Citrus Sinensis ID: 033541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MTPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL
Secondary Structure (PSIPRED)
cccEEEEcEEEEEEccccccccccEEEEcccccccEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEccccccccccEEEccccEEEEEEEEEccccccccEEEEEEEEcccEEEEEEcccccccEccccccccccccccccccccccccHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MTPLIWICVQVKkhikggegheggiftveapihasnvqvldpvtgkpckvgtkyledgtKVRVArgigasgsiiprpeilkirttprptvagpkdtpvdLVMKKtydaksgkgmpdl
Flexible Loop (DISEMBL)
MTPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASnvqvldpvtgkpCKVGtkyledgtkvrvargigasgsiiprpeilkirttprptvagpkdtpvdlvmkktydaksgkgmpdl
Low Complexity Region (SEG)
MTPLIWICVQVkkhikggegheggiFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL
Disordered region (IsUnstruct)
***LIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIR**********************************
Disordered Region (DISOPRED)
MTPLIWICVQVKK**************VEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIRTT****VAGPKDTPVDLVMKKTYDAKSGKGMP**
Disordered Region (DISEMBL)
MTPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYD**********
Disordered Region (DISPRO)
MTPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKI*****PT*AGPKDTPVDLVMKKTYDAKS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
A8F2D6	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	4e-12
C4K2G8	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	4e-12
Q92GX7	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	4e-12
C3PP96	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	4e-12
Q9ZCR6	113	50S ribosomal protein L24	yes	no	0.521	0.539	0.578	8e-12
Q68W89	113	50S ribosomal protein L24	yes	no	0.538	0.557	0.560	1e-11
Q4UMR8	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	1e-11
A8GT58	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	1e-11
B0BUP9	109	50S ribosomal protein L24	yes	no	0.521	0.559	0.578	1e-11
A0L5Y4	112	50S ribosomal protein L24	yes	no	0.555	0.580	0.507	3e-11

>sp|A8F2D6|RL24_RICM5 50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) GN=rplX PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKSNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
Rickettsia massiliae (strain Mtu5) (taxid: 416276)

>sp|C4K2G8|RL24_RICPU 50S ribosomal protein L24 OS=Rickettsia peacockii (strain Rustic) GN=rplX PE=3 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKSNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia peacockii (strain Rustic) (taxid: 562019)

>sp|Q92GX7|RL24_RICCN 50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rplX PE=3 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKSNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|C3PP96|RL24_RICAE 50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) GN=rplX PE=3 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKSNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia africae (strain ESF-5) (taxid: 347255)

>sp|Q9ZCR6|RL24_RICPR 50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) GN=rplX PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E+PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKPNKMSEGGIITQESPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q68W89|RL24_RICTY 50S ribosomal protein L24 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rplX PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E+PIH SNV  +DP TG P KV  K+LEDG+KVR+A+    S
Sbjct: 44  VKKHTKPNKMSEGGIITKESPIHISNVAHIDPKTGNPTKVAFKFLEDGSKVRIAK---KS 100

Query: 71  GSIIPR 76
           G II +
Sbjct: 101 GEIIGK 106

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

>sp|Q4UMR8|RL24_RICFE 50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rplX PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKPNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|A8GT58|RL24_RICRS 50S ribosomal protein L24 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplX PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKPNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia rickettsii (strain Sheila Smith) (taxid: 392021)

>sp|B0BUP9|RL24_RICRO 50S ribosomal protein L24 OS=Rickettsia rickettsii (strain Iowa) GN=rplX PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKH K  +  EGGI T E PIH SN+  +DP TG P KV  K+LEDG+KVRVA+    S
Sbjct: 44  VKKHTKPNQMSEGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KS 100

Query: 71  GSII 74
           G II
Sbjct: 101 GEII 104

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Rickettsia rickettsii (strain Iowa) (taxid: 452659)

>sp|A0L5Y4|RL24_MAGSM 50S ribosomal protein L24 OS=Magnetococcus sp. (strain MC-1) GN=rplX PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query: 4   LIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRV 63
           L+     +K+H K  +  EGGI   EAPIH SNV ++DP TGK  ++  K LEDG KVRV
Sbjct: 43  LVEKVNMIKRHTKPAQNREGGIVEKEAPIHISNVMIVDPATGKATRIKKKNLEDGRKVRV 102

Query: 64  ARGIG 68
           A G G
Sbjct: 103 AAGSG 107

One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.

Magnetococcus sp. (strain MC-1) (taxid: 156889)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
255584484	159	mitochondrial ribosomal protein L24, put	0.914	0.672	0.897	2e-49
224079013	159	predicted protein [Populus trichocarpa]	0.914	0.672	0.887	8e-49
388521335	159	unknown [Medicago truncatula]	0.914	0.672	0.878	9e-49
351727957	159	uncharacterized protein LOC100305917 [Gl	0.914	0.672	0.878	5e-48
388492602	159	unknown [Lotus japonicus]	0.914	0.672	0.850	3e-47
351720752	159	uncharacterized protein LOC100499816 [Gl	0.914	0.672	0.859	5e-47
255567548	159	mitochondrial ribosomal protein L24, put	0.914	0.672	0.822	7e-46
359479653	159	PREDICTED: 39S ribosomal protein L24, mi	0.914	0.672	0.831	2e-45
194462395	159	ribosomal protein L24 [Cucumis melo var.	0.914	0.672	0.822	2e-45
22327012	159	50S ribosomal protein L24-like protein [	0.914	0.672	0.831	2e-45

>gi|255584484|ref|XP_002532971.1| mitochondrial ribosomal protein L24, putative [Ricinus communis] gi|223527249|gb|EEF29408.1| mitochondrial ribosomal protein L24, putative [Ricinus communis]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/107 (89%), Positives = 104/107 (97%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK GEGHEGGIFTVEAP+HASNVQVLDPVTGKPCKVG +YLEDGTKVRV+RGIGAS
Sbjct: 53  VKKHIKAGEGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGYRYLEDGTKVRVSRGIGAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRTTPRPT AGPKDTP+DLV+++TYDAK+GKGMPDL
Sbjct: 113 GSIIPRPEILKIRTTPRPTEAGPKDTPIDLVLERTYDAKTGKGMPDL 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079013|ref|XP_002305718.1| predicted protein [Populus trichocarpa] gi|222848682|gb|EEE86229.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 104/107 (97%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK GEGHEGGIFTVEAP+HASNVQV+DPVTG+PCKVG +YLEDGTKVRV+RG G+S
Sbjct: 53  VKKHIKAGEGHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGIRYLEDGTKVRVSRGEGSS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRTTPRPTVAGPKDTP+DLV+KKTYDAK+GKGMPDL
Sbjct: 113 GSIIPRPEILKIRTTPRPTVAGPKDTPMDLVLKKTYDAKTGKGMPDL 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521335|gb|AFK48729.1| unknown [Medicago truncatula]

 Score =  197 bits (500), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 94/107 (87%), Positives = 106/107 (99%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK G+GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRV+RGIGAS
Sbjct: 53  VKKHIKQGQGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRTTPRP+VAGPKDTP+++V++KTYD+K+G+GMP+L
Sbjct: 113 GSIIPRPEILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727957|ref|NP_001238714.1| uncharacterized protein LOC100305917 [Glycine max] gi|255626969|gb|ACU13829.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/107 (87%), Positives = 104/107 (97%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK G+GHEGGIFTVEAPIHASNVQV+DPVT KPCKVGTKYLEDG+KVRV+RGIGAS
Sbjct: 53  VKKHIKQGQGHEGGIFTVEAPIHASNVQVIDPVTRKPCKVGTKYLEDGSKVRVSRGIGAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRTTPRPTV GPKDTP+DLV++KTYDAK+G+GMP+L
Sbjct: 113 GSIIPRPEILKIRTTPRPTVLGPKDTPMDLVLEKTYDAKTGRGMPEL 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492602|gb|AFK34367.1| unknown [Lotus japonicus]

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/107 (85%), Positives = 102/107 (95%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK G+GHEGGIFTVEAPIHASNVQV DPVTG PCK+G KYLEDGT+VRVARGIGAS
Sbjct: 53  VKKHIKQGQGHEGGIFTVEAPIHASNVQVRDPVTGNPCKIGIKYLEDGTRVRVARGIGAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRTTPRP+V GP+DTP+DLV++KTYDAK+G+GMP+L
Sbjct: 113 GSIIPRPEILKIRTTPRPSVLGPRDTPMDLVLEKTYDAKTGRGMPEL 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720752|ref|NP_001236419.1| uncharacterized protein LOC100499816 [Glycine max] gi|255626857|gb|ACU13773.1| unknown [Glycine max]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 102/107 (95%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK G+GHEGGI TVEAPIHASNVQVLDPVTGKPCK+G KYLEDGTKVRV+RGIG+S
Sbjct: 53  VKKHIKQGQGHEGGILTVEAPIHASNVQVLDPVTGKPCKIGHKYLEDGTKVRVSRGIGSS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEIL IRTTPRPTV GPKDTP+DLV++KTYDAK+G+GMP+L
Sbjct: 113 GSIIPRPEILMIRTTPRPTVLGPKDTPMDLVLEKTYDAKTGRGMPEL 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567548|ref|XP_002524753.1| mitochondrial ribosomal protein L24, putative [Ricinus communis] gi|223535937|gb|EEF37596.1| mitochondrial ribosomal protein L24, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 102/107 (95%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK GEGHEGGIFTVEAP+HASNVQVLDP TGKPCKVG +YLEDGTKVRV+RG GAS
Sbjct: 53  VKKHIKAGEGHEGGIFTVEAPVHASNVQVLDPGTGKPCKVGVRYLEDGTKVRVSRGQGAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRP+ILK+RTTPRP++AGPKDTP++LV+++TYD K+G+GMPDL
Sbjct: 113 GSIIPRPDILKMRTTPRPSIAGPKDTPMNLVLERTYDPKTGRGMPDL 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479653|ref|XP_003632319.1| PREDICTED: 39S ribosomal protein L24, mitochondrial-like [Vitis vinifera] gi|296085225|emb|CBI28720.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 100/107 (93%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK G+GHEGGIF+VEAP+HASNVQ+LDP T KP K+G +YLEDGTKVRV+RG GAS
Sbjct: 53  VKKHIKQGQGHEGGIFSVEAPLHASNVQILDPATQKPVKIGIRYLEDGTKVRVSRGQGAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRTTPRPTVAGPKDTP+DLV++KTYDAK+GKGMP L
Sbjct: 113 GSIIPRPEILKIRTTPRPTVAGPKDTPMDLVLEKTYDAKTGKGMPGL 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194462395|gb|ACF72672.1| ribosomal protein L24 [Cucumis melo var. cantalupensis]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 102/107 (95%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           VKKHIK G+GHEGGIFTVEAP+H SNVQV+DPVTGKPCKVG +YLEDG+KVRV+RG+ AS
Sbjct: 53  VKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVSRGLEAS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIRT+PRPTVAGPKDTP+D+V++KTYD K+GKGMP+L
Sbjct: 113 GSIIPRPEILKIRTSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 159

Source: Cucumis melo var. cantalupensis

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327012|ref|NP_680212.1| 50S ribosomal protein L24-like protein [Arabidopsis thaliana] gi|297808355|ref|XP_002872061.1| KOW domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|8809706|dbj|BAA97247.1| 50S ribosomal protein L24 [Arabidopsis thaliana] gi|44681334|gb|AAS47607.1| At5g23535 [Arabidopsis thaliana] gi|45773844|gb|AAS76726.1| At5g23535 [Arabidopsis thaliana] gi|110735795|dbj|BAE99874.1| 50S ribosomal protein L24 [Arabidopsis thaliana] gi|297317898|gb|EFH48320.1| KOW domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|332005797|gb|AED93180.1| 50S ribosomal protein L24-like protein [Arabidopsis thaliana]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 98/107 (91%)

Query: 11  VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           +KKHIKGG  HEGGIFTVEAP+HASNVQV+DPVTG+PCKVG KYLEDGTKVRVARG G S
Sbjct: 53  IKKHIKGGPDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTS 112

Query: 71  GSIIPRPEILKIRTTPRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
           GSIIPRPEILKIR TPRPT AGPKDTP++ V ++TYDAK+GKGMPDL
Sbjct: 113 GSIIPRPEILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:504954880	159	AT5G23535 [Arabidopsis thalian	0.786	0.578	0.836	3.7e-39
DICTYBASE|DDB_G0269640	164	DDB_G0269640 "39S ribosomal pr	0.666	0.475	0.409	3.2e-10
UNIPROTKB|Q3SYS0	216	MRPL24 "39S ribosomal protein	0.641	0.347	0.379	2.9e-09
UNIPROTKB|F1RHJ1	216	MRPL24 "Uncharacterized protei	0.641	0.347	0.392	6.2e-09
UNIPROTKB|Q96A35	216	MRPL24 "39S ribosomal protein	0.641	0.347	0.367	1.4e-08
MGI|MGI:1914957	216	Mrpl24 "mitochondrial ribosoma	0.641	0.347	0.379	1.4e-08
RGD|1359289	216	mrpl24 "mitochondrial ribosoma	0.641	0.347	0.379	1.4e-08
TIGR_CMR|BA_0121	103	BA_0121 "ribosomal protein L24	0.350	0.398	0.619	1.6e-08
TIGR_CMR|CHY_2298	107	CHY_2298 "ribosomal protein L2	0.358	0.392	0.571	5.3e-08
UNIPROTKB|E2QS97	219	MRPL24 "Uncharacterized protei	0.641	0.342	0.365	1.4e-07

TAIR|locus:504954880 AT5G23535 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 77/92 (83%), Positives = 85/92 (92%)

Query:    26 FTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIRTT 85
             FTVEAP+HASNVQV+DPVTG+PCKVG KYLEDGTKVRVARG G SGSIIPRPEILKIR T
Sbjct:    68 FTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPEILKIRAT 127

Query:    86 PRPTVAGPKDTPVDLVMKKTYDAKSGKGMPDL 117
             PRPT AGPKDTP++ V ++TYDAK+GKGMPDL
Sbjct:   128 PRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

DICTYBASE|DDB_G0269640 DDB_G0269640 "39S ribosomal protein L24, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 34/83 (40%), Positives = 49/83 (59%)

Query:    26 FTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEI-LKIRT 84
             +T EAPIH SN+  +DP    PCKV  + L DG + RV++    S SII +P++    + 
Sbjct:    74 YTKEAPIHYSNISHIDPKYNVPCKVRFQ-LVDGARERVSK---ISNSIIAKPDLSANFKK 129

Query:    85 TPRPTVAGPKDTPVDLVMKKTYD 107
               R  V GP DT  ++V K+T+D
Sbjct:   130 WRRDNVEGPYDTTPEIVKKRTFD 152

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q3SYS0 MRPL24 "39S ribosomal protein L24, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 30/79 (37%), Positives = 49/79 (62%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIR-TTPR 87
             EAP+  + V+++DP+  KP +V  ++ E G +VRV+     SG IIP+P++ +     P 
Sbjct:   112 EAPLLHNQVKLVDPMDRKPTEVEWRFTEAGERVRVST---RSGRIIPKPDVPRADGIVPE 168

Query:    88 PTVAGPKDTPVDLVMKKTY 106
               + GPKDT V+  ++KTY
Sbjct:   169 TWIDGPKDTSVEDALEKTY 187

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RHJ1 MRPL24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 31/79 (39%), Positives = 46/79 (58%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIR-TTPR 87
             EAP+  + V+++DP   KP  V  ++ E G +VRV+     SG IIP+PE  +     P 
Sbjct:   112 EAPLLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVST---RSGRIIPKPEFPRADGIVPE 168

Query:    88 PTVAGPKDTPVDLVMKKTY 106
               + GPKDT V+  ++KTY
Sbjct:   169 TWIDGPKDTSVEDALEKTY 187

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q96A35 MRPL24 "39S ribosomal protein L24, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIR-TTPR 87
             EAP+    V+++DP+  KP ++  ++ E G +VRV+     SG IIP+PE  +     P 
Sbjct:   112 EAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVST---RSGRIIPKPEFPRADGIVPE 168

Query:    88 PTVAGPKDTPVDLVMKKTY 106
               + GPKDT V+  +++TY
Sbjct:   169 TWIDGPKDTSVEDALERTY 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1914957 Mrpl24 "mitochondrial ribosomal protein L24" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 30/79 (37%), Positives = 46/79 (58%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIR-TTPR 87
             EAP+    V+++DPV  KP ++  ++ E G +VRV+     SG IIP+PE  +     P 
Sbjct:   112 EAPLLHHQVKLVDPVDRKPTEIQWRFTEAGERVRVST---RSGRIIPKPEFPRADGIVPE 168

Query:    88 PTVAGPKDTPVDLVMKKTY 106
                 GPKDT V+  +++TY
Sbjct:   169 TWTDGPKDTSVEDALERTY 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1359289 mrpl24 "mitochondrial ribosomal protein L24" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 30/79 (37%), Positives = 46/79 (58%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILKIR-TTPR 87
             EAP+    V+++DPV  KP ++  ++ E G +VRV+     SG IIP+PE  +     P 
Sbjct:   112 EAPLLHHQVKLVDPVDRKPTEIQWRFTEAGERVRVST---RSGRIIPKPEFPRADGIVPE 168

Query:    88 PTVAGPKDTPVDLVMKKTY 106
                 GPKDT V+  +++TY
Sbjct:   169 TWTDGPKDTSVEDALERTY 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TIGR_CMR|BA_0121 BA_0121 "ribosomal protein L24" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query:    27 TVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIG 68
             T EAPIH SNV +LDP TG+P +VG K +EDG KVR+A+  G
Sbjct:    58 TKEAPIHVSNVMILDPKTGEPTRVGFK-VEDGKKVRIAKKSG 98

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_2298 CHY_2298 "ribosomal protein L24" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 24/42 (57%), Positives = 29/42 (69%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
             EAPIH SNV V+ P  GKP +VG K+L DG K+RV +  G S
Sbjct:    63 EAPIHVSNVMVICPSCGKPTRVGKKFLADGKKIRVCKKCGES 104

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|E2QS97 MRPL24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 122 (48.0 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/82 (36%), Positives = 48/82 (58%)

Query:    29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEILK----IRT 84
             EAP+    V+++DPV  KP +V  ++ E G +VRV+     SG IIP+P+  +    +  
Sbjct:   112 EAPLLHHQVKLVDPVDRKPTEVEWRFTEAGERVRVS---SRSGRIIPKPDFPRADGIVPE 168

Query:    85 TPRPTVAGPKDTPVDLVMKKTY 106
             T   +  GPKDT V+  +++TY
Sbjct:   169 TWTGSTDGPKDTSVEDALERTY 190

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_IV0116	hypothetical protein (160 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	rpl22	50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)	•			•	•		•		0.986
	eugene3.00141000	hypothetical protein (227 aa)	•			•	•		•		0.985
	fgenesh4_pg.C_scaffold_166000032	hypothetical protein (285 aa)	•			•	•		•		0.975
	estExt_Genewise1_v1.C_LG_X3691	SubName- Full=Putative uncharacterized protein; (165 aa)	•		•	•	•		•		0.973
	estExt_fgenesh4_pg.C_13160002	hypothetical protein (165 aa)	•		•	•	•		•		0.972
	fgenesh4_pm.C_LG_XIII000297	hypothetical protein (222 aa)	•			•	•		•		0.972
	gw1.16155.2.1	Predicted protein (206 aa)	•			•			•		0.970
	gw1.II.2942.1	SubName- Full=Putative uncharacterized protein; (218 aa)	•			•	•		•		0.970
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)	•			•			•		0.968
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•			•		0.966

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
PRK00004	105	PRK00004, rplX, 50S ribosomal protein L24; Reviewe	6e-19
TIGR01079	104	TIGR01079, rplX_bact, ribosomal protein L24, bacte	1e-13
COG0198	104	COG0198, RplX, Ribosomal protein L24 [Translation,	6e-09
cd06089	65	cd06089, KOW_RPL26, KOW motif of Ribosomal Protein	1e-04

>gnl|CDD|234566 PRK00004, rplX, 50S ribosomal protein L24; Reviewed

 Score = 74.8 bits (185), Expect = 6e-19
 Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 11  VKKHIK-GGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGA 69
           VKKH K   E  +GGI   EAPIH SNV ++DP TGK  +VG K+LEDG KVRVA+    
Sbjct: 43  VKKHQKPNQENPQGGIIEKEAPIHISNVALVDPKTGKATRVGFKFLEDGKKVRVAKK--- 99

Query: 70  SGSII 74
           SG +I
Sbjct: 100 SGEVI 104

Length = 105

>gnl|CDD|233263 TIGR01079, rplX_bact, ribosomal protein L24, bacterial/organelle

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 11  VKKHIKGGE--GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIG 68
           VKKH+K       +GGI   EAPIH SNV + DP TGK  +VG ++ EDG KVRV +   
Sbjct: 42  VKKHVKPKPTQRSQGGIIEKEAPIHISNVMLFDPKTGKATRVGIRFEEDGKKVRVFK--- 98

Query: 69  ASGSII 74
            +G II
Sbjct: 99  KTGEII 104

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 104

>gnl|CDD|223276 COG0198, RplX, Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

 Score = 49.2 bits (118), Expect = 6e-09
 Identities = 36/57 (63%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 11 VKKHIKG-GEGHEGGIFTVEAPIHASNVQVLDPV-TGKPCKVGTKYLEDGTKVRVAR 65
          VKKHIK   E  EGGI   EAPIH SNV ++DP  TGKP +VG K  EDG KVRVA+
Sbjct: 41 VKKHIKPSQENPEGGIINKEAPIHISNVAIIDPNKTGKPTRVGYKVEEDGKKVRVAK 97

Length = 104

>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 11 VKKHIK-GGEGHEGGIFTVEAPIHASNVQV 39
          VKKH+K   E  +GGI  VEAPIH SNV +
Sbjct: 36 VKKHVKPSQENPQGGIIEVEAPIHISNVML 65

RPL26 and its bacterial paralogs RPL24 have a KOW motif at their N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. RPL26 makes a very minor contributions to the biogenesis, structure, and function of 60s ribosomal subunits. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG1708	236	consensus Mitochondrial/chloroplast ribosomal prot	99.96
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	99.93
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	99.92
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	99.9
CHL00141	83	rpl24 ribosomal protein L24; Validated	99.59
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	99.47
PTZ00194	143	60S ribosomal protein L26; Provisional	98.82
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	98.72
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	98.4

>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.6e-29  Score=194.85  Aligned_cols=106  Identities=35%  Similarity=0.513  Sum_probs=98.9

Q ss_pred             cceEEeeeeEEEeecCCC-CCCCceEEEeecccccc-eeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCceecCccc
Q 033541            2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASN-VQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEI   79 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSN-V~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~ip~P~~   79 (117)
                      .|||+|+|.-.||++... +.+|.|+..|||||+|| |||+||.+.++|+++|+|+++|.||||+.   +||++||+|..
T Consensus       102 ~VvV~gln~k~r~~gsekeg~pgtivk~EaPlhvsk~VmLvdp~d~q~te~~wr~~e~GekVRvst---rSG~iIpipe~  178 (236)
T KOG1708|consen  102 WVVVKGLNTKYRHMGSEKEGEPGTIVKSEAPLHVSKQVMLVDPEDDQPTEVEWRFTEDGEKVRVST---RSGRIIPIPEK  178 (236)
T ss_pred             eEEEcccchhhhhhcccccCCCceEEeecCCceecceeEEECccccCCceeeEEEcCCCcEEEEEe---cccccccCccc
Confidence            589999999999999986 58999999999999999 99999999999999999999999999999   89999999999


Q ss_pred             ccccc-CCCCCCCCC-CCCCHHHhhhhccccCC
Q 033541           80 LKIRT-TPRPTVAGP-KDTPVDLVMKKTYDAKS  110 (117)
Q Consensus        80 ~~~~~-~p~~~~~g~-kDT~~e~v~~~Ty~p~~  110 (117)
                      +.... .|+.|.|.+ |||++++|+++||.|.+
T Consensus       179 ~t~dy~~pe~yiE~e~KdTp~~av~erTy~pkl  211 (236)
T KOG1708|consen  179 WTADYIKPELYIEAEDKDTPQVAVLERTYVPKL  211 (236)
T ss_pred             ccccccCchheeecccCCCcHhhhhhhhcchhH
Confidence            62222 899999997 99999999999999986

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=99.93  E-value=2.5e-26  Score=161.71  Aligned_cols=70  Identities=47%  Similarity=0.709  Sum_probs=64.1

Q ss_pred             cceEEeeeeEEEeecCCCC-C-CCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541            2 TPLIWICVQVKKHIKGGEG-H-EGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII   74 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~-~-~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i   74 (117)
                      +++|||+||+++|+|+++. . +|||+++|+|||+|||||+||+|++|+||+|++++||+|+|+|++   ||++|
T Consensus        33 ~V~VegvN~~kkh~k~~~~~~~~g~i~~~e~pI~~SnV~lv~p~~~k~~rv~~~~~~~g~kvRv~k~---~g~~i  104 (104)
T TIGR01079        33 KVIVEGVNMVKKHVKPKPTQRSQGGIIEKEAPIHISNVMLFDPKTGKATRVGIRFEEDGKKVRVFKK---TGEII  104 (104)
T ss_pred             EEEECCcEEEEEecCcccCCCCCCceEEEEccCCHHHeEEEcCcCCCCeEEEEEEccCCcEEEEEec---cCCcC
Confidence            6899999999999999874 4 799999999999999999999999999999999999999999995   55543

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=99.92  E-value=3.6e-25  Score=155.91  Aligned_cols=71  Identities=51%  Similarity=0.728  Sum_probs=65.4

Q ss_pred             CcceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541            1 MTPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII   74 (117)
Q Consensus         1 ~~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i   74 (117)
                      .+++|||||++++|+|+++ +.+|||+++|+|||+|||||+||.+++|+||+|++++||+|+|+|++   ||+.|
T Consensus        33 ~~V~Vegvn~~k~h~k~~~~~~~G~i~~~e~pI~~SnV~lv~p~~~~~~rv~~~~~~~g~kvRv~k~---~g~~i  104 (105)
T PRK00004         33 NKVIVEGVNIVKKHQKPNQENPQGGIIEKEAPIHISNVALVDPKTGKATRVGFKFLEDGKKVRVAKK---SGEVI  104 (105)
T ss_pred             CEEEEcCcEEEEEecCCCCCCCCCceEEEECCcCHHHEEEEeCcCCCCeEEEEEEccCCcEEEEEec---CCCCc
Confidence            3689999999999999987 67899999999999999999999999999999999999999999995   55554

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=5.3e-24  Score=150.14  Aligned_cols=69  Identities=57%  Similarity=0.791  Sum_probs=62.7

Q ss_pred             ceEEeeeeEEEeecCC-CCCCCceEEEeecccccceeeecC-CCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541            3 PLIWICVQVKKHIKGG-EGHEGGIFTVEAPIHASNVQVLDP-VTGKPCKVGTKYLEDGTKVRVARGIGASGSII   74 (117)
Q Consensus         3 ~~v~GvN~vkKHvK~~-~~~~GgIi~~E~PIhiSNV~Lvdp-~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i   74 (117)
                      ++|||||++|+|+|++ ++++|||+++|+|||+|||||+|+ ++++++|++|++.+||+|+|++++   ||..|
T Consensus        33 V~VEGvnv~kkh~k~~~~~~~ggii~~EapIh~SnV~i~~~~~~~~~~Rv~~~~~~~~kkvr~~Kk---~g~~i  103 (104)
T COG0198          33 VVVEGVNVVKKHIKPSQENPEGGIINKEAPIHISNVAIIDPNKTGKPTRVGYKVEEDGKKVRVAKK---SGEVI  103 (104)
T ss_pred             EEEECcEEEEecCCCCCcCCCCceeeeeecccHHHeEEeccccCCCcceEEEEEecCCcEEEEEec---cCccc
Confidence            7999999999999965 467899999999999999999999 799999999999889999999994   55554

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=99.59  E-value=1e-15  Score=103.98  Aligned_cols=45  Identities=31%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             CcceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCC
Q 033541            1 MTPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTG   45 (117)
Q Consensus         1 ~~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~   45 (117)
                      .+++|||+|++++|+|+++ +.+||++++|+|||+|||+|+||+|+
T Consensus        37 ~~V~Vegvn~~~k~~k~~~~~~~g~i~~~e~pI~~SnV~lvdp~~~   82 (83)
T CHL00141         37 NKVIVKGINIKFKHIKPNKENEVGEIKQFEAPIHSSNVMLYNEESN   82 (83)
T ss_pred             CEEEEcCcEEEEEEcCCccCCCCCCEEEEECCCCHHHEEEeCcccC
Confidence            3689999999999999986 56899999999999999999999885

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=99.47  E-value=2.5e-14  Score=95.77  Aligned_cols=40  Identities=33%  Similarity=0.393  Sum_probs=36.7

Q ss_pred             CcceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeee
Q 033541            1 MTPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVL   40 (117)
Q Consensus         1 ~~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lv   40 (117)
                      ++++|||||+++||+||++ +.+|||+++|+|||+|||||+
T Consensus        35 ~~V~Vegvn~~kkh~kp~~~~~~G~i~~~e~pI~~SnV~l~   75 (76)
T PRK12281         35 NRVIVEGVKIAKKAIKPSQKNPNGGFIEKEMPIHISNVKKV   75 (76)
T ss_pred             CEEEEcCcEEEEEEcCCCccCCCCCEEEEEcCcCHHHceec
Confidence            3689999999999999997 457999999999999999996

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=98.82  E-value=1.6e-09  Score=80.30  Aligned_cols=36  Identities=25%  Similarity=0.105  Sum_probs=32.5

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCc
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKP   47 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~   47 (117)
                      +++|||||++|+|.++          +|+|||+|||||+|+..+..
T Consensus        76 ~ViVEgvn~~Kk~gk~----------~e~PIh~SNV~iv~l~l~~~  111 (143)
T PTZ00194         76 VIHIEKITREKANGEP----------VQIGIHPSNVIITKLKLNKD  111 (143)
T ss_pred             EEEEeCeEEEecCCCE----------eecCcCchheEEEccccCch
Confidence            6899999999999876          79999999999999977655

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=98.72  E-value=5.9e-09  Score=75.39  Aligned_cols=35  Identities=26%  Similarity=0.225  Sum_probs=29.8

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK   46 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k   46 (117)
                      +++|||||++|+        +|  +++|+|||+|||||+|..-+.
T Consensus        75 ~V~VeGvn~~k~--------~G--~~~e~pIh~SNV~l~~l~l~~  109 (120)
T PRK01191         75 RIYVEGVTVKKA--------DG--TEVPRPIHPSNVMITKLDLSD  109 (120)
T ss_pred             EEEEeCcEEECC--------CC--eEEEcccchhHeEEEeCccCC
Confidence            689999999983        35  799999999999999986543

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=98.40  E-value=1.3e-07  Score=67.83  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK   46 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k   46 (117)
                      +++|||||++|    +    .|  ++.|+|||+|||||+|-.-+.
T Consensus        71 ~V~Vegvn~~k----~----~G--~~~e~pIh~SnV~l~~l~l~~  105 (114)
T TIGR01080        71 RIYVEGVTKEK----V----NG--TEVPVPIHPSNVMITKLNLDD  105 (114)
T ss_pred             EEEEcCeEEEC----C----CC--eEEEeeechHHeEEEeccCCh
Confidence            58999999998    2    14  799999999999999875543

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
2j01_Y	110	Structure Of The Thermus Thermophilus 70s Ribosome		2e-05
3mrz_U	109	Recognition Of The Amber Stop Codon By Release Fact		3e-05
3tve_U	102	Crystal Structure Analysis Of Ribosomal Decoding. T		3e-05
3pyo_U	100	Crystal Structure Of A Complex Containing Domain 3		4e-05
3fin_Y	101	T. Thermophilus 70s Ribosome In Complex With Mrna,		4e-05

>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 110

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 29  EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           EAP+HAS V+ + P  GKP +V  K+LE+G K+RV    G +
Sbjct: 64  EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGA 105

>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 29  EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
           EAP+HAS V+ + P  GKP +V  K+LE+G K+RV    G +
Sbjct: 63  EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGA 104

>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 29  EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIG 68
           EAP+HAS V+ + P  GKP +V  K+LE+G K+RV    G
Sbjct: 63  EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCG 102

>pdb|3PYO|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRV 63
          EAP+HAS V+ + P  GKP +V  K+LE+G K+RV
Sbjct: 63 EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRV 97

>pdb|3FIN|Y Chain Y, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 101

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 29 EAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVA 64
          EAP+HAS V+ + P  GKP +V  K+LE+G K+RV 
Sbjct: 63 EAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVC 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	2e-27
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	7e-22
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	6e-19
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	1e-16
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	3e-16

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 191

 Score = 98.4 bits (245), Expect = 2e-27
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 11  VKKHIK-GGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGA 69
             KH+K   EG +G I  +EA IH+SNV ++        +VG K LED  KVR       
Sbjct: 107 KTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLI---K 163

Query: 70  SGSIIPRPEILKIRTTPRPTVAGPKDT 96
           +G I+  P+  K     + +       
Sbjct: 164 TGEIVDTPDRWKEIQNKKESETAVAVA 190

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Length = 96

 Score = 81.8 bits (203), Expect = 7e-22
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 11 VKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS 70
            ++I     + G +   EAP+    V+++DP+  KP ++  ++ E G +VRV+     S
Sbjct: 36 HYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVST---RS 92

Query: 71 GSII 74
          G II
Sbjct: 93 GRII 96

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Length = 110

 Score = 74.5 bits (184), Expect = 6e-19
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 11  VKKHIK-GGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGA 69
           VKK ++   +  +GG    EAP+HAS V+ + P  GKP +V  K+LE+G K+RV      
Sbjct: 45  VKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCA---K 101

Query: 70  SGSIIPRPE 78
            G  +   E
Sbjct: 102 CGGALDTEE 110

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U ... Length = 102

 Score = 68.3 bits (168), Expect = 1e-16
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 11  VKKHIK--GGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIG 68
           VKKH K        GGI   EA I  SNV + +  TGK  +VG +  EDG KVR  +   
Sbjct: 41  VKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFK--- 96

Query: 69  ASGSII 74
           ++   I
Sbjct: 97  SNSETI 102

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Length = 115

 Score = 67.6 bits (166), Expect = 3e-16
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 11  VKKHIK-GGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGA 69
           + K++K      +GG    E  +HAS V ++DP TGK  +V  + + DG KVRVA    A
Sbjct: 54  ITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQ-IVDGKKVRVAV---A 109

Query: 70  SGSII 74
           SG  I
Sbjct: 110 SGKTI 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	99.96
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	99.96
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	99.95
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	99.93
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	99.92
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	99.23
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	99.05
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	98.89
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	98.82
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	98.74
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	98.73

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=99.96  E-value=2.4e-30  Score=182.91  Aligned_cols=74  Identities=35%  Similarity=0.555  Sum_probs=67.9

Q ss_pred             cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCceecCcc
Q 033541            2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPE   78 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~ip~P~   78 (117)
                      +++|||||+++||+||++ +.+|||+++|+|||+|||||+||++++|+||+|++++||+|+|||+   +||++|+.|.
T Consensus        36 ~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~tRvg~~~~edG~kvRv~k---k~g~~i~~~~  110 (110)
T 3v2d_Y           36 AVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCA---KCGGALDTEE  110 (110)
T ss_dssp             EEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSBCCEEEEECSSCCEEEEES---SSCCBCC---
T ss_pred             EEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCccEEEEEECCCCcEEEEEe---cCCCccCCCC
Confidence            689999999999999997 5799999999999999999999999999999999999999999999   6789998763

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=99.96  E-value=7.4e-30  Score=176.60  Aligned_cols=70  Identities=27%  Similarity=0.391  Sum_probs=65.6

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII   74 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i   74 (117)
                      +++|||||+++||+||+++++|||+++|+|||+|||||+||++++|+||+|++++||+|+|||++   ||++|
T Consensus        27 ~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~~~dg~kvR~~kk---~g~~i   96 (96)
T 2ftc_N           27 WVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTR---SGRII   96 (96)
T ss_pred             EEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEEccCCcEEEEEec---cCCCC
Confidence            68999999999999999888999999999999999999999999999999999999999999995   55554

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=99.95  E-value=6e-29  Score=173.69  Aligned_cols=69  Identities=38%  Similarity=0.507  Sum_probs=64.5

Q ss_pred             cceEEeeeeEEEeecCCC--CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541            2 TPLIWICVQVKKHIKGGE--GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII   74 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~--~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i   74 (117)
                      +++|||||++++|+||++  +++|||+++|+|||+|||||+||+|++||||+|+ ++||+|+|||+   +||++|
T Consensus        32 ~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~trvg~~-~edG~kvRv~k---~~g~~i  102 (102)
T 3r8s_U           32 KVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFK---SNSETI  102 (102)
T ss_dssp             EEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEECEEEE-EETTEEEEEET---TTTEEC
T ss_pred             EEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCceEEEEE-eCCCeEEEEEe---ecCcCC
Confidence            689999999999999987  7899999999999999999999999999999999 69999999999   566664

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.93  E-value=3.5e-28  Score=185.38  Aligned_cols=75  Identities=37%  Similarity=0.463  Sum_probs=70.1

Q ss_pred             cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCceecCccc
Q 033541            2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSIIPRPEI   79 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~ip~P~~   79 (117)
                      +++|||||+++||+|+++ +++|||+++|+|||+|||||+||+|++++||+|++++||+|+|||+   +||++|+.|+.
T Consensus        98 rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~edGkKVRv~K---ksGe~I~~p~~  173 (191)
T 3bbo_W           98 TVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLI---KTGEIVDTPDR  173 (191)
T ss_dssp             CCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSCCCCCSSSC---CSSSCCCCCC-
T ss_pred             EEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccCCCceEEEEEEccCCcEEEEEe---cCCCCcCChhH
Confidence            689999999999999986 6789999999999999999999999999999999989999999999   67899988876

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=99.92  E-value=1.6e-27  Score=169.51  Aligned_cols=69  Identities=38%  Similarity=0.481  Sum_probs=63.9

Q ss_pred             cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCCCcee
Q 033541            2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGASGSII   74 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~sg~~i   74 (117)
                      +++|||||+++||+|+++ +++|||+++|+|||+|||||+||+++++|||+|++ +||+|+|||+   +||++|
T Consensus        45 ~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~~k~tRvg~~~-~dG~kvR~~k---k~g~~i  114 (115)
T 2zjr_R           45 KVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAV---ASGKTI  114 (115)
T ss_dssp             EEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCCCCCCC-SCTTSCCCCS---SSCCC-
T ss_pred             EEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccCCCceEEEEEE-cCCCEEEEEe---ecCCCc
Confidence            689999999999999987 67999999999999999999999999999999998 8999999999   566766

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=99.23  E-value=1.3e-12  Score=93.36  Aligned_cols=40  Identities=23%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEE
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVG   51 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~   51 (117)
                      +++|||||+ +|       ++||  ++|+|||+|||||+||++++++|++
T Consensus        72 ~V~VEgvn~-kK-------~~Gg--~~e~pIh~SNV~i~~~~~~k~~Rv~  111 (120)
T 1vq8_T           72 VIHVEDVTL-EK-------TDGE--EVPRPLDTSNVRVTDLDLEDEKREA  111 (120)
T ss_dssp             EEEETTCEE-EC-------SSSC--EEECCBCGGGEEEEECCCCCHHHHH
T ss_pred             EEEEeCeEe-Ec-------CCCC--EEEeeechHHEEEEeccCCCchhhe
Confidence            689999999 66       3677  9999999999999999999999987

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.05  E-value=2.7e-11  Score=86.56  Aligned_cols=41  Identities=22%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEE
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGT   52 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~   52 (117)
                      +++|||||++++|        |  .++|+|||+|||||+||+++.++|+++
T Consensus        75 ~V~VEgvn~~k~~--------G--~~~e~pIh~SNV~l~~~~~~d~~R~~~  115 (121)
T 3j21_U           75 RIYVEGATLRKTN--------G--TEVFYPIHPSNVMIIELNLEDEKRKKI  115 (121)
T ss_dssp             EEEETTCEEECSS--------S--CEEECCBCGGGEEEEECCCCCHHHHHH
T ss_pred             EEEEeCeEEEecC--------C--cEEEcccCHHHeEEEcCccCCcHHHHH
Confidence            6899999999864        3  389999999999999999999998764

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=98.89  E-value=2.9e-10  Score=83.41  Aligned_cols=48  Identities=33%  Similarity=0.255  Sum_probs=34.6

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEE
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVR   62 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvR   62 (117)
                      +++|||||+    +|++    |  +++|+|||+|||||+||+++++++   .+++...+.|
T Consensus        79 ~V~VEgvn~----~Kp~----G--~~~e~PIh~SNV~lv~~~~~k~~k---~~le~k~~~r  126 (145)
T 2zkr_t           79 VIYIERVQR----EKAN----G--TTVHVGIHPSKVVITRLKLDKDRK---KILERKAKSR  126 (145)
T ss_dssp             EEEETTCEE----ECSS----C--CEEECCBCGGGEEECC-CCCHHHH---HHHHC-----
T ss_pred             EEEEeeeEe----EcCC----C--ceEEeccCHHHEEEEcCcCCchHH---HHhhcccccc
Confidence            689999999    4553    4  899999999999999999999886   2345444333

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=98.74  E-value=2.4e-09  Score=77.00  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK   46 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k   46 (117)
                      +++|||||++|.        .|+  ++|+|||+|||||+|+++++
T Consensus        79 ~V~VEgVn~~K~--------~G~--~~e~pIh~SNV~i~~~~~dk  113 (127)
T 3u5e_Y           79 AVQVDKVTKEKV--------NGA--SVPINLHPSKLVITKLHLDK  113 (127)
T ss_dssp             EEEEETCEEECS--------SSC--EEECCBCGGGEEEEECCCCH
T ss_pred             EEEEeCeEEECC--------CCc--EEEcccchHHEEEEccccCc
Confidence            689999999863        243  88999999999999998863

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=98.73  E-value=3.1e-09  Score=77.18  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCC
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGK   46 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k   46 (117)
                      +++|||||++|.        .|  .++|+|||+|||||+|+++++
T Consensus        78 ~V~VEgVn~~K~--------~G--~~~e~pIh~SNV~i~~~k~dk  112 (135)
T 4a17_S           78 AIHVEKISKNKL--------NG--APYQIPLSASQLVLTKLKLDK  112 (135)
T ss_dssp             EEEETTCCEEET--------TT--EEECCCBCGGGEEEEECCCCH
T ss_pred             EEEEeCeEEEcC--------CC--CEEEcccchHHEEEEcccCCc
Confidence            689999999873        24  389999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d2j01y1	101	b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {	3e-14
d2gycs1	99	b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {	7e-14
d2zjrr1	110	b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {	2e-11
d1vqot1	119	b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {	7e-05

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Length = 101

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

 Score = 60.9 bits (148), Expect = 3e-14
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 10 QVKKHIKGGEGH-EGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 65
           VKK ++    + +GG    EAP+HAS V+ + P  GKP +V  K+LE+G K+RV  
Sbjct: 43 IVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCA 99

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Length = 99

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (146), Expect = 7e-14
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 8  CVQVKKHIKGG--EGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 65
             VKKH K        GGI   EA I  SNV + +  TGK  +VG ++ EDG KVR  +
Sbjct: 36 INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFK 94

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Length = 110

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 54.0 bits (130), Expect = 2e-11
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 10  QVKKHIKGG-EGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVAR 65
            + K++K      +GG    E  +HAS V ++DP TGK  +V  +   DG KVRVA 
Sbjct: 50  VITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAV 105

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 10/50 (20%)

Query: 10  QVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGT 59
             K   +           V  P+  SNV+V D       +      ED +
Sbjct: 79  LEKTDGE----------EVPRPLDTSNVRVTDLDLEDEKREARLESEDDS 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	99.94
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	99.94
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	99.93
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	99.05

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.94  E-value=1.8e-29  Score=176.77  Aligned_cols=68  Identities=34%  Similarity=0.447  Sum_probs=63.1

Q ss_pred             cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCC
Q 033541            2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS   70 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~s   70 (117)
                      +++||||||++||+||++ +++|||+++|+|||+|||||+||++++|+||+|++ +||+|+|||++|+.|
T Consensus        42 ~ViVeGvN~~kkh~Kp~~~~~~Ggiv~~E~PIhiSNV~lvdp~~~k~trv~~~~-~dGkKvRv~kksGes  110 (110)
T d2zjrr1          42 KVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAVASGKT  110 (110)
T ss_dssp             EEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCCCCCCC-SCTTSCCCCSSSCCC
T ss_pred             EEEEeCcEEEEEEecccccCCCCCeEeeeeeEEhhhEEEEcCCCCCceEEEEEE-eCCeEEEEEecCCCC
Confidence            689999999999999987 56899999999999999999999999999999987 789999999976654

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=6.1e-30  Score=176.78  Aligned_cols=66  Identities=36%  Similarity=0.556  Sum_probs=62.4

Q ss_pred             cceEEeeeeEEEeecCCC-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeec
Q 033541            2 TPLIWICVQVKKHIKGGE-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGI   67 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~   67 (117)
                      +++||||||++||+|+++ +++|||+++|+|||+|||||+||++++||||+|++++||+|+|+|++|
T Consensus        35 ~ViVeGvN~~kkh~k~~~~~~~Ggi~~~E~pIh~SNV~lv~~~~~k~trv~~~~~e~G~kvRv~kkc  101 (101)
T d2j01y1          35 AVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKC  101 (101)
T ss_dssp             BCCTTSCCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEECSSSSCCCCCEECTTSSCEECCTTTCC-
T ss_pred             EEEEEcceEEEEeecCCCCCCccceEEEEccccHHHeEEEeCCCCCcEEEEEEECCCCcEEEEEEcC
Confidence            689999999999999987 468999999999999999999999999999999999999999999987

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.3e-29  Score=173.38  Aligned_cols=68  Identities=37%  Similarity=0.500  Sum_probs=62.6

Q ss_pred             cceEEeeeeEEEeecCC-C-CCCCceEEEeecccccceeeecCCCCCceeEEEEEccCCcEEEEEeecCCC
Q 033541            2 TPLIWICVQVKKHIKGG-E-GHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVARGIGAS   70 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~-~-~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r~~edG~KvRv~k~~~~s   70 (117)
                      +++||||||++||+||+ + +++|||+++|+|||+|||||+||+|++||||+|++ +||+|+|||++|+.|
T Consensus        30 ~viVeGvN~~kkh~Kp~~~~~~~Ggiv~~E~pIh~SNV~lvd~~~~k~trvg~k~-edGkKvRv~kksget   99 (99)
T d2gycs1          30 KVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFKSNSET   99 (99)
T ss_dssp             EEEETTCCEECTTCCEECCCSCCCSSCCCSCCEETTTCCSSCSSCCSCCCCCCCC-TTSHHHHHHHSTTCC
T ss_pred             eEEEeCeEEEEEEeCCCCCcCCCCCEEEEEeeEEhhHEEEEcCcCCCceEEEEEE-ECCeEEEEEeeCCCC
Confidence            58999999999999985 3 67899999999999999999999999999999996 899999999977654

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.05  E-value=3.2e-12  Score=89.43  Aligned_cols=42  Identities=19%  Similarity=0.057  Sum_probs=37.8

Q ss_pred             cceEEeeeeEEEeecCCCCCCCceEEEeecccccceeeecCCCCCceeEEEE
Q 033541            2 TPLIWICVQVKKHIKGGEGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTK   53 (117)
Q Consensus         2 ~~~v~GvN~vkKHvK~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tRV~~r   53 (117)
                      +++|||||+.|+|.++          .|+|||+|||||+|+.+++++|+++.
T Consensus        71 ~V~Vegin~~k~~~k~----------~~~pIh~SNv~i~~~~~~~~~R~~~l  112 (119)
T d1vqot1          71 VIHVEDVTLEKTDGEE----------VPRPLDTSNVRVTDLDLEDEKREARL  112 (119)
T ss_dssp             EEEETTCEEECTTSCE----------EECCBCGGGEEEEECCCCSHHHHHHH
T ss_pred             EEEEeCcEEEecCCce----------eeccCchHHEEEEeCcCCcchhhhhh
Confidence            6899999999999774          68999999999999999999998753