Citrus Sinensis ID: 033572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGTEDS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQnakngsfylQSKVHRAKECLETVYQKkhqgteds
Flexible Loop (DISEMBL)
MAARIIAQLIVMGSGIMARAVVQAYRQALAnasksgvaqetVQNIRRASKMMAEPEARqilgvteqssWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETvyqkkhqgteds
Low Complexity Region (SEG)
MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGTEDS
Disordered region (IsUnstruct)
***RIIAQLIVMGSGIMARAVVQAYRQALA*****************************ILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVY**********
Disordered Region (DISOPRED)
*AARIIAQLIVMGSGIMARAVVQAYRQAL****************************RQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKEC***************
Disordered Region (DISEMBL)
MAARIIAQLIVMGSGIMARAVVQAYRQAL************VQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVY**********
Disordered Region (DISPRO)
MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVA************MMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKH******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGTEDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9C1W5	128	Mitochondrial import inne	yes	no	0.922	0.835	0.387	1e-11
Q9VF08	141	Mitochondrial import inne	no	no	0.844	0.695	0.387	1e-10
Q7S6S4	141	Mitochondrial import inne	N/A	no	0.948	0.780	0.401	1e-10
Q6NTU3	125	Mitochondrial import inne	N/A	no	0.939	0.872	0.373	9e-10
Q54SV6	113	Mitochondrial import inne	yes	no	0.870	0.893	0.370	2e-09
Q4I375	138	Mitochondrial import inne	yes	no	0.879	0.739	0.401	4e-09
Q5M995	122	Mitochondrial import inne	N/A	no	0.818	0.778	0.414	5e-09
Q9CQV1	125	Mitochondrial import inne	yes	no	0.862	0.8	0.415	8e-09
Q9Y3D7	125	Mitochondrial import inne	no	no	0.948	0.88	0.406	1e-08
Q5XGJ0	125	Mitochondrial import inne	yes	no	0.827	0.768	0.4	2e-08

>sp|Q9C1W5|TIM16_SCHPO Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 9/116 (7%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQ----ETVQNIRRASKMMAEPEAR 58
            R + + I++GS +M++A VQAY+Q +ANA++    Q    ++   +RR    M   EA 
Sbjct: 4   PRAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE--MTIQEAG 61

Query: 59  QILGVTEQSSWE-EILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKHQ 111
            IL +  +S  E E+ K++  +FE N   K GSFYLQSKV RA E L++   +K Q
Sbjct: 62  SILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQ 117

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. In the complex, it is required to regulate activity of mtHSP70 (ssc1) via its interaction with PAM18/TIM14. May act by positioning pam18/tim14 in juxtaposition to mtHSP70 at the translocon to maximize ATPase stimulation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VF08|TIM16_DROME Mitochondrial import inner membrane translocase subunit Tim16 OS=Drosophila melanogaster GN=blp PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 13/111 (11%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALAN----ASKSGVAQETVQ----NIRRASKMMAE 54
           A+ IAQ+IV+G+  + RA  +A RQ +A     A ++G  ++  +    N+R     M  
Sbjct: 2   AKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAESNLRTG---MTL 58

Query: 55  PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLE 103
            EA+QIL + +  + + I K Y++LF+ N  +K GSFY+QSKV RAKE L+
Sbjct: 59  EEAKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSKVFRAKERLD 109

Regulates ATP-dependent protein translocation into the mitochondrial matrix (By similarity). Essential for larval development.

Drosophila melanogaster (taxid: 7227)

>sp|Q7S6S4|TIM16_NEUCR Mitochondrial import inner membrane translocase subunit tim-16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pam-16 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 12/122 (9%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN--IRRAS--KMMAEPE 56
           MA R+I Q++V+GS ++ RA  +AY+QA A +S+   AQ+   N    RAS    M   E
Sbjct: 1   MAYRLITQVVVVGSRVLGRAFAEAYKQAAA-SSQYQRAQQKNGNAATGRASLTSGMTLDE 59

Query: 57  ARQILGVTEQ-----SSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK 109
           A +IL V +      ++ EE+++++  LF+ N   K GSFYLQSKV RA+E LE   + K
Sbjct: 60  ACKILNVNKPADGTAANMEEVMERFKRLFDANDPEKGGSFYLQSKVVRARERLEAEIKPK 119

Query: 110 HQ 111
            +
Sbjct: 120 ME 121

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. In the complex, it is required to regulate activity of mtHSP70 (ssc-1) via its interaction with PAM18/TIM14. May act by positioning pam-18/tim-14 in juxtaposition to mtHSP70 at the translocon to maximize ATPase stimulation.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6NTU3|TI16A_XENLA Mitochondrial import inner membrane translocase subunit tim16-A OS=Xenopus laevis GN=pam16-a PE=2 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 17/126 (13%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALANA-------SKSGVAQETVQNIRRASKMMAEP 55
           A+ +AQ++VMG  ++ RA  +A RQ  A +        ++G     V ++   S      
Sbjct: 2   AKYLAQIVVMGMQVVGRAFTRALRQEFAASKVAAEARGRAGTESAAVSSLSGISLQ---- 57

Query: 56  EARQILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLE---TVYQKKH 110
           EA+QIL V++ +  EEI K Y++LF+ N K   GSFYLQSKV RAKE L+    +  K H
Sbjct: 58  EAQQILNVSKLTP-EEIQKNYEHLFKVNDKGLGGSFYLQSKVVRAKERLDQEMEIQSKTH 116

Query: 111 QGTEDS 116
           +  E++
Sbjct: 117 KPKEET 122

Regulates ATP-dependent protein translocation into the mitochondrial matrix.

Xenopus laevis (taxid: 8355)

>sp|Q54SV6|TIM16_DICDI Mitochondrial import inner membrane translocase subunit tim16 OS=Dictyostelium discoideum GN=timm16 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 7/108 (6%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQI 60
           MAAR+IA+++     ++ R++  AY+QAL  A     A     +++     M+  EAR+I
Sbjct: 1   MAARLIAKIVFTSGTVLVRSIQMAYKQALLQAESGMGAAAGSMDVKSK---MSPIEARKI 57

Query: 61  LGV--TEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLET 104
           LG+   E  S E+I KKY+ L   N     GS YLQ K+  AK CL +
Sbjct: 58  LGLENVETVSKEDIDKKYNELLTINDPKDGGSEYLQIKISGAKHCLHS 105

Regulates ATP-dependent protein translocation into the mitochondrial matrix.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4I375|TIM16_GIBZE Mitochondrial import inner membrane translocase subunit TIM16 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PAM16 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKM---MAEPEA 57
           MA + +    + GS I+ R+ V AY+QA A AS    AQ    N    + +   M   EA
Sbjct: 1   MAHKFVVTAFLTGSRILGRSFVAAYKQAQA-ASAYQRAQVKAGNTTGGASLSSGMTLDEA 59

Query: 58  RQILGVTE----QSSWEEILKKYDNLFEQNA--KNGSFYLQSKVHRAKECLE 103
            +IL V      Q++ EE+L +Y  LF+ N   K GSFYLQSK+ RAKE  E
Sbjct: 60  CKILNVKPPAGGQANVEEVLSRYKRLFDANDPQKGGSFYLQSKIVRAKERFE 111

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. In the complex, it is required to regulate activity of mtHSP70 (SSC1) via its interaction with PAM18/TIM14. May act by positioning PAM18/TIM14 in juxtaposition to mtHSP70 at the translocon to maximize ATPase stimulation.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q5M995|TI16B_XENLA Mitochondrial import inner membrane translocase subunit tim16-B OS=Xenopus laevis GN=pam16-b PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 16/111 (14%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALANASKS--------GVAQETVQNIRRASKMMAE 54
           A+ +AQ+++MG  ++ RA  +A RQ  A ASK+        G     V ++   S     
Sbjct: 2   AKYLAQIVLMGVQVVGRAFTRALRQEFA-ASKTAAEARGRAGTESAAVSSLSGISFQ--- 57

Query: 55  PEARQILGVTEQSSWEEILKKYDNLFEQNAK--NGSFYLQSKVHRAKECLE 103
            EA+QIL V++ +  EEI K Y++LF+ N K   GSFYLQSKV RAKE L+
Sbjct: 58  -EAQQILNVSKLTP-EEIQKNYEHLFKVNDKAVGGSFYLQSKVVRAKERLD 106

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May be required to regulate the ATP-dependent activity.

Xenopus laevis (taxid: 8355)

>sp|Q9CQV1|TIM16_MOUSE Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 6/106 (5%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAE---PEARQ 59
           A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+    +   A+  ++     EA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query: 60  ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLE 103
           IL V++ S  EE+ K Y++LF+ N K+  GSFYLQSKV RAKE L+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLD 106

Regulates ATP-dependent protein translocation into the mitochondrial matrix. Inhibits DNAJC19 stimulation of HSPA9/Mortalin ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q9Y3D7|TIM16_HUMAN Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 8/118 (6%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAE---PEARQ 59
           A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+    +   A+  ++     EA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query: 60  ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
           IL V++ S  EE+ K Y++LF+ N K+  GSFYLQSKV RAKE L+   + K Q  ED
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDE--ELKIQAQED 116

Regulates ATP-dependent protein translocation into the mitochondrial matrix. Inhibits DNAJC19 stimulation of HSPA9/Mortalin ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q5XGJ0|TIM16_XENTR Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis GN=pam16 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 14/110 (12%)

Query: 3   ARIIAQLIVMGSGIMARAVVQAYRQALANASKS-------GVAQETVQNIRRASKMMAEP 55
           A+ +AQ++VMG  ++ RA  +A RQ  A +  +       G     V ++   S      
Sbjct: 2   AKYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQ---- 57

Query: 56  EARQILGVTEQSSWEEILKKYDNLFEQNAK--NGSFYLQSKVHRAKECLE 103
           EA+QIL V++ +  EEI K Y++LF+ N K   GSFYLQSKV RAKE L+
Sbjct: 58  EAQQILNVSKLTP-EEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLD 106

Regulates ATP-dependent protein translocation into the mitochondrial matrix.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
317106618	116	JHL07K02.15 [Jatropha curcas]	0.974	0.974	0.850	2e-50
224136344	114	predicted protein [Populus trichocarpa]	0.974	0.991	0.831	1e-49
224122218	114	predicted protein [Populus trichocarpa]	0.974	0.991	0.805	4e-48
147785839	108	hypothetical protein VITISV_032387 [Viti	0.905	0.972	0.876	1e-47
297734513	116	unnamed protein product [Vitis vinifera]	0.905	0.905	0.876	1e-47
225456497	191	PREDICTED: mitochondrial import inner me	0.905	0.549	0.876	2e-47
351723177	116	uncharacterized protein LOC100527414 pre	0.974	0.974	0.807	2e-46
414081619	114	TXR1-like protein [Solanum tuberosum]	0.965	0.982	0.785	3e-46
356559625	116	PREDICTED: mitochondrial import inner me	0.974	0.974	0.807	3e-46
225433756	120	PREDICTED: mitochondrial import inner me	0.965	0.933	0.805	6e-46

>gi|317106618|dbj|BAJ53125.1| JHL07K02.15 [Jatropha curcas]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 105/114 (92%), Gaps = 1/114 (0%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQI 60
           MAA+++A L+VMGSGI+ARA VQ YRQALANASKSGVAQETVQNIRRA ++MAEPEARQI
Sbjct: 1   MAAKLLANLLVMGSGILARAFVQGYRQALANASKSGVAQETVQNIRRAGEIMAEPEARQI 60

Query: 61  LGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKK-HQGT 113
           LGVTEQS+WEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLE  YQKK H  T
Sbjct: 61  LGVTEQSTWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLEAAYQKKSHNAT 114

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136344|ref|XP_002322306.1| predicted protein [Populus trichocarpa] gi|222869302|gb|EEF06433.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 102/113 (90%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQI 60
           MAAR++A L+VMGSGIM RA  QAYRQALANASKSGVAQETVQNIRR SKMMAEPEARQ+
Sbjct: 1   MAARLLANLLVMGSGIMVRAFAQAYRQALANASKSGVAQETVQNIRRGSKMMAEPEARQV 60

Query: 61  LGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGT 113
           LG+TE S+WEEIL+KYD LFE NAKNGSFYLQSKVHRAKECLE VYQKK +G 
Sbjct: 61  LGITEHSTWEEILQKYDKLFENNAKNGSFYLQSKVHRAKECLEEVYQKKAEGN 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122218|ref|XP_002318780.1| predicted protein [Populus trichocarpa] gi|222859453|gb|EEE97000.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 101/113 (89%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQI 60
           MAAR++A L+VMGSGIM RA  QAYRQALANASKSGVA ETVQNIRR SKM++EPEARQI
Sbjct: 1   MAARLLANLLVMGSGIMVRAFAQAYRQALANASKSGVAHETVQNIRRGSKMISEPEARQI 60

Query: 61  LGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGT 113
           LG+TE S+WEEIL+KYD LFE NAKNGSFYLQSKVHRAKECLE +YQKK +G 
Sbjct: 61  LGITEHSTWEEILQKYDKLFENNAKNGSFYLQSKVHRAKECLEELYQKKAEGN 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785839|emb|CAN73075.1| hypothetical protein VITISV_032387 [Vitis vinifera]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 101/105 (96%)

Query: 2   AARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQIL 61
           AA+I+A L+V+GSGI+ARA+VQAYRQALANASKSGVAQETVQNIRR SK+MAE EARQIL
Sbjct: 4   AAKILANLVVIGSGILARALVQAYRQALANASKSGVAQETVQNIRRGSKIMAELEARQIL 63

Query: 62  GVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVY 106
           GVTE SSWEEIL+KYDNLFEQNAKNGSFYLQSKVHRAKECLE+VY
Sbjct: 64  GVTEHSSWEEILQKYDNLFEQNAKNGSFYLQSKVHRAKECLESVY 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734513|emb|CBI15760.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 101/105 (96%)

Query: 2   AARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQIL 61
           AA+I+A L+V+GSGI+ARA+VQAYRQALANASKSGVAQETVQNIRR SK+MAE EARQIL
Sbjct: 12  AAKILANLVVIGSGILARALVQAYRQALANASKSGVAQETVQNIRRGSKIMAELEARQIL 71

Query: 62  GVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVY 106
           GVTE SSWEEIL+KYDNLFEQNAKNGSFYLQSKVHRAKECLE+VY
Sbjct: 72  GVTEHSSWEEILQKYDNLFEQNAKNGSFYLQSKVHRAKECLESVY 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456497|ref|XP_002280936.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Vitis vinifera]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 101/105 (96%)

Query: 2   AARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQIL 61
           AA+I+A L+V+GSGI+ARA+VQAYRQALANASKSGVAQETVQNIRR SK+MAE EARQIL
Sbjct: 87  AAKILANLVVIGSGILARALVQAYRQALANASKSGVAQETVQNIRRGSKIMAELEARQIL 146

Query: 62  GVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVY 106
           GVTE SSWEEIL+KYDNLFEQNAKNGSFYLQSKVHRAKECLE+VY
Sbjct: 147 GVTEHSSWEEILQKYDNLFEQNAKNGSFYLQSKVHRAKECLESVY 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723177|ref|NP_001235734.1| uncharacterized protein LOC100527414 precursor [Glycine max] gi|255632292|gb|ACU16504.1| unknown [Glycine max]

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 102/114 (89%), Gaps = 1/114 (0%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN-IRRASKMMAEPEARQ 59
           MAA+I+A LIVMG GI+ARAVVQAYRQAL NASK+GVAQET+QN +RRASK+M E EARQ
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTMRRASKVMTEQEARQ 60

Query: 60  ILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGT 113
           ILGVTE++ WEEI+KKYDNLFE NAKNGSFYLQSKVHRAKECLE V Q K QGT
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGT 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414081619|gb|AFW98255.1| TXR1-like protein [Solanum tuberosum]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 99/112 (88%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQI 60
           MAARI+A +I+MGSGIMARA  QAYRQAL NASK+GVAQE VQNIRRASK M E EARQ+
Sbjct: 1   MAARILANIIIMGSGIMARAFAQAYRQALTNASKNGVAQEAVQNIRRASKTMTEVEARQV 60

Query: 61  LGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQG 112
           LGV E SSWE++L+KYDNLFE NAKNGSFYLQSKVHRAKECLE++YQ K +G
Sbjct: 61  LGVAEHSSWEDVLQKYDNLFESNAKNGSFYLQSKVHRAKECLESLYQSKAEG 112

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559625|ref|XP_003548099.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim-16-like [Glycine max]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 102/114 (89%), Gaps = 1/114 (0%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN-IRRASKMMAEPEARQ 59
           MAA+I+A LIVMG GI+ARAVVQAYRQAL NASK+GVAQET+QN IRRASK+M E EAR+
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTIRRASKVMTEQEARR 60

Query: 60  ILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGT 113
           ILGVTE++ WEEI+KKYDNLFE NAKNGSFYLQSKVHRAKECLE V Q K QGT
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGT 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433756|ref|XP_002267730.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Vitis vinifera]

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 102/113 (90%), Gaps = 1/113 (0%)

Query: 2   AARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN-IRRASKMMAEPEARQI 60
           A++I+A LIVMGSGI+ARA+VQAYRQALANASKSGVAQET+QN +RR SK M E EARQI
Sbjct: 6   ASKILANLIVMGSGILARALVQAYRQALANASKSGVAQETIQNTVRRGSKAMMEQEARQI 65

Query: 61  LGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGT 113
           LGVTEQS+WEEIL+KYD LFE+NAKNGSFYLQSKVHRAKECLE V+Q   QGT
Sbjct: 66  LGVTEQSTWEEILQKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHQGNSQGT 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2081152	116	TXR1 "THAXTOMIN A RESISTANT 1"	0.974	0.974	0.745	1.1e-39
TAIR|locus:2159228	113	AT5G61880 [Arabidopsis thalian	0.922	0.946	0.759	2.6e-38
POMBASE|SPBC713.10	128	tim16 "TIM23 translocase compl	0.931	0.843	0.389	1.6e-13
UNIPROTKB|F2Z4I9	125	PAM16 "Uncharacterized protein	0.948	0.88	0.415	5.6e-13
UNIPROTKB|F1RK50	124	LOC100513918 "Uncharacterized	0.948	0.887	0.423	9.1e-13
UNIPROTKB|I3L0X9	137	PAM16 "Mitochondrial import in	0.948	0.802	0.415	1.2e-12
UNIPROTKB|I3L3T0	145	PAM16 "Mitochondrial import in	0.948	0.758	0.415	1.2e-12
UNIPROTKB|Q9Y3D7	125	PAM16 "Mitochondrial import in	0.948	0.88	0.415	1.2e-12
UNIPROTKB|F2Z4M1	126	PAM16 "Uncharacterized protein	0.853	0.785	0.435	2.4e-12
RGD|1598163	125	Pam16 "presequence translocase	0.948	0.88	0.398	2.4e-12

TAIR|locus:2081152 TXR1 "THAXTOMIN A RESISTANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 85/114 (74%), Positives = 97/114 (85%)

Query:     1 MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN-IRRASKMMAEPEARQ 59
             MA R++A LIVMGSGI+ RAV QAYRQALANASKSGVAQE +QN +R+A K + E EARQ
Sbjct:     1 MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGT 113
             ILGVTE++SWEEIL+KYD LFE NAK GSFYLQSKVHRAKECLE VY+ +  GT
Sbjct:    61 ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGT 114

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2159228 AT5G61880 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 82/108 (75%), Positives = 93/108 (86%)

Query:     1 MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQI 60
             MAAR++A +IVMGSGI+ARA  QAYRQALANASK+GVA E  Q I+R   +  E EARQI
Sbjct:     1 MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQTIKRGLTI-GEAEARQI 59

Query:    61 LGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQK 108
             LGVTE+SSW+EILKKYD LFE+NA+NGSFYLQSKVHRAKECLET YQK
Sbjct:    60 LGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQK 107

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

POMBASE|SPBC713.10 tim16 "TIM23 translocase complex subunit Tim16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 44/113 (38%), Positives = 65/113 (57%)

Query:     4 RIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKM--MAEPEARQIL 61
             R + + I++GS +M++A VQAY+Q +ANA++    Q        A +   M   EA  IL
Sbjct:     5 RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGEMTIQEAGSIL 64

Query:    62 GVTEQSSWE-EILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKHQ 111
              +  +S  E E+ K++  +FE N   K GSFYLQSKV RA E L++   +K Q
Sbjct:    65 NIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQ 117

GO:0001405 "presequence translocase-associated import motor" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0030150 "protein import into mitochondrial matrix" evidence=ISS

UNIPROTKB|F2Z4I9 PAM16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 49/118 (41%), Positives = 72/118 (61%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAE---PEARQ 59
             A+ +AQ+IVMG+ ++ RA  +A RQ  A +  +  A+    +   A+  ++     EA+Q
Sbjct:     2 AKYLAQIIVMGAQVVGRAFARALRQEFAASRAAADARGRAGHQSAATSNLSGLSLQEAQQ 61

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
             IL V++ S  EEI K Y++LF+ N K+  GSFYLQSKV RAKE LE   + + Q  ED
Sbjct:    62 ILNVSKLSP-EEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLEE--ELRIQAQED 116

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F1RK50 LOC100513918 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 50/118 (42%), Positives = 71/118 (60%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETV-QNIRRASKM--MAEPEARQ 59
             A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+         AS +  ++  EA+Q
Sbjct:     1 AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHQSAAASNLSGLSLQEAQQ 60

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
             IL V++ S  EEI K Y++LF+ N K+  GSFYLQSKV RAKE LE   + + Q  ED
Sbjct:    61 ILNVSKLSP-EEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLEE--ELRIQAQED 115

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|I3L0X9 PAM16 "Mitochondrial import inner membrane translocase subunit TIM16" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 49/118 (41%), Positives = 71/118 (60%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETV-QNIRRASKM--MAEPEARQ 59
             A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+         AS +  ++  EA+Q
Sbjct:    14 AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 73

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
             IL V++ S  EE+ K Y++LF+ N K+  GSFYLQSKV RAKE L+   + K Q  ED
Sbjct:    74 ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDE--ELKIQAQED 128

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|I3L3T0 PAM16 "Mitochondrial import inner membrane translocase subunit TIM16" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 49/118 (41%), Positives = 71/118 (60%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETV-QNIRRASKM--MAEPEARQ 59
             A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+         AS +  ++  EA+Q
Sbjct:    22 AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 81

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
             IL V++ S  EE+ K Y++LF+ N K+  GSFYLQSKV RAKE L+   + K Q  ED
Sbjct:    82 ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDE--ELKIQAQED 136

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|Q9Y3D7 PAM16 "Mitochondrial import inner membrane translocase subunit TIM16" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 49/118 (41%), Positives = 71/118 (60%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETV-QNIRRASKM--MAEPEARQ 59
             A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+         AS +  ++  EA+Q
Sbjct:     2 AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
             IL V++ S  EE+ K Y++LF+ N K+  GSFYLQSKV RAKE L+   + K Q  ED
Sbjct:    62 ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDE--ELKIQAQED 116

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z4M1 PAM16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 47/108 (43%), Positives = 72/108 (66%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQ---ETVQNIRRASKMM--AEPEA 57
             A+ +AQ+I++G+ ++ RA ++A RQ LA +  +  A+   E  Q+   AS+++  +  EA
Sbjct:     2 AKYLAQIILVGAQVVGRAFMRALRQELAASRAAADARGRSERPQSAA-ASRIIGISLQEA 60

Query:    58 RQILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLE 103
             +QIL V+  +  EEI K YD+LF+ N K+  GSFYLQSKV RAKE L+
Sbjct:    61 QQILNVSNLNP-EEIQKNYDHLFKVNDKSVGGSFYLQSKVVRAKERLD 107

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

RGD|1598163 Pam16 "presequence translocase-associated motor 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 47/118 (39%), Positives = 71/118 (60%)

Query:     3 ARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETV-QNIRRASKM--MAEPEARQ 59
             A+ +AQ+IVMG  ++ RA  +A RQ  A +  +  A+         AS +  ++  EA+Q
Sbjct:     2 AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query:    60 ILGVTEQSSWEEILKKYDNLFEQNAKN--GSFYLQSKVHRAKECLETVYQKKHQGTED 115
             IL +++ S  EE+ K Y++LF+ N K+  GSFYLQSKV RAKE L+   + + Q  ED
Sbjct:    62 ILNISKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDE--ELRIQAQED 116

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0071897 "DNA biosynthetic process" evidence=ISO

GO:2001234 "negative regulation of apoptotic signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54SV6	TIM16_DICDI	No assigned EC number	0.3703	0.8706	0.8938	yes	no
Q6BXP3	TIM16_DEBHA	No assigned EC number	0.3414	0.9396	0.8515	yes	no
Q9C1W5	TIM16_SCHPO	No assigned EC number	0.3879	0.9224	0.8359	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XV000340 hypothetical protein (114 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
pfam03656	127	pfam03656, Pam16, Pam16	3e-14

>gnl|CDD|217661 pfam03656, Pam16, Pam16

 Score = 63.8 bits (155), Expect = 3e-14
 Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 11/111 (9%)

Query: 1   MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAE------ 54
           MA R   Q+I+ G+ ++ +A  +AYRQ  A      VA     N  R     +       
Sbjct: 1   MAHRAAIQVIITGTQVVGKAFARAYRQEAAAQR---VAAGAGTNASRRGTAKSNYGGISL 57

Query: 55  PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLE 103
            E+ QIL V E  + EE+ K+Y++LFE N  +K GSFYLQSKV+RAKE L+
Sbjct: 58  DESCQILNVEEDLNMEEVNKRYEHLFEVNDKSKGGSFYLQSKVYRAKERLD 108

The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	100.0
KOG3442	132	consensus Uncharacterized conserved protein [Funct	100.0
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	99.97
PTZ00100	116	DnaJ chaperone protein; Provisional	99.89
PHA03102	153	Small T antigen; Reviewed	98.72
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	98.37
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	98.27
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.26
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	98.22
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.94
PHA02624	647	large T antigen; Provisional	97.78
PRK14299	291	chaperone protein DnaJ; Provisional	97.71
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	97.51
PRK14296	372	chaperone protein DnaJ; Provisional	97.48
PRK10767	371	chaperone protein DnaJ; Provisional	97.45
PRK14278	378	chaperone protein DnaJ; Provisional	97.44
PRK14281	397	chaperone protein DnaJ; Provisional	97.4
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.38
PRK14280	376	chaperone protein DnaJ; Provisional	97.38
PRK14288	369	chaperone protein DnaJ; Provisional	97.38
PRK14300	372	chaperone protein DnaJ; Provisional	97.35
PRK14287	371	chaperone protein DnaJ; Provisional	97.34
PRK10266	306	curved DNA-binding protein CbpA; Provisional	97.32
PRK14298	377	chaperone protein DnaJ; Provisional	97.28
PRK14294	366	chaperone protein DnaJ; Provisional	97.25
PRK14292	371	chaperone protein DnaJ; Provisional	97.25
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	97.24
PRK14301	373	chaperone protein DnaJ; Provisional	97.23
PRK14286	372	chaperone protein DnaJ; Provisional	97.22
PRK14276	380	chaperone protein DnaJ; Provisional	97.18
PRK14285	365	chaperone protein DnaJ; Provisional	97.16
PRK14279	392	chaperone protein DnaJ; Provisional	97.15
PRK14282	369	chaperone protein DnaJ; Provisional	97.1
PRK14297	380	chaperone protein DnaJ; Provisional	97.09
PRK14295	389	chaperone protein DnaJ; Provisional	97.02
PRK14283	378	chaperone protein DnaJ; Provisional	96.98
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	96.93
PRK14277	386	chaperone protein DnaJ; Provisional	96.86
PRK14289	386	chaperone protein DnaJ; Provisional	96.8
PRK14291	382	chaperone protein DnaJ; Provisional	96.79
PRK14290	365	chaperone protein DnaJ; Provisional	96.71
PRK14293	374	chaperone protein DnaJ; Provisional	96.65
PRK14284	391	chaperone protein DnaJ; Provisional	96.49
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	96.36
PRK05014	171	hscB co-chaperone HscB; Provisional	96.27
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.19
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	96.18
PF13446	62	RPT: A repeated domain in UCH-protein	96.02
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	96.0
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	95.91
PRK01356	166	hscB co-chaperone HscB; Provisional	95.89
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	95.15
PRK00294	173	hscB co-chaperone HscB; Provisional	94.63
PRK03578	176	hscB co-chaperone HscB; Provisional	94.33
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	94.12
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	93.82
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	90.62
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	89.5
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	88.25
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	88.18
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	87.36
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	87.0
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	86.78
PRK01773	173	hscB co-chaperone HscB; Provisional	85.72
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	81.72
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	81.33

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=100.00  E-value=3.1e-38  Score=229.19  Aligned_cols=111  Identities=52%  Similarity=0.654  Sum_probs=49.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCch-HHH--HhhhhhhcCCCCHHHHHHhhCCCCCCCHHHHHHHHH
Q 033572            1 MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVA-QET--VQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYD   77 (116)
Q Consensus         1 M~~r~i~~l~v~~~~~~gRA~~~Ayrq~~~~~~~~g~~-~~~--~~~~~~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~   77 (116)
                      |++|+|+||+|+|++++||||++||||++.++.....+ ...  .....+...+||++||++||||++..++|+|.++|+
T Consensus         1 Ma~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~   80 (127)
T PF03656_consen    1 MAKRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK   80 (127)
T ss_dssp             --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence            99999999999999999999999999998543221111 110  011122345899999999999999999999999999


Q ss_pred             HHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 033572           78 NLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKHQ  111 (116)
Q Consensus        78 ~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~~  111 (116)
                      |||++|  ++||||||||||++|||||++|++....
T Consensus        81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~~~~~  116 (127)
T PF03656_consen   81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELKEEEK  116 (127)
T ss_dssp             HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999  6899999999999999999999976643

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=207.95  Aligned_cols=106  Identities=46%  Similarity=0.650  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhh-----hhhhcCCCCHHHHHHhhCCCCCCCHHHHHHHH
Q 033572            2 AARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN-----IRRASKMMAEPEARQILGVTEQSSWEEILKKY   76 (116)
Q Consensus         2 ~~r~i~~l~v~~~~~~gRA~~~Ayrq~~~~~~~~g~~~~~~~~-----~~~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~   76 (116)
                      ++|.+++|||+|++++||||++||||+++++...+...+..++     ..+...+||++||++||||++..++++|.++|
T Consensus         1 ~~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y   80 (132)
T KOG3442|consen    1 MARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY   80 (132)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence            4799999999999999999999999999876443221111111     11224569999999999999999999999999


Q ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHh
Q 033572           77 DNLFEQN--AKNGSFYLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        77 ~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~  107 (116)
                      .|||.+|  .+||||||||||+||||||+.|++
T Consensus        81 ehLFevNdkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             HHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence            9999999  679999999999999999999998

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.4e-31  Score=188.35  Aligned_cols=102  Identities=28%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccCchHHHHhhhhhhcCCCCHHHHHHhhCCCCCCCHHHHHHHH
Q 033572            1 MAARIIAQLIVMGSGIMARAVVQ----AYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQSSWEEILKKY   76 (116)
Q Consensus         1 M~~r~i~~l~v~~~~~~gRA~~~----Ayrq~~~~~~~~g~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~   76 (116)
                      |+.++++|++|+++++.||..++    +++-... ....+..+.|+  .|+|.++||+.||.+||||.+++++++|+++|
T Consensus         1 ~~~~i~~G~gvaa~a~ag~~gl~~~~~~~qa~~~-~~~~~~~~~~y--~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaH   77 (112)
T KOG0723|consen    1 MVSPIIAGLGVAALAFAGRYGLWMKTLAKQAFKT-LPKGPFFGAFY--KGGFEPKMSRREAALILGVTPSLDKDKIKEAH   77 (112)
T ss_pred             CchhHHHhHHHHHHHHhchhhhhchhHHHHHHHH-cCCCcchhhhh--hcccccccchHHHHHHhCCCccccHHHHHHHH
Confidence            78999999999999999999999    4433322 22233345566  89999999999999999999999999999999


Q ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHHHHH
Q 033572           77 DNLFEQN--AKNGSFYLQSKVHRAKECLETV  105 (116)
Q Consensus        77 ~~L~~~N--dkgGS~YL~sKin~Ak~~L~~e  105 (116)
                      ||+|..|  |+|||||||+|||||||+|+..
T Consensus        78 rriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   78 RRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999  9999999999999999999864

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=145.80  Aligned_cols=102  Identities=26%  Similarity=0.314  Sum_probs=86.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Cc---hHHHH--hhhhhhcCCCCHHHHHHhhCCCCCCCH
Q 033572            1 MAARIIAQLIVMGSGIMARAVVQAYRQALANASKS------GV---AQETV--QNIRRASKMMAEPEARQILGVTEQSSW   69 (116)
Q Consensus         1 M~~r~i~~l~v~~~~~~gRA~~~Ayrq~~~~~~~~------g~---~~~~~--~~~~~~~~~Ms~~EA~~ILgv~~~~~~   69 (116)
                      |.+|+++ +.+.++.+++|.++++|++.......+      +.   ...++  .+.++|++.||.+||++||||+++++.
T Consensus         1 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~   79 (116)
T PTZ00100          1 MMWPIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASK   79 (116)
T ss_pred             CcchHHH-HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCH
Confidence            8899999 999999999999999999876543211      10   11221  225789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHH
Q 033572           70 EEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLE  103 (116)
Q Consensus        70 ~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~  103 (116)
                      ++|+++||+|+..|  |+|||+|+++|||+|+|+|.
T Consensus        80 ~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         80 ERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999  99999999999999999996

>PHA03102 Small T antigen; Reviewed

Probab=98.72  E-value=5.5e-08  Score=72.79  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             HHHHHHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572           54 EPEARQILGVTEQS--SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        54 ~~EA~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~  109 (116)
                      .+|++.||||++++  |.++|+++|+++...+  |+||++..-.+||+|.++|.......
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~   63 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSL   63 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhc
Confidence            58999999999999  9999999999999999  99999999999999999998877655

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=98.37  E-value=2.3e-06  Score=53.53  Aligned_cols=53  Identities=30%  Similarity=0.343  Sum_probs=46.4

Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cC-CCCH----HHHHHHHHHHHHHHHHHhh
Q 033572           56 EARQILGVTEQSSWEEILKKYDNLFEQN--AK-NGSF----YLQSKVHRAKECLETVYQK  108 (116)
Q Consensus        56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dk-gGS~----YL~sKin~Ak~~L~~el~~  108 (116)
                      +...||||+++++.++|+++|+++++..  |+ +++.    -...+|++|+++|......
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R   60 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR   60 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence            3578999999999999999999999999  77 6777    7889999999999876543

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=98.27  E-value=3.2e-06  Score=51.90  Aligned_cols=49  Identities=31%  Similarity=0.340  Sum_probs=42.5

Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-----CHHHHHHHHHHHHHHHH
Q 033572           56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-----SFYLQSKVHRAKECLET  104 (116)
Q Consensus        56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-----S~YL~sKin~Ak~~L~~  104 (116)
                      +...||||+++++.++|+++|++|....  |+++     +.-.-.+|++|+++|..
T Consensus         2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~   57 (60)
T smart00271        2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD   57 (60)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999999999  8887     45667789999998864

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.26  E-value=4e-06  Score=67.09  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cC----CCCH-H------HHHHHHHHHHHHHHHH
Q 033572           51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AK----NGSF-Y------LQSKVHRAKECLETVY  106 (116)
Q Consensus        51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dk----gGS~-Y------L~sKin~Ak~~L~~el  106 (116)
                      .|+.++|+.||||+++++.++|+++||+|+..+  |+    |.++ +      --.+|++|+|+|.++-
T Consensus       196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r  264 (267)
T PRK09430        196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK  264 (267)
T ss_pred             CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            699999999999999999999999999999999  76    3443 2      3456999999998753

>cd06257 DnaJ DnaJ domain or J-domain

Probab=98.22  E-value=5.2e-06  Score=50.02  Aligned_cols=47  Identities=34%  Similarity=0.293  Sum_probs=40.9

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS----FYLQSKVHRAKECLE  103 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS----~YL~sKin~Ak~~L~  103 (116)
                      ..+||||+++++.++|+++|++|++..  |++++    .-.-.+|++|+++|.
T Consensus         2 ~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~   54 (55)
T cd06257           2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS   54 (55)
T ss_pred             hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999  88774    556678999999874

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.94  E-value=2.5e-05  Score=66.24  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHh
Q 033572           50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~  107 (116)
                      ..|.......||||+++++.++|+++||+|-...  |+++++---.+|++|+++|....+
T Consensus        23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~k   82 (421)
T PTZ00037         23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEK   82 (421)
T ss_pred             ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHH
Confidence            4566778999999999999999999999998888  999887777789999999965543

>PHA02624 large T antigen; Provisional

Probab=97.78  E-value=7.6e-05  Score=66.52  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             HHHHHHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 033572           54 EPEARQILGVTEQS--SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKH  110 (116)
Q Consensus        54 ~~EA~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~  110 (116)
                      .+|+.+||||++++  +.++|+++||++-+..  |+||++-.-.+||+|+++|....++..
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r   70 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSAR   70 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhh
Confidence            46899999999999  9999999999998888  999999999999999999988776543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=97.71  E-value=7.1e-05  Score=60.21  Aligned_cols=55  Identities=27%  Similarity=0.266  Sum_probs=44.7

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHH---HHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQ---SKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~---sKin~Ak~~L~~el  106 (116)
                      |+...-..||||+++++.++|+++||+|....  |++.++.-.   ..||+|+++|....
T Consensus         1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~   60 (291)
T PRK14299          1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE   60 (291)
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHH
Confidence            44456789999999999999999999999888  887655443   34999999996543

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0002  Score=56.81  Aligned_cols=50  Identities=26%  Similarity=0.276  Sum_probs=45.0

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cC----CCCHHHHHHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AK----NGSFYLQSKVHRAKECLETVY  106 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dk----gGS~YL~sKin~Ak~~L~~el  106 (116)
                      =.+||||+++++..||+++||+|-..-  ||    +|+.+-...|+-|...|..+.
T Consensus       101 PyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~  156 (230)
T KOG0721|consen  101 PYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKK  156 (230)
T ss_pred             cHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchh
Confidence            368999999999999999999998776  88    899999999999999996554

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.48  E-value=0.00018  Score=59.85  Aligned_cols=57  Identities=25%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHH---HHHHHHHHHHHHHHhh
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQ---SKVHRAKECLETVYQK  108 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~---sKin~Ak~~L~~el~~  108 (116)
                      |+...-..||||+++++.++|+++||+|-...  |++-++--.   .+|++|+++|..+-+.
T Consensus         1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR   62 (372)
T PRK14296          1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKR   62 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHh
Confidence            44445689999999999999999999998777  776444322   3599999999765443

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.45  E-value=0.00027  Score=58.47  Aligned_cols=55  Identities=27%  Similarity=0.334  Sum_probs=44.2

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHHHH---HHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFYLQ---SKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~YL~---sKin~Ak~~L~~el  106 (116)
                      |+......||||+++++.++|+++|++|-...  |+++ ++--.   ..|++|+++|....
T Consensus         1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~   61 (371)
T PRK10767          1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ   61 (371)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchh
Confidence            44567889999999999999999999998888  8764 44322   36999999996544

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.44  E-value=0.00027  Score=58.93  Aligned_cols=50  Identities=26%  Similarity=0.208  Sum_probs=42.5

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHHH---HHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQS---KVHRAKECLETVY  106 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~s---Kin~Ak~~L~~el  106 (116)
                      -..||||+++++.++|+++||+|-..-  |+++++.-..   +|++|+|+|....
T Consensus         5 ~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~   59 (378)
T PRK14278          5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPE   59 (378)
T ss_pred             cceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhh
Confidence            468999999999999999999998887  8888876544   4999999996543

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.40  E-value=0.0004  Score=58.25  Aligned_cols=52  Identities=27%  Similarity=0.270  Sum_probs=43.1

Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H---HHHHHHHHHHHHHHHHHh
Q 033572           56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F---YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~---YL~sKin~Ak~~L~~el~  107 (116)
                      .-..||||+++++.++|+++|++|-...  |++.+ +   -.-.+||+|+|+|....+
T Consensus         4 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~   61 (397)
T PRK14281          4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK   61 (397)
T ss_pred             ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhh
Confidence            5679999999999999999999999888  87653 2   233689999999977553

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00033  Score=59.00  Aligned_cols=51  Identities=33%  Similarity=0.410  Sum_probs=43.1

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHHH---HHHHHHHHHHHHh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQSK---VHRAKECLETVYQ  107 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~sK---in~Ak~~L~~el~  107 (116)
                      =.+||||+.+++.+||+++||+|-..-  |++ |++==..|   |++|+|+|...-+
T Consensus         6 yYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eK   62 (371)
T COG0484           6 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEK   62 (371)
T ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence            378999999999999999999999888  765 57777766   9999999965443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.38  E-value=0.00034  Score=58.24  Aligned_cols=56  Identities=27%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHHHHHHHHHHh
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG---SFYLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG---S~YL~sKin~Ak~~L~~el~  107 (116)
                      |.......||||+++++.++|+++|++|-...  |+.-   ..---.+|++|+++|....+
T Consensus         1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k   61 (376)
T PRK14280          1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQK   61 (376)
T ss_pred             CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhH
Confidence            34457789999999999999999999998888  7643   23444679999999976554

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.38  E-value=0.00043  Score=57.56  Aligned_cols=51  Identities=24%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~  107 (116)
                      -..||||+++++.++|+++||+|-...  |+.. ++-   --..|++|+|+|..+-+
T Consensus         5 yY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~k   61 (369)
T PRK14288          5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKK   61 (369)
T ss_pred             hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHH
Confidence            368999999999999999999998887  7753 443   23459999999976543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.35  E-value=0.00041  Score=57.66  Aligned_cols=52  Identities=23%  Similarity=0.255  Sum_probs=42.6

Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHHHh
Q 033572           56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~el~  107 (116)
                      .-.+||||+++++.++|+++|++|-+..  |+..++-   .-..||+|+++|..+.+
T Consensus         4 ~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~   60 (372)
T PRK14300          4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK   60 (372)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhH
Confidence            4579999999999999999999998888  7654332   33689999999987553

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.34  E-value=0.00036  Score=58.05  Aligned_cols=55  Identities=24%  Similarity=0.274  Sum_probs=43.5

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el  106 (116)
                      |.......||||+++++.++|+++||+|-...  |++.++   =--.+||+|+|+|....
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~   60 (371)
T PRK14287          1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQ   60 (371)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHh
Confidence            33456789999999999999999999998888  876443   12347999999995543

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=97.32  E-value=0.00056  Score=55.35  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG---SFYLQSKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG---S~YL~sKin~Ak~~L~~el  106 (116)
                      |+...-+.||||+++++.++|+++|++|-...  |++.   +.=.-..|++|+++|....
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~   60 (306)
T PRK10266          1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ   60 (306)
T ss_pred             CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence            34456789999999999999999999998888  8764   3344458999999997644

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.28  E-value=0.0005  Score=57.33  Aligned_cols=53  Identities=25%  Similarity=0.270  Sum_probs=43.0

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHHHHHh
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL---QSKVHRAKECLETVYQ  107 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL---~sKin~Ak~~L~~el~  107 (116)
                      ..-..||||+++++.++|+++||+|-+..  |++.++--   -..||+|+++|....+
T Consensus         5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~k   62 (377)
T PRK14298          5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEK   62 (377)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHh
Confidence            46789999999999999999999998888  77644322   2469999999976554

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.25  E-value=0.00059  Score=56.55  Aligned_cols=56  Identities=32%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHh
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~  107 (116)
                      |+...-..||||+++++.++|+++||+|-..-  |++. ++-   .-..|++|+++|....+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~   62 (366)
T PRK14294          1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKK   62 (366)
T ss_pred             CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHH
Confidence            44567789999999999999999999998887  7764 332   34569999999976543

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.25  E-value=0.00074  Score=55.91  Aligned_cols=51  Identities=22%  Similarity=0.254  Sum_probs=42.3

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHH---HHHHHHHHHHHHHHh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQ---SKVHRAKECLETVYQ  107 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~---sKin~Ak~~L~~el~  107 (116)
                      -..||||+++++.++|+++|++|....  |++.++--.   ..||+|+++|....+
T Consensus         4 ~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~   59 (371)
T PRK14292          4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEK   59 (371)
T ss_pred             hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhh
Confidence            468999999999999999999999988  887665422   459999999976543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=97.24  E-value=0.00069  Score=55.61  Aligned_cols=51  Identities=29%  Similarity=0.344  Sum_probs=41.8

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHHHhh
Q 033572           58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETVYQK  108 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~el~~  108 (116)
                      .+||||+++++.++|+++|++|....  |++.++-   .-.+|++|+++|....+.
T Consensus         3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R   58 (354)
T TIGR02349         3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR   58 (354)
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHH
Confidence            57999999999999999999999988  8875543   334699999999776543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.23  E-value=0.00054  Score=57.01  Aligned_cols=57  Identities=26%  Similarity=0.295  Sum_probs=45.0

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHhh
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQK  108 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~~  108 (116)
                      |+....+.||||+++++.++|+++||+|-..-  |+.. ++.   --.+|++|+++|....+.
T Consensus         1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr   63 (373)
T PRK14301          1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR   63 (373)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence            34456789999999999999999999998887  8753 443   224799999999876543

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.22  E-value=0.0006  Score=56.75  Aligned_cols=55  Identities=29%  Similarity=0.242  Sum_probs=44.0

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el  106 (116)
                      |+...-..||||+++++.++|+++||+|-...  |+.. ++   =.-..|++|+++|...-
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~   61 (372)
T PRK14286          1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK   61 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHH
Confidence            44456789999999999999999999998888  7753 43   23457999999996543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.18  E-value=0.00059  Score=56.87  Aligned_cols=54  Identities=28%  Similarity=0.256  Sum_probs=42.6

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHHh
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el~  107 (116)
                      ...-..||||+++++.++|+++|++|-...  |+..++   =--..|++|+++|...-+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k   61 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQK   61 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhh
Confidence            345689999999999999999999998887  765432   233579999999966443

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.16  E-value=0.00054  Score=56.89  Aligned_cols=52  Identities=25%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el  106 (116)
                      .....||||+++++.++|+++||+|...-  |++. ++   ..-..|++|+++|..+-
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~   60 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN   60 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence            35678999999999999999999998887  8864 33   33457999999997643

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.15  E-value=0.00075  Score=56.56  Aligned_cols=52  Identities=27%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el  106 (116)
                      ..-..||||+++++.++|+++||+|....  |++. ++   =.-.+|++|+++|..+-
T Consensus         9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~   66 (392)
T PRK14279          9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPA   66 (392)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchh
Confidence            56789999999999999999999998887  8754 43   33347999999996543

>PRK14282 chaperone protein DnaJ; Provisional

Probab=97.10  E-value=0.0009  Score=55.50  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-C-H---HHHHHHHHHHHHHHHHHh
Q 033572           53 AEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-S-F---YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S-~---YL~sKin~Ak~~L~~el~  107 (116)
                      ....-.+||||+++++.++|+++|++|-..-  |+.. . +   -.-..||+|+++|...-+
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~k   63 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK   63 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhh
Confidence            3345688999999999999999999999887  7642 1 2   233569999999966543

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.09  E-value=0.00086  Score=55.82  Aligned_cols=54  Identities=22%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHhh
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQK  108 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~~  108 (116)
                      ..-..||||+++++.++|+++||+|-..-  |+.. ++-   .-..||+|+++|....+.
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r   63 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK   63 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhh
Confidence            46689999999999999999999998887  7753 332   235699999999776543

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.02  E-value=0.0014  Score=54.95  Aligned_cols=51  Identities=22%  Similarity=0.259  Sum_probs=42.1

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETV  105 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~e  105 (116)
                      ..-..||||+++++.++|+++||+|-...  |++. .+.   .-..||+|+++|...
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   65 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE   65 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence            57799999999999999999999998888  7753 332   345799999999654

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.98  E-value=0.0015  Score=54.44  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=43.2

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHHhh
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVYQK  108 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el~~  108 (116)
                      ..-..||||+++++.++|+++|++|-...  |++.+   .=-=.+|++|+++|....+.
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR   63 (378)
T PRK14283          5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR   63 (378)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHH
Confidence            45679999999999999999999998887  87533   23345799999999776543

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0022  Score=53.48  Aligned_cols=55  Identities=27%  Similarity=0.286  Sum_probs=43.9

Q ss_pred             CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHH---HHHHHHHHHHHHHh
Q 033572           53 AEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQS---KVHRAKECLETVYQ  107 (116)
Q Consensus        53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~s---Kin~Ak~~L~~el~  107 (116)
                      +.+.=.+||||+.+++.++|+++||+|-..-  ||+ ++|==+.   |||.|+++|..+-+
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpek   74 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEK   74 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence            3344578999999999999999999998887  765 6665554   69999999965443

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.86  E-value=0.0026  Score=53.11  Aligned_cols=52  Identities=27%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVY  106 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el  106 (116)
                      ..-..||||+++++.++|+++||+|-...  |+.. ++-   --..||+|+|+|....
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~   62 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ   62 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHH
Confidence            45689999999999999999999998887  7653 443   2347999999996544

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.80  E-value=0.0028  Score=52.79  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=43.2

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHH---HHHHHHHHHHHHHHHHh
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFY---LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~Y---L~sKin~Ak~~L~~el~  107 (116)
                      ......+|||+++++.++|+++|++|-..-  |+. +++.   .-.+|++|+++|..+.+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~   63 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDK   63 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence            456789999999999999999999998887  664 4543   23479999999976543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.79  E-value=0.003  Score=52.67  Aligned_cols=51  Identities=25%  Similarity=0.251  Sum_probs=41.2

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHHh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el~  107 (116)
                      -..||||+++++.++|+++||+|-..-  |++.++   =.-..|++|+++|....+
T Consensus         5 ~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~k   60 (382)
T PRK14291          5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEK   60 (382)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence            468999999999999999999998887  876543   233579999999976543

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.71  E-value=0.0037  Score=51.83  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H----HHHHHHHHHHHHHHHHHhh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F----YLQSKVHRAKECLETVYQK  108 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~----YL~sKin~Ak~~L~~el~~  108 (116)
                      -..||||+++++.++|+++||+|-...  |+... +    =.-..|++|+++|..+.+.
T Consensus         5 ~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r   63 (365)
T PRK14290          5 YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR   63 (365)
T ss_pred             hhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence            468999999999999999999998888  77532 2    1224699999999776544

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.65  E-value=0.0042  Score=51.63  Aligned_cols=53  Identities=23%  Similarity=0.282  Sum_probs=42.0

Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHHhh
Q 033572           56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVYQK  108 (116)
Q Consensus        56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el~~  108 (116)
                      .-..||||+++++.++|+++|++|-...  |+..+   .=.-..|++|+++|..+.+.
T Consensus         4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R   61 (374)
T PRK14293          4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETR   61 (374)
T ss_pred             ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHH
Confidence            3478999999999999999999998886  66533   22335799999999876643

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.49  E-value=0.0063  Score=50.91  Aligned_cols=48  Identities=35%  Similarity=0.322  Sum_probs=39.3

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETV  105 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~e  105 (116)
                      ..||||+++++.++|+++||+|-..-  |+.. ++.   .-..|++|+++|...
T Consensus         4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   57 (391)
T PRK14284          4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA   57 (391)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence            68999999999999999999998886  7653 333   335699999999654

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=96.36  E-value=0.0076  Score=55.34  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=42.1

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL---QSKVHRAKECLETVY  106 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL---~sKin~Ak~~L~~el  106 (116)
                      -+.||||+++++.++|+++||+|.+..  |+++++.-   -.+|++|+++|....
T Consensus         4 YYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~   58 (871)
T TIGR03835         4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPK   58 (871)
T ss_pred             hhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHH
Confidence            478999999999999999999999999  88876543   346999999996543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=96.27  E-value=0.015  Score=43.75  Aligned_cols=49  Identities=18%  Similarity=0.225  Sum_probs=39.0

Q ss_pred             HHhhCCCCC--CCHHHHHHHHHHHHHHh--cC--CCCHH-------HHHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AK--NGSFY-------LQSKVHRAKECLETVY  106 (116)
Q Consensus        58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dk--gGS~Y-------L~sKin~Ak~~L~~el  106 (116)
                      +.||||++.  ++.++|+++|++|....  |+  +.++.       ..+.||+|+++|..-+
T Consensus         4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~   65 (171)
T PRK05014          4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPL   65 (171)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChh
Confidence            579999996  78899999999999999  76  34443       3367999999996543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.043  Score=52.70  Aligned_cols=78  Identities=26%  Similarity=0.329  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhcccCchHHHHhhhhhhcCCCCHHHHHHhhCCCCC----CCHHHHHHHHHHHHHHh--cCC--CCH
Q 033572           18 ARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQ----SSWEEILKKYDNLFEQN--AKN--GSF   89 (116)
Q Consensus        18 gRA~~~Ayrq~~~~~~~~g~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~----~~~~~I~~~~~~L~~~N--dkg--GS~   89 (116)
                      .|..+.+|+++...  +              -..||.+||++||+++-+    .++++|+++|++|-..-  ||+  |- 
T Consensus      1260 L~~~L~~W~~Elek--K--------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGR- 1322 (2235)
T KOG1789|consen 1260 LRCCLATWYNELEK--K--------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGR- 1322 (2235)
T ss_pred             HHHHHHHHHHHHhc--C--------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHH-
Confidence            45666677766532  1              246999999999999875    45589999999997766  654  22 


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCC
Q 033572           90 YLQSKVHRAKECLETVYQKKHQG  112 (116)
Q Consensus        90 YL~sKin~Ak~~L~~el~~~~~~  112 (116)
                      -.-.|||.|+|+|..+..+.-.|
T Consensus      1323 emFe~VnKAYE~L~~~ta~~~~G 1345 (2235)
T KOG1789|consen 1323 EMFERVNKAYELLSSETANNSGG 1345 (2235)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCC
Confidence            23358999999998776665443

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.011  Score=48.36  Aligned_cols=56  Identities=21%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-HHHHH---HHHHHHHHHHHHH
Q 033572           51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-FYLQS---KVHRAKECLETVY  106 (116)
Q Consensus        51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~YL~s---Kin~Ak~~L~~el  106 (116)
                      ...+..=..+||++++++.++|+++||+|++.-  |+.|. |-..-   -||+|..+|..-.
T Consensus        27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~   88 (279)
T KOG0716|consen   27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPT   88 (279)
T ss_pred             ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChh
Confidence            344666789999999999999999999999966  66554 54444   4999999996543

>PF13446 RPT: A repeated domain in UCH-protein

Probab=96.02  E-value=0.046  Score=34.29  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572           51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN   83 (116)
Q Consensus        51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N   83 (116)
                      .|+.++|+.+||++++.+.+.|...|+....-+
T Consensus         1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~~   33 (62)
T PF13446_consen    1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVNDD   33 (62)
T ss_pred             CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHHcC
Confidence            499999999999999999999999999887743

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.013  Score=47.61  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cC---CCCHHHHHHHHHHHHHHHHHHhhh
Q 033572           49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AK---NGSFYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dk---gGS~YL~sKin~Ak~~L~~el~~~  109 (116)
                      ...|+.+.-.+||||+++++..||+.+|++|-+.-  |.   .+.-=.-.+|.+|+|+|..+.++.
T Consensus        37 s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   37 SRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             cccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence            34566668999999999999999999999999987  43   255555667999999998776654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.027  Score=40.45  Aligned_cols=52  Identities=31%  Similarity=0.314  Sum_probs=42.6

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCH----HHHHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSF----YLQSKVHRAKECLETVY  106 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~----YL~sKin~Ak~~L~~el  106 (116)
                      ..-..||||.++++.++|+++|+++-..-  |++ +.+    -.-..|++|.++|....
T Consensus         6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~   64 (237)
T COG2214           6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE   64 (237)
T ss_pred             hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHH
Confidence            44578999999999999999999999988  764 455    55667999999996543

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=95.89  E-value=0.027  Score=42.36  Aligned_cols=49  Identities=18%  Similarity=0.272  Sum_probs=39.9

Q ss_pred             HHhhCCCCC--CCHHHHHHHHHHHHHHh--cCCCCH-------HHHHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AKNGSF-------YLQSKVHRAKECLETVY  106 (116)
Q Consensus        58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkgGS~-------YL~sKin~Ak~~L~~el  106 (116)
                      +.||||++.  ++.++|+++|++|....  |+.-|.       -..+.||+|+++|..-+
T Consensus         5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~   64 (166)
T PRK01356          5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL   64 (166)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            579999997  78999999999999988  775443       23579999999997554

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.039  Score=46.17  Aligned_cols=47  Identities=34%  Similarity=0.334  Sum_probs=37.9

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-YLQSKVHRAKECLET  104 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-YL~sKin~Ak~~L~~  104 (116)
                      ..||||.++++.+||+++||+|-...  ||+-.. -==..|.+|+|+|..
T Consensus         7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd   56 (337)
T KOG0712|consen    7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD   56 (337)
T ss_pred             ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence            46999999999999999999999998  877551 111348889999955

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=94.63  E-value=0.1  Score=39.54  Aligned_cols=50  Identities=8%  Similarity=0.145  Sum_probs=39.5

Q ss_pred             HHhhCCCCC--CCHHHHHHHHHHHHHHh--cCC--CCHH-------HHHHHHHHHHHHHHHHh
Q 033572           58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AKN--GSFY-------LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkg--GS~Y-------L~sKin~Ak~~L~~el~  107 (116)
                      +.+||+++.  ++.++|+++|++|-...  |+-  .|+.       ..+.||+|+++|...+.
T Consensus         7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~   69 (173)
T PRK00294          7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPR   69 (173)
T ss_pred             hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence            568999997  78899999999999999  653  3332       35789999999976554

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=94.33  E-value=0.13  Score=39.12  Aligned_cols=53  Identities=9%  Similarity=0.109  Sum_probs=40.9

Q ss_pred             HHHHHhhCCCCC--CCHHHHHHHHHHHHHHh--cCC--CCHH-------HHHHHHHHHHHHHHHHh
Q 033572           55 PEARQILGVTEQ--SSWEEILKKYDNLFEQN--AKN--GSFY-------LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        55 ~EA~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkg--GS~Y-------L~sKin~Ak~~L~~el~  107 (116)
                      ..-+.||||++.  ++..+|+++|++|-...  |+-  .|+-       ..+.||.|+++|..-+.
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~   71 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLK   71 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence            345789999996  68899999999999998  753  3332       23789999999966543

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=94.12  E-value=0.11  Score=49.02  Aligned_cols=53  Identities=25%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHHHHH
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL---QSKVHRAKECLETVY  106 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL---~sKin~Ak~~L~~el  106 (116)
                      ...-..||||+++++..+|+++|++|-..-  |+...+--   =.+|++|+++|...-
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~  629 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDID  629 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence            356799999999999999999999997777  77644411   146999999995543

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=0.17  Score=44.55  Aligned_cols=55  Identities=25%  Similarity=0.226  Sum_probs=45.0

Q ss_pred             CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH-------HHHHHHHHHHHHHHHh
Q 033572           53 AEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL-------QSKVHRAKECLETVYQ  107 (116)
Q Consensus        53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL-------~sKin~Ak~~L~~el~  107 (116)
                      ...|=..+|||+++++.|+|+++||++-.+=  ||--+|-.       =.+|.+|+|+|...-+
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~k   70 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQK   70 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHH
Confidence            3447789999999999999999999998887  88777654       3579999999965443

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.62  E-value=0.28  Score=42.91  Aligned_cols=58  Identities=19%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             hhhcCCCCHH----HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHH
Q 033572           46 RRASKMMAEP----EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLE  103 (116)
Q Consensus        46 ~~~~~~Ms~~----EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~  103 (116)
                      ..|...|++.    .|..+|||.++++.++|+++||++-.+-  ||+-+|=   -=.|+..|.|+|.
T Consensus       222 t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig  288 (490)
T KOG0720|consen  222 TSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIG  288 (490)
T ss_pred             hhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhc
Confidence            3445555554    4999999999999999999999997777  8886442   2346777777773

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=89.50  E-value=1  Score=37.05  Aligned_cols=49  Identities=31%  Similarity=0.346  Sum_probs=38.3

Q ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHHH---HHHHHHHHHH
Q 033572           56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQSK---VHRAKECLET  104 (116)
Q Consensus        56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~sK---in~Ak~~L~~  104 (116)
                      |=..||||+++++..+|+++|+..-..-  ||+ |.|=-+.|   +-+|+++|..
T Consensus         6 dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D   60 (296)
T KOG0691|consen    6 DYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSD   60 (296)
T ss_pred             hHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC
Confidence            4468999999999999999999887555  654 88875554   6678888843

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.25  E-value=2.6  Score=34.54  Aligned_cols=55  Identities=22%  Similarity=0.253  Sum_probs=40.7

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHH-HHHHHHhh
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKE-CLETVYQK  108 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~-~L~~el~~  108 (116)
                      ..|-..||||+++++.++|+++|..|-+.-  |.|..   .---..|.+|.. +|...+.+
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k  106 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK  106 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999998  55522   222235888876 44444433

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.18  E-value=1.2  Score=39.08  Aligned_cols=47  Identities=30%  Similarity=0.311  Sum_probs=37.1

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H----HHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F----YLQSKVHRAKECLE  103 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~----YL~sKin~Ak~~L~  103 (116)
                      =..||||+.+++.++|+++||+|-..=  |+++- -    =.-+-|+.|+++|.
T Consensus        10 ~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLS   63 (508)
T KOG0717|consen   10 YYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLS   63 (508)
T ss_pred             HHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence            467999999999999999999998887  77432 1    12245889999993

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=87.36  E-value=1.2  Score=39.41  Aligned_cols=52  Identities=25%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHH-HHh-cCCC-------CHHH--HHHHHHHHHHHHHHHhhh
Q 033572           58 RQILGVTEQSSWEEILKKYDNLF-EQN-AKNG-------SFYL--QSKVHRAKECLETVYQKK  109 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~-~~N-dkgG-------S~YL--~sKin~Ak~~L~~el~~~  109 (116)
                      ..|||++.+++..+|+++||+|- +-| ||--       |.|=  +--|+.|++.|..+...+
T Consensus       101 yEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re  163 (610)
T COG5407         101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE  163 (610)
T ss_pred             HHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            67999999999999999999984 444 6532       2221  123788888886665443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=87.00  E-value=0.49  Score=40.84  Aligned_cols=55  Identities=27%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHH----HHHHHHHHHHH
Q 033572           51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSK----VHRAKECLETV  105 (116)
Q Consensus        51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sK----in~Ak~~L~~e  105 (116)
                      .--++.=.+||||..++++.+|.++||+|-..=  |+=-..   =-+.|    |-.|||+|..+
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~  453 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP  453 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence            344567789999999999999999999998775  321111   11222    77899999543

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=86.78  E-value=2.6  Score=32.60  Aligned_cols=46  Identities=20%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHhhhcC
Q 033572           64 TEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECL-ETVYQKKHQ  111 (116)
Q Consensus        64 ~~~~~~~~I~~~~~~L~~~NdkgGS~YL~sKin~Ak~~L-~~el~~~~~  111 (116)
                      +++++-|||++++.++....  +|..--..+|..|+|.| .+.+..-++
T Consensus         1 S~~ASfeEIq~Arn~ll~~y--~gd~~~~~~IEaAYD~ILM~rL~~Rq~   47 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY--AGDEKSREAIEAAYDAILMERLRQRQK   47 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            46789999999999998886  68889999999999866 455544433

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=85.72  E-value=2.1  Score=32.47  Aligned_cols=49  Identities=14%  Similarity=0.121  Sum_probs=39.8

Q ss_pred             HHhhCCCCC--CCHHHHHHHHHHHHHHh--cC--CCC-------HHHHHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AK--NGS-------FYLQSKVHRAKECLETVY  106 (116)
Q Consensus        58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dk--gGS-------~YL~sKin~Ak~~L~~el  106 (116)
                      +.+||+++.  .+...+.++|+.|-..-  |+  +.|       --.++.||.|+..|..-+
T Consensus         5 F~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl   66 (173)
T PRK01773          5 FALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPI   66 (173)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChH
Confidence            578999997  89999999999999998  65  233       345789999999996544

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=81.72  E-value=3.6  Score=30.51  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHHHHHHHh--cC--CCC-------HHHHHHHHHHHHHHHHHHh
Q 033572           67 SSWEEILKKYDNLFEQN--AK--NGS-------FYLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        67 ~~~~~I~~~~~~L~~~N--dk--gGS-------~YL~sKin~Ak~~L~~el~  107 (116)
                      .+..+|+++|++|-...  |+  +.|       --..+.||+|+++|...+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~   54 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLM   54 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhh
Confidence            57789999999999988  75  332       2456789999999976553

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=81.33  E-value=3.2  Score=33.28  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKN   86 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg   86 (116)
                      ++.+|.|+|..+.++|+++||+|-.+-  |++
T Consensus        55 pfeVLqIdpev~~edikkryRklSilVHPDKN   86 (250)
T KOG1150|consen   55 PFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN   86 (250)
T ss_pred             hHHHHhcCCCCCHHHHHHHHHhhheeecCCCC
Confidence            567788899999999999999998776  554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
2guz_B	65	Mitochondrial import inner membrane translocase su	1e-17
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65

 Score = 70.3 bits (172), Expect = 1e-17
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 52  MAEPEARQILGVTEQS---SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVY 106
           M   E+ +IL + E     + ++I  +++ LFE N   K GSFYLQSKV+RA E L+   
Sbjct: 1   MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWEL 60

Query: 107 QKKHQ 111
            ++ +
Sbjct: 61  AQREK 65

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 59.3 bits (144), Expect = 2e-13
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 52  MAEPEARQILGVTEQS-SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLE 103
           M   EA QIL +TE + + +++ + +  +   N   K GS +L +K++ AK+ LE
Sbjct: 11  MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLE 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 27/110 (24%)

Query: 22  VQAYRQALANAS--------------KSGVAQETVQNIRRASKMMAEPEARQI--LGVTE 65
               RQAL                  K+ VA +   + +   KM       +I  L +  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-----DFKIFWLNLKN 191

Query: 66  QSSWEEILKKYDNLFEQNAKN------GSFYLQSKVHRAKECLETVYQKK 109
            +S E +L+    L  Q   N       S  ++ ++H  +  L  + + K
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
2guz_B	65	Mitochondrial import inner membrane translocase su	99.93
2guz_A	71	Mitochondrial import inner membrane translocase su	99.6
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	98.89
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	98.55
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	98.33
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	98.31
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	98.29
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	98.25
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	98.23
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	98.15
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	98.14
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	98.09
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	98.08
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	98.08
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	98.05
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	98.05
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	98.02
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	98.0
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	97.98
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	97.97
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	97.96
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	97.96
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	97.89
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	97.55
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.4
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	97.35
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	97.29
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	97.11
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	97.07
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	96.81
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	96.62
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	96.26
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	95.51
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	95.47

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.9e-26  Score=149.31  Aligned_cols=59  Identities=41%  Similarity=0.579  Sum_probs=56.6

Q ss_pred             CCHHHHHHhhCCCCC---CCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 033572           52 MAEPEARQILGVTEQ---SSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKH  110 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~---~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~  110 (116)
                      ||++||++||||+++   ++.++|+++||+||..|  |+|||||||+|||+|||+|+++++..+
T Consensus         1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~~~~   64 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQRE   64 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999   89999999999999999  999999999999999999999997654

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.60  E-value=3.1e-15  Score=96.63  Aligned_cols=62  Identities=29%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             hhhhcCCCCHHHHHHhhCCCC-CCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHH
Q 033572           45 IRRASKMMAEPEARQILGVTE-QSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVY  106 (116)
Q Consensus        45 ~~~~~~~Ms~~EA~~ILgv~~-~~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el  106 (116)
                      .|+|...|+.+||++||||++ +++.++|+++|++|+..+  |+|||++...+||+|+++|....
T Consensus         4 ~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~   68 (71)
T 2guz_A            4 KGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRG   68 (71)
T ss_dssp             CSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            478899999999999999999 799999999999999999  99999999999999999998753

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=98.89  E-value=3.7e-09  Score=69.29  Aligned_cols=58  Identities=14%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             CCHHHHHHhhCCCCC--CCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572           52 MAEPEARQILGVTEQ--SSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~  109 (116)
                      .+..+++.||||+++  ++.++|+++||+|....  |+||++-.-.+||+|+++|...+...
T Consensus         8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~   69 (79)
T 1faf_A            8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNL   69 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            456789999999999  99999999999999999  99999999999999999999877654

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=98.55  E-value=2e-07  Score=62.47  Aligned_cols=61  Identities=13%  Similarity=-0.024  Sum_probs=52.0

Q ss_pred             cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-----HHHHHHHHHHHHHHHHHHhhh
Q 033572           49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-----FYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-----~YL~sKin~Ak~~L~~el~~~  109 (116)
                      -..|+..|++.||||+++++.++|+++|++|....  |+++.     .-.-.+|++|+++|......+
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            35799999999999999999999999999999999  88765     234468999999999877543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=1.6e-06  Score=57.58  Aligned_cols=56  Identities=25%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC---CCHHHHHHHHHHHHHHHHHHhhh
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN---GSFYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg---GS~YL~sKin~Ak~~L~~el~~~  109 (116)
                      ......||||+++++.++|+++|++|....  |++   ++.-.-.+|++|+++|....+..
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            356789999999999999999999999999  887   77777889999999998876543

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.2e-06  Score=58.22  Aligned_cols=55  Identities=22%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQSKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~sKin~Ak~~L~~el  106 (116)
                      |.......||||+++++.++|+++|++|....  |++ ++.-.-.+|++|+++|....
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~   62 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQ   62 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHH
Confidence            35568999999999999999999999999999  775 78888889999999996543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=1.5e-06  Score=55.87  Aligned_cols=57  Identities=28%  Similarity=0.225  Sum_probs=46.6

Q ss_pred             CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHHHHHHHh
Q 033572           51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS----FYLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS----~YL~sKin~Ak~~L~~el~  107 (116)
                      .++......||||+++++.++|+++|++|....  |++++    .-.-.+|++|+++|.....
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~   65 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK   65 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence            355567899999999999999999999999998  87764    2344689999999976543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=1.5e-06  Score=58.56  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572           49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el  106 (116)
                      ...|+......||||+++++.++|+++|++|....  |+.+ ++   -.-.+|++|+++|....
T Consensus        11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~   74 (99)
T 2yua_A           11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT   74 (99)
T ss_dssp             CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHH
T ss_pred             CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHH
Confidence            56799999999999999999999999999999999  8875 33   34567999999996543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=2.3e-06  Score=56.32  Aligned_cols=54  Identities=26%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETV  105 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~e  105 (116)
                      ++......||||+++++.++|+++|++|....  |+++++.   .-.+|++|+++|...
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~   62 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDA   62 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCH
Confidence            44557899999999999999999999999998  8888754   445799999999653

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=98.15  E-value=6.5e-06  Score=52.23  Aligned_cols=52  Identities=23%  Similarity=0.199  Sum_probs=44.5

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-HHHHHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-FYLQSKVHRAKECLETVY  106 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~YL~sKin~Ak~~L~~el  106 (116)
                      .....||||+++++.++|+++|++|....  |++++ .-.-.+|++|+++|....
T Consensus         8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~   62 (73)
T 2och_A            8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEK   62 (73)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHH
Confidence            45789999999999999999999999998  77654 567778999999996544

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=1.2e-06  Score=56.21  Aligned_cols=55  Identities=24%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el  106 (116)
                      ++......||||+++++.++|+++|++|....  |+++++   -.-.+|++|+++|....
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~   63 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE   63 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHH
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHH
Confidence            55667899999999999999999999999998  887554   45568999999996543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=3e-06  Score=54.74  Aligned_cols=52  Identities=29%  Similarity=0.208  Sum_probs=43.6

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-----HHHHHHHHHHHHHHHH
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-----YLQSKVHRAKECLETV  105 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-----YL~sKin~Ak~~L~~e  105 (116)
                      ......||||+++++.++|+++|++|....  |++++.     -.-.+|++|+++|...
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~   66 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA   66 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence            356899999999999999999999999988  887653     2456899999999643

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.08  E-value=4.3e-06  Score=57.27  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=47.2

Q ss_pred             CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H---HHHHHHHHHHHHHHHHH
Q 033572           50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~---YL~sKin~Ak~~L~~el  106 (116)
                      ..++......||||+++++.++|+++|++|....  |+++. +   -.-.+|++|+++|....
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~   74 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT   74 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            4566678999999999999999999999999998  88764 3   34468999999996543

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=98.08  E-value=2.1e-06  Score=59.96  Aligned_cols=55  Identities=15%  Similarity=0.068  Sum_probs=49.0

Q ss_pred             HHHHHhhCCCCCCCH--HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572           55 PEARQILGVTEQSSW--EEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~--~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~  109 (116)
                      .....||||+++++.  ++|+++||+|.+..  |++|+.-.-.+|++|+++|....+..
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~   66 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYA   66 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHH
Confidence            567889999999888  99999999999999  99999877789999999998877654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=9e-06  Score=53.70  Aligned_cols=53  Identities=28%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-----HHHHHHHHHHHHHHHHHh
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-----YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-----YL~sKin~Ak~~L~~el~  107 (116)
                      .....||||+++++.++|+++|++|....  |++++.     -.-.+|++|+++|.....
T Consensus         9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~   68 (92)
T 2dmx_A            9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK   68 (92)
T ss_dssp             CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence            46899999999999999999999999998  887652     345689999999976543

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=98.05  E-value=1e-05  Score=53.14  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=45.1

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHHh
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el~  107 (116)
                      ......||||+++++.++|+++|++|....  |+++++   -.-.+|++|+++|.....
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~   74 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK   74 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence            356899999999999999999999999998  887643   445689999999976543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=98.02  E-value=1e-05  Score=54.71  Aligned_cols=51  Identities=27%  Similarity=0.166  Sum_probs=42.7

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-----HHHHHHHHHHHHHHHHHh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-----YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-----YL~sKin~Ak~~L~~el~  107 (116)
                      ...||||+++++.++|+++|++|....  |++++.     -.-.+|++|+++|....+
T Consensus         4 ~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~   61 (99)
T 2lgw_A            4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK   61 (99)
T ss_dssp             HHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence            468999999999999999999999999  887653     345689999999966543

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=98.00  E-value=1.6e-06  Score=57.24  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC----------CHHHHHHHHHHHHHHHH
Q 033572           49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG----------SFYLQSKVHRAKECLET  104 (116)
Q Consensus        49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG----------S~YL~sKin~Ak~~L~~  104 (116)
                      ...|+......||||+++++.++|+++|++|....  |+..          ..-.-.+|++|+++|..
T Consensus        10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d   77 (94)
T 1wjz_A           10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN   77 (94)
T ss_dssp             CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCC
Confidence            35578889999999999999999999999999998  7743          23455689999999953

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=97.98  E-value=6.9e-06  Score=58.99  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH----------HHHHHHHHHHHHHHHH
Q 033572           50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF----------YLQSKVHRAKECLETV  105 (116)
Q Consensus        50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~----------YL~sKin~Ak~~L~~e  105 (116)
                      +.|+......||||+++++.++|+++|++|....  |+.+++          -.-.+|++|+++|...
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp   72 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE   72 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCH
Confidence            4577778999999999999999999999999999  876543          5667899999999643

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=97.97  E-value=4.1e-06  Score=62.66  Aligned_cols=56  Identities=14%  Similarity=0.084  Sum_probs=46.4

Q ss_pred             CHHHHHHhhCCCCCCC--HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhh
Q 033572           53 AEPEARQILGVTEQSS--WEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQK  108 (116)
Q Consensus        53 s~~EA~~ILgv~~~~~--~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~  108 (116)
                      ...++..||||+++++  .++|+++||+|....  |++|++-.-.+|++|+++|....+.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR   68 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKY   68 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3467999999999977  699999999999999  9999987788999999999876654

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=97.96  E-value=1.1e-05  Score=51.60  Aligned_cols=50  Identities=24%  Similarity=0.157  Sum_probs=42.3

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVY  106 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el  106 (116)
                      ...||||+++++.++|+++|++|....  |++++   .-.-.+|++|+++|....
T Consensus         5 ~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~   59 (77)
T 1hdj_A            5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPR   59 (77)
T ss_dssp             SHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHH
Confidence            468999999999999999999999998  87754   456678999999995543

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=1.3e-05  Score=55.05  Aligned_cols=55  Identities=25%  Similarity=0.222  Sum_probs=46.1

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHHHHHHH
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS----FYLQSKVHRAKECLETVY  106 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS----~YL~sKin~Ak~~L~~el  106 (116)
                      ++......||||+++++.++|+++|++|....  |+++.    .-.-.+|++|+++|....
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~   77 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEE   77 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHH
Confidence            45577899999999999999999999999998  88763    345568999999996544

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=97.89  E-value=2.5e-05  Score=53.08  Aligned_cols=54  Identities=15%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             HHHHHHhhCCCCCC-CHHHHHHHHHHHHHHh--cCCCC-------HHHHHHHHHHHHHHHHHHh
Q 033572           54 EPEARQILGVTEQS-SWEEILKKYDNLFEQN--AKNGS-------FYLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        54 ~~EA~~ILgv~~~~-~~~~I~~~~~~L~~~N--dkgGS-------~YL~sKin~Ak~~L~~el~  107 (116)
                      ......||||++++ +.++|+++|++|....  |++++       .-.-.+|++|+++|....+
T Consensus        14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~   77 (109)
T 2qsa_A           14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA   77 (109)
T ss_dssp             TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHH
Confidence            35689999999998 9999999999999999  88876       3455689999999975543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=97.55  E-value=2.1e-05  Score=53.04  Aligned_cols=50  Identities=26%  Similarity=0.257  Sum_probs=40.9

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H---HHHHHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~---YL~sKin~Ak~~L~~el  106 (116)
                      ...||||+++++.++|+++|++|.+..  |++++ +   -.-.+|++|+++|....
T Consensus         5 ~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~   60 (103)
T 1bq0_A            5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ   60 (103)
T ss_dssp             STTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSH
T ss_pred             HHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHH
Confidence            468999999999999999999999998  87764 2   34467999999886543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.40  E-value=0.00025  Score=51.48  Aligned_cols=50  Identities=28%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY  106 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el  106 (116)
                      ...||||+++++.++|+++||+|....  |+++ ++   -.-.+|++|+++|....
T Consensus         4 ~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~   59 (210)
T 3apq_A            4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED   59 (210)
T ss_dssp             HHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence            468999999999999999999999998  8764 33   23346999999996543

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=97.35  E-value=2.9e-05  Score=62.58  Aligned_cols=58  Identities=21%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHH
Q 033572           49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVY  106 (116)
Q Consensus        49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el  106 (116)
                      ...|+......||||+++++.++|+++||+|....  |++..   .---.+|++|+++|....
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~   84 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQ   84 (329)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhh
Confidence            45699999999999999999999999999999998  77644   334457999999997653

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=97.29  E-value=0.00014  Score=49.20  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCH--HHH----HHHHHHHHHHHH
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSF--YLQ----SKVHRAKECLET  104 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~--YL~----sKin~Ak~~L~~  104 (116)
                      -..+|||++.++.++|+++||+|....  |+. |.+  ..+    ..|++|+++|..
T Consensus        35 ~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             SCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999999998  654 332  333    368999999875

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=97.07  E-value=0.00094  Score=49.04  Aligned_cols=50  Identities=14%  Similarity=0.177  Sum_probs=40.7

Q ss_pred             HHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCC--CH-------HHHHHHHHHHHHHHHHHh
Q 033572           58 RQILGVTEQS--SWEEILKKYDNLFEQN--AKNG--SF-------YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        58 ~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgG--S~-------YL~sKin~Ak~~L~~el~  107 (116)
                      +.||||++++  +.++|+++|++|....  |+.+  ++       -.-.+||+|+++|....+
T Consensus         4 y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~   66 (171)
T 1fpo_A            4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLM   66 (171)
T ss_dssp             HHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            6799999987  9999999999999998  7643  33       245789999999975443

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=96.81  E-value=0.00072  Score=50.76  Aligned_cols=53  Identities=15%  Similarity=0.077  Sum_probs=43.2

Q ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH------HHHHHHHHHHHHHHHHHh
Q 033572           55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF------YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~------YL~sKin~Ak~~L~~el~  107 (116)
                      +....||||++.++.++|+++|++|....  |+.. .+      -.-.+|++|+++|...-+
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k  178 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ  178 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence            46789999999999999999999999999  7743 22      244579999999987654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=96.62  E-value=0.0034  Score=47.47  Aligned_cols=52  Identities=12%  Similarity=0.047  Sum_probs=41.2

Q ss_pred             HHHHHhhCCCCC--CCHHHHHHHHHHHHHHh--cCCC--CHH-------HHHHHHHHHHHHHHHH
Q 033572           55 PEARQILGVTEQ--SSWEEILKKYDNLFEQN--AKNG--SFY-------LQSKVHRAKECLETVY  106 (116)
Q Consensus        55 ~EA~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkgG--S~Y-------L~sKin~Ak~~L~~el  106 (116)
                      ..-+.||||+++  ++.++|+++||+|....  |+.+  +.-       .-.+||+|+++|....
T Consensus        43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~  107 (207)
T 3bvo_A           43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPL  107 (207)
T ss_dssp             CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            356899999986  78999999999999998  7754  221       2368999999997533

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=96.26  E-value=0.0047  Score=42.19  Aligned_cols=46  Identities=13%  Similarity=0.073  Sum_probs=35.3

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHh--cC----CCCHH---H----HHHHHHHHHHHHH
Q 033572           58 RQILGVTEQSSWEEILKKYDNLFEQN--AK----NGSFY---L----QSKVHRAKECLET  104 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dk----gGS~Y---L----~sKin~Ak~~L~~  104 (116)
                      ..|||++. ++.++|+++||+|....  |+    |.++-   .    -.+|++|+++|..
T Consensus        44 Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd  102 (106)
T 3ag7_A           44 KPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT  102 (106)
T ss_dssp             CCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence            45888885 99999999999999988  65    44532   2    2469999999853

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=95.51  E-value=0.0043  Score=53.10  Aligned_cols=56  Identities=25%  Similarity=0.191  Sum_probs=31.0

Q ss_pred             CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHHh
Q 033572           52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVYQ  107 (116)
Q Consensus        52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el~  107 (116)
                      .....-..||||+++++.++|+++||+|....  |+++ ++   ---.+|++|+++|....+
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~   79 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL   79 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHH
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHH
Confidence            34456789999999999999999999999998  8763 33   233579999999976543

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=95.47  E-value=0.0095  Score=44.14  Aligned_cols=50  Identities=14%  Similarity=0.112  Sum_probs=39.9

Q ss_pred             HHHhh------CCCC-CCCHHHHHHHHHHHHHHh--cCCC-CHHHHHHHHHHHHHHHHHH
Q 033572           57 ARQIL------GVTE-QSSWEEILKKYDNLFEQN--AKNG-SFYLQSKVHRAKECLETVY  106 (116)
Q Consensus        57 A~~IL------gv~~-~~~~~~I~~~~~~L~~~N--dkgG-S~YL~sKin~Ak~~L~~el  106 (116)
                      =..||      |+.+ +++.++|+++|++|-...  |+.+ +.-.-.+||+|+++|....
T Consensus        13 ~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~   72 (181)
T 3uo3_A           13 FYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPL   72 (181)
T ss_dssp             TGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHH
T ss_pred             HHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChH
Confidence            46788      4555 799999999999999998  8866 4555678999999996543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	98.94
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	98.24
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	98.06
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	97.86
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	97.3
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	96.96
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	96.72

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=98.94  E-value=1.9e-09  Score=69.92  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             HHHHHHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572           54 EPEARQILGVTEQS--SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK  109 (116)
Q Consensus        54 ~~EA~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~  109 (116)
                      ..+++.||||++++  +.++|+++|++|...+  |+||++---.+||+|+++|..+..+.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~   69 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNL   69 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHH
Confidence            46788899999985  9999999999999999  99999999999999999999888665

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=98.24  E-value=2.9e-07  Score=62.04  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=46.4

Q ss_pred             HHHHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhh
Q 033572           56 EARQILGVTEQS--SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQK  108 (116)
Q Consensus        56 EA~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~  108 (116)
                      +=.+||||+.++  +.++|+++|++|.+..  |+||++=.-.+|++|.++|....+.
T Consensus         9 ~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR   65 (114)
T d1gh6a_           9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKY   65 (114)
T ss_dssp             HHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHH
Confidence            447899999987  7889999999999999  9999987778999999999876543

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.9e-06  Score=54.24  Aligned_cols=56  Identities=14%  Similarity=0.040  Sum_probs=45.8

Q ss_pred             HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHH----HHHHHHHHHHHHHhhh
Q 033572           54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQS----KVHRAKECLETVYQKK  109 (116)
Q Consensus        54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~s----Kin~Ak~~L~~el~~~  109 (116)
                      .+|+++||+++++++.++|+++|++|...-  |++ +..-.+.    +|++|.++|.++...+
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~~d   77 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999999  765 3443333    6999999997655443

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1.1e-05  Score=50.62  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=38.7

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLET  104 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~  104 (116)
                      ..||||+++++.++|+++|++|....  |+.. ++   -.-.+|++|.++|..
T Consensus         6 Y~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d   58 (75)
T d1xbla_           6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD   58 (75)
T ss_dssp             TTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCC
Confidence            47999999999999999999999998  7653 33   335679999999953

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.4e-05  Score=49.00  Aligned_cols=49  Identities=24%  Similarity=0.167  Sum_probs=40.2

Q ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHHH
Q 033572           58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETVY  106 (116)
Q Consensus        58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~el  106 (116)
                      ..||||+++++.++|+++|++|....  |+...+.   .-.+|++|.++|....
T Consensus         6 Y~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~   59 (77)
T d1hdja_           6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPR   59 (77)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHH
Confidence            57999999999999999999999999  7665543   3467889999996443

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00043  Score=42.75  Aligned_cols=50  Identities=16%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             HHhhCCCCC--CCHHHHHHHHHHHHHHh--cC--CCCHH-------HHHHHHHHHHHHHHHHh
Q 033572           58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AK--NGSFY-------LQSKVHRAKECLETVYQ  107 (116)
Q Consensus        58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dk--gGS~Y-------L~sKin~Ak~~L~~el~  107 (116)
                      ..||||+++  ++.++|+++|+++....  |+  +.++-       ..++||+|.++|....+
T Consensus         4 y~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~   66 (76)
T d1fpoa1           4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLM   66 (76)
T ss_dssp             HHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            579999986  56899999999999999  65  44443       23579999999975443

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00018  Score=46.71  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=41.0

Q ss_pred             cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC---CHHH-------HHHHHHHHHHHH
Q 033572           49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG---SFYL-------QSKVHRAKECLE  103 (116)
Q Consensus        49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG---S~YL-------~sKin~Ak~~L~  103 (116)
                      ...|.. .-..||||+++++.++|+++|++|....  |+..   ++-.       -..|++|+++|.
T Consensus        11 ~~~~~~-d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~   76 (94)
T d1wjza_          11 EQTLKK-DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG   76 (94)
T ss_dssp             SSSSCS-CHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhcc-ChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhC
Confidence            334443 4799999999999999999999999998  7642   2222       245889999984

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.72  E-value=0.0002  Score=46.92  Aligned_cols=51  Identities=16%  Similarity=0.072  Sum_probs=39.8

Q ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHH----HHHHHHHHHHHHHHh
Q 033572           57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQ----SKVHRAKECLETVYQ  107 (116)
Q Consensus        57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~----sKin~Ak~~L~~el~  107 (116)
                      ..++||+++.++.++|+++|+++...-  |+.++   ...+    ..|++|+++|..+-+
T Consensus        35 ~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~   94 (98)
T d1nz6a_          35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ   94 (98)
T ss_dssp             SCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            367999999999999999999999988  65432   2333    459999999976543