Citrus Sinensis ID: 033593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEEEEEcEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHcc
Coil and Loop (DISEMBL)
mdtcpsiknillldsEGKRVAVKYysndwptnsaKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFfvtggedeNELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Flexible Loop (DISEMBL)
mdtcpsiknillldsegKRVAVKYYsndwptnsakEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Low Complexity Region (SEG)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Disordered region (IsUnstruct)
******IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFL*
Disordered Region (DISOPRED)
*DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Disordered Region (DISEMBL)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Disordered Region (DISPRO)
**TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLHYVIVYFLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q84LG4	179	Coatomer subunit zeta-2 O	yes	no	0.895	0.575	0.815	2e-46
Q940S5	177	Coatomer subunit zeta-1 O	yes	no	0.904	0.587	0.807	6e-46
Q8H1F4	181	Coatomer subunit zeta-3 O	no	no	0.895	0.569	0.786	3e-45
Q9MAX5	177	Coatomer subunit zeta-1 O	yes	no	0.904	0.587	0.75	5e-43
Q6Z844	182	Coatomer subunit zeta-2 O	no	no	0.895	0.565	0.747	2e-42
Q5NA06	177	Coatomer subunit zeta-3 O	no	no	0.904	0.587	0.730	3e-42
P35604	177	Coatomer subunit zeta-1 O	yes	no	0.826	0.536	0.464	6e-19
Q5R5F2	177	Coatomer subunit zeta-1 O	yes	no	0.826	0.536	0.454	2e-18
P61924	177	Coatomer subunit zeta-1 O	yes	no	0.826	0.536	0.454	2e-18
P61923	177	Coatomer subunit zeta-1 O	yes	no	0.826	0.536	0.454	2e-18

>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 95/103 (92%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+
Sbjct: 4   DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
            N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLR 106

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q940S5|COPZ1_ARATH Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1

 Score =  182 bits (461), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 95/104 (91%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  L
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLR 104

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 94/103 (91%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
            N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLR 108

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 93/104 (89%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR
Sbjct: 61  DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILR 104

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 94/103 (91%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +
Sbjct: 7   ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLR
Sbjct: 67  GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLR 109

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 94/104 (90%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M 
Sbjct: 1   MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR
Sbjct: 61  DSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLR 104

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 4/99 (4%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           VYK   DL+F+V G   ENEL+L TVL   FD++  +LR
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLR 106

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Bos taurus (taxid: 9913)

>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Pongo abelii (taxid: 9601)

>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Mus musculus (taxid: 10090)

>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
225463400	151	PREDICTED: coatomer subunit zeta-1-like	0.921	0.701	0.858	7e-50
225463398	177	PREDICTED: coatomer subunit zeta-1-like	0.904	0.587	0.875	2e-49
297740639	200	unnamed protein product [Vitis vinifera]	0.904	0.52	0.875	3e-49
449433700	177	PREDICTED: coatomer subunit zeta-2-like	0.904	0.587	0.865	1e-48
225442214	183	PREDICTED: coatomer subunit zeta-2 [Viti	0.878	0.551	0.881	4e-47
350534688	184	nonclathrin coat protein zeta1-COP [Sola	0.895	0.559	0.844	1e-46
351726924	180	nonclathrin coat protein zeta1-COP [Glyc	0.878	0.561	0.871	2e-45
388522947	182	unknown [Lotus japonicus]	0.878	0.554	0.851	2e-45
118483318	136	unknown [Populus trichocarpa]	0.930	0.786	0.794	3e-45
56311396	180	coatomer zeta1 subunit [Medicago truncat	0.878	0.561	0.861	4e-45

>gi|225463400|ref|XP_002273823.1| PREDICTED: coatomer subunit zeta-1-like isoform 2 [Vitis vinifera]

 Score =  200 bits (509), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/106 (85%), Positives = 102/106 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLL 106
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR++
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRIV 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463398|ref|XP_002273766.1| PREDICTED: coatomer subunit zeta-1-like isoform 1 [Vitis vinifera]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 100/104 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740639|emb|CBI30821.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 100/104 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 24  MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 83

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR
Sbjct: 84  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433700|ref|XP_004134635.1| PREDICTED: coatomer subunit zeta-2-like [Cucumis sativus]

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/104 (86%), Positives = 99/104 (95%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           MD+CPSIKNILLLDSEGKRVAVKYYS++WPTNSA+E FEKAVF+KTQK+NAR EAEIAM 
Sbjct: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDEWPTNSARETFEKAVFSKTQKSNARNEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           E N+++YKFVQDLHFFVTGGE ENELILATVLQGFFDAVGLLLR
Sbjct: 61  ENNIVIYKFVQDLHFFVTGGEYENELILATVLQGFFDAVGLLLR 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442214|ref|XP_002277175.1| PREDICTED: coatomer subunit zeta-2 [Vitis vinifera] gi|297743043|emb|CBI35910.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/101 (88%), Positives = 96/101 (95%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK+VFTKTQKTNARTEAEIAM E N
Sbjct: 10  CPSIKNILLLDSEGKRVAVKYYSDDWPTNAAKLAFEKSVFTKTQKTNARTEAEIAMFENN 69

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           V++YKF+QDLHFFVTGG+DENELILATVLQGF DAV LLLR
Sbjct: 70  VVIYKFIQDLHFFVTGGDDENELILATVLQGFSDAVALLLR 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534688|ref|NP_001233898.1| nonclathrin coat protein zeta1-COP [Solanum lycopersicum] gi|7259352|dbj|BAA92781.1| nonclathrin coat protein zeta1-COP [Solanum lycopersicum]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 97/103 (94%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK++FTKTQKTNARTEAEI M E
Sbjct: 9   DSCPVVKNILLLDSEGKRVAVKYYSDDWPTNNAKVAFEKSIFTKTQKTNARTEAEITMFE 68

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
            N+IVYKFVQDLHFFVTGG+DENEL+LATVLQGF+DAV LLLR
Sbjct: 69  NNIIVYKFVQDLHFFVTGGDDENELVLATVLQGFYDAVTLLLR 111

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726924|ref|NP_001236887.1| nonclathrin coat protein zeta1-COP [Glycine max] gi|356526001|ref|XP_003531608.1| PREDICTED: coatomer subunit zeta-1-like [Glycine max] gi|7259348|dbj|BAA92779.1| nonclathrin coat protein zeta1-COP [Glycine max] gi|255626379|gb|ACU13534.1| unknown [Glycine max]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/101 (87%), Positives = 95/101 (94%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK VFTKT KTNARTEAE+ +LE N
Sbjct: 7   CPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENN 66

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           +I+YKFVQDLHFFVTGGEDENELILA+VLQGFFDAV LLLR
Sbjct: 67  IIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLR 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522947|gb|AFK49535.1| unknown [Lotus japonicus]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 96/101 (95%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPS+KNILLLDS+GKRVAVKY+S+DWPTNSA+EAFEK VFTKTQKTNARTEAEI MLE  
Sbjct: 9   CPSVKNILLLDSDGKRVAVKYFSDDWPTNSAQEAFEKLVFTKTQKTNARTEAEITMLENY 68

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           ++VYKFVQDLHFFVTGG++ENELILATVLQ FFD+VGLLLR
Sbjct: 69  IVVYKFVQDLHFFVTGGDEENELILATVLQAFFDSVGLLLR 109

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483318|gb|ABK93561.1| unknown [Populus trichocarpa]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 95/107 (88%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M+ CP +KNILLLD EGKRVA KY+ +DWPTN AKEAFEKAVF KTQKTNAR+E E+ ML
Sbjct: 1   MELCPCVKNILLLDFEGKRVASKYFCDDWPTNGAKEAFEKAVFNKTQKTNARSEVEVTML 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLLH 107
           E N++VYKFVQDLHFFVTGGE+ENE+ILATVLQGFFDAVGLLLR L 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENEVILATVLQGFFDAVGLLLRFLQ 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56311396|emb|CAI29266.1| coatomer zeta1 subunit [Medicago truncatula] gi|388493944|gb|AFK35038.1| unknown [Medicago truncatula] gi|388496304|gb|AFK36218.1| unknown [Medicago truncatula]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 95/101 (94%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTNS+K AFEK VFTKT KTNARTEAEI +LE N
Sbjct: 7   CPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTKTVKTNARTEAEITLLENN 66

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           ++VYKFVQDLHFFVTGG+DENELIL++VLQGFFDAV LLLR
Sbjct: 67  IVVYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLR 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2206026	177	AT1G60970 [Arabidopsis thalian	0.904	0.587	0.807	8.4e-42
TAIR|locus:2133569	181	AT4G08520 [Arabidopsis thalian	0.895	0.569	0.786	7.5e-41
UNIPROTKB|P35604	177	COPZ1 "Coatomer subunit zeta-1	0.826	0.536	0.464	1.4e-18
ZFIN|ZDB-GENE-000406-6	198	copz1 "coatomer protein comple	0.826	0.479	0.444	1.4e-18
UNIPROTKB|E2QZL1	177	COPZ1 "Uncharacterized protein	0.826	0.536	0.454	4.6e-18
UNIPROTKB|F6Y3Y5	186	COPZ1 "Uncharacterized protein	0.826	0.510	0.454	4.6e-18
UNIPROTKB|J9PAP6	177	COPZ1 "Uncharacterized protein	0.826	0.536	0.454	4.6e-18
UNIPROTKB|F8VS17	160	COPZ1 "Coatomer subunit zeta-1	0.826	0.593	0.454	4.6e-18
UNIPROTKB|F8VVA7	198	COPZ1 "Coatomer subunit zeta-1	0.826	0.479	0.454	4.6e-18
UNIPROTKB|F8VWL5	185	COPZ1 "Coatomer subunit zeta-1	0.826	0.513	0.454	4.6e-18

TAIR|locus:2206026 AT1G60970 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 84/104 (80%), Positives = 95/104 (91%)

Query:     1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
             M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  L
Sbjct:     1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query:    61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR
Sbjct:    61 ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLR 104

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2133569 AT4G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 81/103 (78%), Positives = 94/103 (91%)

Query:     2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
             D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct:     6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query:    62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
              N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR
Sbjct:    66 SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLR 108

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P35604 COPZ1 "Coatomer subunit zeta-1" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 46/99 (46%), Positives = 68/99 (68%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L TVL   FD++  +LR
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLR 106

GO:0003674 "molecular_function" evidence=ND

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-000406-6 copz1 "coatomer protein complex, subunit zeta 1" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/99 (44%), Positives = 69/99 (69%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K +L++D++G+R+  KYY + +PT   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    33 TVKAVLIMDNDGERLYAKYYDDTYPTVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 88

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L +VL   FD++  +LR
Sbjct:    89 VYKSNIDLYFYVIGSSHENELMLMSVLNCLFDSLSQMLR 127

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IMP

UNIPROTKB|E2QZL1 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F6Y3Y5 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    21 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 76

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct:    77 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 115

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9PAP6 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F8VS17 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|F8VVA7 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|F8VWL5 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    20 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 75

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct:    76 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 114

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAX5	COPZ1_ORYSJ	No assigned EC number	0.75	0.9043	0.5875	yes	no
Q84LG4	COPZ2_ARATH	No assigned EC number	0.8155	0.8956	0.5754	yes	no
Q940S5	COPZ1_ARATH	No assigned EC number	0.8076	0.9043	0.5875	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	2e-11
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	5e-09

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPT-------NSAK--EAFEKAVFTKTQKTNARTEAE 56
            ++ +L+LDS+G+R+  KYY     +       NS K  + FEK +  KT K        
Sbjct: 7   DVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD----RES 62

Query: 57  IAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           I M    +++ K + D+  ++    +ENE  L  V      A+ L+++
Sbjct: 63  ILMFYDRLVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVK 110

Length = 187

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 7  IKNILLLDSEGKRVAVKYYSNDWPTNSAKE--AFEKAVFTKTQKTNARTEAEIAMLEGNV 64
          IK IL+ + +GK    K+Y+   P +  ++    E+     + +      +         
Sbjct: 2  IKAILIFNRQGKPRLAKWYT---PYSDPEQQKLIEQIYALISARKP--KMSNFIEFNDLK 56

Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDA 98
          ++YK    L+F V   + +NELI+  ++  F ++
Sbjct: 57 VIYKRYATLYFVVIVDDQDNELIILELIHRFVES 90

Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	99.96
KOG0936	182	consensus Clathrin adaptor complex, small subunit	99.95
KOG0934	145	consensus Clathrin adaptor complex, small subunit	99.93
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	99.93
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.92
KOG0935	143	consensus Clathrin adaptor complex, small subunit	99.89
KOG0938	446	consensus Adaptor complexes medium subunit family	96.63
KOG0937	424	consensus Adaptor complexes medium subunit family	96.55
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	96.4
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	95.97
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	94.13
KOG2740	418	consensus Clathrin-associated protein medium chain	92.92
PF03259	91	Robl_LC7: Roadblock/LC7 domain; InterPro: IPR00494	85.58
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	84.81

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-33  Score=202.82  Aligned_cols=102  Identities=51%  Similarity=0.823  Sum_probs=96.9

Q ss_pred             CCCcceEeEEEEEcCCCCEEEEeeCCCCCCC-hHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEe
Q 033593            1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPT-NSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTG   79 (115)
Q Consensus         1 ~~sl~~I~ailIld~~Gkr~~sKyY~~~~~~-~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~   79 (115)
                      +.|+|.|+|++|+|++|+|+++|||++++++ .++|++|||.+|+|++|.+    +||.++||+++|||.+.||+||++|
T Consensus         3 ~~sly~vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt~----~eI~~ldg~~vvYk~~~Dl~fyv~G   78 (175)
T KOG3343|consen    3 PLSLYTVKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKTE----SEILLLDGNTVVYKSVIDLHFYVVG   78 (175)
T ss_pred             ccchhhhheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhccccccc----ceeEEecCcEEEEEecccEEEEEec
Confidence            3589999999999999999999999998877 9999999999999999864    6999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHHhhhCCc
Q 033593           80 GEDENELILATVLQGFFDAVGLLLRLL  106 (115)
Q Consensus        80 ~~~ENEL~l~~~i~~~veaLd~~f~~~  106 (115)
                      +.+||||+|.++++|++|||+.+|++.
T Consensus        79 ~~~ENEl~L~svL~~l~dal~llLr~n  105 (175)
T KOG3343|consen   79 SEEENELMLMSVLTCLFDALSLLLRKN  105 (175)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999864

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=99.96  E-value=1.3e-28  Score=176.72  Aligned_cols=99  Identities=20%  Similarity=0.381  Sum_probs=93.9

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+++||+|++||+|++|||+|  .+..+|+++.++|++.++.|+++ ++++..+.+.++|||+||+|||+++.+.+|||
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~--~~~~e~~kli~~i~~lIs~R~~k-e~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnE   77 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTP--VSDPEQAKLIADIYELISARKPK-ESNFIEGKNEKIVYRRYATLYFVFGVDNDDNE   77 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeecc--CCcHHHHHHHHHHHHHHHcCCch-hcccccccCcEEEeeecCcEEEEEEEcCCCCc
Confidence            7999999999999999999987  47888999999999999999865 78999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCcc
Q 033593           86 LILATVLQGFFDAVGLLLRLLH  107 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~~  107 (115)
                      |+++++||.|||+||++|+|+-
T Consensus        78 l~iL~lIh~FVE~lDr~FgnVC   99 (152)
T COG5030          78 LIILELIHNFVEILDRFFGNVC   99 (152)
T ss_pred             chHHHHHHHHHHHHHHHhccce
Confidence            9999999999999999999863

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.4e-28  Score=175.21  Aligned_cols=98  Identities=20%  Similarity=0.347  Sum_probs=88.8

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEE------ecCeEEEEEEeceEEEEEEe
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAM------LEGNVIVYKFVQDLHFFVTG   79 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~------~~~~~vVyr~~adl~f~vv~   79 (115)
                      ||+|++|+|++||+|++|||+|  .+.+.|+++.+++|..+++|+. +-|+++.      -.+..++||+||+|||+++.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p--~~~~~Qq~lir~vf~lvs~R~~-n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvv   77 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTP--VDEEKQQQLIREVFHLVSKRPD-NVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVV   77 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCc--CChHHHHHHHHHHHHHHHcCCc-hHhhhhccccccCCccceeehheeeeEEEEEEE
Confidence            8999999999999999999998  4899999999999999999984 1233333      25899999999999999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHHhhhCCc
Q 033593           80 GEDENELILATVLQGFFDAVGLLLRLL  106 (115)
Q Consensus        80 ~~~ENEL~l~~~i~~~veaLd~~f~~~  106 (115)
                      |++||||+++|+||.|||+||++|.|+
T Consensus        78 D~sEsEL~iLDLIQvfVEtLDkCF~nV  104 (182)
T KOG0936|consen   78 DSSESELGILDLIQVFVETLDKCFENV  104 (182)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999986

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.4e-26  Score=163.76  Aligned_cols=99  Identities=17%  Similarity=0.325  Sum_probs=94.2

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+++|+.++|||.|++|||++  .+.++|+++++++.+.+.+|+.+ .|+++.+.++++|||+||+|+|+++.+.+|||
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~--~~~~er~~i~re~i~~~Lar~pk-~csfie~kd~kvVyrryasl~f~~~v~~~dNE   77 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEA--LSIKERKKIERELIKSVLARKPK-MCSFIEYKDEKVVYRRYASLFFCVGVEDNDNE   77 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhh--hcHHHHHHHHHHHHHHHHhCCcc-cccchhccCceehhhhhhhEEEEEEEecCCch
Confidence            7999999999999999999997  48999999999999999999754 68999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCcc
Q 033593           86 LILATVLQGFFDAVGLLLRLLH  107 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~~  107 (115)
                      |+++++||.+||.||++|+++-
T Consensus        78 L~~LE~IH~~vE~lDkYFg~VC   99 (145)
T KOG0934|consen   78 LAILEFIHNYVELLDKYFGSVC   99 (145)
T ss_pred             hhHHHHHHHHHHHHHHHhccce
Confidence            9999999999999999999874

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.93  E-value=2.2e-24  Score=153.46  Aligned_cols=98  Identities=32%  Similarity=0.506  Sum_probs=86.0

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+|++|+|++|+||++|||.+.  +.++++++++++.+++.++++. .++++.++++.+|||+++||+|+++++.+|||
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNe   77 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDV--SEEERQKLFEKFIKKKSSRNSK-QSPIFEHDNYRIVYKRYSDLYFVVVGDENENE   77 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTS--TSHHHHHHHHHHHHHHHTSSSS-STSEEEETTEEEEEEEETTEEEEEEESSTSBH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCc--cHHHHHHHHHHHHHHHHhcccc-cceeeecccceeeeEeeccEEEEEEeecccch
Confidence            89999999999999999999653  5556666667777777777532 38999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCc
Q 033593           86 LILATVLQGFFDAVGLLLRLL  106 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~  106 (115)
                      +++++++|.++++|+.+|++.
T Consensus        78 l~~~e~l~~~v~~l~~~~~~v   98 (141)
T PF01217_consen   78 LLLLEFLHRLVEVLDDYFGNV   98 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHhhhhhhhhhccc
Confidence            999999999999999999964

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.5e-24  Score=158.76  Aligned_cols=102  Identities=25%  Similarity=0.407  Sum_probs=96.0

Q ss_pred             CCcceEeEEEEEcCCCCEEEEeeCCCCC---------CChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEece
Q 033593            2 DTCPSIKNILLLDSEGKRVAVKYYSNDW---------PTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQD   72 (115)
Q Consensus         2 ~sl~~I~ailIld~~Gkr~~sKyY~~~~---------~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~ad   72 (115)
                      .|||.|+|+||+|+||+|+++|||.|++         .+.+++++||+++++|+.+..    .+|.+++|++|+|+++.|
T Consensus         3 lsLy~v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~----~~Il~f~d~lV~~k~~~d   78 (187)
T COG5541           3 LSLYDVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDR----ESILMFYDRLVMCKRLDD   78 (187)
T ss_pred             cchheeeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCc----cceeeEcceeeeeeeehh
Confidence            3799999999999999999999999974         577899999999999999875    499999999999999999


Q ss_pred             EEEEEEecCCcchHHHHHHHHHHHHHHHhhhCCcc
Q 033593           73 LHFFVTGGEDENELILATVLQGFFDAVGLLLRLLH  107 (115)
Q Consensus        73 l~f~vv~~~~ENEL~l~~~i~~~veaLd~~f~~~~  107 (115)
                      +.+|++++-+|||..+.+++..+..||+.+++..+
T Consensus        79 v~~yiv~~meeNE~~l~q~f~~ir~Al~li~k~~~  113 (187)
T COG5541          79 VLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPT  113 (187)
T ss_pred             EEEEEecccccccHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999998754

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.8e-22  Score=142.44  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=90.9

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||++|||.|++||+|++|||-|.  +..++++.+.++++.++.|+++-.+.+....+.++++|+||+|+|+++.|..+||
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~--dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDne   78 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQF--DDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNE   78 (143)
T ss_pred             CeEEEEEEccccceeheeeeecc--CchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCch
Confidence            79999999999999999999773  5556788899999999999987667777788888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCcc
Q 033593           86 LILATVLQGFFDAVGLLLRLLH  107 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~~  107 (115)
                      ++.++.||.|||.||.+|+|+-
T Consensus        79 layLe~IHlFVEvLd~fF~NVC  100 (143)
T KOG0935|consen   79 LAYLEHIHLFVEVLDEFFHNVC  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999973

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.036  Score=45.92  Aligned_cols=93  Identities=10%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||.|++|+|..|..++.|.|...   ++ +..  -++|+--.-.+.-.-+++...++...+|-+..+|+++.+..++.|=
T Consensus         1 misglfi~n~rGevlink~fr~d---lk-rs~--~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nv   74 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDD---LK-RSI--VDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANV   74 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhh---hh-hhH--HHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCch
Confidence            78999999999999999999753   32 111  2233322211111236899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhC
Q 033593           86 LILATVLQGFFDAVGLLLR  104 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~  104 (115)
                      .+..+++--+.+.+..+|+
T Consensus        75 a~v~eFl~kl~avm~aYfg   93 (446)
T KOG0938|consen   75 AAVFEFLYKLDAVMNAYFG   93 (446)
T ss_pred             hhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.064  Score=45.14  Aligned_cols=94  Identities=17%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             EeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcchH
Q 033593            7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL   86 (115)
Q Consensus         7 I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENEL   86 (115)
                      +.|+.++|..|+.+.+|=|... -+...=-+|=+.++.+. ..+  ...+++..+|...+|=+..++++.+++..+-|=-
T Consensus         1 ~sa~fild~~G~~lisr~yr~d-v~~s~~~~F~~~l~~~e-~~~--~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~   76 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGD-VPMSSTEKFFRKLFEKE-EGD--ESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAA   76 (424)
T ss_pred             CceEEEEcCCCcEeEeeccccc-CChhhhhhHHHHHhhhc-ccC--CCCCeEEeCCceEEEEeecceEEEEEeccCCCHH
Confidence            4689999999999999999764 23444455665666665 222  1357889999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHhhhC
Q 033593           87 ILATVLQGFFDAVGLLLR  104 (115)
Q Consensus        87 ~l~~~i~~~veaLd~~f~  104 (115)
                      .++++++.+++.+..+|+
T Consensus        77 ~v~~~l~~~~~v~~~y~~   94 (424)
T KOG0937|consen   77 LVLSFLYAVADVFGDYLS   94 (424)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999999998

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.40  E-value=0.055  Score=38.04  Aligned_cols=97  Identities=13%  Similarity=0.198  Sum_probs=66.8

Q ss_pred             cceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHH----HhcCC-CccccceEEecCeEEEEEEeceEEEEEE
Q 033593            4 CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTK----TQKTN-ARTEAEIAMLEGNVIVYKFVQDLHFFVT   78 (115)
Q Consensus         4 l~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k----~~~~~-~~~~~~i~~~~~~~vVyr~~adl~f~vv   78 (115)
                      .+-+.+|+|-|+||-+++.=..+.. ++..-+..|... |..    ++|.+ +++..=+..|+++.++--....+++.++
T Consensus        14 v~Gl~~I~itDrDGvpi~~v~~~~~-~~~~~~~~~~~t-f~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~i   91 (119)
T PF08923_consen   14 VDGLQAIVITDRDGVPIAKVSSDSA-PESAMRPSLLST-FAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFI   91 (119)
T ss_dssp             STTEEEEEEEETTS-EEEEEE-TTS--GGGGSHHHHCC-HHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEE
T ss_pred             cCCeEEEEEECCCCcEEEEecCCCC-cchhhhhHHHHH-HHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEE
Confidence            4558999999999999888555542 333444455433 322    33432 2333457779999999999999999999


Q ss_pred             ecCCcchHHHHHHHHHHHHHHHhh
Q 033593           79 GGEDENELILATVLQGFFDAVGLL  102 (115)
Q Consensus        79 ~~~~ENEL~l~~~i~~~veaLd~~  102 (115)
                      ++++-|==.++++-+-+.+.|..+
T Consensus        92 as~~aN~G~il~l~~~L~~~l~~l  115 (119)
T PF08923_consen   92 ASSNANTGLILSLEEELAPILNEL  115 (119)
T ss_dssp             EETTS-HHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHhHHHHHHHHHHH
Confidence            999999888888877777776643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=95.97  E-value=0.13  Score=39.05  Aligned_cols=44  Identities=23%  Similarity=0.275  Sum_probs=38.6

Q ss_pred             cCeEEEEEEeceEEEEEEecCCcchHHHHHHHHHHHHHHHhhhC
Q 033593           61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR  104 (115)
Q Consensus        61 ~~~~vVyr~~adl~f~vv~~~~ENEL~l~~~i~~~veaLd~~f~  104 (115)
                      +...+|++...++.|.+|.+..||=+..-.+++.++..|...++
T Consensus       102 ~~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~  145 (189)
T PF15001_consen  102 TPKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLK  145 (189)
T ss_pred             CCcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999888865553

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=94.13  E-value=1.5  Score=36.62  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccc-cceEEecCeEEEEEEeceEEEEEEecCCcchH
Q 033593            8 KNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTE-AEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL   86 (115)
Q Consensus         8 ~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~-~~i~~~~~~~vVyr~~adl~f~vv~~~~ENEL   86 (115)
                      +=++|+.+.||+++++| .    ++++=..+-.-+...++--...++ -.-+..+++++||..-+-|+++.+...+|.+-
T Consensus        12 kh~fIlS~AGKPIysr~-G----~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~   86 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY-G----DEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESES   86 (415)
T ss_pred             CeEEEECCCCceeEEec-C----ChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHH
Confidence            45789999999999988 2    333333444444333332211111 23455789999999999999999999999987


Q ss_pred             HHHHHHHHHHHH
Q 033593           87 ILATVLQGFFDA   98 (115)
Q Consensus        87 ~l~~~i~~~vea   98 (115)
                      .|..-++.++.-
T Consensus        87 ~l~~qL~~ly~q   98 (415)
T PF03164_consen   87 QLRKQLDYLYSQ   98 (415)
T ss_pred             HHHHHHHHHHHH
Confidence            777766666543

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.92  E-value=0.35  Score=40.32  Aligned_cols=98  Identities=14%  Similarity=0.201  Sum_probs=63.1

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceE-EEEEEecCCcc
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDL-HFFVTGGEDEN   84 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl-~f~vv~~~~EN   84 (115)
                      ||+++.+.|.+|+..+-|--...    ..-+..+...|+.-++....-+.....--.+--++.-+.+. +|+.+.-.+--
T Consensus         1 mi~siflidtsg~l~lek~~~g~----t~~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~p   76 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGS----TVVRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETP   76 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCc----eeeeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCC
Confidence            79999999999999887765421    12344555555554444321123344444444455555554 44444444445


Q ss_pred             hHHHHHHHHHHHHHHHhhhCCcc
Q 033593           85 ELILATVLQGFFDAVGLLLRLLH  107 (115)
Q Consensus        85 EL~l~~~i~~~veaLd~~f~~~~  107 (115)
                      -|...++++.+++.|..+|+..+
T Consensus        77 PL~~iefL~rv~dv~~eyFg~~s   99 (418)
T KOG2740|consen   77 PLMVIEFLHRVVDVLLEYFGGLS   99 (418)
T ss_pred             ChhHHHHHHHHHHHHHHHhcccC
Confidence            89999999999999999999654

>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []

Probab=85.58  E-value=4.9  Score=25.20  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             CcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCC---ccc--cceEEecCeEEEEEEece-EEEE
Q 033593            3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNA---RTE--AEIAMLEGNVIVYKFVQD-LHFF   76 (115)
Q Consensus         3 sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~---~~~--~~i~~~~~~~vVyr~~ad-l~f~   76 (115)
                      +.+-|++.+++|++|..+.+  ..+...+.+.=.+.-..++..+.+...   .++  .=.+..++..++....++ .+++
T Consensus        11 ~~~gv~~~~l~~~dG~~i~~--~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~i~i~~~~~~~~L~   88 (91)
T PF03259_consen   11 SVPGVRGAVLVDKDGLVIAS--SGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKGEIIITPVGDFYLLV   88 (91)
T ss_dssp             HSTTEEEEEEEETTSEEEEE--TSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEECSTCEEEE
T ss_pred             CCCCeeEEEEEcCCCCEEEE--ecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCEEEEEEcCCCEEEE
Confidence            46789999999999999998  332111122222333444444443211   111  124446777777777777 5555


Q ss_pred             EE
Q 033593           77 VT   78 (115)
Q Consensus        77 vv   78 (115)
                      ++
T Consensus        89 v~   90 (91)
T PF03259_consen   89 VL   90 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.81  E-value=15  Score=31.63  Aligned_cols=91  Identities=13%  Similarity=0.162  Sum_probs=67.3

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHH--HHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCc
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAV--FTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDE   83 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i--~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~E   83 (115)
                      ++-|..+....||.++++=+..  +   .|.++|.-|  |.|.-...  .+.-++.-+...-||+-...+|++++...+.
T Consensus         2 vvlaa~i~t~~Gk~ivsRqf~~--M---sr~RIEgLl~aFpkLv~~~--~qhT~vEt~~VRYVYqP~d~lY~vLITtk~S   74 (512)
T KOG2635|consen    2 VVLAASINTKTGKAIVSRQFRE--M---SRSRIEGLLAAFPKLVSAG--KQHTFVETDSVRYVYQPLDNLYIVLITTKQS   74 (512)
T ss_pred             eEEEEEEeecCCceeeehHhHh--h---hHHHHHHHHHHhHHhhccC--CCccEEecccEEEEEEecccEEEEEEecccc
Confidence            3567788999999998876653  2   255666554  34444322  2467888899999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhh
Q 033593           84 NELILATVLQGFFDAVGLLL  103 (115)
Q Consensus        84 NEL~l~~~i~~~veaLd~~f  103 (115)
                      |=|-=++.|+-|......+.
T Consensus        75 NIleDl~TL~Lfskvipey~   94 (512)
T KOG2635|consen   75 NILEDLETLRLFSKVIPEYC   94 (512)
T ss_pred             chhhHHHHHHHHHHhchhhh
Confidence            98888888877766555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
3tjz_C	153	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-20
2hf6_A	149	Solution Structure Of Human Zeta-Cop Length = 149		1e-19

>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 153

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           VYK   DL+F+V G   ENEL+L TVL   FD++  +LR
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLR 106

>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop Length = 149

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	1e-25
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	7e-11
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	3e-07

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score = 93.1 bits (231), Expect = 1e-25
 Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 12/121 (9%)

Query: 3   TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG 62
           +  ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG
Sbjct: 9   SLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT----HRTDSEIALLEG 64

Query: 63  NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR--------LLHYVIVYFL 114
             +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR        L +   ++  
Sbjct: 65  LTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLA 124

Query: 115 I 115
           +
Sbjct: 125 V 125

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score = 54.6 bits (131), Expect = 7e-11
 Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           I+ IL+ +  GK    K+Y      +  K+   + V       +A+            I+
Sbjct: 2   IRFILIQNRAGKTRLAKWY--MQFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKII 58

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLL-------HYVIVYFLI 115
           Y+    L+F +    ++N L     +  F + +      +       ++  VY ++
Sbjct: 59  YRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           ++ +LL   +GK    K+Y     ++  ++   + +         +            +V
Sbjct: 2   MRFMLLFSRQGKLRLQKWY--LATSDKERKKMVRELMQVVLARKPK-MCSFLEWRDLKVV 58

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRLL-------HYVIVYFLI 115
           YK    L+F       +NELI   ++  + + +      +       ++   YF++
Sbjct: 59  YKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	99.97
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	99.93
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	99.93
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.77
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.75
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	95.91
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	91.67
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	83.62
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	80.75

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=99.97  E-value=3.5e-30  Score=186.38  Aligned_cols=101  Identities=44%  Similarity=0.761  Sum_probs=94.0

Q ss_pred             CCcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecC
Q 033593            2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE   81 (115)
Q Consensus         2 ~sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~   81 (115)
                      .|+|||+|++|+|++||||++|||.+.+++.++|+++|+++|+++++.    +++++.++++++|||+++||+|+++++.
T Consensus         8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~----~~~i~~~~~~~~vy~~~~~Lyfv~~~~~   83 (153)
T 3tjz_C            8 PSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTVVYKSSIDLYFYVIGSS   83 (153)
T ss_dssp             CCSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSC----CCCEEEETTEEEEEEECSSCEEEEEEET
T ss_pred             ccHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----CCCEEEECCEEEEEEEECCEEEEEEEcC
Confidence            589999999999999999999999986568899999999999998542    4799999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHhhh-CCc
Q 033593           82 DENELILATVLQGFFDAVGLLL-RLL  106 (115)
Q Consensus        82 ~ENEL~l~~~i~~~veaLd~~f-~~~  106 (115)
                      +|||++++++||.|+|+|+.+| ++.
T Consensus        84 ~eNel~ile~L~~~ve~l~~yf~~~v  109 (153)
T 3tjz_C           84 YENELMLMTVLNCLFDSLSQMLRKNV  109 (153)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCChHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999 654

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.93  E-value=9.8e-25  Score=157.85  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=91.9

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+|++|+|++||+|++|||.+.  +.++|+++++++++++.++++ ..++++.++++++|||++++|+|+++++.++||
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne   77 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKP-KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE   77 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCS-SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCC-CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            79999999999999999999974  788899999999999998764 248999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCc
Q 033593           86 LILATVLQGFFDAVGLLLRLL  106 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~  106 (115)
                      |+++++||.|+|+|+.+|++.
T Consensus        78 l~~le~L~~~vevl~~yf~~v   98 (158)
T 1w63_Q           78 LITLELIHRYVELLDKYFGSV   98 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999974

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=99.93  E-value=1.5e-24  Score=153.99  Aligned_cols=98  Identities=17%  Similarity=0.308  Sum_probs=91.6

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+|++|+|++||+|++|||.+  ++.++|+++++++++++.+++++ .++++.++++++|||+++||+|+++++.++||
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~--~~~~~~~~~~~~f~~~v~~~~~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~   77 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQ--FDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN   77 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSC--CCHHHHHHHHHHHHHHHHTCCTT-SCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCC--CChhhhHHHHHHHHHHHhcCCCC-CCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence            7999999999999999999987  47888999999999999976542 58999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCc
Q 033593           86 LILATVLQGFFDAVGLLLRLL  106 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~  106 (115)
                      |+++++||.++|+|+.+|++.
T Consensus        78 l~~le~L~~~ve~l~~yf~~v   98 (142)
T 2vgl_S           78 LAYLEAIHNFVEVLNEYFHNV   98 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999974

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.77  E-value=2.4e-18  Score=140.36  Aligned_cols=96  Identities=11%  Similarity=0.225  Sum_probs=79.9

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+|++|+|++||+|++|||.+. .+.....+|++.+.    ...+...++++.++++++||+++++|+|+++++.++||
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~-~~~~~~~~f~~~v~----~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~   75 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDD-IGRNAVDAFRVNVI----HARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA   75 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSS-CCHHHHHHHHHHTT----TCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred             CeEEEEEECCCCCEEEEEecCCC-CChhHHHHHHHHHh----ccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            89999999999999999999974 23333444444333    22222357999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCc
Q 033593           86 LILATVLQGFFDAVGLLLRLL  106 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~  106 (115)
                      |+++++||.|+|+|+.+|++.
T Consensus        76 l~~le~L~~~v~vl~~yf~~v   96 (435)
T 2vgl_M           76 AMVFEFLYKMCDVMAAYFGKI   96 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999974

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.75  E-value=5e-18  Score=138.04  Aligned_cols=98  Identities=17%  Similarity=0.212  Sum_probs=84.8

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE   85 (115)
                      ||+|++|+|++||+|++|||.+.. +.....+|++.+.++....   ..++++.++++++||++++||+|+++++.++||
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~-~~~~~~~f~~~v~~~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~   77 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDV-DMSEVEHFMPILMEKEEEG---MLSPILAHGGVRFMWIKHNNLYLVATSKKNACV   77 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSC-TTTTHHHHHHHHHHHHHTS---CCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred             ceEEEEEECCCCCEEEEEecCCCC-ChHHHHHHHHHHhhccccC---CCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            899999999999999999998742 2334677888887765411   146999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCcc
Q 033593           86 LILATVLQGFFDAVGLLLRLLH  107 (115)
Q Consensus        86 L~l~~~i~~~veaLd~~f~~~~  107 (115)
                      |+++++||.|+|+|+.+|++.+
T Consensus        78 l~~le~L~~~v~~l~~yf~~v~   99 (423)
T 1w63_M           78 SLVFSFLYKVVQVFSEYFKELE   99 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999998753

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=95.91  E-value=0.13  Score=36.42  Aligned_cols=97  Identities=12%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             CcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCC-----CccccceEEecCeEEEEEEeceEEEEE
Q 033593            3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTN-----ARTEAEIAMLEGNVIVYKFVQDLHFFV   77 (115)
Q Consensus         3 sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~-----~~~~~~i~~~~~~~vVyr~~adl~f~v   77 (115)
                      +..-+++|+|-|++|-+++.-..+.. +...-+..|... |..+..+.     +++..=|..|+++.+|--...-+++.+
T Consensus        34 rv~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsT-f~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~  111 (143)
T 3cpt_A           34 SVEGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSF  111 (143)
T ss_dssp             GSTTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             ccCCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhh-HHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEE
Confidence            35568999999999999998887653 445556677766 55444332     233345777999999988999999999


Q ss_pred             EecCCcchHHHHHHHHHHHHHHHh
Q 033593           78 TGGEDENELILATVLQGFFDAVGL  101 (115)
Q Consensus        78 v~~~~ENEL~l~~~i~~~veaLd~  101 (115)
                      +++++-|==.++.+=+.+...|+.
T Consensus       112 Ias~~aNtG~Il~Le~~L~p~l~~  135 (143)
T 3cpt_A          112 IASSSANTGLIVSLEKELAPLFEE  135 (143)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCchhHhhhHHHHHHHHHH
Confidence            999999987777765555555544

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=91.67  E-value=2.7  Score=30.08  Aligned_cols=97  Identities=8%  Similarity=-0.001  Sum_probs=64.8

Q ss_pred             eEeEEEEEcCCCCEEEEeeCCCCC---CChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCC
Q 033593            6 SIKNILLLDSEGKRVAVKYYSNDW---PTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGED   82 (115)
Q Consensus         6 ~I~ailIld~~Gkr~~sKyY~~~~---~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~   82 (115)
                      ||...+|--.....+|+.+++...   .+..+-+++-+.+.+++...++  .--.+..+++.+-|-.-.++.+++++|.+
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~--~r~s~~~~~y~fhy~~~~gl~~l~i~d~~   79 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSP--TRCTLEAGAMTFHYIIEQGVCYLVLCEAA   79 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSC--SEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence            677777776544566667776421   1233456666788888765221  11345678999999999999999999998


Q ss_pred             cchHHHHHHHHHHHHHHHhhhC
Q 033593           83 ENELILATVLQGFFDAVGLLLR  104 (115)
Q Consensus        83 ENEL~l~~~i~~~veaLd~~f~  104 (115)
                      -..-....+|+-+.+-...-++
T Consensus        80 yp~r~af~fL~~i~~~F~~~~~  101 (196)
T 2nut_C           80 FPKKLAFAYLEDLHSEFDEQHG  101 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHhcc
Confidence            8888777777766655544443

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=83.62  E-value=9.6  Score=26.98  Aligned_cols=82  Identities=9%  Similarity=0.015  Sum_probs=58.2

Q ss_pred             CCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcchHHHHHHHHHHH
Q 033593           17 GKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFF   96 (115)
Q Consensus        17 Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENEL~l~~~i~~~v   96 (115)
                      |..+++.|-+.. .+   -+..-+.+.+++..++.|   ..+..+++.+=|..-.++.++++.|.+-.-.....+|+-+.
T Consensus        54 G~~VLae~t~~~-gn---f~~iak~ll~kl~~~~~r---~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~  126 (169)
T 2vx8_A           54 GTTILAKHAWCG-GN---FLEVTEQILAKIPSENNK---LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK  126 (169)
T ss_dssp             TTEEEEEEESSC-BS---HHHHHHHHHTTSCSSCEE---EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCC-CC---HHHHHHHHHhhCCCCCCc---eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHH
Confidence            679999885432 22   334556777776653322   45667999999999999999999999887777777777776


Q ss_pred             HHHHhhhCC
Q 033593           97 DAVGLLLRL  105 (115)
Q Consensus        97 eaLd~~f~~  105 (115)
                      +-...-+++
T Consensus       127 ~eF~~~y~~  135 (169)
T 2vx8_A          127 KRFQTTYGS  135 (169)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhhh
Confidence            666555543

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=80.75  E-value=11  Score=25.69  Aligned_cols=97  Identities=9%  Similarity=-0.098  Sum_probs=58.9

Q ss_pred             EeEEEEEcCCC--CEEEEeeCCCCCCCh---HHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEE-EeceEEEEEEec
Q 033593            7 IKNILLLDSEG--KRVAVKYYSNDWPTN---SAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK-FVQDLHFFVTGG   80 (115)
Q Consensus         7 I~ailIld~~G--kr~~sKyY~~~~~~~---~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr-~~adl~f~vv~~   80 (115)
                      |-+++|+-..+  -.+++..++-...+.   ...++|-..+-+.+.++...+.-.-+..++|++=|- +..++.+++++|
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~D   86 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITD   86 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence            45665665433  678888887532122   112444333333333322111224566799988887 779999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHhhh
Q 033593           81 EDENELILATVLQGFFDAVGLLL  103 (115)
Q Consensus        81 ~~ENEL~l~~~i~~~veaLd~~f  103 (115)
                      .+--.-+-..+|+-+.+-...-+
T Consensus        87 ~~yp~rvAF~~L~~i~~eF~~~y  109 (144)
T 3bw6_A           87 KEYPVRPAYTLLNKILDEYLVAH  109 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCChhHHHHHHHHHHHHHHHHc
Confidence            88888877777776666554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	1e-11
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	7e-11

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	99.93
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	99.78
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	96.34
d1vetb_	118	Late endosomal/lysosomal Mp1 interacting protein p	87.54

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.032  Score=36.60  Aligned_cols=97  Identities=12%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCC-----CccccceEEecCeEEEEEEeceEEEEE
Q 033593            3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTN-----ARTEAEIAMLEGNVIVYKFVQDLHFFV   77 (115)
Q Consensus         3 sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~-----~~~~~~i~~~~~~~vVyr~~adl~f~v   77 (115)
                      +..=++||+|-|++|-.+++=+-+.. +...-+..|... |.....+.     +++.+=+..|+++.+|.-...-+++.+
T Consensus        13 ~v~Gl~~I~iTDrDGVpv~~v~~~~~-p~~~~~~~~lst-f~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~   90 (116)
T d3cpta1          13 SVEGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSF   90 (116)
T ss_dssp             GSTTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             hcCCeEEEEEEcCCCcEEEEecCCCC-hhhhcchHHHHH-HHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEE
Confidence            45568999999999999988766543 343445555554 43333222     233355788999999999999999999


Q ss_pred             EecCCcchHHHHHHHHHHHHHHHh
Q 033593           78 TGGEDENELILATVLQGFFDAVGL  101 (115)
Q Consensus        78 v~~~~ENEL~l~~~i~~~veaLd~  101 (115)
                      +++++-|==+++.+-+-+-..|+.
T Consensus        91 ia~~~aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          91 IASSSANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCChHHHHHHHHHHHHHHhh
Confidence            999999988888776666655543

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.54  E-value=2.2  Score=26.81  Aligned_cols=95  Identities=14%  Similarity=0.162  Sum_probs=64.6

Q ss_pred             cceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhc---CC-Cccc--cceEEecCeEEEEEEeceEEEEE
Q 033593            4 CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQK---TN-ARTE--AEIAMLEGNVIVYKFVQDLHFFV   77 (115)
Q Consensus         4 l~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~---~~-~~~~--~~i~~~~~~~vVyr~~adl~f~v   77 (115)
                      .+-|++.+++++||-.+.+..-..  .+.+.-.+.-..++....+   +. +.++  .-++.+++-.++....+|.++.+
T Consensus        16 t~GV~~avlvs~DGl~ia~~~~~~--~d~~~lAAi~a~~l~~~~~~a~~~~~~G~~~qviie~~~G~l~i~~~g~~~L~v   93 (118)
T d1vetb_          16 TGGVQSTLLLNNEGSLLAYSGYGD--TDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCM   93 (118)
T ss_dssp             CTTEEEEEEECTTCCEEEEEECCS--SCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCCeeEEEEECCCCCeeeecCCCc--cCHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCCEEEEEEcccCeEEE
Confidence            578999999999999997754332  4677777888888876542   21 1122  23556776666666678999999


Q ss_pred             EecCCcchHHHHHHHHHHHHHHH
Q 033593           78 TGGEDENELILATVLQGFFDAVG  100 (115)
Q Consensus        78 v~~~~ENEL~l~~~i~~~veaLd  100 (115)
                      +++++-|-=.+.--++..+.-|+
T Consensus        94 la~~~~~lGll~~e~~~~~~~L~  116 (118)
T d1vetb_          94 YAKETVGFGMLKAKAQALVQYLE  116 (118)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCchHHHHHHHHHHHHhc
Confidence            99988775555444555555443