D+    R  +GHI G+                         +
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 68  RLANYLDEVK----------------------EDTGINSIFVLERGFKGWEASGKPVCRC 105
            L   L                          +  G      L  G   W A  +P+   
Sbjct: 71  SLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL--S 128

Query: 106 TDVPC 110
            ++P 
Sbjct: 129 RELPA 133

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (86), Expect = 8e-05
 Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 32/122 (26%)

Query: 13  LLSLKRRPNIAVIDVR-------DDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGPT 64
           + + K  P + V+D         +  + Y   H+ G+  +  +   DK       +    
Sbjct: 19  VRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEA 78

Query: 65  CAKRLANYLDEVKEDT------------------------GINSIFVLERGFKGWEASGK 100
                   L    +                          G  ++ VL  GF+ W   G 
Sbjct: 79  GFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGH 138

Query: 101 PV 102
           PV
Sbjct: 139 PV 140

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 15/109 (13%)

Query: 4   SISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT--------DKI 53
            +  +  + L     +      ++DVR  E    GH+ GS   P              + 
Sbjct: 21  GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVRG 80

Query: 54  FDLIQEVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 102
             L+        A   A++L ++        + VL+   +   +     
Sbjct: 81  ARLVLVDDDGVRANMSASWLAQMGWQ-----VAVLDGLSEADFSERGAW 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.96
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.91
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.9
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.9
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.9
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.87
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.86
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.86
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.84
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.84
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.84
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.77
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.73
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.69
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.66
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.64
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.57

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.9e-30  Score=160.05  Aligned_cols=115  Identities=67%  Similarity=1.125  Sum_probs=94.1

Q ss_pred             CCCCCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh----------c-cChhhhHHH
Q 033515            1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE----------V-RGPTCAKRL   69 (117)
Q Consensus         1 ~~~~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~----------~-~g~~~a~~~   69 (117)
                      |++.+..|+++|+.+++++++++|||||++.||..||||||+|||...+...++++...          + .|...+..+
T Consensus         3 ~~~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~iv~~c~~~~~~~~~a   82 (132)
T d1t3ka_           3 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTC   82 (132)
T ss_dssp             CCSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSSHHHH
T ss_pred             cccCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeecccccccccccccccccceEEEeccccccchHH
Confidence            45589999999999999988999999999999999999999999999888766665432          2 222213333


Q ss_pred             H----HHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCCCchhhh
Q 033515           70 A----NYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCKEENQ  115 (117)
Q Consensus        70 ~----~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~~~~~~  115 (117)
                      +    ..+...|...||++|++|+||+.+|..+|+|+.+....|+++.|.
T Consensus        83 a~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~~p~~~~~~  132 (132)
T d1t3ka_          83 ARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPCKGDCA  132 (132)
T ss_dssp             HHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSCSSCSSCCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccCCCCCCCCCCC
Confidence            3    333335567899999999999999999999999999999999995

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.91  E-value=1.2e-25  Score=138.98  Aligned_cols=100  Identities=24%  Similarity=0.355  Sum_probs=76.8

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHH-------------HHHHhhh-------------
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-------------IFDLIQE-------------   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~-------------~~~~~~~-------------   59 (117)
                      ..|+++||++++.+++++|||||+++||..||||||+|+|...+...             .......             
T Consensus         9 ~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (135)
T d1e0ca1           9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYD   88 (135)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             cEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccccc
Confidence            46899999999988899999999999999999999999997664310             1111000             


Q ss_pred             ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515           60 VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  109 (117)
Q Consensus        60 ~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~  109 (117)
                      +.+...+..++..+..    +||++|++|+||+.+|+++|+|++++.+.|
T Consensus        89 ~~~~~~~~~~~~~l~~----~G~~~V~~l~GG~~~W~~~g~p~~~~~p~P  134 (135)
T d1e0ca1          89 DEGGGWAGRFIWLLDV----IGQQRYHYLNGGLTAWLAEDRPLSRELPAP  134 (135)
T ss_dssp             SSSSHHHHHHHHHHHH----TTCCCEEEETTHHHHHHHTTCCCBCCCCCC
T ss_pred             cccCccchhhHHHHHh----ccCCCEEEecChHHHHHHCCCCCCCCCCCC
Confidence            2233324455555555    999999999999999999999999987665

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=4.8e-25  Score=137.03  Aligned_cols=101  Identities=18%  Similarity=0.298  Sum_probs=85.6

Q ss_pred             CCcccCHHHHHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------ccChhhhHHHHHHHH
Q 033515            4 SISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------VRGPTCAKRLANYLD   74 (117)
Q Consensus         4 ~~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~~g~~~a~~~~~~l~   74 (117)
                      .++.|++++++++++ +.+++|||||++.||..||||||+|||...+...+..+..+        |.+..++..++..|.
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~~~~l~~~~~~~iV~~C~~g~rs~~aa~~L~  101 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLL  101 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHHHHHCCSTTSEEEEECSSSHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhhHHHHHhhcccccccceEEEEcCCCCchHHHHHHHH
Confidence            567899999999885 45789999999999999999999999999999888877543        544334777777777


Q ss_pred             HHHHhCCCce-EEEccccHHHHHhCCCCccccCCC
Q 033515           75 EVKEDTGINS-IFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        75 ~~l~~~G~~~-v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                      +    +||++ |++|.||+.+|..+|+|++++...
T Consensus       102 ~----~G~~~~V~~L~GG~~~W~~~G~pve~g~~~  132 (136)
T d1yt8a1         102 N----AGIPNPVAALRNGTIGWTLAGQQLEHGQTR  132 (136)
T ss_dssp             H----TTCSSCEEEETTHHHHHHHTTCCCBCSCCC
T ss_pred             H----cCCCceEEEeCCcHHHHHHCCCCceeCCCC
Confidence            7    99986 999999999999999999988643

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.2e-25  Score=131.94  Aligned_cols=96  Identities=20%  Similarity=0.371  Sum_probs=82.5

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh-------ccChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~-------~~g~~~a~~~~~~l~~~   76 (117)
                      .++.||++|+.+++++++++|||||++.||..||||||+|+|.+.+.....++.+.       ..|.+ +..++..|.. 
T Consensus         3 ~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~~~~~~~~~~~ivv~c~~g~r-s~~~a~~L~~-   80 (108)
T d1gmxa_           3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMCYHGNS-SKGAAQYLLQ-   80 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHHHHHSCTTSCEEEECSSSSH-HHHHHHHHHH-
T ss_pred             CCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccchhHHHHhhhccccCcccccCCCChH-HHHHHHHHHH-
Confidence            36789999999999888899999999999999999999999999998888877665       35666 6677777777 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                         .||++|++|+||+.+|.++ +|++..
T Consensus        81 ---~G~~~v~~l~GG~~~W~~~-~p~e~~  105 (108)
T d1gmxa_          81 ---QGYDVVYSIDGGFEAWQRQ-FPAEVA  105 (108)
T ss_dssp             ---HTCSSEEEETTHHHHHHHH-CGGGEE
T ss_pred             ---cCCCCEEEEcChHHHHHHc-CCCccC
Confidence               9999999999999999755 777643

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.2e-24  Score=136.92  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=87.8

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh------c-cChhhhHHHHHHHHHH
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE------V-RGPTCAKRLANYLDEV   76 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~------~-~g~~~a~~~~~~l~~~   76 (117)
                      .+..|+++++.+++++++.+|||||++.||..||||||+|+|...+......+.+.      | .|.+ +..++..|.. 
T Consensus         3 ~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~~~~~~~~~~~vv~~c~~g~r-s~~~a~~l~~-   80 (157)
T d1yt8a3           3 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVLTCGSSLL-ARFAVAEVQA-   80 (157)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHHHHHCCCSEEEEECSSSHH-HHHHHHHHHH-
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccccccccccccccCcceeeccCCcch-HHHHHHHHhc-
Confidence            45789999999999888899999999999999999999999999988777666554      4 4555 6566666666 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCCCccccCCCCCc
Q 033515           77 KEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK  111 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~~  111 (117)
                         +||++|++|.||+.+|..+|+|+++++..+..
T Consensus        81 ---~G~~~v~~L~GG~~~W~~aGlp~~~~~~~~~~  112 (157)
T d1yt8a3          81 ---LSGKPVFLLDGGTSAWVAAGLPTEDGESLLAS  112 (157)
T ss_dssp             ---HHCSCEEEETTHHHHHHHTTCCCBCSSCCBSS
T ss_pred             ---ccCceEEEecCCHHHHhhCCCCCcCCCCCCCC
Confidence               99999999999999999999999998776544

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=5.9e-24  Score=125.70  Aligned_cols=91  Identities=20%  Similarity=0.321  Sum_probs=74.9

Q ss_pred             cccCHHHHHhhhc-CCCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh--------ccChhhhHHHHHHHHHH
Q 033515            6 SYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--------VRGPTCAKRLANYLDEV   76 (117)
Q Consensus         6 ~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~--------~~g~~~a~~~~~~l~~~   76 (117)
                      ..+|.+|+++++. +++++|||||++.||..||||||+|+|...+......+...        +.+..++..++..|.+ 
T Consensus         2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~~~~~~~~~~~vv~~~~~g~~s~~~~~~l~~-   80 (101)
T d1yt8a2           2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTPITVYDDGEGLAPVAAQRLHD-   80 (101)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHSCCTTSCEEEECSSSSHHHHHHHHHHH-
T ss_pred             CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccchhhhhhhcccccCceeeeccchhhhHHHHHHHHHH-
Confidence            4678999998764 66899999999999999999999999999887766655432        4433347777777777 


Q ss_pred             HHhCCCceEEEccccHHHHHhCCC
Q 033515           77 KEDTGINSIFVLERGFKGWEASGK  100 (117)
Q Consensus        77 l~~~G~~~v~~l~gG~~~W~~~g~  100 (117)
                         .||++|++|+||+.+|.++|.
T Consensus        81 ---~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          81 ---LGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             ---TTCSSEEEETTHHHHHHHTTC
T ss_pred             ---cCCCcEEEeCChHHHHHHCcC
Confidence               999999999999999998874

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.3e-23  Score=130.85  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=75.0

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCC----------CcccCCcccccccCCccchhHH-------------HHHH-hhh--
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDD----------ERSYDGHITGSLHYPSDSFTDK-------------IFDL-IQE--   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~----------~e~~~ghIpga~~ip~~~l~~~-------------~~~~-~~~--   59 (117)
                      -.|++++|.+.|++++++|||+|..          ++|..||||||+|++...+...             +..+ ...  
T Consensus         3 ~lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi   82 (147)
T d1urha1           3 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   82 (147)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCc
Confidence            4689999999999889999999942          4688999999999986543311             1111 110  


Q ss_pred             ---------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCCCc
Q 033515           60 ---------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK  111 (117)
Q Consensus        60 ---------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~~~  111 (117)
                               + .+...|..++..|+.    +||++|++|+||+.+|..+|+|++++...+..
T Consensus        83 ~~~~~vVvY~~~~~~~A~r~~~~L~~----~G~~~V~vLdGG~~~W~~~g~pv~~~~~~~~~  140 (147)
T d1urha1          83 NQDKHLIVYDEGNLFSAPRAWWMLRT----FGVEKVSILGGGLAGWQRDDLLLEEGAVELPE  140 (147)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHH----TTCSCEEEETTHHHHHHHTTCCCBBSCCCCCC
T ss_pred             CCCCeEEEEeCCCcccchhHHHHHHh----hcccceEEeCChHHHHHHcCCCccCCCCCCCC
Confidence                     3 223324455555555    99999999999999999999999998765443

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.3e-22  Score=126.86  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCC-CCcccCCcccccccCCccc---------------hhHHHHHHh--hh------c-
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRD-DERSYDGHITGSLHYPSDS---------------FTDKIFDLI--QE------V-   60 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~-~~e~~~ghIpga~~ip~~~---------------l~~~~~~~~--~~------~-   60 (117)
                      ..||+++|++.+++++++|||||. ..+|..||||||+|++...               |...+..+.  ++      + 
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~   86 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   86 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecC
Confidence            468999999999888999999996 6789999999999997532               112222221  11      2 


Q ss_pred             cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515           61 RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  109 (117)
Q Consensus        61 ~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~  109 (117)
                      .|...|..++..    |+.+||++|++|+||+.+|..+|+|++++...+
T Consensus        87 ~~~~~a~~~~~~----l~~~G~~~V~vldGG~~~W~~~g~p~~~~~~~~  131 (143)
T d1uara1          87 KNNWWAAYAFWF----FKYNGHKDVRLMNGGRQKWVEEGRPLTTEVPSY  131 (143)
T ss_dssp             HHHHHHHHHHHH----HHHTTCSCEEEETTHHHHHHHHTCCCBCCCCCC
T ss_pred             CCcccchhHHHH----HHHhCCceEEEEcCcHHHHHHCCCCccCCCCCC
Confidence            222223333444    445999999999999999999999999875543

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.86  E-value=2.1e-22  Score=125.12  Aligned_cols=100  Identities=21%  Similarity=0.302  Sum_probs=82.3

Q ss_pred             CCcccCHHHHHhhhc-CCCeEEEecCCCCcccCCc---ccccccCCccchhHHHHHH--hhh------c-cChhhhHHHH
Q 033515            4 SISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGH---ITGSLHYPSDSFTDKIFDL--IQE------V-RGPTCAKRLA   70 (117)
Q Consensus         4 ~~~~is~~e~~~~~~-~~~~~iiDvR~~~e~~~gh---Ipga~~ip~~~l~~~~~~~--~~~------~-~g~~~a~~~~   70 (117)
                      .+..||++|++++++ +++++|||||++.||..+|   |+|++|+|...+...+...  .++      | +|.+ |..++
T Consensus        21 ~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~~~~~~~~~~~~ivvyC~~G~r-s~~aa   99 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDPEKPVVVFCKTAAR-AALAG   99 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHHHHHCCCTTSCEEEECCSSSC-HHHHH
T ss_pred             cCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcccccccccccccCcccceeeeecccch-HHHHH
Confidence            577899999999986 5789999999999999998   5678889998887766543  222      4 5666 66778


Q ss_pred             HHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           71 NYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        71 ~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                      ..|..    +||++|++|+||+.+|..+|+|+......
T Consensus       100 ~~L~~----~G~~nV~~l~GG~~~W~~~g~P~~~~~~~  133 (137)
T d1qxna_         100 KTLRE----YGFKTIYNSEGGMDKWLEEGLPSLDRSHH  133 (137)
T ss_dssp             HHHHH----HTCSCEEEESSCHHHHHHTTCCEECCCCC
T ss_pred             HHHHH----cCCCcEEEecCHHHHHHHcCCCCCCCCcc
Confidence            87777    99999999999999999999998865543

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=9.3e-23  Score=128.34  Aligned_cols=101  Identities=23%  Similarity=0.339  Sum_probs=73.3

Q ss_pred             CcccCHHHHHhhhc----CCCeEEEecCC--------CCcccCCcccccccCCccchhH-------------HHHH-Hhh
Q 033515            5 ISYISGSQLLSLKR----RPNIAVIDVRD--------DERSYDGHITGSLHYPSDSFTD-------------KIFD-LIQ   58 (117)
Q Consensus         5 ~~~is~~e~~~~~~----~~~~~iiDvR~--------~~e~~~ghIpga~~ip~~~l~~-------------~~~~-~~~   58 (117)
                      .+.||+++|.+.++    +++++|||||.        .++|.+||||||+|++.+.+..             .+.. +..
T Consensus         7 ~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   86 (149)
T d1rhsa1           7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (149)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhh
Confidence            46789999999986    35799999993        3579999999999998765431             1111 111


Q ss_pred             h-----------cc---ChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCCC
Q 033515           59 E-----------VR---GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  109 (117)
Q Consensus        59 ~-----------~~---g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~~  109 (117)
                      .           +.   +...+..++..|+.    +||++|++|+||+.+|+++|+|+++....|
T Consensus        87 ~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~----~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~  147 (149)
T d1rhsa1          87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRV----FGHRTVSVLNGGFRNWLKEGHPVTSEPSRP  147 (149)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHH----TTCCCEEEETTHHHHHHHTTCCCBCSCCCC
T ss_pred             hhccCCceeEEeeccCCcchhhhHHHHHHHH----cCCCceEEeCCcHHHHHHCcCcccCCCCCC
Confidence            1           11   12224455555555    999999999999999999999999887654

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=6.4e-23  Score=124.63  Aligned_cols=94  Identities=21%  Similarity=0.272  Sum_probs=74.4

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCcccCCcccccccCCccchh--------HHHHHH----hhh------c-cChh
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT--------DKIFDL----IQE------V-RGPT   64 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~--------~~~~~~----~~~------~-~g~~   64 (117)
                      .+..+++.++.++++ .+.+|||||++.||..||||||+|+|...+.        ..+..+    .++      | +|.+
T Consensus         6 ~p~~i~~~~a~~l~~-~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~r   84 (119)
T d1tq1a_           6 VPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR   84 (119)
T ss_dssp             CCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSH
T ss_pred             CCCccCHHHHHHHHH-CcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcCc
Confidence            467889999999887 4678999999999999999999999975432        122222    222      3 5777


Q ss_pred             hhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCcc
Q 033515           65 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        65 ~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~  103 (117)
                       |..++..|.+    .||++|++|+||+.+|.++|+|++
T Consensus        85 -s~~a~~~L~~----~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          85 -SIKATTDLLH----AGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             -HHHHHHHHHH----HHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             -HHHHHHHHHh----cccCCeEEecChHHHHHHCCCCcc
Confidence             6667777777    999999999999999999999986

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.84  E-value=1.4e-21  Score=121.12  Aligned_cols=95  Identities=17%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             CCcccCHHHHHhhhcCCCeEEEecCCCCccc--------CCcccccccCCccchhH-------------HHHHHh--hh-
Q 033515            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSFTD-------------KIFDLI--QE-   59 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~~~~iiDvR~~~e~~--------~ghIpga~~ip~~~l~~-------------~~~~~~--~~-   59 (117)
                      .-+.++.+++++.+.+++++|||+|++.||.        .||||||+|+|...+..             .+..+.  +. 
T Consensus        10 ~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~   89 (136)
T d1e0ca2          10 DEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDK   89 (136)
T ss_dssp             STTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTS
T ss_pred             CCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCC
Confidence            4568999999999988899999999999985        79999999999765421             111111  11 


Q ss_pred             ------ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCcc
Q 033515           60 ------VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVC  103 (117)
Q Consensus        60 ------~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~  103 (117)
                            .+|.+ |..++..|..    +||++|++|+||+.+|.. .+.|++
T Consensus        90 ~vV~yC~~G~~-a~~~~~~l~~----~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          90 EIVTHCQTHHR-SGLTYLIAKA----LGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEEEECSSSSH-HHHHHHHHHH----TTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             ceEEeCCChHH-HHHHHHHHHH----cCCCCcEEecCCHHHHhcCCCCCCc
Confidence                  34666 4455555555    999999999999999965 478875

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1e-21  Score=120.93  Aligned_cols=92  Identities=18%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             CCcccCHHHHHhhhcC--CCeEEEecCCCCcccCCcccccccCCccchhHHHHHHhhh---------ccChhhhHHHHHH
Q 033515            4 SISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE---------VRGPTCAKRLANY   72 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~--~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~~~~---------~~g~~~a~~~~~~   72 (117)
                      .+..|+++++++++++  ++++|||||++.||..||||||+|+|...+......+...         .+|.+ |..++..
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~~~~~~~~~~~ivl~C~~G~r-S~~aa~~   99 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVRGARLVLVDDDGVR-ANMSASW   99 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSHHHHCCSBTCEEEEECSSSSH-HHHHHHH
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCcccccccccccccccccCCccceEEeecCCCcc-HHHHHHH
Confidence            5789999999999864  3589999999999999999999999998887655544222         45666 7777888


Q ss_pred             HHHHHHhCCCceEEEccccHHHHHhCCCC
Q 033515           73 LDEVKEDTGINSIFVLERGFKGWEASGKP  101 (117)
Q Consensus        73 l~~~l~~~G~~~v~~l~gG~~~W~~~g~~  101 (117)
                      |.+    +|| +|++|+||+.+|..++..
T Consensus       100 L~~----~G~-~v~~l~GG~~aw~~~~g~  123 (130)
T d1yt8a4         100 LAQ----MGW-QVAVLDGLSEADFSERGA  123 (130)
T ss_dssp             HHH----TTC-EEEEECSCCGGGCCBCSS
T ss_pred             HHH----cCC-CeEEEcCchHHHHHhcCC
Confidence            887    999 799999999999877644

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=114.78  Aligned_cols=101  Identities=20%  Similarity=0.343  Sum_probs=73.3

Q ss_pred             CCcccCHHHHHhhhcC------CCeEEEecCCCCcccCCcccccccCCccchh-HHHHHHh------hh------c--cC
Q 033515            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFT-DKIFDLI------QE------V--RG   62 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~------~~~~iiDvR~~~e~~~ghIpga~~ip~~~l~-~~~~~~~------~~------~--~g   62 (117)
                      .++.|+++++.+++++      ++++|||||++.||..|||+||+|||..... ..+....      +.      |  ++
T Consensus        21 ~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~~l~~~~~~~~~~~~~~vV~yc~~s~  100 (161)
T d1c25a_          21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSS  100 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTTSCCCCCTTSEEEEEEECSSSS
T ss_pred             CCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHHHHhhhhhhhhhccCCeEEEEecccc
Confidence            5788999999999874      3689999999999999999999999975432 2211110      00      3  45


Q ss_pred             hhhhHHHHHHHHHHH------HhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           63 PTCAKRLANYLDEVK------EDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        63 ~~~a~~~~~~l~~~l------~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                      .+ +..++..+....      ...||++|++|.||+.+|..+...++..
T Consensus       101 ~r-s~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc~p  148 (161)
T d1c25a_         101 ER-GPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEP  148 (161)
T ss_dssp             SH-HHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEES
T ss_pred             cc-HHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCccCC
Confidence            55 555666665421      1349999999999999999887666543

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.77  E-value=2.9e-19  Score=112.78  Aligned_cols=96  Identities=18%  Similarity=0.230  Sum_probs=68.1

Q ss_pred             cccCHHHHHhhhcCCCeEEEecC--------CCCcccCCcccccccCCccch-h-------------------HHHHHHh
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVR--------DDERSYDGHITGSLHYPSDSF-T-------------------DKIFDLI   57 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR--------~~~e~~~ghIpga~~ip~~~l-~-------------------~~~~~~~   57 (117)
                      ..|+++||.+.+.  +++|||||        ...+|..||||||++++.+.. .                   ..+..+.
T Consensus         8 ~lvs~~~L~~~l~--d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lG   85 (156)
T d1okga1           8 VFLDPSEVADHLA--EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANG   85 (156)
T ss_dssp             CEECHHHHTTCGG--GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             cEeCHHHHHHhcC--CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhcc
Confidence            4799999999885  48999999        357899999999999876421 1                   1111110


Q ss_pred             --hh------c--cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCCCccccCCC
Q 033515           58 --QE------V--RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  108 (117)
Q Consensus        58 --~~------~--~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~~~~~~~~~  108 (117)
                        ..      +  .|...|..+++.|+.    +|+ +|++|+||+.+|+.+|+|++++...
T Consensus        86 I~~~~~VVvYd~~~g~~~A~R~~w~L~~----~G~-~v~iLdGG~~aW~~~G~pv~t~~p~  141 (156)
T d1okga1          86 MAGELPVLCYDDECGAMGGCRLWWMLNS----LGA-DAYVINGGFQACKAAGLEMESGEPS  141 (156)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHH----HTC-CEEEETTTTHHHHTTTCCEECSCCC
T ss_pred             ccCCceEEEEeCCCCchHHHHHHHHHHH----cCC-eeEEeCCCHHHHHHCCCCCCCCCCC
Confidence              00      1  222224455555555    997 7999999999999999999987543

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=9.6e-20  Score=113.79  Aligned_cols=90  Identities=20%  Similarity=0.292  Sum_probs=67.7

Q ss_pred             cccCHHHHHhhhcCCCeEEEecCCCCccc------------CCcccccccCCccchhH---------HHHHHhhh-----
Q 033515            6 SYISGSQLLSLKRRPNIAVIDVRDDERSY------------DGHITGSLHYPSDSFTD---------KIFDLIQE-----   59 (117)
Q Consensus         6 ~~is~~e~~~~~~~~~~~iiDvR~~~e~~------------~ghIpga~~ip~~~l~~---------~~~~~~~~-----   59 (117)
                      -.++.+|+.+.+++++++|||+|++.||.            .||||||+|+|...+..         .+..+-..     
T Consensus        11 ~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~   90 (144)
T d1rhsa2          11 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL   90 (144)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCT
T ss_pred             HeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCC
Confidence            35788999999988889999999999883            69999999999876521         12111111     


Q ss_pred             -------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHhCCC
Q 033515           60 -------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGK  100 (117)
Q Consensus        60 -------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~~g~  100 (117)
                             | +|.+ |..++..|..    +||++|++|+|||..|...+.
T Consensus        91 ~~~iI~yC~sG~~-A~~~~~~l~~----lG~~~v~~YdGsw~eW~~~~~  134 (144)
T d1rhsa2          91 TKPLIATCRKGVT-ACHIALAAYL----CGKPDVAIYDGSWFEWFHRAP  134 (144)
T ss_dssp             TSCEEEECSSSST-HHHHHHHHHH----TTCCCCEEESSHHHHHHHHSC
T ss_pred             CCCEEEEecccch-HHHHHHHHHH----cCCCCCEEeCCCHHHHhhcCC
Confidence                   3 5777 4445555555    999999999999999987654

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-18  Score=111.44  Aligned_cols=101  Identities=16%  Similarity=0.315  Sum_probs=72.9

Q ss_pred             CCcccCHHHHHhhhcCC------CeEEEecCCCCcccCCcccccccCCccchhHHHHHH------hhh--------c--c
Q 033515            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL------IQE--------V--R   61 (117)
Q Consensus         4 ~~~~is~~e~~~~~~~~------~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~~~~~------~~~--------~--~   61 (117)
                      .+..|++++|.++++++      +++|||||++.||..|||+||+|||...+.......      ...        |  +
T Consensus        21 ~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s  100 (174)
T d1ymka1          21 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFS  100 (174)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTTTCCC----CEEEEEEECSSS
T ss_pred             CCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHHHhhhhhhhhccCceEEEEeCCC
Confidence            56789999999999742      589999999999999999999999988765432110      000        3  2


Q ss_pred             ChhhhHHHHHHHHHH------HHhCCCceEEEccccHHHHHhCCCCcccc
Q 033515           62 GPTCAKRLANYLDEV------KEDTGINSIFVLERGFKGWEASGKPVCRC  105 (117)
Q Consensus        62 g~~~a~~~~~~l~~~------l~~~G~~~v~~l~gG~~~W~~~g~~~~~~  105 (117)
                      +.+ +..++..+...      +...||++|++|+||+.+|......+..+
T Consensus       101 ~~r-~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~yP~lCe~  149 (174)
T d1ymka1         101 SER-GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  149 (174)
T ss_dssp             SSH-HHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             Cch-HHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHhCchhccc
Confidence            334 55556555431      12459999999999999998876655443

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=6.3e-18  Score=105.06  Aligned_cols=93  Identities=17%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             HHHHHhhh---cCCCeEEEecCCCCccc----------------CCcccccccCCccchhH---------HHHHHhhh--
Q 033515           10 GSQLLSLK---RRPNIAVIDVRDDERSY----------------DGHITGSLHYPSDSFTD---------KIFDLIQE--   59 (117)
Q Consensus        10 ~~e~~~~~---~~~~~~iiDvR~~~e~~----------------~ghIpga~~ip~~~l~~---------~~~~~~~~--   59 (117)
                      .+++.+.+   ++++.+|||+|++.||.                .||||||+|+|...+..         .+..+...  
T Consensus         6 ~~~v~~~~~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~g   85 (141)
T d1uara2           6 RDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLG   85 (141)
T ss_dssp             HHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhC
Confidence            34554433   35688999999998884                79999999999876532         11111111  


Q ss_pred             ----------c-cChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCccccC
Q 033515           60 ----------V-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCT  106 (117)
Q Consensus        60 ----------~-~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~~  106 (117)
                                | .|.+ |..++..|..   .+||++|++|+|||.+|.. .+.|++++.
T Consensus        86 i~~d~~vV~yC~~G~~-As~~~~~l~~---~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          86 ITKDKDIVVYCRIAER-SSHSWFVLKY---LLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             CCTTSEEEEECSSHHH-HHHHHHHHHT---TSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             CCCCCeEEEEecCcch-HHHHHHHHHH---HcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence                      3 3555 4333433332   2799999999999999966 699999875

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.3e-18  Score=104.23  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=64.7

Q ss_pred             ccCHHHHHhhhcCC--CeEEEecCCCCcccCCcccccccCCccchhHH-----HHHH-h--------hh----------c
Q 033515            7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-----IFDL-I--------QE----------V   60 (117)
Q Consensus         7 ~is~~e~~~~~~~~--~~~iiDvR~~~e~~~ghIpga~~ip~~~l~~~-----~~~~-~--------~~----------~   60 (117)
                      .|+++||.++++++  +++|||||+..||..+|||||+|||...+...     +... .        ..          .
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            58999999999753  58999999999999999999999998766421     1110 0        00          1


Q ss_pred             cCh-h--hhHHHHHHHHHHH-----HhCCCceEEEccccHHHHHhCCCCcc
Q 033515           61 RGP-T--CAKRLANYLDEVK-----EDTGINSIFVLERGFKGWEASGKPVC  103 (117)
Q Consensus        61 ~g~-~--~a~~~~~~l~~~l-----~~~G~~~v~~l~gG~~~W~~~g~~~~  103 (117)
                      .+. .  ++......+.+.|     ...|..+|++|+||+.+|.......+
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~yp~~c  132 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYT  132 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHHCGGGB
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHhChhhc
Confidence            111 1  0111122222222     23577899999999999998865544

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1e-17  Score=101.18  Aligned_cols=84  Identities=19%  Similarity=0.309  Sum_probs=62.9

Q ss_pred             ccCHHHHHhhhcCCCeEEEecCCCCccc-----------CCcccccccCCccchhH--------HHH-HHhhh-------
Q 033515            7 YISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFTD--------KIF-DLIQE-------   59 (117)
Q Consensus         7 ~is~~e~~~~~~~~~~~iiDvR~~~e~~-----------~ghIpga~~ip~~~l~~--------~~~-~~~~~-------   59 (117)
                      .++.+|+..+++.++.+|||+|++++|.           .||||||+|+|...+..        .+. .+...       
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            4688999998888889999999999984           79999999999765431        111 11111       


Q ss_pred             -----ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHH
Q 033515           60 -----VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW   95 (117)
Q Consensus        60 -----~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W   95 (117)
                           .+|.+ |..++..|..    +||++|++|+|||.+|
T Consensus        85 ii~yC~sG~~-A~~~~~~L~~----lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGVT-AAVVLLALAT----LDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSST-HHHHHHHHHH----TTCSSCEEECCSCCC-
T ss_pred             eEEEccchhH-HHHHHHHHHH----cCCCCceEcCCChhhC
Confidence                 45777 5555666665    9999999999999998

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.64  E-value=5.8e-18  Score=105.00  Aligned_cols=82  Identities=21%  Similarity=0.337  Sum_probs=58.8

Q ss_pred             CCCeEEEecCCCCccc-----------CCcccccccCCccchhH------------HHH-HHhh------------h---
Q 033515           19 RPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFTD------------KIF-DLIQ------------E---   59 (117)
Q Consensus        19 ~~~~~iiDvR~~~e~~-----------~ghIpga~~ip~~~l~~------------~~~-~~~~------------~---   59 (117)
                      .++++|||+|+++||.           .||||||+|+|...+..            .+. .+..            .   
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~   89 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF   89 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEE
Confidence            3689999999999886           79999999999754310            111 1110            1   


Q ss_pred             --ccChhhhHHHHHHHHHHHHhCCCceEEEccccHHHHHh-CCCCcccc
Q 033515           60 --VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  105 (117)
Q Consensus        60 --~~g~~~a~~~~~~l~~~l~~~G~~~v~~l~gG~~~W~~-~g~~~~~~  105 (117)
                        .+|.+ |..++..|..    +||++|++|+|||.+|.+ .+.|++++
T Consensus        90 yC~sG~~-Aa~~~~~L~~----~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          90 SCGSGVT-ACINIALVHH----LGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             ECSSSST-HHHHHHHHHH----TTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             ECCCcHH-HHHHHHHHHH----hCCCCccCCCCCHHHHhCCCCCCeeec
Confidence              45766 4445555555    999999999999999965 57888764

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-16  Score=99.42  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=37.9

Q ss_pred             cccCHHHHHhhhc--CCCeEEEecCCCCcccCCcccccccCCccch
Q 033515            6 SYISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSF   49 (117)
Q Consensus         6 ~~is~~e~~~~~~--~~~~~iiDvR~~~e~~~ghIpga~~ip~~~l   49 (117)
                      ..+|++++++.++  ++++.|||||++.||..||||||+|+|...+
T Consensus        16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~   61 (154)
T d1hzma_          16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGI   61 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSH
T ss_pred             CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHH
Confidence            4588999999886  4578999999999999999999999987543