Citrus Sinensis ID: 033564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccHEEccccEEEEEHEEHcccccccccccccccccEcEEEEcccccccHEHHHHEHHccccccccEEEccccccccccHHHHHHHHHHHccccccccccHHHHcccc
Coil and Loop (DISEMBL)
MRVVAYITQLpvaakwgnisyIHCLLlfplsgadlsdadlrSADFSLANVTKANlsnanlegalatgntsfrgsnitgadftdvplrddqREYLCKVadgvnpttgnatrdtllcn
Flexible Loop (DISEMBL)
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALAtgntsfrgsnitgadftdvplRDDQREYLCkvadgvnpttgnatrdtllcn
Low Complexity Region (SEG)
MRVVAYITQLPVAAKWGNISYIHCLLLFPlsgadlsdadlrsadfslaNVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN
Disordered region (IsUnstruct)
**VVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGV***************
Disordered Region (DISOPRED)
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLC*
Disordered Region (DISEMBL)
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN
Disordered Region (DISPRO)
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGV*************C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
O22160	224	Thylakoid lumenal 15 kDa	yes	no	0.75	0.388	0.885	5e-38
Q8H1Q1	280	Thylakoid lumenal protein	no	no	0.689	0.285	0.430	3e-06
Q9SE95	298	FH protein interacting pr	no	no	0.586	0.228	0.420	2e-05

>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/87 (88%), Positives = 81/87 (93%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLS+ADLR ADFSLANVTK NL+NANLEGA  TGNTSF+GSNITGADFTDVPLRDD
Sbjct: 138 LTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDD 197

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QR YLCKVADGVN TTGNATRDTLLCN
Sbjct: 198 QRVYLCKVADGVNATTGNATRDTLLCN 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
            SGADLSD  +   D  + N  +ANL+NA L  ++ T  +   G+ I GADF+D  +   
Sbjct: 161 FSGADLSDTLM---DRMVLN--EANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLL 214

Query: 90  QREYLCKVADGVNPTTGNATRDTLLC 115
           Q++ LCK A G NP TG  TR +L C
Sbjct: 215 QKQALCKYATGTNPLTGVDTRKSLGC 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 24  CLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
           CL+     GADL  A L++AD + AN+  ANL  ANL+GA    N +F+G+N+  A    
Sbjct: 217 CLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANLKGA-KLSNANFKGANLQRAYLRH 275

Query: 84  VPLRDDQRE 92
           V LR+   E
Sbjct: 276 VNLREAHME 284

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
388510406	225	unknown [Lotus japonicus]	0.75	0.386	0.965	3e-41
359806262	222	uncharacterized protein LOC100806792 [Gl	0.75	0.391	0.942	1e-40
388521435	225	unknown [Lotus japonicus]	0.75	0.386	0.954	1e-40
224098455	218	predicted protein [Populus trichocarpa]	0.75	0.399	0.954	4e-40
255645177	222	unknown [Glycine max]	0.75	0.391	0.931	4e-40
351722845	224	uncharacterized protein LOC100500352 [Gl	0.75	0.388	0.931	1e-39
147774410	221	hypothetical protein VITISV_013914 [Viti	0.75	0.393	0.942	2e-39
224112717	219	predicted protein [Populus trichocarpa]	0.75	0.397	0.942	2e-39
225449424	221	PREDICTED: thylakoid lumenal 15 kDa prot	0.75	0.393	0.942	2e-39
449441422	214	PREDICTED: thylakoid lumenal 15 kDa prot	0.75	0.406	0.919	2e-38

>gi|388510406|gb|AFK43269.1| unknown [Lotus japonicus]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/87 (96%), Positives = 87/87 (100%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSF+GSNITGADFTDVPLRDD
Sbjct: 139 LTGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFKGSNITGADFTDVPLRDD 198

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATR+TLLCN
Sbjct: 199 QREYLCKVADGVNPTTGNATRETLLCN 225

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806262|ref|NP_001240959.1| uncharacterized protein LOC100806792 [Glycine max] gi|255626639|gb|ACU13664.1| unknown [Glycine max]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 86/87 (98%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLR+ADFSLANVTKANLSNANLEGALATGNTSFRGSN+TGADFTDVPLR+D
Sbjct: 136 LTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFRGSNVTGADFTDVPLRED 195

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATRDTL CN
Sbjct: 196 QREYLCKVADGVNPTTGNATRDTLFCN 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521435|gb|AFK48779.1| unknown [Lotus japonicus]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 86/87 (98%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLRSADF LANVTKANLSNANLEGALATGNTSF+GSNITGADFTDVPLRDD
Sbjct: 139 LTGADLSDADLRSADFFLANVTKANLSNANLEGALATGNTSFKGSNITGADFTDVPLRDD 198

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATR+TLLCN
Sbjct: 199 QREYLCKVADGVNPTTGNATRETLLCN 225

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098455|ref|XP_002311180.1| predicted protein [Populus trichocarpa] gi|222851000|gb|EEE88547.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 85/87 (97%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLRSADFSL NVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR+D
Sbjct: 132 LTGADLSDADLRSADFSLTNVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRED 191

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCK ADGVNPTTGNATRDTLLCN
Sbjct: 192 QREYLCKFADGVNPTTGNATRDTLLCN 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645177|gb|ACU23086.1| unknown [Glycine max]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 85/87 (97%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLR+ADFSLANVTKANLSNANLEGAL TGNTSFRGSN+TGADFTDVPLR+D
Sbjct: 136 LTGADLSDADLRNADFSLANVTKANLSNANLEGALVTGNTSFRGSNVTGADFTDVPLRED 195

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATRDTL CN
Sbjct: 196 QREYLCKVADGVNPTTGNATRDTLFCN 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722845|ref|NP_001236746.1| uncharacterized protein LOC100500352 [Glycine max] gi|255630103|gb|ACU15405.1| unknown [Glycine max]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 85/87 (97%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLR+ADFSLANVTKANLSNANLEGALATGNTSF+GSNITGADFTDVPLR+D
Sbjct: 138 LTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFKGSNITGADFTDVPLRED 197

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATRD L CN
Sbjct: 198 QREYLCKVADGVNPTTGNATRDALFCN 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774410|emb|CAN74472.1| hypothetical protein VITISV_013914 [Vitis vinifera]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 85/87 (97%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLR ADFSLANVTKANLSNANLEGALATGNTSFRGS ITGADFTDVPLR+D
Sbjct: 135 LTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIITGADFTDVPLRED 194

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATR+TLLCN
Sbjct: 195 QREYLCKVADGVNPTTGNATRETLLCN 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112717|ref|XP_002316270.1| predicted protein [Populus trichocarpa] gi|222865310|gb|EEF02441.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 84/87 (96%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLRSAD SLANV K NLSNANLEGALATGNTSFRGSNITGADFTDVPLR+D
Sbjct: 133 LTGADLSDADLRSADLSLANVAKVNLSNANLEGALATGNTSFRGSNITGADFTDVPLRED 192

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATRDTLLCN
Sbjct: 193 QREYLCKVADGVNPTTGNATRDTLLCN 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449424|ref|XP_002282933.1| PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Vitis vinifera] gi|296086195|emb|CBI31636.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 85/87 (97%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLR ADFSLANVTKANLSNANLEGALATGNTSFRGS ITGADFTDVPLR+D
Sbjct: 135 LTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIITGADFTDVPLRED 194

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATR+TLLCN
Sbjct: 195 QREYLCKVADGVNPTTGNATRETLLCN 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441422|ref|XP_004138481.1| PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like [Cucumis sativus]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/87 (91%), Positives = 84/87 (96%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLSDADLR ADFSLANVTKANLSNANLEGALATGNTSFRGS I GADFTDVPLR+D
Sbjct: 128 LTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLRED 187

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 188 QREYLCKVADGVNPTTGNATRETLLCD 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2055023	224	AT2G44920 "AT2G44920" [Arabido	0.586	0.303	0.897	7.1e-29
TAIR|locus:2202033	280	AT1G12250 "AT1G12250" [Arabido	0.560	0.232	0.424	6.4e-07

TAIR|locus:2055023 AT2G44920 "AT2G44920" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 61/68 (89%), Positives = 63/68 (92%)

Query:    49 NVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNA 108
             NVTK NL+NANLEGA  TGNTSF+GSNITGADFTDVPLRDDQR YLCKVADGVN TTGNA
Sbjct:   157 NVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNA 216

Query:   109 TRDTLLCN 116
             TRDTLLCN
Sbjct:   217 TRDTLLCN 224

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2202033 AT1G12250 "AT1G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query:    50 VTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNAT 109
             + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ LCK A G NP TG  T
Sbjct:   176 LNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDT 234

Query:   110 RDTLLC 115
             R +L C
Sbjct:   235 RKSLGC 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116        97   0.00091  102 3  11 22  0.38    30
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  110 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.56u 0.12s 8.68t   Elapsed:  00:00:00
  Total cpu time:  8.56u 0.12s 8.68t   Elapsed:  00:00:00
  Start:  Thu May  9 19:04:06 2013   End:  Thu May  9 19:04:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22160	TL15A_ARATH	No assigned EC number	0.8850	0.75	0.3883	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00080525	hypothetical protein (218 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XII.166.1	hypothetical protein (196 aa)			•	•					0.563

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	7e-08
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	4e-07
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-07
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	8e-07
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	9e-07
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	2e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	4e-06
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	6e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	2e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	2e-05
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	8e-05
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	9e-05
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	1e-04
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	6e-04
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	7e-04
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	7e-04
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	0.002
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	0.003

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 44.7 bits (107), Expect = 7e-08
 Identities = 23/34 (67%), Positives = 26/34 (76%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGA 63
          LSGA+L  ADLR AD S A++T ANLS ANL GA
Sbjct: 3  LSGANLRGADLRGADLSGADLTGANLSGANLSGA 36

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
           LSGA+LS+A+L  A+ S AN+  ANLSNANL GA  +G     G++++GA+ +   LR
Sbjct: 120 LSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGAD-LSGADLSGANLSGADLR 176

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           LSGADLS ADL  AD S AN++ A+L  ANL GA  +G    N +  G++++GAD T   
Sbjct: 150 LSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGAN 209

Query: 86  LRD 88
           L +
Sbjct: 210 LVN 212

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 45.6 bits (108), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           LSGADLS A+L +A+ + AN++ ANL+ ANL  A         G++++GAD +   L  
Sbjct: 115 LSGADLSGANLSNANLTGANLSGANLNGANLSNAN-LSGADLSGADLSGADLSGANLSG 172

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG---------NTSFRGSNITGAD 80
           LSGA+LS ADLR A+ S AN++ A+L NANL GA  +G         N +  G+N+ GA+
Sbjct: 165 LSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNANLGGANLFGAN 224

Query: 81  FTDVPLRD 88
                L  
Sbjct: 225 LLGADLSG 232

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
           LS A+LS ADL  AD S A+++ ANLS A+L GA  +G  +  G+++  A+ +   L 
Sbjct: 145 LSNANLSGADLSGADLSGADLSGANLSGADLRGANLSG-ANLSGADLRNANLSGADLS 201

Length = 238

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 40.4 bits (96), Expect = 4e-06
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEG 62
          L GADL  ADL  AD + AN++ ANLS ANL G
Sbjct: 8  LRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSN---ANLEGALATGNTSFRGSNITGADFTDVPL 86
           LSGADL  A+LR A+ S AN++ ANLSN   ANL GA  +G  +   +N+TGA+ +   L
Sbjct: 82  LSGADLEGANLRGANLSGANLSGANLSNATRANLSGADLSG-ANLSNANLTGANLSGANL 140

Query: 87  RD 88
             
Sbjct: 141 NG 142

Length = 238

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 38.5 bits (91), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 11/51 (21%)

Query: 33 ADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
          A+LS A+LR AD   A+++ A+L+ ANL GA           N++GA+ + 
Sbjct: 1  ANLSGANLRGADLRGADLSGADLTGANLSGA-----------NLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 31  SGADLSDADLRSADFSLANVTKANLSNANLEGALAT--GNTSFRGSNITGADFTDVPLR 87
            GADLS ADL  A+   AN++ ANLS ANL  A           G+N++ A+ T   L 
Sbjct: 78  KGADLSGADLEGANLRGANLSGANLSGANLSNATRANLSGADLSGANLSNANLTGANLS 136

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 31  SGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           + A+LS ADL  A+ S AN+T ANLS ANL GA    N +  G++++GAD +   L  
Sbjct: 111 TRANLSGADLSGANLSNANLTGANLSGANLNGA-NLSNANLSGADLSGADLSGADLSG 167

Length = 238

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGA-LATGNTSFRGSNITGADFTDVPL 86
             G DLSD D  +ADF    ++  NL  ANL  A L   N    GSN+T A+ T   L
Sbjct: 166 FQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLM--GSNMTKANLTHADL 221

Length = 291

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
           L GA+L  A+L + +   +N+TKANL++A+L  A  +G      + + G+D TD  L
Sbjct: 191 LVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVN-LTAAILFGSDLTDTKL 246

Length = 291

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 31 SGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
             DL + +  +A     N +   L N N        +  F  +++  A F++  L++
Sbjct: 9  ENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLR-DVDFTEADLKNAKFSNCDLKN 65

Length = 77

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLS-NANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           LSG DLS A+L  AD S AN+  A+LS  A+L GA   G  + RG+N++GA+ +   L +
Sbjct: 51  LSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGA-NLRGANLSGANLSGANLSN 109

Query: 89  DQREYL 94
             R  L
Sbjct: 110 ATRANL 115

Length = 238

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 15/74 (20%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLS---------------NANLEGALATGNTSFRGS 74
           L G++++ A+L  AD + AN++  NL+                A L+    T   +  G+
Sbjct: 206 LMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGA 265

Query: 75  NITGADFTDVPLRD 88
           ++TG+  T  PL D
Sbjct: 266 DLTGSQHTPTPLPD 279

Length = 291

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 25  LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALA----TGNTSFRGSNITGAD 80
           ++L    G +L  A L  A+ +  N+  A+LS ANLEGA+         +F+G+N++G  
Sbjct: 144 VILTAQGGMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTS 203

Query: 81  FTDVPLRD 88
             D   ++
Sbjct: 204 LGDSNFKN 211

Length = 350

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 31  SGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDV 84
             A+LS  DL  A+ S A+++ ANL  A+L            G+N+ GA+ +  
Sbjct: 47  ENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGA 100

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PRK15197	291	secreted effector protein PipB; Provisional	99.56
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.37
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.31
PF13599	78	Pentapeptide_4: Pentapeptide repeats (9 copies); P	99.3
PRK09718	512	hypothetical protein; Validated	99.23
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.21

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.56  E-value=1.9e-15  Score=113.59  Aligned_cols=17  Identities=24%  Similarity=0.255  Sum_probs=10.5

Q ss_pred             hccCCCCcccccccccc
Q 033564           97 VADGVNPTTGNATRDTL  113 (116)
Q Consensus        97 ~~~g~~~~~~~~~~~~l  113 (116)
                      .+.|+++.++++|+..|
T Consensus       261 ~L~gad~~ga~~tp~~~  277 (291)
T PRK15197        261 ALTGADLTGSQHTPTPL  277 (291)
T ss_pred             CCCCCcccCCccCCCCC
Confidence            45566777776665543

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.37  E-value=2.3e-13  Score=98.70  Aligned_cols=61  Identities=26%  Similarity=0.338  Sum_probs=27.7

Q ss_pred             cCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCccccc
Q 033564           45 FSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNA  108 (116)
Q Consensus        45 f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~~~~  108 (116)
                      |.++++++++++.|+|+++++.+ +++++++|.|+++++++|+++++++.  ++-|+|+-.+.+
T Consensus       228 ~egs~m~ginLrvA~Lknanle~-~NLrgA~LaGadLencnlsG~dLQeA--nLRg~Nlk~A~~  288 (302)
T KOG1665|consen  228 MEGSQMTGINLRVATLKNANLEN-CNLRGANLAGADLENCNLSGADLQEA--NLRGVNLKEAHM  288 (302)
T ss_pred             ccccccccceeEecccccccccc-CccccccccCCccccCCCCCcchhHh--hcccCchhhHHH
Confidence            33333333333344444444444 45555555555555555555555432  344444444443

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.31  E-value=1e-12  Score=79.96  Aligned_cols=6  Identities=33%  Similarity=0.805  Sum_probs=2.2

Q ss_pred             cchhcc
Q 033564           19 ISYIHC   24 (116)
Q Consensus        19 ~~f~~c   24 (116)
                      +.|.+|
T Consensus         6 ~~f~~~   11 (78)
T PF13599_consen    6 CSFSGC   11 (78)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            333333

...

>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A

Probab=99.30  E-value=7.3e-13  Score=80.63  Aligned_cols=63  Identities=21%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             cccCCcccCccccCcccCCceecCceeccCcc-cCCcccCceeccCCeecCCccCCCcCChhhHH
Q 033564           29 PLSGADLSDADLRSADFSLANVTKANLSNANL-EGALATGNTSFRGSNITGADFTDVPLRDDQRE   92 (116)
Q Consensus        29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l-~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~   92 (116)
                      +|.+++|++++|.++.|.++.+.++.|.+++| .++.|.+ +.+.++.|.+++|.++.+.+++++
T Consensus         2 ~~~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~-~~l~~~~f~~~~l~~~~f~~~~l~   65 (78)
T PF13599_consen    2 DFENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSN-CQLDNSDFSNCDLKRASFSNCDLD   65 (78)
T ss_dssp             EEESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETT-EBETTEBETTSBETTEEETTEB-T
T ss_pred             EEEEEEEECCCCCCCEeECCEEECcEEECCccccCCeEEC-CCCCCCEEEeCEEeCCEEecCCcc
Confidence            44455555555555555555555555555554 5555555 555555555444444444444444

...

>PRK09718 hypothetical protein; Validated

Probab=99.23  E-value=2.9e-12  Score=101.30  Aligned_cols=10  Identities=20%  Similarity=0.042  Sum_probs=3.6

Q ss_pred             CCcccccccc
Q 033564          102 NPTTGNATRD  111 (116)
Q Consensus       102 ~~~~~~~~~~  111 (116)
                      ++..+.++++
T Consensus       196 DLseAdFSEc  205 (512)
T PRK09718        196 YLYASHFTRA  205 (512)
T ss_pred             cCCcCCccCC
Confidence            3333333333

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.21  E-value=9.9e-12  Score=90.28  Aligned_cols=96  Identities=23%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             cccccccCCcchhcc------ccCCcccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCC
Q 033564           10 LPVAAKWGNISYIHC------LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD   83 (116)
Q Consensus        10 ~~~~~~~~~~~f~~c------~~~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~   83 (116)
                      ....+.+....|++.      +.+++|+||+|.++++.++++.-++++++++.+|+|.+|.+.+ ++++.|+|+|+|+..
T Consensus       197 N~eGA~L~gcNfedps~~kaNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaG-adLencnlsG~dLQe  275 (302)
T KOG1665|consen  197 NAEGASLKGCNFEDPSGLKANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAG-ADLENCNLSGADLQE  275 (302)
T ss_pred             ccccccccCcCCCCccchhccccccccccccccccccccceeEeccccccccccCccccccccC-CccccCCCCCcchhH
Confidence            334444555555542      4455566666666665555555555555555555555555555 555555554444444


Q ss_pred             CcCChhhHHHHh--hhccCCCCccc
Q 033564           84 VPLRDDQREYLC--KVADGVNPTTG  106 (116)
Q Consensus        84 a~l~~~~l~~~~--~~~~g~~~~~~  106 (116)
                      |++++++++..-  +.+.+..+.++
T Consensus       276 AnLRg~Nlk~A~~e~mltplhMsqa  300 (302)
T KOG1665|consen  276 ANLRGVNLKEAHMEAMLTPLHMSQA  300 (302)
T ss_pred             hhcccCchhhHHHHhhccchhhccc
Confidence            444444444322  33455555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
3n90_A	152	The 1.7 Angstrom Resolution Crystal Structure Of At		2e-29
2f3l_A	184	Crystal Structure Of A Lumenal Rfr-Domain Protein (		2e-06
2g0y_A	184	Crystal Structure Of A Lumenal Pentapeptide Repeat		2e-06

>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of At2g44920, A Pentapeptide Repeat Protein From Arabidopsis Thaliana Thylakoid Lumen Length = 152

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 62/68 (91%)
Query: 49  NVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNA 108
           NVTK NL+NANLEGA   GNTSF+GSNITGADFTDVPLRDDQR YLCKVADGVN TTGNA
Sbjct: 77  NVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNA 136
Query: 109 TRDTLLCN 116
           TRDTLLCN
Sbjct: 137 TRDTLLCN 144

>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein (Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1 Angstrom Resolution Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 53  ANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDT 112
           A+L+NA L  A+    T F  + ITGADF+   L   + + LC  ADGVNP TG +TR++
Sbjct: 122 ADLTNAVLTEAIXX-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRES 180
Query: 113 LLCN 116
           L C 
Sbjct: 181 LRCQ 184

>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein From Cyanothece Sp 51142 At 2.3 Angstrom Resolution. Tetragonal Crystal Form Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 53  ANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDT 112
           A+L+NA L  A+    T F  + ITGADF+   L   + + LC  ADGVNP TG +TR++
Sbjct: 122 ADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRES 180
Query: 113 LLCN 116
           L C 
Sbjct: 181 LRCQ 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	2e-32
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	6e-26
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	4e-08
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	3e-07
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	9e-13
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	3e-11
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	6e-11
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	3e-09
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	5e-06
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	4e-05
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	9e-05
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-11
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-10
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	3e-10
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	8e-10
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	5e-08
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	1e-06
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-11
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	5e-11
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	5e-11
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-10
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	7e-10
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	6e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	8e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	8e-08
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-07
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	9e-07
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	5e-04
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-11
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	6e-11
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	4e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	5e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	6e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	9e-10
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-09
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	9e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-11
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	3e-10
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	4e-10
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-10
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	6e-10
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-10
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	2e-09
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	6e-08
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-06
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	7e-05
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	4e-11
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	4e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	5e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	6e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	7e-10
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-09
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-09
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-09
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-06
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-05
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-11
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	9e-11
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	5e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	6e-10
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	7e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	7e-09
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-08
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-07
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-07
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-06
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	7e-11
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-10
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	4e-10
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	6e-10
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-09
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-09
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	8e-09
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-08
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-08
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	7e-07
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-06
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-10
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	8e-10
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	1e-07
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	4e-06
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-10
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-10
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-10
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	8e-09
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	5e-07
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-06
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-05

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score =  110 bits (277), Expect = 2e-32
 Identities = 76/87 (87%), Positives = 80/87 (91%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L+GADLS+ADLR ADFSLANVTK NL+NANLEGA   GNTSF+GSNITGADFTDVPLRDD
Sbjct: 58  LTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDD 117

Query: 90  QREYLCKVADGVNPTTGNATRDTLLCN 116
           QR YLCKVADGVN TTGNATRDTLLCN
Sbjct: 118 QRVYLCKVADGVNATTGNATRDTLLCN 144

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 94.5 bits (236), Expect = 6e-26
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L GADL  ADL +    L +   A+L+NA L  A+    T F  + ITGADF+   L   
Sbjct: 99  LIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMR-TKFDDAKITGADFSLAVLDVY 157

Query: 90  QREYLCKVADGVNPTTGNATRDTLLC 115
           + + LC  ADGVNP TG +TR++L C
Sbjct: 158 EVDKLCDRADGVNPKTGVSTRESLRC 183

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
               ++     SA +    +   + S  +L  A       F  +++T ++F++  LR
Sbjct: 39 DDDKAMAMVTGSSASYEDVKLIGEDFSGKSLTYA------QFTNADLTDSNFSEADLR 90

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 30 LSGADL--SDADLRSADFSLANVTKANLSNANLEGALATGNTS---FRGSNITGADFTDV 84
           SG     S     +A F   ++   +L   + + A+A    S   +    + G DF+  
Sbjct: 8  SSGLVPRGSGMKETAAKFERQHMDSPDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSGK 67

Query: 85 PLRD 88
           L  
Sbjct: 68 SLTY 71

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 62.0 bits (150), Expect = 9e-13
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           + G + S++    +D S  +  +   + + L   + + NT F  S++            
Sbjct: 68  IKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCS-NTKFSNSDMNEVFLQYSITTQ 125

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 11/65 (16%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGA-----------LATGNTSFRGSNITG 78
            + +D+S        F+ + ++    SN     +                 SF  + +  
Sbjct: 78  FTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKN 137

Query: 79  ADFTD 83
                
Sbjct: 138 TLIRH 142

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 57.0 bits (137), Expect = 6e-11
 Identities = 8/72 (11%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 18  NISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGA-LATGNTSFRGSNI 76
             S I         G  +   +  ++ F+ ++++  +        + L+  +     +  
Sbjct: 51  TFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLS--DVVCSNTKF 108

Query: 77  TGADFTDVPLRD 88
           + +D  +V L+ 
Sbjct: 109 SNSDMNEVFLQY 120

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 30  LSGADLSDADLRSADFSLANVT--KANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
            S    S++D+       +  T  + +  +  L+  L     +  G  +   D +  P  
Sbjct: 103 CSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPDNSSPPSV 162

Query: 88  DDQREYL 94
                ++
Sbjct: 163 SGGGNFI 169

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 10/58 (17%), Positives = 19/58 (32%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
          L+ A L      +   +  + + A+  N      L        G  I G +F++    
Sbjct: 22 LTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFT 79

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 12/60 (20%)

Query: 30 LSGADLSDADLRSADFS-LANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           +  D S+AD R+  FS +   +        ++G            N + + FT   +  
Sbjct: 37 AADRDFSNADFRNITFSKILPPSFMERDGDIIKGF-----------NFSNSKFTYSDISH 85

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 21/83 (25%)

Query: 25  LLLFPLSGADL-------SDADLRSADFS-----------LANVTKANLSNANLEGA-LA 65
            +L   +G  L       S+AD R+  FS              +   N SN+    + ++
Sbjct: 25  AVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDIS 84

Query: 66  TGNTSFRGSNITGADFTDVPLRD 88
             +  F     T +  +DV   +
Sbjct: 85  --HLHFDECRFTYSTLSDVVCSN 105

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 56.7 bits (138), Expect = 1e-11
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L  A L  A+L+ A+   AN+  ANL NANL GA+ TG  +   +++ G +     + D
Sbjct: 93  LENAILIGANLQGANLENANLQGANLENANLRGAILTG-VNLEETHLKGIETDKNTVWD 150

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L   +LS+ DL +A    AN+  ANL NANL+GA      +   +N+ GA  T V L +
Sbjct: 83  LVETNLSETDLENAILIGANLQGANLENANLQGA------NLENANLRGAILTGVNLEE 135

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 53.2 bits (129), Expect = 3e-10
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           LS A+L  +DL S     A + + NLS  +LE A+  G  + +G+N+  A+     L +
Sbjct: 63  LSNANLYQSDLSSIILENAILVETNLSETDLENAILIG-ANLQGANLENANLQGANLEN 120

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 51.6 bits (125), Expect = 8e-10
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          L          +  D + AN++ ANL  ++L             + +   + ++  L +
Sbjct: 43 LVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSI------ILENAILVETNLSETDLEN 95

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 48.2 bits (116), Expect = 2e-08
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 4/62 (6%)

Query: 30 LSGADLSDADLRSADFS---LANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
            G +L   +L   +F        + + L         A        +N++ A+     L
Sbjct: 15 CVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKP-VDLTRANLSNANLYQSDL 73

Query: 87 RD 88
            
Sbjct: 74 SS 75

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 47.0 bits (113), Expect = 5e-08
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 27 LFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
                   S + L +  F +      +L+ ANL  A      +   S+++     +  L
Sbjct: 30 FGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNA------NLYQSDLSSIILENAIL 83

Query: 87 RD 88
           +
Sbjct: 84 VE 85

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 4/57 (7%)

Query: 32 GADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
            +L   +L   +    N+   NL   N              S +    F     + 
Sbjct: 3  TNNLYRLELE-RECVGCNLEGVNLPRENFGLKY---RIPRSSSPLVTTPFGMDKAKP 55

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82
          LSG  L   +L S +FS A +   +L  ++L  A+     SF+ S +   +F 
Sbjct: 39 LSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLEN-CSFKNSILNECNFC 90

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 57.3 bits (138), Expect = 5e-11
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGN---TSFRGSNITGADFTDVPL 86
           L  +DLS A L +  F  + + + N   ANL   +       ++F  SN+  A F     
Sbjct: 64  LRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSY 123

Query: 87  RD 88
             
Sbjct: 124 IQ 125

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 56.9 bits (137), Expect = 5e-11
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           SG DLS   L   + S  N + A L + +L  +          + +    F +  L +
Sbjct: 34 YSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMS------DLSQAVLENCSFKNSILNE 86

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGA---LATGNTSFRGSNITGADFTDVPL 86
           L   DL  +DL  A     +   + L+  N   A          F  SN + ++  +   
Sbjct: 59  LDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASF 118

Query: 87  R 87
           +
Sbjct: 119 K 119

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
                 + +    D S  ++   NLS+ N  GA+    T  R S+++ A   +   ++
Sbjct: 24 TGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDD-TDLRMSDLSQAVLENCSFKN 81

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 13/72 (18%)

Query: 30  LSGADLSDADLRSADFSLANVT-------------KANLSNANLEGALATGNTSFRGSNI 76
            S ++L +A  + + +                      LS A L       +      N+
Sbjct: 108 FSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINL 167

Query: 77  TGADFTDVPLRD 88
            G       +++
Sbjct: 168 GGCYIDLSDIQE 179

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 8/60 (13%)

Query: 30  LSGADLSDA------DLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
           LSGA L D          + +     +  +++    L             S +   + +D
Sbjct: 146 LSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILSVLDNYTK--SNKSILLTMNTSD 203

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 30  LSGADLSDADLRS----ADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
              A+LS+  +R+    ++FS +N+  A+   ++              +++TGA    
Sbjct: 89  FCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQY----PPILNEADLTGAIIIP 142

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 51.1 bits (122), Expect = 8e-09
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 30  LSGADLSDADLRSADFSLANVTKAN--LSNANLEGALATGNTSFRGSNITGADFTDV 84
              ++ S+++L++A F  ++  +    L+ A+L GA         G  ++GA   DV
Sbjct: 103 FENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGA-----IIIPGMVLSGAILGDV 154

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 48.0 bits (114), Expect = 8e-08
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          LS     +      ++S  +++  +L   NL         +F G+ +   D     L  
Sbjct: 19 LSANRTGEESAEELNYSGCDLSGLSLVGLNLSSV------NFSGAVLDDTDLRMSDLSQ 71

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 13/66 (19%)

Query: 30 LSGADLSDADLRSADFSL-------ANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82
             A LS A+L +    L        +  + N S  +L G       S  G N++  +F+
Sbjct: 2  QGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGL------SLVGLNLSSVNFS 55

Query: 83 DVPLRD 88
             L D
Sbjct: 56 GAVLDD 61

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 13/62 (20%)

Query: 30  LSGADLSDADL-RSADFSLAN------VTKANLSNANLEGALATGNTSFRGSNITGADFT 82
           L+ ADL+ A +      S A       +     +  NL G           S+I     +
Sbjct: 130 LNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINLGGC------YIDLSDIQENILS 183

Query: 83  DV 84
            +
Sbjct: 184 VL 185

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 10/81 (12%), Positives = 17/81 (20%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L   + SD          A      +S   L         S   S        +  ++  
Sbjct: 196 LLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYVKMSLADSFSIHPYLNNANIQQW 255

Query: 90  QREYLCKVADGVNPTTGNATR 110
                    D +     N+  
Sbjct: 256 LEPICDDFFDTIMSWFNNSIM 276

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 56.3 bits (137), Expect = 3e-11
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L+G  L +  L   D     +  A+LS A   GA        RG+ +    +    L  
Sbjct: 107 LTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDD-ADLRGATVDPVLWRTASLVG 164

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 55.5 bits (135), Expect = 6e-11
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
             A  S+ D    + + +    +   N   E       ++F   ++ G+ F    LR 
Sbjct: 27 TERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWH-STFAQCSMLGSVFVACRLRP 84

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82
           L   DL    LR AD S A  T A L +A+L GA       +R +++ GA   
Sbjct: 117 LVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDP-VLWRTASLVGARVD 168

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
            + A L   DLR  + +   + + +L + +L   +  G     G+  TGA   D  LR 
Sbjct: 92  FTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRG-ADLSGARTTGARLDDADLRG 149

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 53.6 bits (130), Expect = 4e-10
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           +G D  D DL       A  ++ + S  NL  +   G    N +F  + +  + F    
Sbjct: 12 FTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCS 71

Query: 86 LRD 88
          +  
Sbjct: 72 MLG 74

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 52.8 bits (128), Expect = 5e-10
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGA 79
            +GA L DADLR A         A+L  A ++   A    +  G  + G 
Sbjct: 137 TTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG 186

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 52.8 bits (128), Expect = 6e-10
 Identities = 15/54 (27%), Positives = 20/54 (37%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
           LSGA  + A L  AD   A V       A+L GA    + +   +   G     
Sbjct: 132 LSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAG 185

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 52.5 bits (127), Expect = 9e-10
 Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
            +   +  +   +       +   + + A L G    G  +  G  +      D  LR 
Sbjct: 67  FAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRG-LNLTGCRLRETSLVDTDLRK 124

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
          L+ +    +  R+  F    +  +  +  ++ G++       R   +   DFT   L 
Sbjct: 42 LAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVA-CRLRPLTLDDVDFTLAVLG 98

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 50.9 bits (123), Expect = 3e-09
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
              + +  D R  D S  +  +A  S  +  G      +  RGS      F    L  
Sbjct: 7  WVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAE-SQHRGSAFRNCTFERTTLWH 64

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 47.1 bits (113), Expect = 9e-08
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 6/57 (10%)

Query: 32 GADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
               D +    DF   ++++ +   A            F G N+  +       R+
Sbjct: 4  MQQWVDCEFTGRDFRDEDLSRLHTERAMFSEC------DFSGVNLAESQHRGSAFRN 54

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 57.1 bits (139), Expect = 3e-11
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 27  LFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
            +    ADLS A L+ AD S AN+  A L  ANL+GA  TG    + + + GA   D  +
Sbjct: 197 QWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTG-AILKDAELKGAIMPDGSI 255

Query: 87  RD 88
            D
Sbjct: 256 HD 257

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTS--FRGSNITGADFTDVPLR 87
           L+GADLS ADLR+A    AN+  A L  AN    +  GN +    G+++ GAD +   L 
Sbjct: 162 LTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLE 221

Query: 88  D 88
            
Sbjct: 222 S 222

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 54.0 bits (131), Expect = 4e-10
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           LS ADL  A LR AD + A + K  L  ANL  A   G  +   +N++        LR 
Sbjct: 92  LSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCG-ANLNSANLSRCLLFQADLRP 149

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L  A+L  A L  A+ + AN+++  L  A+L  +     T      +TGAD +   LR 
Sbjct: 117 LEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQR-TDLGYVLLTGADLSYADLRA 174

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 53.7 bits (130), Expect = 6e-10
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          L+ A L+ ADL  AD     + K+N S+  L  A          + + G D ++  L  
Sbjct: 47 LTNASLTGADLSYADLRQTRLGKSNFSHTCLREA------DLSEAILWGIDLSEADLYR 99

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 53.3 bits (129), Expect = 7e-10
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           L  ADL  +  +  D     +T A+LS A+L  A      +  G+ +  A+F       +
Sbjct: 142 LFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHH-ANLDGAKLCRANFGRTIQWGN 200

Query: 90  QREYL 94
               L
Sbjct: 201 LAADL 205

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           L GA+L+ A+L       A++  ++    +L   L TG        R +++  A+     
Sbjct: 127 LCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAK 186

Query: 86  LRD 88
           L  
Sbjct: 187 LCR 189

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.5 bits (127), Expect = 1e-09
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           L  ADLS+A L   D S A++ +A L  A+L GA          +   +++ GA+     
Sbjct: 77  LREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSAN 136

Query: 86  LRD 88
           L  
Sbjct: 137 LSR 139

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L  ++ S   LR AD S A +   +LS A+L  A+        G+ +      +  L  
Sbjct: 67  LGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILRE-ADLTGAKLVKTRLEEANLIK 124

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 47.9 bits (115), Expect = 6e-08
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          L        + +  +     +T A+L+ A+L  A        R + +  ++F+   LR+
Sbjct: 27 LRHYAAGKRNFQHINLQEIELTNASLTGADLSYA------DLRQTRLGKSNFSHTCLRE 79

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 12/65 (18%)

Query: 30 LSGADLSDADLRSADFSL------ANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
                S    R +  ++          K N  + NL+            +++TGAD + 
Sbjct: 6  HHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEI------ELTNASLTGADLSY 59

Query: 84 VPLRD 88
            LR 
Sbjct: 60 ADLRQ 64

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 5/60 (8%), Positives = 16/60 (26%), Gaps = 7/60 (11%)

Query: 30 LSGADLSDADLRSADFSLANVT-KANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          +  +              +++     L +            +F+  N+   + T+  L  
Sbjct: 1  MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKR------NFQHINLQEIELTNASLTG 54

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 56.3 bits (137), Expect = 4e-11
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L  A LS A++R AD S AN+  A+LS A+L  A      +   + +  A+ T   L D
Sbjct: 127 LEQAILSHANIREADLSEANLEAADLSGADLAIADLHQ-ANLHQAALERANLTGANLED 184

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           +  ADLS+A+L +AD S A++  A+L  ANL  A      +  G+N+  A+     L  
Sbjct: 137 IREADLSEANLEAADLSGADLAIADLHQANLHQAALER-ANLTGANLEDANLEGTILEG 194

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           LSGA L+ ADLR A+ S A+++ A L NA LEGA+         +N+  A+     L  
Sbjct: 77  LSGATLNGADLRGANLSKADLSDAILDNAILEGAILDE-AVLNQANLKAANLEQAILSH 134

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 53.2 bits (129), Expect = 4e-10
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          L GA L + +L  A    A + +ANL  ANL  A         G+ + GAD     L  
Sbjct: 42 LRGAVLENINLSGAILHGAMLDEANLQQANLSRA------DLSGATLNGADLRGANLSK 94

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 53.2 bits (129), Expect = 5e-10
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82
           LSGADL+ ADL  A+   A + +ANL+ ANLE A      +  G+ + G +  
Sbjct: 152 LSGADLAIADLHQANLHQAALERANLTGANLEDA------NLEGTILEGGNNN 198

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L+ A+L  A+L  A  S AN+ +A+LS ANLE A  +G      +++  A+     L  
Sbjct: 117 LNQANLKAANLEQAILSHANIREADLSEANLEAADLSG-ADLAIADLHQANLHQAALER 174

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 52.9 bits (128), Expect = 7e-10
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           L GA L +A L  A+   AN+ +A LS+AN+  A  +          G+++  AD     
Sbjct: 107 LEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQAN 166

Query: 86  LRD 88
           L  
Sbjct: 167 LHQ 169

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L  A+L  A+L  AD S A +  A+L  ANL  A  +       + + GA   +  L  
Sbjct: 62  LDEANLQQANLSRADLSGATLNGADLRGANLSKADLSD-AILDNAILEGAILDEAVLNQ 119

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           L  A L  A L  A  + AN+  ANL  A L  A          +   ++++GAD     
Sbjct: 102 LDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIAD 161

Query: 86  LRD 88
           L  
Sbjct: 162 LHQ 164

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 49.8 bits (120), Expect = 9e-09
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGA 79
           L+ ADL  A+L  A    AN+T ANL +ANLEG          G N   A
Sbjct: 157 LAIADLHQANLHQAALERANLTGANLEDANLEGT------ILEGGNNNLA 200

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 8/54 (14%), Positives = 17/54 (31%)

Query: 35 LSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          +  +       S      +++    L    A G   F   ++ GA   ++ L  
Sbjct: 1  MGSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSG 54

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 30 LSGADLS-----------DADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITG 78
            G+ +            + D    D   A +   NLS A L GA+     + + +N++ 
Sbjct: 16 PRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDE-ANLQQANLSR 74

Query: 79 ADFTDVPLRD 88
          AD +   L  
Sbjct: 75 ADLSGATLNG 84

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 56.3 bits (137), Expect = 4e-11
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
           + GA  S +DL   +FS  +   AN ++ +L  +           +I G D   V L + 
Sbjct: 149 VLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNS------ELGDLDIRGVDLQGVKLDNY 202

Query: 90  Q 90
           Q
Sbjct: 203 Q 203

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 55.5 bits (135), Expect = 9e-11
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
              A +++ +L  A+FS   + K  L      GA   G  +F GS+++G +F+      
Sbjct: 114 FCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLG-ATFSGSDLSGGEFSTFDWEA 171

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 55.2 bits (134), Expect = 1e-10
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
            S   L   +L    +  A V  A  S ++L G   +       +F   ++T ++  D+ 
Sbjct: 129 FSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLD 188

Query: 86  LRD 88
           +R 
Sbjct: 189 IRG 191

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 53.6 bits (130), Expect = 4e-10
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          +     +   + ++ F   + + A+LS     G       S +G N + A   D   + 
Sbjct: 13 IDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKS 71

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 53.6 bits (130), Expect = 4e-10
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
            S A L DA  +S D S+A+   ++     +    A G   FRG++      T      
Sbjct: 59  FSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQG-ADFRGASFMNMITTRTWFCS 116

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 53.2 bits (129), Expect = 5e-10
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
             GA   +       F  A +T  NLS AN    +          + G+ + GA F+   
Sbjct: 99  FRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSD 158

Query: 86  LRD 88
           L  
Sbjct: 159 LSG 161

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 53.2 bits (129), Expect = 6e-10
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
             G + S A L+ A F   +++ A+  N++  G         +G++  GA F ++    
Sbjct: 54  QKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRH-CRAQGADFRGASFMNMITTR 111

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 51.3 bits (124), Expect = 3e-09
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
           +G  + ++   + DFS A+++             +    +F  + +  A F    L 
Sbjct: 18 FTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLS 75

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 50.5 bits (122), Expect = 7e-09
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 6/59 (10%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           +       AD R A F     T+    +A +         +   +N +        L +
Sbjct: 89  IRHCRAQGADFRGASFMNMITTRTWFCSAYITNT------NLSYANFSKVVLEKCELWE 141

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 50.2 bits (121), Expect = 7e-09
 Identities = 11/59 (18%), Positives = 20/59 (33%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          L G  +            +     + S A+L G    G   +   +  G +F+   L+D
Sbjct: 8  LVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKD 66

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
             GAD   A   +   +      A ++N NL  A  +         +    +    +  
Sbjct: 94  AQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSK-VVLEKCELWENRWIGAQVLG 151

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 17/70 (24%)

Query: 30 LSGADLSDADL-----------RSADFSLANVTKANLSNANLEGALATGNTSFRGSNITG 78
           SGADLS  +            +  +FS A +  A   + +L  A       FR S+  G
Sbjct: 33 FSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMA------DFRNSSALG 86

Query: 79 ADFTDVPLRD 88
           +      + 
Sbjct: 87 IEIRHCRAQG 96

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 32 GADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
             L    +    F+   +  +   N +  GA         G+   G  F D
Sbjct: 5  ALALVGEKIDRNRFTGEKIENSTFFNCDFSGA------DLSGTEFIGCQFYD 50

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALA 65
            +  DL++++L   D    ++    L N      + 
Sbjct: 174 FTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLME 209

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 55.6 bits (135), Expect = 7e-11
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           +  A+ ++AD   ADF+ +++  +   N  L GA      SF  +     D     ++ 
Sbjct: 127 IHDANFTEADCEDADFTQSDLKGSTFHNTKLTGA------SFIDAVNYHIDIFHNDIKR 179

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
              + ++A+L    F        NLS  ++          F    + G ++T      
Sbjct: 36 FRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFME-VRFVDCKMLGVNWTSAQWPS 93

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 10/58 (17%), Positives = 17/58 (29%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
           LS   +         F    +   N ++A        G  SF    +  + F  + L 
Sbjct: 61  LSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLA 118

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
           L+ +      L         +  AN + A+ E A  T      ++F  + +TGA F D  
Sbjct: 107 LNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAV 166

Query: 86  LRD 88
              
Sbjct: 167 NYH 169

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
              D S   L S  F      + N + A L          F   N++          +
Sbjct: 16 FVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRE-CEFVDCNLSLISIPQTSFME 73

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          +    L   D     F   + +  +L +   E        +F  + +    F +    D
Sbjct: 1  MPAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQ-CNFTEAELNRCKFRECEFVD 58

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          L+     + +    + SL ++ + +                  G N T A +  V +  
Sbjct: 46 LNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDC------KMLGVNWTSAQWPSVKMEG 98

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
                L+D+       +   + +  + +AN   A       F  S++ G+ F +  L 
Sbjct: 102 FERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCED-ADFTQSDLKGSTFHNTKLT 158

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 10/59 (16%), Positives = 17/59 (28%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           +      +           N T A   +  +EGAL+        S   G     V + +
Sbjct: 66  IPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVE 124

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 44.4 bits (106), Expect = 7e-07
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGA 63
           L G+   +  L  A F  A     ++ + +++ A
Sbjct: 147 LKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRA 180

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 12/70 (17%)

Query: 30  LSGADLSDADLRSADF-----------SLANVTKANLSNANLEGALATGNTSFRGSNITG 78
           + G + + A   S              + +      L+   +         +F  ++   
Sbjct: 81  MLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHD-ANFTEADCED 139

Query: 79  ADFTDVPLRD 88
           ADFT   L+ 
Sbjct: 140 ADFTQSDLKG 149

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
                L++    S D S       + SN            +F   N+TG +F D  L D
Sbjct: 57  FDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHR-VTFLRCNLTGTNFADSYLXD 114

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 53.0 bits (127), Expect = 8e-10
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
              DL + ++R+  F  A     +L+N        +    F   + +  ++       
Sbjct: 37 YQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSN-VRFEACDFSNVEWLSGSFHR 94

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDVP 85
            S  +          F   N+T  N +++ L   L         SFR +N     F    
Sbjct: 82  FSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTR 141

Query: 86  LRD 88
           L +
Sbjct: 142 LVE 144

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 12/68 (17%)

Query: 27 LFPLSGADLSD------ADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGAD 80
          L  L+   L D         +  D     V      +A  +        S         D
Sbjct: 18 LPLLTNCQLEDEAILENHLYQQIDLPNQEVRNLVFRDAVFDHL------SLANGQFASFD 71

Query: 81 FTDVPLRD 88
           ++V    
Sbjct: 72 CSNVRFEA 79

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 8/59 (13%), Positives = 15/59 (25%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
              DL     +   F   N +  +L+             S +   + G D  +     
Sbjct: 12 FEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLR 70

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
          L G           +FS  ++ +    + +     +  +   +G ++  A F    L 
Sbjct: 17 LEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLT 74

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 53.2 bits (128), Expect = 6e-10
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           L G DL +A     D ++A+ +++      L    A G  +F  ++            +
Sbjct: 58  LQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALG-INFSRASFANQITVXSYFCE 115

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 50.2 bits (120), Expect = 8e-09
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
                L   DLR A F   ++T A+ S +   G          G N + A F +    
Sbjct: 53  EQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRD-CQALGINFSRASFANQITV 109

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 30  LSGADLSD------ADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
                  D        L+  D   A+  + +L+ A+   +   G    R     G +F+ 
Sbjct: 42  FVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLG-LELRDCQALGINFSR 100

Query: 84  VPLRD 88
               +
Sbjct: 101 ASFAN 105

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
             G +L D      +FS A+        +    A  TG  +F  +N  G       L  
Sbjct: 83  CLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTG-NNFSYANFEGCLLEQCELSG 140

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 6/54 (11%)

Query: 35 LSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
          + D       F   ++           G       +F   ++    F D    D
Sbjct: 2  IXDXCFEGVRFEQQDLEGEQFQGCRFIGC------NFSWLDLAECRFVDCSFYD 49

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
           L GA L+ +DL  ++F   +    NL   +L      G    R  N+ G    +
Sbjct: 148 LFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPG-LDLRRVNLDGVQINE 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.84
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.83
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.66
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.64
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.55
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.45
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.39

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.84  E-value=5.3e-21  Score=130.23  Aligned_cols=88  Identities=83%  Similarity=1.156  Sum_probs=68.6

Q ss_pred             CCcccCCcccCccccCcccCCceecCceeccCcccCCccc-CceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCcc
Q 033564           27 LFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALAT-GNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTT  105 (116)
Q Consensus        27 ~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~-~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~  105 (116)
                      +++|++++|++++|++++|.+|+|++++|.+|+|.++.|. + ++|.+++|++++|++++|++++++++|++.+|+||.+
T Consensus        55 ~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~-~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~  133 (152)
T 3n90_A           55 DADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGN-TSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATT  133 (152)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSS-CBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTT
T ss_pred             ccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCC-ceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCcc
Confidence            4455555555555555666666666666666666666666 4 7888899999999999999999999999999999999


Q ss_pred             ccccccccCC
Q 033564          106 GNATRDTLLC  115 (116)
Q Consensus       106 ~~~~~~~l~~  115 (116)
                      +++|++.|-|
T Consensus       134 ~~~tr~~~~~  143 (152)
T 3n90_A          134 GNATRDTLLC  143 (152)
T ss_dssp             CCBHHHHTTT
T ss_pred             ccchhhhhhh
Confidence            9999998865

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.83  E-value=2.8e-21  Score=135.67  Aligned_cols=84  Identities=44%  Similarity=0.616  Sum_probs=61.9

Q ss_pred             CCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCcccccccc
Q 033564           32 GADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRD  111 (116)
Q Consensus        32 ~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~~~~~~~  111 (116)
                      +++|++++|++++|.+++|++|+|++++|.+++|.+ ++|.+++|++++|++|+|++++++++|.+++|+||.+.+-|+.
T Consensus       101 ~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~~a~l~~-a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~  179 (184)
T 2f3l_A          101 GADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMR-TKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRE  179 (184)
T ss_dssp             TCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEE-EECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHH
T ss_pred             CCeEEEeecccceecCcEeCccEeCCCEeeCCEECC-CEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhh
Confidence            333333333333444444455555555555555566 7888888899999999999999999999999999999999999


Q ss_pred             ccCCC
Q 033564          112 TLLCN  116 (116)
Q Consensus       112 ~l~~~  116 (116)
                      .|||+
T Consensus       180 sl~c~  184 (184)
T 2f3l_A          180 SLRCQ  184 (184)
T ss_dssp             HTTC-
T ss_pred             hcCCC
Confidence            99995

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.66  E-value=5.2e-17  Score=110.39  Aligned_cols=84  Identities=29%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             cccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHh----hhccCCCCc
Q 033564           29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLC----KVADGVNPT  104 (116)
Q Consensus        29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~----~~~~g~~~~  104 (116)
                      +|++++|++++|++++|++++|.+++|.+|+|.+++|.+ ++|.+++|.+++|.+++|++++|++..    ..+.|+++.
T Consensus        27 ~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~-a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~  105 (152)
T 3n90_A           27 TLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSE-ADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNIT  105 (152)
T ss_dssp             BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT-CBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCT
T ss_pred             CcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCC-CCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEec
Confidence            444444444444444444444444444444444444444 333333333333333333333333221    123444555


Q ss_pred             ccccccccc
Q 033564          105 TGNATRDTL  113 (116)
Q Consensus       105 ~~~~~~~~l  113 (116)
                      +++++...|
T Consensus       106 ~a~~~~a~l  114 (152)
T 3n90_A          106 GADFTDVPL  114 (152)
T ss_dssp             TCBCTTCCC
T ss_pred             CCEecCCcc
Confidence            554444433

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.64  E-value=4.6e-17  Score=114.13  Aligned_cols=39  Identities=33%  Similarity=0.452  Sum_probs=14.8

Q ss_pred             cccCCcccCccccCcccCCceecCceeccCcccCCcccC
Q 033564           29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATG   67 (116)
Q Consensus        29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~   67 (116)
                      +|++++|++++|.+++|++++|.+++|.+|+|.+++|.+
T Consensus        68 ~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~  106 (184)
T 2f3l_A           68 SLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHG  106 (184)
T ss_dssp             BCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTT
T ss_pred             CcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEE
Confidence            333333333333333333333333333333333333333

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.55  E-value=2.9e-15  Score=105.81  Aligned_cols=9  Identities=22%  Similarity=0.763  Sum_probs=3.7

Q ss_pred             cCCcchhcc
Q 033564           16 WGNISYIHC   24 (116)
Q Consensus        16 ~~~~~f~~c   24 (116)
                      +.++.|.+|
T Consensus        63 l~~~~f~~~   71 (216)
T 3pss_A           63 LREASFLRC   71 (216)
T ss_dssp             CTTCEEESC
T ss_pred             ccCCCcCcc
Confidence            334444443

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.45  E-value=2e-14  Score=115.41  Aligned_cols=53  Identities=15%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             cccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccC
Q 033564           29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT   82 (116)
Q Consensus        29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~   82 (116)
                      +|+|++|++++|++++|++++|++|+|++|+|.+|.|.+ ++|.+|+|++|+|.
T Consensus        67 ~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~-AnLsgAnLsgAnL~  119 (627)
T 2qyu_A           67 IIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSN-TKFSNSDMNEVFLQ  119 (627)
T ss_dssp             CEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTT-CEEESCBCTTCEEC
T ss_pred             ccCCCccCCCccCCCCCCCCccCCcccCCCchhhhcccc-ceECCcCCCCcccC
Confidence            444444444444444444444444444444444443333 33333333333333

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.39  E-value=1e-13  Score=111.31  Aligned_cols=67  Identities=13%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             ccCCcccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccC--CCcCChhhHH
Q 033564           25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT--DVPLRDDQRE   92 (116)
Q Consensus        25 ~~~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~--~a~l~~~~l~   92 (116)
                      +.+++|++++|++++|++++|.+|+|++|+|++|+|.+|+|.+ |+|.+|+|.+|+|+  +|+|++++|.
T Consensus        68 L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsg-AnLsgAnL~gA~L~~~gAnLsgAdL~  136 (627)
T 2qyu_A           68 IKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSN-SDMNEVFLQYSITTQQQPSFIDTTLK  136 (627)
T ss_dssp             EESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEES-CBCTTCEECCCTTCCSCCEEEEEECT
T ss_pred             cCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECC-cCCCCcccCCccccCCCCeeCCCCCC
Confidence            3355555555555555555555555555555555555555555 55555555544443  3444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	7e-15
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	8e-09
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-06
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	3e-04
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	0.001
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	0.004
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-07
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-06
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	2e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	7e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-04

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 63.7 bits (154), Expect = 7e-15
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 39/125 (31%)

Query: 30  LSGADLSDADLRSADFSLANVTKAN----------------------------------- 54
           L G D S   L  A F+ A++T +N                                   
Sbjct: 8   LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 67

Query: 55  LSNANLEGALATG----NTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATR 110
              A+L  A+ T      T F  + ITGADF+   L   + + LC  ADGVNP TG +TR
Sbjct: 68  FKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTR 127

Query: 111 DTLLC 115
           ++L C
Sbjct: 128 ESLRC 132

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 48.7 bits (115), Expect = 8e-09
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
           +  ADLS+A+L +AD S A++  A+L  ANL  A      +  G+N+  A+     L  
Sbjct: 117 IREADLSEANLEAADLSGADLAIADLHQANLHQAALER-ANLTGANLEDANLEGTILEG 174

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG---------NTSFRGSNITGAD 80
           L+ A+L  A+L  A  S AN+ +A+LS ANLE A  +G           +   + +  A+
Sbjct: 97  LNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERAN 156

Query: 81  FTDVPLRD 88
            T   L D
Sbjct: 157 LTGANLED 164

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82
           L GA L +A L  A+   AN+ +A LS+AN+  A          +N+  AD +
Sbjct: 87  LEGAILDEAVLNQANLKAANLEQAILSHANIREA------DLSEANLEAADLS 133

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 31  SGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQ 90
             A L  A L  A  + AN+  ANL  A L  A      + R ++++ A+     L    
Sbjct: 83  DNAILEGAILDEAVLNQANLKAANLEQAILSHA------NIREADLSEANLEAADLSGAD 136

Query: 91  REY 93
              
Sbjct: 137 LAI 139

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNAN 59
           S  DL  A L + + S A +  A L  AN
Sbjct: 17 FSIVDLRGAVLENINLSGAILHGAMLDEAN 46

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGA 63
           +G D  D DL       A  ++ + S  NL  +
Sbjct: 8  FTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES 41

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 30  LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITG 78
            +GA L DADLR A         A+L  A ++   A    +  G  + G
Sbjct: 133 TTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAG 181

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (92), Expect = 1e-05
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 31 SGADLSDADLRSADFSLANVTKANLSNANLEGA 63
             + +  D R  D S  +  +A  S  +  G 
Sbjct: 4  VDCEFTGRDFRDEDLSRLHTERAMFSECDFSGV 36

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 31  SGADLSDADLRSADFSLANVTKANLSNANLEGA 63
           SGA  + A L  AD   A V       A+L GA
Sbjct: 129 SGARTTGARLDDADLRGATVDPVLWRTASLVGA 161

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.1 bits (87), Expect = 7e-05
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%)

Query: 34 DLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREY 93
             D +    DF   ++++ +   A            F G N+  +       R+   E 
Sbjct: 2  QWVDCEFTGRDFRDEDLSRLHTERAMFSEC------DFSGVNLAESQHRGSAFRNCTFER 55

Query: 94 LC 95
            
Sbjct: 56 TT 57

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 30 LSGADLSDADLRSADFSLANVTKANLSNAN 59
              DLS      A FS  + +  NL+ + 
Sbjct: 13 FRDEDLSRLHTERAMFSECDFSGVNLAESQ 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.82
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.64
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.49
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.46

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.82  E-value=6.1e-21  Score=125.32  Aligned_cols=86  Identities=44%  Similarity=0.608  Sum_probs=63.8

Q ss_pred             cccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCccccc
Q 033564           29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNA  108 (116)
Q Consensus        29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~~~~  108 (116)
                      +|.+++|++++|.+++|.+++|++++|++++|.+++|.+ ++|.+++|++++|++|+|++++++.+|.++.|+||.+...
T Consensus        47 ~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a~l~~-a~~~~a~l~~adfs~a~L~~~~l~~~~~~~~g~n~~~~~~  125 (132)
T d2f3la1          47 ALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMR-TKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVS  125 (132)
T ss_dssp             BCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEE-EECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCB
T ss_pred             ccccccccccccccccccccccchhhhccCCcCCCCcCC-CCcCCCEECcCCCCCccCCHHHHHHHhccCcccCCCCcch
Confidence            333444444444444444444455555555555666666 8888888999999999999999999999999999999999


Q ss_pred             cccccCC
Q 033564          109 TRDTLLC  115 (116)
Q Consensus       109 ~~~~l~~  115 (116)
                      |+..|+|
T Consensus       126 ~~~~l~~  132 (132)
T d2f3la1         126 TRESLRC  132 (132)
T ss_dssp             HHHHTTC
T ss_pred             hhhccCC
Confidence            9999999

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.64  E-value=3.2e-17  Score=107.23  Aligned_cols=9  Identities=11%  Similarity=0.135  Sum_probs=3.4

Q ss_pred             cCCCCcccc
Q 033564           99 DGVNPTTGN  107 (116)
Q Consensus        99 ~g~~~~~~~  107 (116)
                      .|+++.+++
T Consensus        94 ~~adfs~a~  102 (132)
T d2f3la1          94 TGADFSLAV  102 (132)
T ss_dssp             TTCBCTTCE
T ss_pred             CcCCCCCcc
Confidence            333333333

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=1.1e-14  Score=98.83  Aligned_cols=11  Identities=27%  Similarity=0.308  Sum_probs=4.3

Q ss_pred             CCCCccccccc
Q 033564          100 GVNPTTGNATR  110 (116)
Q Consensus       100 g~~~~~~~~~~  110 (116)
                      |+++..++++.
T Consensus       159 ga~l~~a~~~g  169 (175)
T d2j8ka1         159 GANLEDANLEG  169 (175)
T ss_dssp             TCBCTTCBCTT
T ss_pred             CCCcCCCEEec
Confidence            33444444333

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.46  E-value=2.6e-14  Score=96.99  Aligned_cols=8  Identities=38%  Similarity=0.248  Sum_probs=2.9

Q ss_pred             CCcccccc
Q 033564          102 NPTTGNAT  109 (116)
Q Consensus       102 ~~~~~~~~  109 (116)
                      ++.+++++
T Consensus       156 ~~~ga~l~  163 (175)
T d2j8ka1         156 NLTGANLE  163 (175)
T ss_dssp             BCTTCBCT
T ss_pred             CcCCCCcC
Confidence            33333333