Citrus Sinensis ID: 033565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHEEEEEEEEcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSVFAFVNGLlkdlpdvegdkkfGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKvdldnfestFGFYMLIWKLNYVEYILIHFLR
Flexible Loop (DISEMBL)
msvfafvngllkdlpdvegdkkFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Low Complexity Region (SEG)
MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Disordered region (IsUnstruct)
**VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFL*
Disordered Region (DISOPRED)
*SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Disordered Region (DISEMBL)
MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Disordered Region (DISPRO)
MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	1.0	0.295	0.456	6e-26
B7FA90	404	Probable homogentisate ph	no	no	1.0	0.287	0.448	5e-25
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	1.0	0.282	0.422	3e-24
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	1.0	0.283	0.413	2e-20
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.956	0.287	0.371	3e-11
Q0D576	379	Probable homogentisate ph	no	no	0.956	0.292	0.292	2e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 80/116 (68%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           MS F+ V  L KD+PD+EGDK FG+++  V LG+++V   CV ++ +AY  A++ GA+S 
Sbjct: 278 MSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSP 337

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
           F+ +K++S++GH ILA  LW ++K VDL +       YM IWKL Y EY+L+ FL+
Sbjct: 338 FIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M+ F+ V  L KD+PD+EGD+ FG+K+  V LG++KV  +CV ++ +AY  A++ GA+S+
Sbjct: 289 MTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSA 348

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            + +K  +++GH ILA ILW +S+ +DL +  +   FYM IWKL Y EY+LI  +R
Sbjct: 349 CLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 80/116 (68%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           +S++A V  L KD+PD+EGD+KFG+++L + LG ++V  +CV+++ + YG  ++ GA+S 
Sbjct: 295 VSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSP 354

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            + +KI++++GH +LA +LW  +K VDL +      FYM IWKL+  EY LI   R
Sbjct: 355 ILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 74/116 (63%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M+ ++    L KD+PDVEGDK+ G+ +  V LG+++   +CV+   +A+G  +++GAS S
Sbjct: 294 MTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCS 353

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
               KI + +G+ +LA ILW Q+K VDL +  ST  FYM IWKL Y  + L+  +R
Sbjct: 354 HFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           +++FA V  + KDLPDVEGD+KF + TL   LG   +  L   ++LV Y    +S  S +
Sbjct: 270 VTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY----VSAISLA 325

Query: 61  FMINKI----VSIIGHGILALILWLQSKKVDLDNF--ESTFGFYMLIWKLNYVEYILIHF 114
           F + ++    + I  H ILA  L  Q+  ++  N+  E+  G+Y  IW L Y EY+L  F
Sbjct: 326 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPF 385

Query: 115 L 115
           L
Sbjct: 386 L 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           +++FA V  + KDLPDVEGD+K+ + TL   LG   +  L   +++  Y  A+       
Sbjct: 263 VTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMP 322

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNF--ESTFGFYMLIWKLNYVEYIL 111
               + V +  H  LA+ +  Q+  ++   +  ++   +Y  IW L Y EYI 
Sbjct: 323 QAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWNLFYAEYIF 375

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
219842170	411	homogentisate geranylgeranyl transferase	1.0	0.282	0.508	9e-27
295656253	401	homogentisate geranylgeranyl transferase	1.0	0.289	0.482	9e-27
359476155	397	PREDICTED: probable homogentisate phytyl	1.0	0.292	0.5	3e-26
254596582	407	homogentisate phytyltransferase [Malus x	1.0	0.285	0.474	4e-26
51535420	270	putative homogentisic acid geranylgerany	1.0	0.429	0.456	1e-25
297606269	278	Os06g0646900 [Oryza sativa Japonica Grou	1.0	0.417	0.456	1e-25
302807704	302	hypothetical protein SELMODRAFT_34027 [S	1.0	0.384	0.474	2e-25
33391138	408	homogentisic acid geranylgeranyl transfe	1.0	0.284	0.456	2e-25
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	1.0	0.284	0.456	3e-25
33391144	404	homogentisic acid geranylgeranyl transfe	1.0	0.287	0.456	3e-25

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 85/118 (72%), Gaps = 2/118 (1%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS-- 58
           M  F+    L KD+PDVEGD+ +G+++  V LG+E+VL LCVNM+LVAYG A++ GAS  
Sbjct: 294 MCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSP 353

Query: 59  SSFMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
           SS +  K++++IGH  +A ILW++++ VDL + +S   FYM IWKL Y EY LI F+R
Sbjct: 354 SSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 86/116 (74%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           +S+F  V  L KD+PDV+GD+ FG+++  V LG+++V  LC+ ++L+AY  A++ GASSS
Sbjct: 286 ISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSS 345

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
           F+++K+V++IGH  LA ILW ++  V+L++  S   FYM IWKL Y EY+LI F+R
Sbjct: 346 FLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PDV+GD++FG+++  V LG++KV  LCVNM+L+AYG A + GASSS
Sbjct: 282 MCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSS 341

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            M  K  ++  H  LAL+LW++++ VDL + E+   FYM IWKL Y EY LI  +R
Sbjct: 342 SMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 87/116 (75%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           MS F+ V  L KD+PD++GDK FG+++  V +G+++V  +C++++ +AYG A++ GASS 
Sbjct: 292 MSFFSVVIALFKDIPDIDGDKIFGIRSFTVRMGQKRVFWICISLLEMAYGVAVLLGASSG 351

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
           FM++K V+++GH ILAL+LW ++K VDL++  +   FYM IWKL Y EY+LI  +R
Sbjct: 352 FMLSKCVTVLGHTILALVLWNRAKSVDLNSKAAITSFYMFIWKLFYAEYLLIPLVR 407

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51535420|dbj|BAD37319.1| putative homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group] gi|51535642|dbj|BAD37616.1| putative homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PD++GD+ FG+++L V LG E+V  LC+N++L AYG A+++GASS+
Sbjct: 155 MCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASST 214

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            +   I+++ GHG+LA  LW +++  D++N      FYM IWKL Y EY LI F++
Sbjct: 215 NLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 270

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297606269|ref|NP_001058202.2| Os06g0646900 [Oryza sativa Japonica Group] gi|255677275|dbj|BAF20116.2| Os06g0646900, partial [Oryza sativa Japonica Group]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PD++GD+ FG+++L V LG E+V  LC+N++L AYG A+++GASS+
Sbjct: 163 MCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASST 222

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            +   I+++ GHG+LA  LW +++  D++N      FYM IWKL Y EY LI F++
Sbjct: 223 NLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 278

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302807704|ref|XP_002985546.1| hypothetical protein SELMODRAFT_34027 [Selaginella moellendorffii] gi|302810665|ref|XP_002987023.1| hypothetical protein SELMODRAFT_34021 [Selaginella moellendorffii] gi|300145188|gb|EFJ11866.1| hypothetical protein SELMODRAFT_34021 [Selaginella moellendorffii] gi|300146752|gb|EFJ13420.1| hypothetical protein SELMODRAFT_34027 [Selaginella moellendorffii]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 78/116 (67%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PDVEGD+ FG+++  V LG+EKV  LC+ ++  AY  A+I GA SS
Sbjct: 187 MCFFSVVIALFKDIPDVEGDQTFGIQSFSVRLGQEKVFWLCIGLLEAAYASAVIFGAMSS 246

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            + +KI   +GH ++A ILW++S+ VDL +  +   FYM +WKL Y EY LI F+R
Sbjct: 247 CLWSKIAMTVGHSVIAAILWMRSQSVDLSSKAAISSFYMFVWKLFYAEYFLIPFMR 302

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/116 (45%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PDV+GD+ FG+++L V LG ++V  LC++++L AYG A + GASS+
Sbjct: 293 MCCFSAVIALFKDIPDVDGDRDFGIQSLSVRLGPQRVYQLCISILLTAYGAATLVGASST 352

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            +  KI+++ GHG+LAL LW +++  +++N      FYM IWKL Y EY LI F++
Sbjct: 353 NLFQKIITVSGHGLLALTLWQRAQHFEVENQARVTSFYMFIWKLFYAEYFLIPFVQ 408

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/116 (45%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PD++GD+ FG+++L V LG E+V  LC+N++L AYG A+++GASS+
Sbjct: 293 MCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASST 352

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            +   I+++ GHG+LA  LW +++  D++N      FYM IWKL Y EY LI F++
Sbjct: 353 NLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 408

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/116 (45%), Positives = 81/116 (69%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PD++GD+ FG+++L V LG E+V  LC+N++L AYG A+++GASS+
Sbjct: 289 MCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASST 348

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
            +   I+++ GHG+LA  LW +++  D++N      FYM IWKL Y EY LI F++
Sbjct: 349 NLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 404

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	1.0	0.295	0.456	4.6e-25
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	1.0	0.282	0.422	5.9e-24
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	1.0	0.285	0.431	9.4e-24
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.956	0.282	0.371	3.5e-12

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 53/116 (45%), Positives = 80/116 (68%)

Query:     1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
             MS F+ V  L KD+PD+EGDK FG+++  V LG+++V   CV ++ +AY  A++ GA+S 
Sbjct:   278 MSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSP 337

Query:    61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
             F+ +K++S++GH ILA  LW ++K VDL +       YM IWKL Y EY+L+ FL+
Sbjct:   338 FIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 275 (101.9 bits), Expect = 5.9e-24, P = 5.9e-24
 Identities = 49/116 (42%), Positives = 80/116 (68%)

Query:     1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
             +S++A V  L KD+PD+EGD+KFG+++L + LG ++V  +CV+++ + YG  ++ GA+S 
Sbjct:   295 VSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSP 354

Query:    61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
              + +KI++++GH +LA +LW  +K VDL +      FYM IWKL+  EY LI   R
Sbjct:   355 ILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 273 (101.2 bits), Expect = 9.4e-24, P = 9.4e-24
 Identities = 50/116 (43%), Positives = 80/116 (68%)

Query:     1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
             +S++A V  L KD+PD+EGD+KFG+++L + LG ++V  +CV+++ +AYG  ++ GA+S 
Sbjct:   292 VSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSP 351

Query:    61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
              + +KI++++GH ILA +LW  +K  DL +      FYM IWKL+  EY LI   R
Sbjct:   352 ILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 45/121 (37%), Positives = 67/121 (55%)

Query:     1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
             +++FA V  + KDLPDVEGD+KF + TL   LG   +  L   ++LV Y    +S  S +
Sbjct:   277 VTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY----VSAISLA 332

Query:    61 FMINKI----VSIIGHGILALILWLQSKKVDLDNF--ESTFGFYMLIWKLNYVEYILIHF 114
             F + ++    + I  H ILA  L  Q+  ++  N+  E+  G+Y  IW L Y EY+L  F
Sbjct:   333 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPF 392

Query:   115 L 115
             L
Sbjct:   393 L 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.145   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116       116   0.00091  102 3  11 22  0.39    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  523 (56 KB)
  Total size of DFA:  116 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.45u 0.14s 11.59t   Elapsed:  00:00:00
  Total cpu time:  11.45u 0.14s 11.59t   Elapsed:  00:00:00
  Start:  Thu May  9 19:05:23 2013   End:  Thu May  9 19:05:23 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BRADI0007S00220.1	annotation not avaliable (686 aa)
		(Brachypodium distachyon)
Predicted Functional Partners:
	BRADI3G12690.1	annotation not avaliable (466 aa)			•						0.447
	BRADI5G16380.1	annotation not avaliable (131 aa)			•						0.426
	BRADI3G10250.1	annotation not avaliable (471 aa)			•			•	•		0.409
	BRADI1G54380.1	annotation not avaliable (231 aa)			•						0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	5e-41
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-26
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	9e-06
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-05
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	3e-04
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	0.002
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	0.003

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  136 bits (344), Expect = 5e-41
 Identities = 58/116 (50%), Positives = 84/116 (72%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           M  F+ V  L KD+PDVEGD+ FG+++  V LG+++V  LCVN++ +AY  A++ GASSS
Sbjct: 165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSS 224

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
           F+ +KI++++GHGILA ILW +++ VDL +  +   FYM IWKL Y EY LI  +R
Sbjct: 225 FLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 40/111 (36%), Positives = 65/111 (58%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
           + VF F   + KD+PD+EGD+++ + T  + LGK+ V  L   ++   Y G +  G  S 
Sbjct: 191 VLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSL 250

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYIL 111
             +N    I+ H IL  +LW +S++VDL + ++   FY  IWKL ++EY+L
Sbjct: 251 PTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLL 301

Length = 308

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 26/112 (23%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 1   MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
             ++     ++  + D+EGD+K G+K+L VL G +K L L + ++L +   A++      
Sbjct: 176 AILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLAS---ALLVLLGLL 232

Query: 61  FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILI 112
             +  ++ ++G  + AL+L  Q   VD+ +  + F  + +   L  + +I +
Sbjct: 233 AGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL 284

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 3   VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFM 62
           + +    L  D+ DVEGD+K G++TL V LG+++ L L      +    A++       +
Sbjct: 157 LLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALAL----YALLLAAALLLLLLLLLL 212

Query: 63  INKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYV 107
           +  ++ ++   +LAL L + ++ +   N E     ++ I  L  +
Sbjct: 213 LAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALLFGL 257

Length = 259

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 1   MSVFAF----VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
            +VF F    +  ++ D+ D+EGD+K G+KTL ++LGKE+ L   + + L+ 
Sbjct: 166 YAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLF 217

Length = 285

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 11  LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMI 54
           L D   VEGD++ G+++L V++G ++   + V  + V     + 
Sbjct: 180 LNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 13/27 (48%), Positives = 22/27 (81%)

Query: 10  LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
           ++KD+ D+EGDK  G KTL +++GK++
Sbjct: 172 IMKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13591	307	ubiA prenyltransferase; Provisional	99.38
PRK12872	285	ubiA prenyltransferase; Reviewed	99.3
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.27
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.19
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.17
PRK13105	282	ubiA prenyltransferase; Reviewed	99.14
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.14
PRK12882	276	ubiA prenyltransferase; Reviewed	99.11
PRK13595	292	ubiA prenyltransferase; Provisional	99.11
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.05
PRK12895	286	ubiA prenyltransferase; Reviewed	99.04
PRK12884	279	ubiA prenyltransferase; Reviewed	99.03
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.03
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.03
PRK12888	284	ubiA prenyltransferase; Reviewed	99.01
PRK05951	296	ubiA prenyltransferase; Reviewed	99.0
PRK13106	300	ubiA prenyltransferase; Reviewed	99.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	98.94
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	98.94
PLN00012	375	chlorophyll synthetase; Provisional	98.91
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.91
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	98.86
PRK12876	300	ubiA prenyltransferase; Reviewed	98.85
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	98.84
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	98.76
PRK12871	297	ubiA prenyltransferase; Reviewed	98.74
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.73
PRK12886	291	ubiA prenyltransferase; Reviewed	98.66
PRK12875	282	ubiA prenyltransferase; Reviewed	98.65
PRK12874	291	ubiA prenyltransferase; Reviewed	98.65
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	98.62
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	98.61
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.58
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.57
PRK13592	299	ubiA prenyltransferase; Provisional	98.46
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	98.44
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.42
PLN02922	315	prenyltransferase	98.41
PRK12873	294	ubiA prenyltransferase; Reviewed	98.22
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	98.05
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	97.93
PRK04375	296	protoheme IX farnesyltransferase; Provisional	97.78
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	97.42
PRK13362	306	protoheme IX farnesyltransferase; Provisional	96.8
KOG4581	359	consensus Predicted membrane protein [Function unk	88.41
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	87.25
PLN02776	341	prenyltransferase	80.55

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=4.9e-47  Score=307.04  Aligned_cols=116  Identities=50%  Similarity=0.945  Sum_probs=113.9

Q ss_pred             CcHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 033565            1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILW   80 (116)
Q Consensus         1 ~~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw   80 (116)
                      |++|+.+++++||+||+||||++|++|+|+++|+|+++++|..++.+||++++++|++++..+++++|+.||+++++++|
T Consensus       165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~  244 (280)
T PLN02878        165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILW  244 (280)
T ss_pred             HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 033565           81 LQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR  116 (116)
Q Consensus        81 ~r~~~vdl~~k~ai~~fY~fIWkLFy~EYll~P~~~  116 (116)
                      +|+++||++||++|+|||||||||||+||+++|++|
T Consensus       245 ~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        245 QRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=8.5e-41  Score=270.91  Aligned_cols=115  Identities=35%  Similarity=0.648  Sum_probs=112.1

Q ss_pred             cHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 033565            2 SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWL   81 (116)
Q Consensus         2 ~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~   81 (116)
                      .+++++++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+++++.|+.....+++.+++.||+++++.+|+
T Consensus       192 ~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (308)
T PRK12887        192 LVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWW  271 (308)
T ss_pred             HHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 033565           82 QSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR  116 (116)
Q Consensus        82 r~~~vdl~~k~ai~~fY~fIWkLFy~EYll~P~~~  116 (116)
                      |++++|++||+||+|||||||||||+||+++|++|
T Consensus       272 ~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        272 RSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999986

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.38  E-value=7.9e-13  Score=108.82  Aligned_cols=86  Identities=23%  Similarity=0.234  Sum_probs=72.4

Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565            6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK   85 (116)
Q Consensus         6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~   85 (116)
                      ++++++||++|+|||++.|.+|+|+++|++++.++...+..++|+..++........+...+.+-+-.+-...+|+.+++
T Consensus       193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~  272 (307)
T PRK13591        193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP  272 (307)
T ss_pred             HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence            77889999999999999999999999999999999999999999998877776655666666666667777778877777


Q ss_pred             ccCCCh
Q 033565           86 VDLDNF   91 (116)
Q Consensus        86 vdl~~k   91 (116)
                      .|-+++
T Consensus       273 ~~~~~~  278 (307)
T PRK13591        273 FENEPS  278 (307)
T ss_pred             cccCcH
Confidence            766554

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.30  E-value=3e-11  Score=95.20  Aligned_cols=56  Identities=30%  Similarity=0.485  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS   59 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~   59 (116)
                      ..+.++++||+||+|||++.|++|+|+++|+|++.+++..+...+++..+......
T Consensus       173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T PRK12872        173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG  228 (285)
T ss_pred             HHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677899999999999999999999999999999999999999999888665544

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.27  E-value=9.1e-11  Score=93.58  Aligned_cols=109  Identities=24%  Similarity=0.411  Sum_probs=86.6

Q ss_pred             cHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 033565            2 SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWL   81 (116)
Q Consensus         2 ~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~   81 (116)
                      .+.+.+.+++||+||+||||+.|++|+|+.+|++++.+++.... .+.......+......  ...-..++...+..+++
T Consensus       177 ~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  253 (289)
T COG0382         177 ILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL--GLIYLLGLLVAALLLLY  253 (289)
T ss_pred             HHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999877 5555555455443222  15778888899999999


Q ss_pred             HHhhccCCChhhHHHHHHHHHHHHHHHHHhhh
Q 033565           82 QSKKVDLDNFESTFGFYMLIWKLNYVEYILIH  113 (116)
Q Consensus        82 r~~~vdl~~k~ai~~fY~fIWkLFy~EYll~P  113 (116)
                      |...+|.++++....++..-..+-.+..+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (289)
T COG0382         254 QILIVDVRDPPACFALFDVNLLLGLLLFIGLI  285 (289)
T ss_pred             HHHHhcccChHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999998888888888887776666555443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.19  E-value=2e-10  Score=91.38  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565            6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK   85 (116)
Q Consensus         6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~   85 (116)
                      ....+++|.||.|||++.|++|+|+++|+|++.+++..+..++++...+.+......   ..-..+..+.+..++++.+.
T Consensus       172 ~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g---~~y~~~~~~~~~~l~~~~~~  248 (282)
T TIGR01475       172 AGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG---YIALLALILIGLILAYEHYI  248 (282)
T ss_pred             HHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc---HHHHHHHHHHHHHHHHHHHH
Confidence            355689999999999999999999999999999999988888888877777654332   22234555666778888889


Q ss_pred             ccCCChhhHHH
Q 033565           86 VDLDNFESTFG   96 (116)
Q Consensus        86 vdl~~k~ai~~   96 (116)
                      +|.+|+++..+
T Consensus       249 ~~~~~~~~~~~  259 (282)
T TIGR01475       249 VDPGDQSKIQR  259 (282)
T ss_pred             cCCCCHHHHHH
Confidence            99888776543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.17  E-value=2.5e-10  Score=90.71  Aligned_cols=52  Identities=25%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMI   54 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~   54 (116)
                      +++..+..+||++|+|||++.|.+|+|+++|+|++.+++..++.++|+..+.
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999999999999999999999988888876664

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.14  E-value=2.1e-10  Score=93.05  Aligned_cols=54  Identities=17%  Similarity=0.313  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISG   56 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g   56 (116)
                      +++.+++++||+||+||||+.|.+|+|+++|+|++.+++..+..++++..+..|
T Consensus       171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        171 LWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788899999999999999999999999999999999999999998888555

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.14  E-value=3.3e-10  Score=91.72  Aligned_cols=90  Identities=24%  Similarity=0.230  Sum_probs=70.9

Q ss_pred             HHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 033565            9 GLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDL   88 (116)
Q Consensus         9 aI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl   88 (116)
                      .++.+.+|+|+|++.|++|+|+++|+++..+++. +...+++....+|...  ..+.... .+|++.+..+++|.+.||+
T Consensus       183 d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~~~v~~  258 (289)
T PLN02809        183 DTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQIQTVDL  258 (289)
T ss_pred             HHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHHHHcCC
Confidence            5778889999999999999999999997777774 6666777777777644  3344444 4899999999999999999


Q ss_pred             CChhhH-HHHHHHHH
Q 033565           89 DNFEST-FGFYMLIW  102 (116)
Q Consensus        89 ~~k~ai-~~fY~fIW  102 (116)
                      +|++++ ..|.+..|
T Consensus       259 ~~~~~~~~~F~~n~~  273 (289)
T PLN02809        259 SSRADCNRKFVSNKW  273 (289)
T ss_pred             CCHHHHHHHHHhCCH
Confidence            998876 44554444

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.11  E-value=9.1e-10  Score=87.22  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=55.4

Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565            6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK   85 (116)
Q Consensus         6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~   85 (116)
                      +..+++||+||+|||++.|++|+|+++|+|++.+++..+...+.......-..  ...+....+..=...+..++...+.
T Consensus       171 ~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~  248 (276)
T PRK12882        171 LAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL--STFGLWYLVLVAPADLVMLAAAYRS  248 (276)
T ss_pred             HHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46679999999999999999999999999999999887766655444321111  1112222222222223334445556


Q ss_pred             ccCCChhhH
Q 033565           86 VDLDNFEST   94 (116)
Q Consensus        86 vdl~~k~ai   94 (116)
                      +|.+|+++.
T Consensus       249 ~~~~~~~~~  257 (276)
T PRK12882        249 LKKTDPTAS  257 (276)
T ss_pred             HcCCCHHHH
Confidence            666665444

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.11  E-value=3.7e-10  Score=92.49  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             cHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 033565            2 SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWL   81 (116)
Q Consensus         2 ~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~   81 (116)
                      .+|+.+.+++||+||+||||+.|+||+|+++|+|++.++|..+.+++-.....+.  .+...-   ....-.+.+.-+| 
T Consensus       179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~--~~~~~~---~~~~~~~~~~~~~-  252 (292)
T PRK13595        179 MAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS--RLTALA---LWLICGGMALALW-  252 (292)
T ss_pred             HHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc--chHHHH---HHHHHHHHHHHHh-
Confidence            3577888999999999999999999999999999999999987766655444322  222211   2222223333344 


Q ss_pred             HHhhccCCChhhHHHHHHHHHHHH
Q 033565           82 QSKKVDLDNFESTFGFYMLIWKLN  105 (116)
Q Consensus        82 r~~~vdl~~k~ai~~fY~fIWkLF  105 (116)
                          -|.+..++=..+=.|+|--+
T Consensus       253 ----~~~~~~~~~~~~~~~~~~~~  272 (292)
T PRK13595        253 ----RRPTPETAHRLYPLSIVTPW  272 (292)
T ss_pred             ----cCCCHHHHhccchHHHHHhH
Confidence                45554555555556676443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.05  E-value=1.1e-09  Score=87.17  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS   59 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~   59 (116)
                      +++..+.+.+|++|+|||++.|.+|+|+++|++++.++...+..++|+..+...+..
T Consensus       179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        179 LLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             HHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456667799999999999999999999999999999999999999999888766554

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.04  E-value=1.8e-09  Score=87.71  Aligned_cols=90  Identities=20%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      +.+-.+++|.+|+|+|++.|++|+|+++|++++.+++..+..++.....+.|....   + ..-..|=.+.+..+.+|.+
T Consensus       172 ~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~-~~y~~~~~~~~~~l~~q~~  247 (286)
T PRK12895        172 IAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---T-LWYLAALIIIYTLVIYQHL  247 (286)
T ss_pred             HHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---h-HHHHHHHHHHHHHHHHHHH
Confidence            44556999999999999999999999999999998887777777666666675542   2 2233556677778889999


Q ss_pred             hccCCChhhH-HHHH
Q 033565           85 KVDLDNFEST-FGFY   98 (116)
Q Consensus        85 ~vdl~~k~ai-~~fY   98 (116)
                      .+|.+|.++. ..|+
T Consensus       248 ~~~~~~~~~~~~~~F  262 (286)
T PRK12895        248 IIDPRNPINKRMSFF  262 (286)
T ss_pred             HhcCCCHHHHHHHHH
Confidence            9999988777 4433

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.03  E-value=2.3e-09  Score=84.61  Aligned_cols=54  Identities=24%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHh
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGA   57 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~   57 (116)
                      .+....+.+|++|+|||++.|++|+|+++|+|++.+++..+....++..++.+.
T Consensus       167 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        167 MTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             HHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667899999999999999999999999999999998888877776554443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.03  E-value=1.4e-09  Score=89.86  Aligned_cols=56  Identities=23%  Similarity=0.334  Sum_probs=47.6

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS   59 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~   59 (116)
                      .+++..++||++|+|||++.|+||+|+++|++++++++.....++.+..+..+...
T Consensus       192 ~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~  247 (331)
T PRK12392        192 MAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSW  247 (331)
T ss_pred             HHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667789999999999999999999999999999999887767777666666544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.03  E-value=5.8e-09  Score=79.15  Aligned_cols=37  Identities=41%  Similarity=0.639  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLP   39 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~   39 (116)
                      ++...+....|++|+|||++.|.+|+|+++|++++..
T Consensus       157 ~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  157 LLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            4556667778999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.01  E-value=5e-09  Score=84.46  Aligned_cols=91  Identities=18%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      +....++++++|.|+|++.|++|+|+++|+|++.+++..+..+.++...+.|......+.-.   .+=.+.+..+.+|.+
T Consensus       172 ~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~~~~~~~~~l~~~~~  248 (284)
T PRK12888        172 IGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---IGLAITAGAFAYEHA  248 (284)
T ss_pred             HHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHH
Confidence            44556999999999999999999999999999998887777777766666665443222211   223356667778888


Q ss_pred             hccCCChhhH-HHHH
Q 033565           85 KVDLDNFEST-FGFY   98 (116)
Q Consensus        85 ~vdl~~k~ai-~~fY   98 (116)
                      .+|.+|.+.+ +.|+
T Consensus       249 ~~~~~~~~~~~~~ff  263 (284)
T PRK12888        249 IVSPTDLSRVNRAFF  263 (284)
T ss_pred             HcCccCHHHHHHHHH
Confidence            9999987766 4654

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.00  E-value=7.9e-09  Score=83.35  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=70.7

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      +..+-..++++|+|+|++.|.+|+|+++|+|++ ++-..+...+|+..+.........+.......++......+.++.+
T Consensus       184 ~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~  262 (296)
T PRK05951        184 MALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLR  262 (296)
T ss_pred             HHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            344558999999999999999999999999999 6666677778887776665543333344556666666666677777


Q ss_pred             hccCCChhhHHHHHHH
Q 033565           85 KVDLDNFESTFGFYML  100 (116)
Q Consensus        85 ~vdl~~k~ai~~fY~f  100 (116)
                      ..|.++.+...+.++.
T Consensus       263 ~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        263 KFPPDPDEATVQLFML  278 (296)
T ss_pred             hCcccccHHHHHHHHH
Confidence            7787777777777665

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.00  E-value=3.5e-09  Score=86.33  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQS   83 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~   83 (116)
                      .+.+.+++||.+|+|||++.|+||+|+++| +++.+++..+...+.....+.|.....  +.... .+=.+....+.++.
T Consensus       189 w~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l--g~~y~-~~~~~~~~~l~~~~  264 (300)
T PRK13106        189 WAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL--GPIAI-AATILHGLIMAYAY  264 (300)
T ss_pred             HHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHH
Confidence            345566899999999999999999999999 999998888877777777766664422  11111 22234555666777


Q ss_pred             hhccCCChhhHHHHHHHHHH
Q 033565           84 KKVDLDNFESTFGFYMLIWK  103 (116)
Q Consensus        84 ~~vdl~~k~ai~~fY~fIWk  103 (116)
                      +.++.+ ++.-..|.+..|-
T Consensus       265 ~~~~~~-~~~~~~F~~n~~i  283 (300)
T PRK13106        265 YLASKK-GDFGRAFYYNIYS  283 (300)
T ss_pred             HHhCCc-hHHHHHHHHccHH
Confidence            888877 5555777666554

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=98.94  E-value=7e-09  Score=84.10  Aligned_cols=52  Identities=25%  Similarity=0.429  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMI   54 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~   54 (116)
                      +.+.++.+.+|++|+|||++.|.||+|+++|+|++.+++..++..+|...+.
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~  245 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA  245 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence            4667888999999999999999999999999999999999888877765553

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=98.94  E-value=1.6e-08  Score=80.36  Aligned_cols=50  Identities=24%  Similarity=0.299  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM   53 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i   53 (116)
                      .+..++++||.||.|||++.|++|+|+++|+|++.+++.....++.....
T Consensus       166 ~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~  215 (279)
T PRK09573        166 STWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP  215 (279)
T ss_pred             HHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999998766555554443

>PLN00012 chlorophyll synthetase; Provisional

Probab=98.91  E-value=1.6e-08  Score=84.94  Aligned_cols=51  Identities=22%  Similarity=0.417  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM   53 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i   53 (116)
                      +.+..+.++||++|+|||++.|++|+|+++|++++++++..++.+.....+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999999876666655443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.91  E-value=1.3e-08  Score=81.24  Aligned_cols=85  Identities=18%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565            6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK   85 (116)
Q Consensus         6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~   85 (116)
                      ....++++++|.|+|++.|++|+|+++|++++.+++.......++..+..-......    ..-.++++.+..++++...
T Consensus       179 ~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~~~~~~l~~~~~~  254 (285)
T PRK12847        179 IGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHN----IFYLAILAAAGIFYYQYKL  254 (285)
T ss_pred             HHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHH
Confidence            334488999999999999999999999999999998877666666544322221111    1112444455677778888


Q ss_pred             ccCCChhhH
Q 033565           86 VDLDNFEST   94 (116)
Q Consensus        86 vdl~~k~ai   94 (116)
                      +|.+|+++.
T Consensus       255 ~~~~~~~~~  263 (285)
T PRK12847        255 LDFDNPANC  263 (285)
T ss_pred             hCCCCHHHH
Confidence            988876544

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=98.86  E-value=2.5e-08  Score=79.01  Aligned_cols=42  Identities=31%  Similarity=0.512  Sum_probs=36.8

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHH
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMM   45 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll   45 (116)
                      ..+.+++.||++|+|||++.|++|+|+++|+|++.+++....
T Consensus       166 ~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        166 VNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             HHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            345677999999999999999999999999999999876653

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=98.85  E-value=5.7e-08  Score=79.79  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033565            7 VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKV   86 (116)
Q Consensus         7 ~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~v   86 (116)
                      +..++++.+|+|||++.|++|+|+++|++++.+++..+..++.+..+++|......+.-......-...+..+.+|.+.+
T Consensus       187 g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~  266 (300)
T PRK12876        187 ANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLI  266 (300)
T ss_pred             HHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45689999999999999999999999999998888777777777666667654332211111111112222234555666


Q ss_pred             cCCChhhHHH-HHHHHHH--HHHHHHHhhhh
Q 033565           87 DLDNFESTFG-FYMLIWK--LNYVEYILIHF  114 (116)
Q Consensus        87 dl~~k~ai~~-fY~fIWk--LFy~EYll~P~  114 (116)
                      |.++++.-.. |-+..|=  ++++-.+.-|.
T Consensus       267 ~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~  297 (300)
T PRK12876        267 DKKKSTLEQKFFLGNIYLALSFFVNMIGLFL  297 (300)
T ss_pred             CCCchHHHHHHHHhcCHHHHHHHHHHHHHHc
Confidence            6655444444 4343443  33444443333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=98.84  E-value=2.1e-08  Score=81.56  Aligned_cols=50  Identities=22%  Similarity=0.330  Sum_probs=44.5

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM   53 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i   53 (116)
                      .+..+..++|++|+|||++.|++|+|+++|++++.++...++..+|+..+
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~  250 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI  250 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence            34556799999999999999999999999999999999888888888764

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=98.76  E-value=7e-08  Score=77.24  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      +....++++++|+|+|++.|++|+|+++|++++.+.+.......+.. .+.+....  .+.... .+=.+.+..+.++..
T Consensus       173 ~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~  248 (281)
T TIGR01474       173 TLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL-ALAGLIAG--LGPVYY-LGLAAAALLLIRQIA  248 (281)
T ss_pred             HHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH-HHHHHHhC--CcHHHH-HHHHHHHHHHHHHHH
Confidence            44556889999999999999999999999988765544444333333 33333221  122222 222234555556666


Q ss_pred             hccCCChhhHHH
Q 033565           85 KVDLDNFESTFG   96 (116)
Q Consensus        85 ~vdl~~k~ai~~   96 (116)
                      .+|.+++++..+
T Consensus       249 ~~~~~~~~~~~~  260 (281)
T TIGR01474       249 TLDIRDPENCLK  260 (281)
T ss_pred             HhCCCCHHHHHH
Confidence            777766655433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=98.74  E-value=8.5e-08  Score=77.99  Aligned_cols=86  Identities=16%  Similarity=0.102  Sum_probs=58.5

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      +.....+||++|.|||++.|++|+|+++|++++.++...+..+.....+  +...  ..+.......=.+.+..+.+|.+
T Consensus       188 ~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~~~~~~~~~~~  263 (297)
T PRK12871        188 TMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAGFVLLAGANLY  263 (297)
T ss_pred             HHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHHHHHHHHHHHH
Confidence            5566799999999999999999999999999998776666555554433  3222  22222222222444555667777


Q ss_pred             hccCCChhhH
Q 033565           85 KVDLDNFEST   94 (116)
Q Consensus        85 ~vdl~~k~ai   94 (116)
                      ..+-+++++.
T Consensus       264 ~~~~~~~~~~  273 (297)
T PRK12871        264 LWKEKSQDAG  273 (297)
T ss_pred             HhcCCCHHHH
Confidence            7777777653

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.73  E-value=8.4e-08  Score=77.39  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      .....++++++|+|+|++.|++|+|+++|++++.+++.. ..++.......|....  .+.... .+=.+.+..+.++..
T Consensus       179 ~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~y~-~~~~~~~~~l~~~~~  254 (290)
T PRK12870        179 TLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVGFLAILGVLLE--LHLPFW-IGLAIAAVLWARQYR  254 (290)
T ss_pred             HHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHHHHHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHH
Confidence            445568999999999999999999999999999887763 3333333333444321  111111 122244445566777


Q ss_pred             hc--cCCChhh-HHHHHHHHHH
Q 033565           85 KV--DLDNFES-TFGFYMLIWK  103 (116)
Q Consensus        85 ~v--dl~~k~a-i~~fY~fIWk  103 (116)
                      .+  |..|+++ -+-|.+..|-
T Consensus       255 ~~~~~~~~~~~~~~~F~~n~~~  276 (290)
T PRK12870        255 RLRQANLPPLAYGQLFLQNVWI  276 (290)
T ss_pred             HhcccCCChHHHHHHHHHhhHH
Confidence            77  7777754 4666666654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=98.66  E-value=2.3e-07  Score=74.97  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=53.9

Q ss_pred             HHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033565            8 NGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVD   87 (116)
Q Consensus         8 iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vd   87 (116)
                      ..++++++|.|+|++.|++|+|+++|++++.+++......++....+.+.....  +....+ +=++....+.++.+.++
T Consensus       178 ~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~-~~~~~~~~~l~~~~~~~  254 (291)
T PRK12886        178 FDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL--GPWFLA-GLAVTGILLLYEHWLLR  254 (291)
T ss_pred             HHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHH-HHHHHHHHHHHHHHHhC
Confidence            446899999999999999999999999999998877767777666555543321  111111 11123333335667777


Q ss_pred             CCC
Q 033565           88 LDN   90 (116)
Q Consensus        88 l~~   90 (116)
                      ..|
T Consensus       255 ~~~  257 (291)
T PRK12886        255 GGD  257 (291)
T ss_pred             CCC
Confidence            666

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=98.65  E-value=5.6e-08  Score=78.69  Aligned_cols=54  Identities=22%  Similarity=0.434  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISG   56 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g   56 (116)
                      +++.++.+++|++|+|+|++.|+||+|+++|+|++++++..+.+.+-...+.+|
T Consensus       176 l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        176 LWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            456677899999999999999999999999999999998888777766666655

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=98.65  E-value=3.9e-07  Score=73.76  Aligned_cols=89  Identities=22%  Similarity=0.132  Sum_probs=58.5

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK   84 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~   84 (116)
                      +....++++++|+|+|++.|++|+|+++|++++.+++......+.+.....|......   .....+-.+.+..++++-+
T Consensus       180 ~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~  256 (291)
T PRK12874        180 VAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHY  256 (291)
T ss_pred             HHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Confidence            3445579999999999999999999999999998877655554444444444332111   1222344455566777777


Q ss_pred             hccCCChhhHHH
Q 033565           85 KVDLDNFESTFG   96 (116)
Q Consensus        85 ~vdl~~k~ai~~   96 (116)
                      .++.+++++-..
T Consensus       257 ~~~~~~~~~~~~  268 (291)
T PRK12874        257 LVRKDFKKIDKA  268 (291)
T ss_pred             HhcCCChHHHHH
Confidence            776555554444

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=98.62  E-value=4.8e-07  Score=73.20  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHh
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGA   57 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~   57 (116)
                      +.+..+...++++|+|+|++.|.+|+|+++|+|++.++-..+...+|+..+....
T Consensus       175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~  229 (284)
T TIGR00751       175 LLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML  229 (284)
T ss_pred             HHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677899999999999999999999999999999999999999987776544

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=98.61  E-value=3.1e-07  Score=73.46  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=55.4

Q ss_pred             hcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCh
Q 033565           12 KDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNF   91 (116)
Q Consensus        12 KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k   91 (116)
                      -+++|.|+|++.|++|+|+++|.|++.+++..... ........+.....  +.... .+=.+....+.++.+.+|.+++
T Consensus       182 ~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~y~-~~~~~~~~~~~~~~~~~~~~~~  257 (282)
T PRK12848        182 YAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA-TLALLAWAGWLLGL--GWAYY-WGLLVAAALFVYQQKLIRDRER  257 (282)
T ss_pred             HHhccHhhHHHcCCccccHHhccccHHHHHHHHHH-HHHHHHHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHcCCCCH
Confidence            34779999999999999999999998887754333 33333333432211  22211 2233455566677889998887


Q ss_pred             hhH-HHHHHHHH
Q 033565           92 EST-FGFYMLIW  102 (116)
Q Consensus        92 ~ai-~~fY~fIW  102 (116)
                      ++. ..|++..|
T Consensus       258 ~~~~~~F~~n~~  269 (282)
T PRK12848        258 EACFKAFLNNNW  269 (282)
T ss_pred             HHHHHHHHhCcH
Confidence            654 56665554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=98.58  E-value=1.5e-07  Score=77.05  Aligned_cols=54  Identities=22%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS   58 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~   58 (116)
                      ...+.+.++++|+|+|++.|.+|+|+++|+|++.++-..+..++|+..+.....
T Consensus       202 ~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        202 IANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344569999999999999999999999999999999999999999977654443

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.57  E-value=6e-07  Score=73.45  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=54.9

Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033565            7 VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKV   86 (116)
Q Consensus         7 ~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~v   86 (116)
                      .-..+.+++|.|+|++.|++|+|+++|++++.++......... ...+.+......+--.+...   .+...+.+|-.++
T Consensus       207 ~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~  282 (314)
T PRK12878        207 GYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVL-LMGLAFWLAGVPLLALLGLL---AAAAHLAWQIARL  282 (314)
T ss_pred             HHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHH---HHHHHHHHHHHHc
Confidence            3446789999999999999999999999999988855444443 33333322211111112222   2233466777888


Q ss_pred             cCCChhhHHHHH
Q 033565           87 DLDNFESTFGFY   98 (116)
Q Consensus        87 dl~~k~ai~~fY   98 (116)
                      |.+++++-.+++
T Consensus       283 ~~~~~~~~~~~F  294 (314)
T PRK12878        283 DIDDPDQCLRLF  294 (314)
T ss_pred             ccCChHHHHHHH
Confidence            887766543333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.46  E-value=7.3e-07  Score=73.64  Aligned_cols=47  Identities=13%  Similarity=0.092  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHH
Q 033565            3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGG   51 (116)
Q Consensus         3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~   51 (116)
                      +.+++.||.||+|| |||++. .+|+|+++|+|++.+++..+..++.+.
T Consensus       186 l~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        186 FPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence            45778899999999 899975 999999999999999999887766554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=98.44  E-value=6.8e-07  Score=72.36  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS   58 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~   58 (116)
                      .+..+-...+++|+|.|++.|.+|+|+++|+|++.++-..+...+|+..+..-..
T Consensus       173 ~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       173 ATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             HHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455668999999999999999999999999999999999999999987755443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=98.42  E-value=8e-07  Score=72.74  Aligned_cols=55  Identities=16%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 033565            4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS   58 (116)
Q Consensus         4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~   58 (116)
                      .+..+-...+++|+|.|++.|.+|+|+++|+|++.++-..+...+|+..+.....
T Consensus       186 l~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        186 ATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL  240 (304)
T ss_pred             HHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455568899999999999999999999999999999999999999988765544

>PLN02922 prenyltransferase

Probab=98.41  E-value=1.8e-06  Score=70.93  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=48.5

Q ss_pred             HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565            5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS   59 (116)
Q Consensus         5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~   59 (116)
                      +..+-...+++|+|.|++.|.+|+|+++|+|++.++-..+...+|+..+...+..
T Consensus       201 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  255 (315)
T PLN02922        201 TTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK  255 (315)
T ss_pred             HHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455689999999999999999999999999999999999999999887665543

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.22  E-value=6.4e-06  Score=67.45  Aligned_cols=92  Identities=12%  Similarity=-0.019  Sum_probs=64.2

Q ss_pred             HHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033565            8 NGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVD   87 (116)
Q Consensus         8 iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vd   87 (116)
                      -.++++++|.|+|++.|++|+|+++|+ ++...+..+..++......+|.....  +.... .+=++.+..+.+|.+.+|
T Consensus       186 ~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l--~~~y~-~~~~~~~~~l~~~~~~~~  261 (294)
T PRK12873        186 FDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQV--GFIFW-PFWLIASIGMQRDILKLF  261 (294)
T ss_pred             HHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhC
Confidence            347899999999999999999999996 56666666666666666666765432  11222 233344566777888898


Q ss_pred             CCC---hhhHHHHHHHHHH
Q 033565           88 LDN---FESTFGFYMLIWK  103 (116)
Q Consensus        88 l~~---k~ai~~fY~fIWk  103 (116)
                      .++   ++....|.+..|-
T Consensus       262 ~~~~~~~~c~~~F~~n~~~  280 (294)
T PRK12873        262 PEKQSIKTIGNHFSNQVIL  280 (294)
T ss_pred             cCcccHHHHHHHHHhccHH
Confidence            887   4455888887774

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=98.05  E-value=3e-05  Score=62.03  Aligned_cols=89  Identities=13%  Similarity=-0.044  Sum_probs=49.0

Q ss_pred             cCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCChh
Q 033565           13 DLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFE   92 (116)
Q Consensus        13 DieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k~   92 (116)
                      +..|.|.|++.|++|+|+++|+|++.+++..+..+........+. .  ..+....+..=...+..+..+.+.++-++++
T Consensus       180 ~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~--~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~  256 (279)
T PRK12869        180 ALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-Y--YIGLIGLILVAILSAALMATSIRALLNPTKE  256 (279)
T ss_pred             HHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-h--hccHHHHHHHHHHHHHHHHHHHHHhhCCChH
Confidence            445788899999999999999999998876655444333333332 1  1122222222122233444544555544433


Q ss_pred             -hHHHHHHHHHHH
Q 033565           93 -STFGFYMLIWKL  104 (116)
Q Consensus        93 -ai~~fY~fIWkL  104 (116)
                       +-+.|..-+|-+
T Consensus       257 ~~~~~f~~s~~~l  269 (279)
T PRK12869        257 EAWKMFKASSPYL  269 (279)
T ss_pred             HHHHHHHHHHHHH
Confidence             334444444443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=97.93  E-value=9.4e-05  Score=58.86  Aligned_cols=89  Identities=15%  Similarity=0.040  Sum_probs=51.2

Q ss_pred             CCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCC-Ch-
Q 033565           14 LPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLD-NF-   91 (116)
Q Consensus        14 ieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~-~k-   91 (116)
                      .+|.|.|++.|++|+|+++|.|++.+++............+.+....  .+....+.+=.+.+..++++.+.++.+ ++ 
T Consensus       180 ~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~  257 (280)
T TIGR01473       180 LKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRDPTDRK  257 (280)
T ss_pred             HHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            57888999999999999999999988777655444444333333221  122222222233344455555666555 33 


Q ss_pred             hhHHHHHHHHHHH
Q 033565           92 ESTFGFYMLIWKL  104 (116)
Q Consensus        92 ~ai~~fY~fIWkL  104 (116)
                      .+-+.|..-.|-+
T Consensus       258 ~~~~~f~~s~~~~  270 (280)
T TIGR01473       258 KARKLFKFSLIYL  270 (280)
T ss_pred             HHHHHHHHHHHHH
Confidence            2344555544443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=97.78  E-value=0.00027  Score=57.01  Aligned_cols=37  Identities=14%  Similarity=0.042  Sum_probs=28.6

Q ss_pred             HhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHH
Q 033565           11 LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYG   50 (116)
Q Consensus        11 ~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~   50 (116)
                      +||.||   |++.|++|+|+++|.+++.+++.....+.-.
T Consensus       189 ~~d~~D---~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~  225 (296)
T PRK04375        189 IFRKDD---YAAAGIPMLPVVKGIRVTKRQILLYTVLLVA  225 (296)
T ss_pred             HHHHhh---HHHcCCCccceeeCHHHHHHHHHHHHHHHHH
Confidence            566555   6999999999999999998877655444443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=97.42  E-value=0.0021  Score=53.50  Aligned_cols=49  Identities=33%  Similarity=0.400  Sum_probs=43.9

Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHH
Q 033565            7 VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMIS   55 (116)
Q Consensus         7 ~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~   55 (116)
                      .+-....+.|+|-|++.|-+|+|+++|++++..+-..++..+|+..++.
T Consensus       191 ~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~  239 (303)
T COG1575         191 NILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF  239 (303)
T ss_pred             HHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHH
Confidence            3447889999999999999999999999999999999999999887753

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=96.80  E-value=0.011  Score=48.31  Aligned_cols=33  Identities=18%  Similarity=0.006  Sum_probs=27.6

Q ss_pred             HhcCCChhhhHhcCCccchhhHhHhhHHHHHHH
Q 033565           11 LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVN   43 (116)
Q Consensus        11 ~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~   43 (116)
                      .+.++|.|+|++.|++|+|++.|+|++.+.+..
T Consensus       189 ~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~  221 (306)
T PRK13362        189 AIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVL  221 (306)
T ss_pred             HHHHHhHhhHHHCCCeeeceecChHHHHHHHHH
Confidence            356777888899999999999999999885543

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=88.41  E-value=0.6  Score=38.83  Aligned_cols=52  Identities=21%  Similarity=0.323  Sum_probs=43.2

Q ss_pred             hcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 033565           12 KDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMI   63 (116)
Q Consensus        12 KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~   63 (116)
                      ..-.|.|.||+.||-|+++.+|+..+..+-..++..-|..-.+.|.-.+-++
T Consensus       249 nntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~  300 (359)
T KOG4581|consen  249 NNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISF  300 (359)
T ss_pred             CCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999988888877788888988887777654443

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=87.25  E-value=1.3  Score=37.49  Aligned_cols=86  Identities=22%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             CCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhh
Q 033565           14 LPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFES   93 (116)
Q Consensus        14 ieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k~a   93 (116)
                      =+|-+-|-+-|+++=+.++|++.-.|+ .++-....+..-++|..+-..|. -...  -+..+.=|-++-.+||++|+..
T Consensus       246 HQDK~dDvk~gvkSTALrfG~nTK~wl-~gf~a~~ia~La~aG~~s~q~~p-yy~~--lg~~~~~L~~~i~~vdiDnp~d  321 (353)
T KOG1381|consen  246 HQDKRDDVKIGVKSTALRFGDNTKPWL-SGFGAAQIASLAAAGIASDQTWP-YYAA--LGAVAARLGSQIYKVDIDNPSD  321 (353)
T ss_pred             cccchhhhHhcchhhhhhcCCCCchHH-hhhhHHHHHHHHHhhhccCCCch-HHHH--HHHHHHHHHhheeeeecCChHH
Confidence            368888999999999999996655554 44555555555566777766552 2222  3345556778889999999665


Q ss_pred             H-HHHHHHHHH
Q 033565           94 T-FGFYMLIWK  103 (116)
Q Consensus        94 i-~~fY~fIWk  103 (116)
                      . ..|=..+|-
T Consensus       322 C~k~f~sN~nt  332 (353)
T KOG1381|consen  322 CWKKFKSNSNT  332 (353)
T ss_pred             HHHHHHhcCcc
Confidence            4 445445554

>PLN02776 prenyltransferase

Probab=80.55  E-value=28  Score=29.46  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=20.8

Q ss_pred             hhhHhcCCccchhhH--hHhhHHHHHHHHHHHHH
Q 033565           18 EGDKKFGMKTLCVLL--GKEKVLPLCVNMMLVAY   49 (116)
Q Consensus        18 eGD~~~gi~Tlpv~l--G~~~~~~l~~~ll~~~y   49 (116)
                      |-|++-|++.+|+.-  |++.+..+......+.-
T Consensus       177 dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~  210 (341)
T PLN02776        177 DDYAAGGYRMLSLADATGRRTALVALRNCLYLAP  210 (341)
T ss_pred             HHHHhCCCcccCccccchHHHHHHHHHHHHHHHH
Confidence            357799999999976  45555555544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00