Citrus Sinensis ID: 033605

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccEEEcccccHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEEcHHHHccccccc
Coil and Loop (DISEMBL)
MKLKQLESVLgdleqfsnpkveleqyptgphiaSRMLYTAensfgdvsnkvvadfgcgcgtlGAAATLLGADQVIAIDIDSDSLELASEnaadleldiDFVQCDirnlewrgkyi
Flexible Loop (DISEMBL)
mklkqlesVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENaadleldidfVQCDIRNLEWRGKYI
Low Complexity Region (SEG)
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFgcgcgtlgaaatllgaDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI
Disordered region (IsUnstruct)
*****************************PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG***
Disordered Region (DISOPRED)
*KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW*G***
Disordered Region (DISEMBL)
********VLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI
Disordered Region (DISPRO)
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKYI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q8K1A0	209	Methyltransferase-like pr	yes	no	0.965	0.531	0.5	1e-27
Q9NRN9	209	Methyltransferase-like pr	yes	no	0.913	0.502	0.528	3e-27
Q57732	219	Uncharacterized protein M	yes	no	0.921	0.484	0.440	8e-19
Q1QA78	308	Ribosomal protein L11 met	yes	no	0.582	0.217	0.430	1e-07
B0VLL0	301	Ribosomal protein L11 met	yes	no	0.565	0.215	0.469	2e-07
A5IN97	264	Ribosomal protein L11 met	yes	no	0.626	0.272	0.383	2e-07
Q4FRP0	308	Ribosomal protein L11 met	yes	no	0.582	0.217	0.430	2e-07
B1L841	264	Ribosomal protein L11 met	yes	no	0.626	0.272	0.383	2e-07
C4K4P6	305	Ribosomal protein L11 met	yes	no	0.565	0.213	0.424	3e-07
A7MXI3	295	Ribosomal protein L11 met	yes	no	0.565	0.220	0.439	3e-07

>sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5 OS=Mus musculus GN=Mettl5 PE=2 SV=2

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           +KLK+LES L +++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NK VAD GCGCG
Sbjct: 4   LKLKELESRLQEVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGCG 63

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111
            L   A +LGA   +  DID D+LE+ ++N  + EL ++D +QCD+ +L  R
Sbjct: 64  VLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSNR 115

Probable methyltransferase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9NRN9|METL5_HUMAN Methyltransferase-like protein 5 OS=Homo sapiens GN=METTL5 PE=1 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD GCGCG
Sbjct: 4   VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
            L     +LGA   +  DID D+LE+ + NA + EL +ID VQCD+
Sbjct: 64  VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV 109

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q57732|Y284_METJA Uncharacterized protein MJ0284 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0284 PE=4 SV=1

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           +K K LE +L  L++  NPK +LEQY     +A+ +L+ A N F    N VV D GCG G
Sbjct: 2   IKKKHLEMMLDSLKRHPNPKADLEQYTIDGKLAADILFFAVNDF---YNNVVIDLGCGTG 58

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
            L   + +LGA + I IDID +S+E A ENA  L +D+DF   DIR+++
Sbjct: 59  RLAIGSKILGAKRAIGIDIDRESIEAAKENAKKLNVDVDFYCMDIRDVD 107

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q1QA78|PRMA_PSYCK Ribosomal protein L11 methyltransferase OS=Psychrobacter cryohalolentis (strain K5) GN=prmA PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 28  TGPHIASRML--YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           TG H  +R+   +  E    D+++KVV D+GCG G LG AA LLGA  V A+DID  ++ 
Sbjct: 142 TGYHATTRLCLDWLTEQ---DLTDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAVL 198

Query: 86  LASENAADLELD 97
             ++NAA   +D
Sbjct: 199 ATNQNAARNSVD 210

Methylates ribosomal protein L11.

Psychrobacter cryohalolentis (strain K5) (taxid: 335284)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B0VLL0|PRMA_ACIBS Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii (strain SDF) GN=prmA PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H AS  L        DV NK+V D+GCG G LG AA LLGA +V A DID  ++ 
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKNKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196

Query: 86  LASENA 91
              +NA
Sbjct: 197 ATKQNA 202

Methylates ribosomal protein L11.

Acinetobacter baumannii (strain SDF) (taxid: 509170)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5IN97|PRMA_THEP1 Ribosomal protein L11 methyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=prmA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  +RM       +    N V+ D GCG G L  AA  LGA QV+A+D+D  ++E
Sbjct: 108 FGTGLHPTTRMSVFFLKKYLKEGNTVL-DVGCGTGILAIAAKKLGASQVVAVDVDEQAVE 166

Query: 86  LASENAADLELDI 98
           +A EN    ++D+
Sbjct: 167 VAEENVRKNDVDV 179

Methylates ribosomal protein L11.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q4FRP0|PRMA_PSYA2 Ribosomal protein L11 methyltransferase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=prmA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 28  TGPHIASRML--YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           TG H  +R+   +  E    D+ +KVV D+GCG G LG AA LLGA  V A+DID  ++ 
Sbjct: 142 TGYHATTRLCLDWLTEQ---DLKDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAVL 198

Query: 86  LASENAADLELD 97
             ++NAA   +D
Sbjct: 199 ATNQNAARNSVD 210

Methylates ribosomal protein L11.

Psychrobacter arcticus (strain DSM 17307 / 273-4) (taxid: 259536)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B1L841|PRMA_THESQ Ribosomal protein L11 methyltransferase OS=Thermotoga sp. (strain RQ2) GN=prmA PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  +RM       +    N V+ D GCG G L  AA  LGA QV+A+D+D  ++E
Sbjct: 108 FGTGLHPTTRMSVFFLKKYLKEGNTVL-DVGCGTGILAIAAKKLGASQVVAVDVDEQAVE 166

Query: 86  LASENAADLELDI 98
           +A EN    ++D+
Sbjct: 167 VAEENVRKNDVDV 179

Methylates ribosomal protein L11.

Thermotoga sp. (strain RQ2) (taxid: 126740)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C4K4P6|PRMA_HAMD5 Ribosomal protein L11 methyltransferase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=prmA PE=3 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  + +     +S  D+ NK++ DFGCG G L  AA  LGA Q I IDID  ++E
Sbjct: 144 FGTGTHPTTALCLEWLDSL-DLQNKILIDFGCGSGILAIAALKLGAKQAIGIDIDPQAIE 202

Query: 86  LASENA 91
            + +NA
Sbjct: 203 ASRDNA 208

Methylates ribosomal protein L11.

Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) (taxid: 572265)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A7MXI3|PRMA_VIBHB Ribosomal protein L11 methyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=prmA PE=3 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  + +      S  D+S K V DFGCG G L  AA  LGA++VI IDID  +L+
Sbjct: 138 FGTGTHPTTALCLEWLESL-DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQ 196

Query: 86  LASENA 91
            + +NA
Sbjct: 197 ASRDNA 202

Methylates ribosomal protein L11.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
224142165	213	predicted protein [Populus trichocarpa]	1.0	0.539	0.826	2e-51
225445168	220	PREDICTED: methyltransferase-like protei	1.0	0.522	0.808	5e-50
255546409	175	S-adenosylmethionine-dependent methyltra	1.0	0.657	0.834	8e-45
115466582	227	Os06g0162600 [Oryza sativa Japonica Grou	0.973	0.493	0.758	3e-44
222635010	772	hypothetical protein OsJ_20224 [Oryza sa	0.973	0.145	0.758	1e-43
351722721	169	uncharacterized protein LOC100305753 [Gl	1.0	0.680	0.713	3e-43
357125190	222	PREDICTED: methyltransferase-like protei	0.973	0.504	0.758	5e-43
388509432	207	unknown [Lotus japonicus]	0.965	0.536	0.738	9e-43
242094784	209	hypothetical protein SORBIDRAFT_10g00438	1.0	0.550	0.721	7e-42
326488038	213	predicted protein [Hordeum vulgare subsp	0.973	0.525	0.732	6e-41

>gi|224142165|ref|XP_002324429.1| predicted protein [Populus trichocarpa] gi|222865863|gb|EEF02994.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 107/115 (93%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLES+LG+L+QFSNPK ELEQYPTGPHIASRMLYTAENS GDVSNK+VADFGCGCG
Sbjct: 1   MKLKQLESMLGELQQFSNPKAELEQYPTGPHIASRMLYTAENSLGDVSNKIVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115
           TLGAAA+L+GA+QVI IDIDS+SLE+AS NA DLELDI+F+QCDIRNL WRG  +
Sbjct: 61  TLGAAASLMGAEQVIGIDIDSESLEIASLNAEDLELDINFIQCDIRNLVWRGPIV 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445168|ref|XP_002284097.1| PREDICTED: methyltransferase-like protein 5 [Vitis vinifera] gi|297738789|emb|CBI28034.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 103/115 (89%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLES LGDL+QFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG
Sbjct: 1   MKLKQLESFLGDLQQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115
           TLG AA LLGA+ VI +DID  SLE+AS NA DLELD++FV CD++NL WRG+ +
Sbjct: 61  TLGVAAALLGAEHVIGLDIDPQSLEIASLNAEDLELDMNFVHCDVKNLGWRGQIV 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546409|ref|XP_002514264.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546720|gb|EEF48218.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 107/115 (93%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLES LGDL+QFSNPK+ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG
Sbjct: 1   MKLKQLESHLGDLQQFSNPKIELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115
           TLGAAA LLGA+QVI ID+DS+SLE+AS NA +LELDI+F+QCD+RNL WRG  +
Sbjct: 61  TLGAAAALLGAEQVIGIDVDSESLEIASLNAEELELDINFIQCDVRNLGWRGHIV 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115466582|ref|NP_001056890.1| Os06g0162600 [Oryza sativa Japonica Group] gi|55296080|dbj|BAD67642.1| putative early nodule-specific-like protein ENOD8 [Oryza sativa Japonica Group] gi|113594930|dbj|BAF18804.1| Os06g0162600 [Oryza sativa Japonica Group] gi|215694922|dbj|BAG90113.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197644|gb|EEC80071.1| hypothetical protein OsI_21788 [Oryza sativa Indica Group]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 96/112 (85%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LGDL+QF+ PKVELEQY TGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGDLQQFTAPKVELEQYATGPHIASRMLYTAENSFDDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112
           TL  A++LL A+ V+ IDID  SLELA ENAADLELDID +QCDI+NL  RG
Sbjct: 61  TLSVASSLLDAEHVVGIDIDPQSLELAQENAADLELDIDLIQCDIKNLNLRG 112

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222635010|gb|EEE65142.1| hypothetical protein OsJ_20224 [Oryza sativa Japonica Group]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 96/112 (85%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LGDL+QF+ PKVELEQY TGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGDLQQFTAPKVELEQYATGPHIASRMLYTAENSFDDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112
           TL  A++LL A+ V+ IDID  SLELA ENAADLELDID +QCDI+NL  RG
Sbjct: 61  TLSVASSLLDAEHVVGIDIDPQSLELAQENAADLELDIDLIQCDIKNLNLRG 112

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722721|ref|NP_001236230.1| uncharacterized protein LOC100305753 [Glycine max] gi|255626525|gb|ACU13607.1| unknown [Glycine max]

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 98/115 (85%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L+QF  PKVELEQYPTGPHIASRML+TAENSF DVS+KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLQQFPQPKVELEQYPTGPHIASRMLFTAENSFEDVSDKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115
           TLG AA LL A+ V+ IDID +SLE+AS NA +LE+DIDF+Q ++ +L WRG+ +
Sbjct: 61  TLGVAAALLSAEHVLGIDIDPESLEIASNNAEELEVDIDFIQSNVMDLGWRGRIV 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125190|ref|XP_003564278.1| PREDICTED: methyltransferase-like protein 5-like [Brachypodium distachyon]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 93/112 (83%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QFSNPKVELEQY TGPHIASRMLYTAENSFGD++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFSNPKVELEQYATGPHIASRMLYTAENSFGDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112
           TL  A+ LL A+ V  IDID  SLELA ENA DLELDID +QCDI+NL  +G
Sbjct: 61  TLAVASALLDAEHVTGIDIDLQSLELAQENADDLELDIDLIQCDIKNLNLKG 112

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509432|gb|AFK42782.1| unknown [Lotus japonicus]

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 98/111 (88%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L+QF +PKVELEQYPTGPHIASRML+TAENSFGDVS+KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLDQFPHPKVELEQYPTGPHIASRMLFTAENSFGDVSDKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           TLG AA LLGA+ V+ IDID +SLE+A+ NA +LELD+DF+Q ++ +L WR
Sbjct: 61  TLGIAAALLGAEHVVCIDIDPESLEIATLNAEELELDMDFIQSNLLDLGWR 111

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094784|ref|XP_002437882.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor] gi|241916105|gb|EER89249.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 93/115 (80%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QF NPKVELEQYPTGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFPNPKVELEQYPTGPHIASRMLYTAENSFDDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115
           TL   + LL A+ V+ IDID  SLELA ENAADLELDID V  DI+NL  +G ++
Sbjct: 61  TLAVGSALLEAEHVLGIDIDPQSLELAQENAADLELDIDLVWSDIKNLNLKGVHV 115

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326488038|dbj|BAJ89858.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326531960|dbj|BAK01356.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 91/112 (81%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QF +PKVELEQY TGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFPDPKVELEQYATGPHIASRMLYTAENSFDDIAGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112
           TL  A+ LL A+ V  IDID  SLELA ENA DLELDID +QCDI+NL  +G
Sbjct: 61  TLAIASALLDAEHVTGIDIDLQSLELAQENATDLELDIDLIQCDIKNLNLKG 112

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2117813	208	AT4G28830 [Arabidopsis thalian	0.973	0.538	0.633	5.2e-33
UNIPROTKB|F1N6B1	208	METTL5 "Uncharacterized protei	0.965	0.533	0.446	2.7e-20
UNIPROTKB|E2RR00	209	METTL5 "Uncharacterized protei	0.965	0.531	0.437	4.4e-20
UNIPROTKB|F1NZ60	217	METTL5 "Uncharacterized protei	0.939	0.497	0.440	5.7e-20
MGI|MGI:1922672	209	Mettl5 "methyltransferase like	0.965	0.531	0.410	3.1e-19
UNIPROTKB|B8ZZC8	244	METTL5 "Methyltransferase-like	0.913	0.430	0.443	4e-19
UNIPROTKB|B8ZZE3	198	METTL5 "Methyltransferase like	0.913	0.530	0.443	4e-19
UNIPROTKB|E7EMN2	164	METTL5 "Methyltransferase-like	0.913	0.640	0.443	4e-19
UNIPROTKB|Q9NRN9	209	METTL5 "Methyltransferase-like	0.913	0.502	0.443	4e-19
ZFIN|ZDB-GENE-041010-21	207	mettl5 "methyltransferase like	0.913	0.507	0.443	4e-19

TAIR|locus:2117813 AT4G28830 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 71/112 (63%), Positives = 83/112 (74%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             MKLKQLE +LGDLEQFSNPKVE EQYPTGPHIASRML+TAENS+GD+++KVVADF     
Sbjct:     1 MKLKQLEGLLGDLEQFSNPKVEFEQYPTGPHIASRMLFTAENSYGDITDKVVADFGCGCG 60

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112
                          VI  DID +SLE A+ NA +LE++IDFVQCDI  LE +G
Sbjct:    61 TLSAAAALLDAASVIGFDIDPESLETATLNAEELEVEIDFVQCDITKLELKG 112

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1N6B1 METTL5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 50/112 (44%), Positives = 67/112 (59%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L  ++ F  PKV LEQYPT PHIA+ MLYT  N++GD+ NKVVAD      
Sbjct:     4 LKLKELESRLQQVDGFEKPKVLLEQYPTRPHIAACMLYTIHNTYGDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111
                           +  DID D+LE+ + N  + EL ++D VQCD+ +L  R
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDVVQCDVCSLSNR 115

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RR00 METTL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 49/112 (43%), Positives = 67/112 (59%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 LKLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111
                           +  DID D+LE+ + N  + EL ++D VQCD+R+L  R
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEVFNRNVEEFELTNVDMVQCDVRSLSNR 115

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NZ60 METTL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/109 (44%), Positives = 66/109 (60%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L  ++ F +PKV LEQYPT PHIA+ MLYT  N+F D+ NK VAD      
Sbjct:     9 LKLKELESCLQQVDTFESPKVLLEQYPTRPHIAACMLYTIHNTFDDIENKTVADLGCGCG 68

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108
                           +  DID+++LE+ + N  D EL ++D VQCD+ +L
Sbjct:    69 MLSIGSAMLGAGLCVGFDIDAEALEIFNSNLEDFELTNVDVVQCDVSSL 117

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1922672 Mettl5 "methyltransferase like 5" [Mus musculus (taxid:10090)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/112 (41%), Positives = 67/112 (59%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L +++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NK VAD      
Sbjct:     4 LKLKELESRLQEVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111
                           +  DID D+LE+ ++N  + EL ++D +QCD+ +L  R
Sbjct:    64 VLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSNR 115

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|B8ZZC8 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 64/106 (60%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
                           +  DID D+LE+ + NA + EL +ID VQCD+
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV 109

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B8ZZE3 METTL5 "Methyltransferase like 5, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 64/106 (60%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
                           +  DID D+LE+ + NA + EL +ID VQCD+
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV 109

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E7EMN2 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 64/106 (60%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
                           +  DID D+LE+ + NA + EL +ID VQCD+
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV 109

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q9NRN9 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 64/106 (60%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
                           +  DID D+LE+ + NA + EL +ID VQCD+
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV 109

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-21 mettl5 "methyltransferase like 5" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 61/106 (57%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             MKLK+LES L  ++ F  PK+ LEQYPT PHIA  MLYT  N+F D+ NK+VAD      
Sbjct:     1 MKLKELESCLQQVDGFEEPKILLEQYPTSPHIAGCMLYTIHNTFDDIQNKLVADLGCGCG 60

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
                           +  DID D+L++   N  + EL +ID VQCD+
Sbjct:    61 VLSIGAAVLDAGLCVGFDIDEDALDIFRGNVEEFELPNIDVVQCDV 106

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	6e-35
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	1e-11
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	9e-10
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	2e-09
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	3e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-09
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	1e-08
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	1e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-08
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	3e-08
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	5e-08
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	1e-07
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	3e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-06
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	1e-06
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	2e-06
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	3e-06
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	8e-06
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	1e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	2e-05
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	3e-05
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	4e-05
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	5e-05
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	5e-05
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	7e-05
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	9e-05
TIGR03704	251	TIGR03704, PrmC_rel_meth, putative protein-(glutam	9e-05
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	1e-04
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	1e-04
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-04
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-04
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-04
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	2e-04
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	2e-04
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-04
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	3e-04
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	3e-04
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	3e-04
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	3e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	3e-04
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	4e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	5e-04
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	5e-04
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-04
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	6e-04
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	7e-04
TIGR04290	226	TIGR04290, meth_Rta_06860, methyltransferase, Rta_	8e-04
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	0.001
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	0.002
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	0.002
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	0.002
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	0.003
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	0.003
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	0.003
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	0.003

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score =  118 bits (298), Expect = 6e-35
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 4   KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG 63
           K+LE +L  L+ F NPK+ LEQY T   +A+ +L+ A    GD+  K V D G G G L 
Sbjct: 2   KELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILA 60

Query: 64  AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
             A LLGA +V+A+DID ++LE+A  NA +L  D++FV  D+ 
Sbjct: 61  IGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103

Length = 198

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 58.6 bits (143), Expect = 1e-11
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQ 102
            +  K V D GCG G L  AA  LGA +V+A+DID  ++E A ENA    +EL++   Q
Sbjct: 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175

Length = 250

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 51.2 bits (123), Expect = 9e-10
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           + D GCG G +  A    G   V  +DI  ++LELA E   D    + FV  D R+L
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDL 57

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 28  TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
           TG H  + +         D+ +K V D GCG G L  AA  LGA +V+ IDID  ++E A
Sbjct: 140 TGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESA 198

Query: 88  SENA 91
            +NA
Sbjct: 199 RKNA 202

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 28  TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
           TG H  + +   A         K V D GCG G L  AA  LGA +V+ +DID  ++E A
Sbjct: 143 TGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAA 201

Query: 88  SENAA 92
            ENA 
Sbjct: 202 RENAR 206

Length = 300

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 49.4 bits (118), Expect = 6e-09
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEW 110
           V D GCG G L  A       +V  +DI   +LELA + AA L  D ++ ++ D   L  
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 49  NKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCD 104
              V D G G G +  A A      +V A+DI  ++L +A +NAA L LD ++F+Q D
Sbjct: 88  PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVEFLQSD 145

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 39  TAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAAD-LEL 96
            A  +        V D G G G +  A A      +V A+DI  ++L +A  NA   L  
Sbjct: 99  WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA 158

Query: 97  DIDFVQCD 104
            ++F+Q D
Sbjct: 159 RVEFLQGD 166

Length = 275

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 48  SNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAA-DLELDIDFVQCDI 105
               V D GCG G+L      L    +V  +D+  + LELA ENA   L   I FVQ D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 106 RN 107
            +
Sbjct: 61  PD 62

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92
           V D GCG G L  AA  LGA +V+ +DID  ++  A ENA 
Sbjct: 164 VLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAE 204

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 47.8 bits (114), Expect = 5e-08
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCD 104
           S   V D GCG G L    A  LG   +V+ IDI  +++E A ENA  L  + ++F+Q D
Sbjct: 3   SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGD 62

Query: 105 IRNLEWR 111
           I  L   
Sbjct: 63  IEELPQL 69

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 50  KVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCD 104
           K + D G G G +  A A      +VIA+DI  D+L LA ENA    L  +  VQ D
Sbjct: 112 KRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSD 168

Length = 280

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVI-AIDIDSDSLELASENAADLELD-IDFVQCDI 105
              V D GCG G LGAA      D  +  +DI++ +LE A  N A   L+  +    D+
Sbjct: 32  GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDL 90

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASEN--AADLELDIDFVQCDIRNL 108
           V D G G G    AA   G D +V+ +++D ++  LA      A L   +  V  D R L
Sbjct: 4   VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63

Query: 109 EW 110
             
Sbjct: 64  LE 65

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           V D GCG G LG          ++  +D+++ ++E A +N A   ++   V         
Sbjct: 162 VLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221

Query: 111 RGKY 114
            GK+
Sbjct: 222 EGKF 225

Length = 300

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASEN--AADLELDIDFVQCD 104
               + D G G G LG   A      +++ ++I  ++ E+A  N     LE  I  ++ D
Sbjct: 44  KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD 103

Query: 105 IRNL 108
           I+  
Sbjct: 104 IKEF 107

Length = 248

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 45  GDVSNKVVADFGCG-CGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           GDVS K V   GCG  G +  A A   GA  VIA D +   LELA +  AD+ ++  
Sbjct: 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR 216

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 40  AENSF------GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93
           AE+SF       D     V + G G G +   A   G   V+ +DI+  ++E A  NA  
Sbjct: 9   AEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKK-VVGVDINPYAVECAKCNAKL 67

Query: 94  LEL---DIDFVQCD 104
             +    ++ ++ D
Sbjct: 68  NNIRNNGVEVIRSD 81

Length = 188

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
            G G LG    AAA L GA +VI ID   + LELA E  AD  +DID
Sbjct: 184 QGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDID 230

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD 97
             + D G G G++     L G + +VIAI+ D ++LEL   NAA   +D
Sbjct: 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD 84

Length = 187

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
           D+    V D GCG G L      LGA  V  ID     +E+A  +A +  ++ID+ Q  +
Sbjct: 57  DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATV 115

Query: 106 RNLE 109
            +L 
Sbjct: 116 EDLA 119

Length = 243

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 37  LYTAENSFGDVSNKVVADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE 89
           + TA+   GD     VA FG G   L A   A   GA ++IA+DI+ + LELA +
Sbjct: 178 VNTAKVEPGDT----VAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228

Length = 366

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 32  IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASEN 90
           +A ++  TA         + V D  CG GT G   A      +V  ++I  +++E A EN
Sbjct: 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQEN 334

Query: 91  AADLELDIDFVQCD 104
           AA   +D       
Sbjct: 335 AAANGIDNVEFIAG 348

Length = 432

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 51  VVADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            VA +GCG   L AA  A LLGA++VIAID   + LE+A  +    E  I+F + D
Sbjct: 187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH-LGAET-INFEEVD 240

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 35  RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94
           R+ Y  E++ G +  K V D GCG G L  +   LGAD V  ID   +++E+A  +A + 
Sbjct: 36  RLNYIREHA-GGLFGKRVLDVGCGGGILSESMARLGAD-VTGIDASEENIEVARLHALES 93

Query: 95  ELDIDFVQCDIRNL--EWRGKY 114
            L ID+ Q     L  E  G++
Sbjct: 94  GLKIDYRQTTAEELAAEHPGQF 115

Length = 233

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 57  CGCGTLGA----AATLLGADQVIAIDIDSDSLELASENAADLELD 97
            G GT+G        +LGA +VIA+DID + L +A E  AD  ++
Sbjct: 166 IGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTIN 210

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 38.0 bits (89), Expect = 9e-05
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 54  DFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           D GCG G L  A    G  +V  +D+  + L LA +          FV  D  +L
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----APRKFVVGDAEDL 51

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 51  VVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAAD 93
           VV D  CG G +GAA A  L   ++ A DID  ++  A  N AD
Sbjct: 89  VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD 132

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107
           G G +G    A A LLGA ++IA+D + + L+LA E  A     I+    DI  
Sbjct: 175 GAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDI--INPKNGDIVE 226

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 17/94 (18%)

Query: 20  KVELEQYPTGPHIASRMLYTAENS---FGDVSNKVVADFGCG----CGTLGAAATLLGAD 72
            +  EQ    P + S   + AE +    GD     VA FG G        GA   L GA 
Sbjct: 139 GLTDEQAVMLPDMMSTGFHGAELANIKLGDT----VAVFGIGPVGLMAVAGAR--LRGAG 192

Query: 73  QVIAIDIDSDSLELASENAADLELDI-DFVQCDI 105
           ++IA+    + +ELA E  A    DI D+   D+
Sbjct: 193 RIIAVGSRPNRVELAKEYGAT---DIVDYKNGDV 223

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 5/40 (12%)

Query: 58  GCGTLGAAATL----LGADQVIAIDIDSDSLELASENAAD 93
           GCG +G +A +    LGA +VIA+DID D LELA E  A 
Sbjct: 173 GCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAV 211

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 23  LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG----AAATLLGADQVIAID 78
           +E      H   R    A   F DV   V+A    G G LG     AA L    ++I +D
Sbjct: 157 IEPLACALHAVDR----ANIKFDDVV--VLA----GAGPLGLGMIGAARLKNPKKLIVLD 206

Query: 79  IDSDSLELASENAADLELDI 98
           +  + L LA +  AD+ L+ 
Sbjct: 207 LKDERLALARKFGADVVLNP 226

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASE 89
           G G +G    A A LLGA  VI +D   + LELA E
Sbjct: 176 GAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211

Length = 350

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
           V  K V D G G G +  AA   GA +V+A DID    +    NAA   + I F   D+
Sbjct: 78  VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL 136

Length = 218

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELA 87
           P +A  M+  A    GD     + D  CG GT+   A L+GA+   +   DID   ++ A
Sbjct: 14  PTLARAMVNLAGWKPGDP----LLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGA 69

Query: 88  SENA--ADLELDIDFVQCDIRNLE 109
             NA  A +   I+FVQ D   L 
Sbjct: 70  RINAENAGVGDKIEFVQADAAKLP 93

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
            G G +G    A A   GA +V+  DID   LE A E  A   +++ 
Sbjct: 169 FGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVR 215

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 39  TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-DLELD 97
           T   +   +    V D GCG G L      LGA  V  ID   +++E+A  +A  D  L 
Sbjct: 36  TIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK 94

Query: 98  IDFVQCDIRNLEWRGK 113
           I++    + +L  +G 
Sbjct: 95  IEYRCTSVEDLAEKGA 110

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQ 102
           GD++   + D GCG G+L       GA +V+A DI    +E A E A +  L   I F  
Sbjct: 60  GDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEV 118

Query: 103 CDIRNLEWRGKY 114
            D+ +L   G++
Sbjct: 119 GDLESL--LGRF 128

Length = 230

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELD 97
           G G LG      A  +GA  VIA+DI  + LELA E  AD  L+
Sbjct: 173 GLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLN 215

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD-IRNLEW 110
           V D   G G L  AA   GA  V A+DI   ++  A  NA    +D+D  + D  R +E+
Sbjct: 40  VLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEF 99

Query: 111 R 111
           R
Sbjct: 100 R 100

Length = 223

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 49 NKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELD 97
            V+ D G G G++   AA L+   +V AI+ + ++L+L   N     + 
Sbjct: 20 GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVS 69

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 52  VADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D GCG G      A  +G + +V+ ID     L LA E AA L  +++FV+ D   L 
Sbjct: 23  VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82

Query: 110 WRGKYI 115
           +     
Sbjct: 83  FPDGSF 88

Length = 241

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 54  DFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELD----IDFVQCDIRNL 108
           D GCG GTL  A    L   +   +DI   +LE A+E  A L L     +     D  +L
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDL 61

Query: 109 E 109
           +
Sbjct: 62  D 62

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 52  VADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106
           V D    CGT G  A LL    G  +V+ +DI    LE+A E      + +++FV  D  
Sbjct: 55  VLD--VACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE 111

Query: 107 NLEWRGKYI 115
           NL +     
Sbjct: 112 NLPFPDNSF 120

Length = 238

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  VADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE 89
           +A FG G   L A  AA + G   +IA+DI    LELA E
Sbjct: 190 IAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 60  GTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELD-IDFVQCD----IRNLEWRG 112
           G     A L GA +V ++D+   +LE A ENA    L+ D   F+  D    +R  E RG
Sbjct: 229 GGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRG 288

Query: 113 K 113
           +
Sbjct: 289 E 289

Length = 393

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
           VA FG G   L     A   GA ++I IDI+ D  ELA +       N  D +  I
Sbjct: 190 VAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPI 245

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
           D+S   V D GC  G         GA +V+ ID D   L  A   A  L  DI+F Q  +
Sbjct: 47  DLSGWSVLDIGCNAGFYSIEMKRRGAGRVLGIDSDPRYLAQARFAAEVLGADIEFRQMSV 106

Query: 106 RNLE-WRGKY 114
            +L     ++
Sbjct: 107 YDLGRLGERF 116

Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 51  VVADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
             A FG G   L         GA ++IA+DI+ D  E A +       N  D +  I
Sbjct: 186 TCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPI 242

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 58  GCGTLGA-----AATLLGADQVIAIDIDSDSLELASENAADL 94
           G G LG      A  +  A +VIA+DI+ D L LA E  ADL
Sbjct: 170 GAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADL 210

Length = 338

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 52  VADFGCGCGTLGAA---ATLLGADQVIAIDIDSDSLELASENAA 92
           VA  GCG G   AA   A L GA ++IA+DID   LE A E  A
Sbjct: 180 VAVIGCG-GVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA--ADLELDIDFVQ 102
             +  K V D GCG G L       GA  V A+DI    +++A   A   D+  +++F  
Sbjct: 52  DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV 110

Query: 103 CDIRNLEWRGKY 114
            D+ +L   G++
Sbjct: 111 NDLLSLC--GEF 120

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
           G G +G      A   GA +VI +DID + LE A E  AD
Sbjct: 167 GAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGAD 205

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 52  VADFGCG----CGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92
           VA  G G       LGA A   GA QV+A+D++ D L LA E  A
Sbjct: 195 VAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGA 237

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 54  DFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105
           D G G G +  A      + +VIA+DI  D+L +A ENA   +L   ++F+Q ++
Sbjct: 120 DLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 40  AENSFGDVSNKVVADFGCGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLE 95
           A +  GD+  K V  F  G G +G    AA   LGA +++  D+   SL LA E  AD  
Sbjct: 161 AAHQAGDLQGKRV--FVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL 218

Query: 96  LD 97
           ++
Sbjct: 219 VN 220

Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.84
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.81
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.8
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.74
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.71
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.71
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.68
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.66
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.65
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.64
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.63
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.63
PRK11207	197	tellurite resistance protein TehB; Provisional	99.62
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.62
PLN02244	340	tocopherol O-methyltransferase	99.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.57
PRK05785	226	hypothetical protein; Provisional	99.57
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.56
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.56
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.55
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.55
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.54
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.54
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.54
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.53
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.53
PRK12335	287	tellurite resistance protein TehB; Provisional	99.53
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.53
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.53
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.52
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.52
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.52
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.52
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.51
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.51
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.51
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.51
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.51
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.51
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.5
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.5
PLN02490	340	MPBQ/MSBQ methyltransferase	99.5
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.5
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.49
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.49
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.49
PRK07402	196	precorrin-6B methylase; Provisional	99.49
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.49
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.49
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.48
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.48
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.47
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.47
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
PLN02336	475	phosphoethanolamine N-methyltransferase	99.46
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.46
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.46
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.45
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.45
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.44
PRK14967	223	putative methyltransferase; Provisional	99.44
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.44
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.44
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.43
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.43
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.43
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.42
COG4123	248	Predicted O-methyltransferase [General function pr	99.42
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.42
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.42
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.41
KOG1271	227	consensus Methyltransferases [General function pre	99.41
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.41
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.4
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.4
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.39
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.39
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.38
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.38
TIGR03438	301	probable methyltransferase. This model represents	99.38
PHA03412	241	putative methyltransferase; Provisional	99.38
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.38
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.38
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.38
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.37
PRK08317	241	hypothetical protein; Provisional	99.37
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.36
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.36
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.35
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.35
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.35
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	99.35
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.35
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.35
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.35
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.35
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.35
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.35
PRK04266	226	fibrillarin; Provisional	99.34
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.34
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.33
PHA03411	279	putative methyltransferase; Provisional	99.33
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.32
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.32
PRK06922	677	hypothetical protein; Provisional	99.32
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.3
KOG2904	328	consensus Predicted methyltransferase [General fun	99.3
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.29
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	99.29
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.28
PRK14968	188	putative methyltransferase; Provisional	99.28
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.28
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.27
PRK06202	232	hypothetical protein; Provisional	99.27
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.25
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.24
PLN02336	475	phosphoethanolamine N-methyltransferase	99.24
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.24
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.23
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.23
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.23
PRK04148	134	hypothetical protein; Provisional	99.23
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.2
PLN02672	1082	methionine S-methyltransferase	99.2
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.2
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.2
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.2
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.2
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.19
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.19
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.18
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.18
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.18
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.17
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.16
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.16
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.15
PLN03075	296	nicotianamine synthase; Provisional	99.15
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.15
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.14
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.11
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.09
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.08
PRK04457	262	spermidine synthase; Provisional	99.08
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.06
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	99.06
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.05
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.04
KOG4300	252	consensus Predicted methyltransferase [General fun	99.03
PRK00811	283	spermidine synthase; Provisional	99.03
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.01
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.01
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.01
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.01
PLN02476	278	O-methyltransferase	99.01
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.0
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.0
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.99
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.98
PTZ00146	293	fibrillarin; Provisional	98.97
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.96
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.96
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.96
KOG2730	263	consensus Methylase [General function prediction o	98.94
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.92
TIGR00438	188	rrmJ cell division protein FtsJ.	98.92
COG4122	219	Predicted O-methyltransferase [General function pr	98.91
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.91
COG2520	341	Predicted methyltransferase [General function pred	98.89
PF13679	141	Methyltransf_32: Methyltransferase domain	98.89
COG4076	252	Predicted RNA methylase [General function predicti	98.88
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.88
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.85
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.85
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.85
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.84
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.83
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.83
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.82
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.82
PLN02366	308	spermidine synthase	98.81
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.79
PRK03612	521	spermidine synthase; Provisional	98.77
PRK01581	374	speE spermidine synthase; Validated	98.73
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.72
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.72
KOG2361	264	consensus Predicted methyltransferase [General fun	98.71
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.71
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.67
KOG3010	261	consensus Methyltransferase [General function pred	98.65
KOG2899	288	consensus Predicted methyltransferase [General fun	98.62
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.6
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.6
COG3897	218	Predicted methyltransferase [General function pred	98.56
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.56
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.55
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.48
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.46
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.46
PRK11524	284	putative methyltransferase; Provisional	98.42
PLN02823	336	spermine synthase	98.42
KOG4058	199	consensus Uncharacterized conserved protein [Funct	98.4
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	98.37
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.35
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.34
PHA01634	156	hypothetical protein	98.34
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.32
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.31
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.31
PRK13699	227	putative methylase; Provisional	98.26
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.25
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.24
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.23
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.22
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.16
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.14
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	98.14
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.13
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.12
COG2521	287	Predicted archaeal methyltransferase [General func	98.12
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.1
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.09
KOG1501	636	consensus Arginine N-methyltransferase [General fu	98.08
PRK10742	250	putative methyltransferase; Provisional	98.08
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.04
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.04
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.03
KOG2940	325	consensus Predicted methyltransferase [General fun	97.98
KOG3115	249	consensus Methyltransferase-like protein [General	97.98
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.96
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.95
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.85
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.77
PRK00536	262	speE spermidine synthase; Provisional	97.77
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.74
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.74
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	97.73
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.73
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.57
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.55
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.53
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.49
KOG1227	351	consensus Putative methyltransferase [General func	97.47
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	97.41
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.37
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.31
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.31
COG0286	489	HsdM Type I restriction-modification system methyl	97.29
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.29
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.26
PRK10458	467	DNA cytosine methylase; Provisional	97.25
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.24
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.23
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.18
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.14
KOG2078	495	consensus tRNA modification enzyme [RNA processing	97.14
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.06
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.04
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.04
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.04
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.03
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.01
KOG2920	282	consensus Predicted methyltransferase [General fun	96.94
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.94
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.87
KOG2360	413	consensus Proliferation-associated nucleolar prote	96.87
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	96.86
COG0863	302	DNA modification methylase [DNA replication, recom	96.85
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.83
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.79
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.78
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.73
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.72
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	96.59
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.46
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.46
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.45
KOG1331	293	consensus Predicted methyltransferase [General fun	96.43
COG1565	370	Uncharacterized conserved protein [Function unknow	96.42
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	96.41
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.2
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.1
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.93
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	95.68
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	95.58
COG1568	354	Predicted methyltransferases [General function pre	95.56
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.48
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.42
KOG3924	419	consensus Putative protein methyltransferase invol	95.38
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.2
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.13
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.11
COG4301	321	Uncharacterized conserved protein [Function unknow	94.93
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.82
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.8
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.8
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.72
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.61
PRK07904	253	short chain dehydrogenase; Provisional	94.45
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.4
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.38
PRK05867	253	short chain dehydrogenase; Provisional	94.16
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.11
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.91
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.81
PRK07677	252	short chain dehydrogenase; Provisional	93.75
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.75
PRK06172	253	short chain dehydrogenase; Provisional	93.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.69
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.62
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	93.61
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	93.54
PRK08339	263	short chain dehydrogenase; Provisional	93.53
PRK07063	260	short chain dehydrogenase; Provisional	93.52
PRK07035	252	short chain dehydrogenase; Provisional	93.49
PRK07097	265	gluconate 5-dehydrogenase; Provisional	93.48
PRK07890	258	short chain dehydrogenase; Provisional	93.46
PRK05876	275	short chain dehydrogenase; Provisional	93.34
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.22
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.19
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.19
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.18
PRK06194	287	hypothetical protein; Provisional	93.08
PTZ00357	1072	methyltransferase; Provisional	93.07
KOG2811	420	consensus Uncharacterized conserved protein [Funct	92.98
KOG2912	419	consensus Predicted DNA methylase [Function unknow	92.97
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	92.95
PRK05866	293	short chain dehydrogenase; Provisional	92.93
PRK08862	227	short chain dehydrogenase; Provisional	92.86
PRK07478	254	short chain dehydrogenase; Provisional	92.79
PRK07109	334	short chain dehydrogenase; Provisional	92.72
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.65
PRK07454	241	short chain dehydrogenase; Provisional	92.62
PRK08589	272	short chain dehydrogenase; Validated	92.54
PRK06139	330	short chain dehydrogenase; Provisional	92.31
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.18
PRK07814	263	short chain dehydrogenase; Provisional	92.02
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.93
PRK08213	259	gluconate 5-dehydrogenase; Provisional	91.92
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	91.85
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.77
PRK08643	256	acetoin reductase; Validated	91.76
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.66
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.62
PRK09072	263	short chain dehydrogenase; Provisional	91.61
PRK07062	265	short chain dehydrogenase; Provisional	91.6
PRK07326	237	short chain dehydrogenase; Provisional	91.55
PRK08303	305	short chain dehydrogenase; Provisional	91.47
PRK09242	257	tropinone reductase; Provisional	91.46
PRK06125	259	short chain dehydrogenase; Provisional	91.43
PLN02740	381	Alcohol dehydrogenase-like	91.39
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.36
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	91.3
PRK07102	243	short chain dehydrogenase; Provisional	91.28
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.18
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	91.17
PRK05650	270	short chain dehydrogenase; Provisional	91.13
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.13
PRK07024	257	short chain dehydrogenase; Provisional	91.1
PRK06949	258	short chain dehydrogenase; Provisional	91.08
PRK05854	313	short chain dehydrogenase; Provisional	91.05
PRK12939	250	short chain dehydrogenase; Provisional	91.04
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.03
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.02
PRK07791	286	short chain dehydrogenase; Provisional	90.93
PRK07576	264	short chain dehydrogenase; Provisional	90.88
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	90.86
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	90.78
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	90.75
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	90.57
KOG2782	303	consensus Putative SAM dependent methyltransferase	90.47
PRK10669	558	putative cation:proton antiport protein; Provision	90.43
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.36
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.29
PRK08267	260	short chain dehydrogenase; Provisional	90.27
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.24
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	90.22
PRK09496	453	trkA potassium transporter peripheral membrane com	90.13
PRK08340	259	glucose-1-dehydrogenase; Provisional	90.0
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.97
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.72
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.72
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	89.68
PRK08085	254	gluconate 5-dehydrogenase; Provisional	89.67
PRK06181	263	short chain dehydrogenase; Provisional	89.34
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	89.13
PRK09291	257	short chain dehydrogenase; Provisional	89.05
TIGR00497	501	hsdM type I restriction system adenine methylase (	89.04
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.97
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.93
PRK07453	322	protochlorophyllide oxidoreductase; Validated	88.82
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	88.61
PLN02780	320	ketoreductase/ oxidoreductase	88.6
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	88.56
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	88.54
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.54
PRK06701	290	short chain dehydrogenase; Provisional	88.44
PRK12829	264	short chain dehydrogenase; Provisional	88.43
PRK06197	306	short chain dehydrogenase; Provisional	88.13
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.03
PRK08251	248	short chain dehydrogenase; Provisional	87.79
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	87.77
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	87.68
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	87.64
PRK08703	239	short chain dehydrogenase; Provisional	87.63
COG1255	129	Uncharacterized protein conserved in archaea [Func	87.63
PRK08265	261	short chain dehydrogenase; Provisional	87.61
PRK05855	582	short chain dehydrogenase; Validated	87.58
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.55
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	87.54
PRK06720	169	hypothetical protein; Provisional	87.41
PRK07201	657	short chain dehydrogenase; Provisional	87.28
PLN02827	378	Alcohol dehydrogenase-like	87.22
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	87.17
PF07101	124	DUF1363: Protein of unknown function (DUF1363); In	87.12
TIGR02415	254	23BDH acetoin reductases. One member of this famil	87.08
PRK12548	289	shikimate 5-dehydrogenase; Provisional	87.0
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	86.7
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	86.68
PRK06138	252	short chain dehydrogenase; Provisional	86.58
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	86.56
COG0338	274	Dam Site-specific DNA methylase [DNA replication,	86.42
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	86.28
PRK06914	280	short chain dehydrogenase; Provisional	86.15
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	86.15
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	86.11
PLN02253	280	xanthoxin dehydrogenase	86.08
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	85.68
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.63
PRK08628	258	short chain dehydrogenase; Provisional	85.57
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	85.38
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	85.28
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	85.25
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	85.17
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	85.16
PRK05872	296	short chain dehydrogenase; Provisional	85.02
PRK07774	250	short chain dehydrogenase; Provisional	84.78
COG4017	254	Uncharacterized protein conserved in archaea [Func	84.68
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	84.63
PRK06153	393	hypothetical protein; Provisional	84.48
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	84.4
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	84.39
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	84.37
PRK08278	273	short chain dehydrogenase; Provisional	84.35
PRK06198	260	short chain dehydrogenase; Provisional	84.15
PRK05599	246	hypothetical protein; Provisional	84.13
PRK09496	453	trkA potassium transporter peripheral membrane com	83.94
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	83.89
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	83.87
PRK07831	262	short chain dehydrogenase; Provisional	83.76
PRK07775	274	short chain dehydrogenase; Provisional	83.71
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	83.6
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	83.54
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	83.51
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	83.48
PRK06940	275	short chain dehydrogenase; Provisional	83.43
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	83.38
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	83.13
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	83.11
PRK05717	255	oxidoreductase; Validated	83.09
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	83.04
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	82.86
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	82.77
PRK06196	315	oxidoreductase; Provisional	82.76
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	82.74
PRK09186	256	flagellin modification protein A; Provisional	82.4
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	82.31
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	82.29
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	82.22
COG2933	358	Predicted SAM-dependent methyltransferase [General	82.05
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	81.93
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	81.86
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	81.74
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	81.59
PRK07067	257	sorbitol dehydrogenase; Provisional	81.58
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	81.57
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	81.53
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	81.33
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.22
PRK06180	277	short chain dehydrogenase; Provisional	80.91
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	80.68
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	80.66
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	80.65
PRK08324	681	short chain dehydrogenase; Validated	80.52
PLN02494	477	adenosylhomocysteinase	80.46
PRK07806	248	short chain dehydrogenase; Provisional	80.05
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	80.02

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=9.3e-20  Score=109.10  Aligned_cols=108  Identities=43%  Similarity=0.672  Sum_probs=96.5

Q ss_pred             cchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh
Q 033605            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD   82 (115)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~   82 (115)
                      ++.++..++.+..|.++...++||.++...+..++..+. ......+.+|+|+|||||.+++..+-.++..|+|+|++++
T Consensus         1 kk~Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~   79 (198)
T COG2263           1 KKELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE   79 (198)
T ss_pred             CchhhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence            467888899999999999999999999999999887776 3356688899999999999999999899899999999999


Q ss_pred             HHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           83 SLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        83 ~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      +++.+++|..+...++.++..|+.++..+
T Consensus        80 a~ei~r~N~~~l~g~v~f~~~dv~~~~~~  108 (198)
T COG2263          80 ALEIARANAEELLGDVEFVVADVSDFRGK  108 (198)
T ss_pred             HHHHHHHHHHhhCCceEEEEcchhhcCCc
Confidence            99999999998666999999999887643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=6.7e-20  Score=105.43  Aligned_cols=112  Identities=48%  Similarity=0.903  Sum_probs=103.8

Q ss_pred             CccchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCC
Q 033605            1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID   80 (115)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s   80 (115)
                      |+.+.+++.++....|.++...+++|+++++.+..++.-+-+.+....+++++|+|||.|.++...+..+...|+|+||+
T Consensus         1 m~~Kel~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId   80 (185)
T KOG3420|consen    1 MRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID   80 (185)
T ss_pred             CchHHHHHHHHHhccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC
Confidence            78888999999999999999999999999999999999999998888999999999999999988877777799999999


Q ss_pred             hhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           81 SDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        81 ~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      |++++.+..|+.+..++++++++|+.++.+..
T Consensus        81 peALEIf~rNaeEfEvqidlLqcdildle~~~  112 (185)
T KOG3420|consen   81 PEALEIFTRNAEEFEVQIDLLQCDILDLELKG  112 (185)
T ss_pred             HHHHHHHhhchHHhhhhhheeeeeccchhccC
Confidence            99999999999999889999999998877654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.80  E-value=3.1e-19  Score=111.69  Aligned_cols=107  Identities=19%  Similarity=0.318  Sum_probs=82.3

Q ss_pred             hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhH
Q 033605            5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDS   83 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~   83 (115)
                      .++...++....++.....-.+..+..|...++..+.    ..++.+|||+|||||..+..+++ .+..+|+|+|+|+.|
T Consensus        12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~----~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M   87 (238)
T COG2226          12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG----IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM   87 (238)
T ss_pred             HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC----CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH
Confidence            4444455544444444444455666666666665543    33889999999999999999996 456799999999999


Q ss_pred             HHHHHHHhhccCC-ceeEEEccccCCcccCCCC
Q 033605           84 LELASENAADLEL-DIDFVQCDIRNLEWRGKYI  115 (115)
Q Consensus        84 ~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f~  115 (115)
                      ++.++++....+. +++++++|++++||++..|
T Consensus        88 L~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF  120 (238)
T COG2226          88 LEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF  120 (238)
T ss_pred             HHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence            9999999998776 7999999999999999655

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.74  E-value=1.4e-17  Score=104.71  Aligned_cols=104  Identities=20%  Similarity=0.340  Sum_probs=53.7

Q ss_pred             hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChh
Q 033605            5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSD   82 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~   82 (115)
                      .++...+.+...++.....-.+..+..+....++.+    ...++.+|||+|||+|.++..+++. + ..+|+|+|+|+.
T Consensus         8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~   83 (233)
T PF01209_consen    8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG   83 (233)
T ss_dssp             -----------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred             HHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence            444455555444443333334444555555555433    3447889999999999999999864 3 369999999999


Q ss_pred             HHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           83 SLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        83 ~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      |++.++++....+. +++++++|++++|+++
T Consensus        84 ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d  114 (233)
T PF01209_consen   84 MLEVARKKLKREGLQNIEFVQGDAEDLPFPD  114 (233)
T ss_dssp             HHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred             HHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence            99999999988766 9999999999999986

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00452 methyltransferase, putative

Probab=99.71  E-value=2.2e-16  Score=102.90  Aligned_cols=111  Identities=15%  Similarity=0.080  Sum_probs=88.2

Q ss_pred             cchhhhhhhhcccCCCCccccccCCCchhhHHHHH-HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh
Q 033605            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRML-YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (115)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~   81 (115)
                      +++++..++.+..|.++...+++|.++.++...+. ..++..+...++++|||+|||+|.++..++..+...|+|+|+|+
T Consensus        75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~  154 (314)
T TIGR00452        75 IKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV  154 (314)
T ss_pred             HHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence            45788888999999999999999999998877765 44666666678899999999999999998877766899999999


Q ss_pred             hHHHHHHHHhhc--cCCceeEEEccccCCcccCC
Q 033605           82 DSLELASENAAD--LELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        82 ~~~~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~  113 (115)
                      .|+..++.....  ...++.+..+++++++..+.
T Consensus       155 ~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~  188 (314)
T TIGR00452       155 LFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA  188 (314)
T ss_pred             HHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence            999775443222  12268888899888876544

Known examples to date are restricted to the proteobacteria.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.71  E-value=1.2e-16  Score=90.05  Aligned_cols=66  Identities=35%  Similarity=0.536  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc-cCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~-~~~~~~~~  113 (115)
                      ++.+|||+|||+|.++..+++ .+..+|+|+|+|+.+++.++++....+.  +++++++|+ ...+..++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEP   70 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCC
Confidence            467999999999999999997 5677999999999999999999954443  999999999 55555443

...

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.68  E-value=4.8e-16  Score=94.51  Aligned_cols=95  Identities=17%  Similarity=0.281  Sum_probs=68.6

Q ss_pred             CccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-
Q 033605           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-   96 (115)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-   96 (115)
                      +..+..+..++.....+.+...+......++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.++++....+. 
T Consensus        13 ~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~   92 (181)
T TIGR00138        13 KRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN   92 (181)
T ss_pred             hcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence            455555555544443333322222223335889999999999999998854 346899999999999999999888776 


Q ss_pred             ceeEEEccccCCcccCC
Q 033605           97 DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        97 ~v~~~~~d~~~~~~~~~  113 (115)
                      +++++++|+++++..+.
T Consensus        93 ~i~~i~~d~~~~~~~~~  109 (181)
T TIGR00138        93 NVEIVNGRAEDFQHEEQ  109 (181)
T ss_pred             CeEEEecchhhccccCC
Confidence            79999999988754433

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.66  E-value=1.3e-15  Score=90.24  Aligned_cols=62  Identities=39%  Similarity=0.668  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH-hc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAAT-LL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~-~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|.++..++ +. +..+++|+|+|+.|++.|++++...+. ++++.++|+++++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~   67 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP   67 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc
Confidence            67899999999999999999 43 457999999999999999999888877 8999999999977

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.65  E-value=2.7e-15  Score=91.59  Aligned_cols=64  Identities=22%  Similarity=0.294  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      ++.+|||+|||+|..+..++. .+..+|+++|+++.|++.++++....+. +++++++|+++++..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~  110 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQE  110 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCC
Confidence            478999999999999999885 4567999999999999999999988887 799999999887763

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.64  E-value=3.9e-15  Score=97.69  Aligned_cols=110  Identities=18%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             hhhhhhhhcccCCCCccccccCCCchhhHH-HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhH
Q 033605            5 QLESVLGDLEQFSNPKVELEQYPTGPHIAS-RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS   83 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~   83 (115)
                      .++.....+..|.........+....++.. ...+.+...++..++.+|||+|||+|.++..++..+...|+|+|+|+.+
T Consensus        78 ~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~  157 (322)
T PRK15068         78 RIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLF  157 (322)
T ss_pred             HHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHH
Confidence            455555666666666555555555544433 3344555666656788999999999999999998777689999999999


Q ss_pred             HHHHHHHhhcc--CCceeEEEccccCCcccCCC
Q 033605           84 LELASENAADL--ELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        84 ~~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~f  114 (115)
                      +..++......  ..++.++.+|++++|+++.|
T Consensus       158 l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F  190 (322)
T PRK15068        158 LCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF  190 (322)
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence            97665443322  23799999999999875443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.63  E-value=1.3e-15  Score=93.62  Aligned_cols=73  Identities=22%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      +.+.+...++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....+.++.+...|+...++++.
T Consensus        22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~   94 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNED   94 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCC
Confidence            33344445678999999999999999998754 99999999999999999887766677888888876665543

Part of a tellurite-reducing operon tehA and tehB

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=7e-15  Score=93.89  Aligned_cols=82  Identities=21%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      -.+.....++.+.+.+...++++|||||||+|.+++.+++.-..+|+|+++|+++.+.+++++.+.++  +++++..|..
T Consensus        53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r  132 (283)
T COG2230          53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR  132 (283)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc
Confidence            34556667888889989999999999999999999999975456999999999999999999999888  7999999988


Q ss_pred             CCcc
Q 033605          107 NLEW  110 (115)
Q Consensus       107 ~~~~  110 (115)
                      +++-
T Consensus       133 d~~e  136 (283)
T COG2230         133 DFEE  136 (283)
T ss_pred             cccc
Confidence            7653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.62  E-value=5.3e-15  Score=91.12  Aligned_cols=69  Identities=26%  Similarity=0.336  Sum_probs=58.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f  114 (115)
                      ...++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....+. ++++...|+.++++++.|
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            344678999999999999999998754 999999999999999998887776 689999999888776543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.62  E-value=3.3e-15  Score=91.01  Aligned_cols=72  Identities=25%  Similarity=0.352  Sum_probs=58.3

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      +..+..++.++||+|||.|+.++++++.|. .|+++|+|+..++.+++.+...+++++..+.|+.+.+++..|
T Consensus        24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   24 EAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            334556788999999999999999999977 899999999999999998888888999999999988887653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02244 tocopherol O-methyltransferase

Probab=99.61  E-value=1.4e-14  Score=95.73  Aligned_cols=80  Identities=23%  Similarity=0.218  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhcCC-----CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           33 ASRMLYTAENSFGD-----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        33 ~~~~~~~~~~~~~~-----~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      ..++++.++.....     .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+.  +++++++|+
T Consensus        98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~  177 (340)
T PLN02244         98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA  177 (340)
T ss_pred             HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc
Confidence            44566667766654     56789999999999999999975355999999999999999998877665  799999999


Q ss_pred             cCCcccC
Q 033605          106 RNLEWRG  112 (115)
Q Consensus       106 ~~~~~~~  112 (115)
                      .++|+++
T Consensus       178 ~~~~~~~  184 (340)
T PLN02244        178 LNQPFED  184 (340)
T ss_pred             ccCCCCC
Confidence            9998875

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=9.2e-15  Score=91.92  Aligned_cols=74  Identities=16%  Similarity=0.303  Sum_probs=61.1

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      .++..+...++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.++++....+. +++++++|++++++++
T Consensus        36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  112 (231)
T TIGR02752        36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD  112 (231)
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence            3444445557789999999999999999864  346999999999999999999876665 8999999999888764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.57  E-value=2.4e-14  Score=91.94  Aligned_cols=81  Identities=25%  Similarity=0.281  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .....+.++.+.+.+...++.+|||+|||+|.++..+++...++|+|+.+|++..+.+++++...++  +++++.+|..+
T Consensus        44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~  123 (273)
T PF02353_consen   44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD  123 (273)
T ss_dssp             HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence            3456677888899988889999999999999999999975345999999999999999999999887  79999999987


Q ss_pred             Ccc
Q 033605          108 LEW  110 (115)
Q Consensus       108 ~~~  110 (115)
                      ++.
T Consensus       124 ~~~  126 (273)
T PF02353_consen  124 LPG  126 (273)
T ss_dssp             ---
T ss_pred             cCC
Confidence            664

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05785 hypothetical protein; Provisional

Probab=99.57  E-value=2.2e-14  Score=90.10  Aligned_cols=78  Identities=22%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      .....+....+..+.....  ++.+|||+|||+|.++..+++....+|+|+|+|++|++.+++..       .++++|++
T Consensus        32 g~~~~wr~~~~~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~  102 (226)
T PRK05785         32 NQDVRWRAELVKTILKYCG--RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFE  102 (226)
T ss_pred             CCcHHHHHHHHHHHHHhcC--CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechh
Confidence            3344455555555544322  46799999999999999998753359999999999999998642       46789999


Q ss_pred             CCcccCC
Q 033605          107 NLEWRGK  113 (115)
Q Consensus       107 ~~~~~~~  113 (115)
                      ++|+++.
T Consensus       103 ~lp~~d~  109 (226)
T PRK05785        103 ALPFRDK  109 (226)
T ss_pred             hCCCCCC
Confidence            9998764

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.56  E-value=3.2e-14  Score=91.57  Aligned_cols=76  Identities=21%  Similarity=0.300  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ..+.+.+++.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.|++.++++...  .+++++++|+.++++++
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSE  103 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHH
Confidence            34445555555556788999999999999999998755 999999999999999987643  37999999999988764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.56  E-value=3.7e-14  Score=92.91  Aligned_cols=64  Identities=22%  Similarity=0.365  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+++++++.|+.+....+.  +++++++|++++++++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~  196 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG  196 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc
Confidence            56799999999999999998764 4999999999999999987655443  7999999999988664

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.55  E-value=5.3e-14  Score=84.77  Aligned_cols=73  Identities=19%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      +.+++.+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+ +++++++|+.++++++
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~~-~v~ii~~D~~~~~~~~   75 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAAD-NLTVIHGDALKFDLPK   75 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccCC-CEEEEECchhcCCccc
Confidence            44555555567789999999999999999987 4599999999999999999886532 8999999999988765

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.55  E-value=1.2e-13  Score=88.47  Aligned_cols=71  Identities=23%  Similarity=0.359  Sum_probs=57.2

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhc---cC-CceeEEEccccCCcccCC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAAD---LE-LDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~---~~-~~v~~~~~d~~~~~~~~~  113 (115)
                      .....++.+|||+|||+|.++..+++. + ..+|+|+|+|++|++.|+++...   .. .+++++++|++++|+++.
T Consensus        68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~  144 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC  144 (261)
T ss_pred             HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence            334456789999999999999988864 3 35999999999999999877541   11 279999999999998863

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.54  E-value=9.3e-14  Score=88.81  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=66.5

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+.-....+++.+++.....++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+ +++++++|+.+
T Consensus         9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~-~v~ii~~D~~~   86 (258)
T PRK14896          9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAG-NVEIIEGDALK   86 (258)
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCC-CEEEEEecccc
Confidence            3344455556666666566678899999999999999999874 599999999999999998876522 89999999998


Q ss_pred             CcccC
Q 033605          108 LEWRG  112 (115)
Q Consensus       108 ~~~~~  112 (115)
                      +++++
T Consensus        87 ~~~~~   91 (258)
T PRK14896         87 VDLPE   91 (258)
T ss_pred             CCchh
Confidence            88764

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=2.8e-14  Score=91.02  Aligned_cols=82  Identities=22%  Similarity=0.300  Sum_probs=61.8

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d  104 (115)
                      |........+....++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+++.      +++++++|
T Consensus         7 y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d   80 (255)
T PRK14103          7 YLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGD   80 (255)
T ss_pred             HHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcC
Confidence            33333344445556666666667889999999999999999864 456999999999999999763      47889999


Q ss_pred             ccCCcccCC
Q 033605          105 IRNLEWRGK  113 (115)
Q Consensus       105 ~~~~~~~~~  113 (115)
                      +++++....
T Consensus        81 ~~~~~~~~~   89 (255)
T PRK14103         81 VRDWKPKPD   89 (255)
T ss_pred             hhhCCCCCC
Confidence            987753333

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.54  E-value=1.4e-13  Score=88.27  Aligned_cols=75  Identities=20%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.++..++++... ..++.++++|+.+.++++
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~  115 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPE  115 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCC
Confidence            455555666678889999999999999988864355999999999999999998764 237999999999888765

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.53  E-value=1.5e-14  Score=88.54  Aligned_cols=77  Identities=19%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      ...+=...++...+.....+|.|+|||+|..+..+++ .+.+.++|+|-|++|++.|+++..    +++|..+|+..+..
T Consensus        14 eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~p   89 (257)
T COG4106          14 ERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWKP   89 (257)
T ss_pred             hccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcCC
Confidence            3344455677777888889999999999999999995 678899999999999999988776    68999999998876


Q ss_pred             cC
Q 033605          111 RG  112 (115)
Q Consensus       111 ~~  112 (115)
                      +.
T Consensus        90 ~~   91 (257)
T COG4106          90 EQ   91 (257)
T ss_pred             CC
Confidence            54

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=5.2e-14  Score=89.87  Aligned_cols=76  Identities=22%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ......++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.++++..    ++.++.+|+..+..++
T Consensus        17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~~~   92 (258)
T PRK01683         17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQPPQ   92 (258)
T ss_pred             hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCCCC
Confidence            344555666666667889999999999999999864 45699999999999999998753    5788999988765443


Q ss_pred             C
Q 033605          113 K  113 (115)
Q Consensus       113 ~  113 (115)
                      .
T Consensus        93 ~   93 (258)
T PRK01683         93 A   93 (258)
T ss_pred             C
Confidence            3

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=9e-14  Score=90.11  Aligned_cols=67  Identities=34%  Similarity=0.437  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....+.++++...|+...++++.|
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~f  185 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEY  185 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCc
Confidence            3567999999999999999998754 999999999999999999888777889999998776665443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.53  E-value=1.2e-13  Score=88.07  Aligned_cols=72  Identities=22%  Similarity=0.327  Sum_probs=59.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .+..++..++ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+.  +++++++|+.+++
T Consensus        33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~  106 (255)
T PRK11036         33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA  106 (255)
T ss_pred             HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence            3445555544 4667999999999999999998754 999999999999999999887765  7899999987764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.53  E-value=2.2e-13  Score=86.58  Aligned_cols=66  Identities=21%  Similarity=0.346  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|..+..+++   .+..+++|+|+|+.|++.|+++....+.  +++++++|+.++++++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC
Confidence            3667999999999999988875   2457999999999999999999887655  7999999999888764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.52  E-value=1.1e-13  Score=86.62  Aligned_cols=78  Identities=18%  Similarity=0.272  Sum_probs=64.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CC------CeEEEEeCChhHHHHHHHHhhccCC----ceeEEEcccc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIR  106 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~------~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~  106 (115)
                      +..+..+...++.++||++||||.+++.++++ ..      .+|+++|++|+|++.++++..+.+.    .+.++++|++
T Consensus        90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE  169 (296)
T KOG1540|consen   90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE  169 (296)
T ss_pred             HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence            33445556667899999999999999999853 22      6999999999999999999976655    4899999999


Q ss_pred             CCcccCCCC
Q 033605          107 NLEWRGKYI  115 (115)
Q Consensus       107 ~~~~~~~f~  115 (115)
                      ++||++..|
T Consensus       170 ~LpFdd~s~  178 (296)
T KOG1540|consen  170 DLPFDDDSF  178 (296)
T ss_pred             cCCCCCCcc
Confidence            999998543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.52  E-value=8e-14  Score=91.38  Aligned_cols=82  Identities=26%  Similarity=0.468  Sum_probs=67.1

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      +.+......+++.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....+. +++++++|+
T Consensus       152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~  230 (315)
T PRK03522        152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS  230 (315)
T ss_pred             ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence            44455566666666655544467899999999999999999865 5999999999999999999988887 799999999


Q ss_pred             cCCc
Q 033605          106 RNLE  109 (115)
Q Consensus       106 ~~~~  109 (115)
                      .++.
T Consensus       231 ~~~~  234 (315)
T PRK03522        231 TQFA  234 (315)
T ss_pred             HHHH
Confidence            7654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.52  E-value=1.2e-13  Score=92.63  Aligned_cols=81  Identities=25%  Similarity=0.264  Sum_probs=66.9

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d  104 (115)
                      ...+...++.+++.+.....  ++.+|||+|||+|.++..++. .+..+++|+|+|+.+++.|+++....+.+++++++|
T Consensus       231 vLIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD  308 (423)
T PRK14966        231 VLIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGS  308 (423)
T ss_pred             ccCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            33466677888888776543  456999999999999999885 456799999999999999999998877789999999


Q ss_pred             ccCC
Q 033605          105 IRNL  108 (115)
Q Consensus       105 ~~~~  108 (115)
                      +.+.
T Consensus       309 l~e~  312 (423)
T PRK14966        309 WFDT  312 (423)
T ss_pred             hhcc
Confidence            8654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.52  E-value=1.2e-13  Score=87.87  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      .......+.+++.++..++.+|||+|||+|.++..++..+ .+++++|+|+.|++.++++..    ...++++|++.+|+
T Consensus        25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~   99 (251)
T PRK10258         25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPL   99 (251)
T ss_pred             HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcC
Confidence            3455555666666555567899999999999998888764 599999999999999988754    34688999999887


Q ss_pred             cC
Q 033605          111 RG  112 (115)
Q Consensus       111 ~~  112 (115)
                      ++
T Consensus       100 ~~  101 (251)
T PRK10258        100 AT  101 (251)
T ss_pred             CC
Confidence            75

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.51  E-value=1.8e-13  Score=90.17  Aligned_cols=87  Identities=22%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             cCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEc
Q 033605           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC  103 (115)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~  103 (115)
                      .+..+......+...+++.....++.+|||+|||+|.++..++..+ .+++|+|+++.|+..++.++...+. +++++++
T Consensus       159 ~~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~  237 (329)
T TIGR01177       159 PFFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG  237 (329)
T ss_pred             CccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec
Confidence            3555555556666666665555678899999999999998877664 5999999999999999999988877 7899999


Q ss_pred             cccCCcccC
Q 033605          104 DIRNLEWRG  112 (115)
Q Consensus       104 d~~~~~~~~  112 (115)
                      |+.++|+++
T Consensus       238 D~~~l~~~~  246 (329)
T TIGR01177       238 DATKLPLSS  246 (329)
T ss_pred             chhcCCccc
Confidence            999988754

This family is found exclusively in the Archaea.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.51  E-value=5e-14  Score=78.15  Aligned_cols=61  Identities=34%  Similarity=0.618  Sum_probs=50.6

Q ss_pred             EEEEcCCCChHHHHHHhc---C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           52 VADFGCGCGTLGAAATLL---G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        52 vLDlG~G~G~~~~~~~~~---~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      |||+|||+|..+..++..   + ..+++|+|+|+.|++.++++....+.++++++.|+.++++.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~   65 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD   65 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC
Confidence            799999999999999864   2 269999999999999999999877679999999999987654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.51  E-value=4e-13  Score=82.14  Aligned_cols=66  Identities=27%  Similarity=0.363  Sum_probs=55.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      +..+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++....+. +++++++|+.
T Consensus        24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~   91 (187)
T PRK08287         24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP   91 (187)
T ss_pred             HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence            34445557789999999999999999864 446999999999999999999887766 7899998874

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.51  E-value=3.4e-13  Score=84.28  Aligned_cols=63  Identities=30%  Similarity=0.476  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      ..++.+|||+|||+|.++..++..+. +++|+|+|+.|+..|+++....+.  ++++.++|+.+.+
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC  117 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence            34678999999999999999987644 999999999999999999876654  7999999988765

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.51  E-value=2.9e-13  Score=87.61  Aligned_cols=70  Identities=40%  Similarity=0.552  Sum_probs=60.3

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL   96 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   96 (115)
                      |.+..+.+.+++-.+++.+. .++.+|||+|||+|.+++..++.++.+|+|+|++|.+++.|++|+..+++
T Consensus       140 FGTG~H~TT~lcl~~l~~~~-~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~  209 (295)
T PF06325_consen  140 FGTGHHPTTRLCLELLEKYV-KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV  209 (295)
T ss_dssp             S-SSHCHHHHHHHHHHHHHS-STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-
T ss_pred             ccCCCCHHHHHHHHHHHHhc-cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC
Confidence            66788888888887777764 36789999999999999999999988999999999999999999999887

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.51  E-value=4.4e-13  Score=83.63  Aligned_cols=75  Identities=17%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ..+...+++.+...++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.|++++...+. +++++++|+.+.
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~  140 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG  140 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence            4455566666666788999999999999999998653  24699999999999999999998887 899999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.50  E-value=4.3e-13  Score=83.53  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ...+...+++.+...++.+|||+|||+|+.+..+++. + ..+|+++|+++.+++.++++....+. +++++++|+....
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~  140 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY  140 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence            3445555666666678899999999999999988864 2 35999999999999999999988777 8999999986543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.6e-13  Score=88.35  Aligned_cols=71  Identities=37%  Similarity=0.562  Sum_probs=62.3

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD   97 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   97 (115)
                      |.++.+.+.++.-..++.+.. ++.+|||+|||+|.+++.+++.++.+++|+|++|.+++.++.|...++++
T Consensus       141 FGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~  211 (300)
T COG2264         141 FGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE  211 (300)
T ss_pred             cCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc
Confidence            567777888887777766554 88899999999999999999999999999999999999999999988763

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.50  E-value=3.3e-13  Score=88.87  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChh
Q 033605            5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSD   82 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~   82 (115)
                      .++...+..+.|......++....+..+.+.+.+.+++.... .++.+|||+|||+|..+..+++ .+..+++++|+|+.
T Consensus        69 ~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~  148 (340)
T PLN02490         69 FIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH  148 (340)
T ss_pred             hhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH
Confidence            344455555555544444444333445556665555554433 3567999999999999988885 34569999999999


Q ss_pred             HHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           83 SLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        83 ~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      |++.++++....  +++++.+|++++++++
T Consensus       149 mL~~A~~k~~~~--~i~~i~gD~e~lp~~~  176 (340)
T PLN02490        149 QLAKAKQKEPLK--ECKIIEGDAEDLPFPT  176 (340)
T ss_pred             HHHHHHHhhhcc--CCeEEeccHHhCCCCC
Confidence            999999875422  6889999999988765

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=1.4e-13  Score=75.05  Aligned_cols=60  Identities=32%  Similarity=0.507  Sum_probs=50.1

Q ss_pred             EEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        53 LDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      ||+|||+|..+..+++.+..+++++|+++++++.++++....  ++.++++|++++|+++..
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~s   60 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNS   60 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT-
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--CchheeehHHhCcccccc
Confidence            899999999999999876679999999999999999988754  456999999999998754

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.49  E-value=2.9e-13  Score=87.79  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      .+.-....+++.+++.....++.+|||+|||+|.++..++... .+|+++|+++.+++.+++++...+.  +++++++|+
T Consensus        16 QnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         16 QHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            3343455566666666666688899999999999999998764 4899999999999999998876542  899999999


Q ss_pred             cCCccc
Q 033605          106 RNLEWR  111 (115)
Q Consensus       106 ~~~~~~  111 (115)
                      .+.+++
T Consensus        95 l~~~~~  100 (294)
T PTZ00338         95 LKTEFP  100 (294)
T ss_pred             hhhccc
Confidence            887654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.49  E-value=8.7e-13  Score=75.28  Aligned_cols=68  Identities=25%  Similarity=0.361  Sum_probs=56.5

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      +...+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++....+. +++++.+|+..
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~   80 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE   80 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence            444445556779999999999999999964 457999999999999999999887765 78999888764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.49  E-value=2.7e-13  Score=92.51  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      ..+...++.+.+.+++.+...++.+|||+|||+|.+++.+++.. .+|+|+|+|+.|++.|++++...+. +++++++|+
T Consensus       276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~  354 (443)
T PRK13168        276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL  354 (443)
T ss_pred             EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence            34555677788888877666677899999999999999999764 5999999999999999999988777 899999998


Q ss_pred             cC
Q 033605          106 RN  107 (115)
Q Consensus       106 ~~  107 (115)
                      .+
T Consensus       355 ~~  356 (443)
T PRK13168        355 EE  356 (443)
T ss_pred             HH
Confidence            64

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.49  E-value=5.1e-13  Score=82.23  Aligned_cols=68  Identities=24%  Similarity=0.388  Sum_probs=57.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      +...+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++...+. +++++++|+.+
T Consensus        32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            444545557789999999999999999853 456999999999999999999988776 79999998854

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.49  E-value=9.3e-14  Score=86.43  Aligned_cols=64  Identities=30%  Similarity=0.492  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ..+.+|||+|||-|.++..+|+.+ ++|+|+|+++++++.|+....+.++++++.+..++++...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~  121 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA  121 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc
Confidence            478899999999999999999997 5999999999999999999999888888888877766544

>TIGR00740 methyltransferase, putative

Probab=99.49  E-value=8.1e-13  Score=83.62  Aligned_cols=66  Identities=23%  Similarity=0.336  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|+++....+.  +++++++|+.++++++
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  122 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN  122 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC
Confidence            36679999999999999988863   456999999999999999998876543  7899999999888654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.48  E-value=6.1e-13  Score=86.15  Aligned_cols=80  Identities=26%  Similarity=0.373  Sum_probs=63.9

Q ss_pred             CchhhHHHHHHHHHHhcCCCCC-CeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605           28 TGPHIASRMLYTAENSFGDVSN-KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~-~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~  103 (115)
                      .+...++.+++.++..+....+ .+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++....+.  +++++++
T Consensus        93 iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~  172 (284)
T TIGR00536        93 IPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS  172 (284)
T ss_pred             CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            4556677777777655432233 69999999999999999964 446999999999999999999988776  4999999


Q ss_pred             cccC
Q 033605          104 DIRN  107 (115)
Q Consensus       104 d~~~  107 (115)
                      |+.+
T Consensus       173 d~~~  176 (284)
T TIGR00536       173 NLFE  176 (284)
T ss_pred             chhc
Confidence            9765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.48  E-value=8.3e-13  Score=85.48  Aligned_cols=79  Identities=20%  Similarity=0.261  Sum_probs=61.6

Q ss_pred             chhhHHHHHHHHHHh-cCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605           29 GPHIASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d  104 (115)
                      +...++.++...+.. ....++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++....+.  +++++++|
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D  180 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD  180 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            444555566555442 22234579999999999999999964 456999999999999999999988775  69999999


Q ss_pred             ccC
Q 033605          105 IRN  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +.+
T Consensus       181 ~~~  183 (284)
T TIGR03533       181 LFA  183 (284)
T ss_pred             hhh
Confidence            753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.48  E-value=4.5e-13  Score=92.60  Aligned_cols=102  Identities=19%  Similarity=0.228  Sum_probs=75.6

Q ss_pred             hhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcC------------------------CCCCCeEEEEcCCCCh
Q 033605            6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG------------------------DVSNKVVADFGCGCGT   61 (115)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~vLDlG~G~G~   61 (115)
                      ++..+.....+.....--.....|+..++.+++.+++.+.                        ..++.+|||+|||+|.
T Consensus        72 lqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~  151 (506)
T PRK01544         72 IAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGC  151 (506)
T ss_pred             HHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhH
Confidence            3344444344443434444567788889999988776542                        1134689999999999


Q ss_pred             HHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           62 LGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        62 ~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      +++.++. .+..+|+++|+|+.+++.|+++....+.  +++++++|+.+
T Consensus       152 iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~  200 (506)
T PRK01544        152 IAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE  200 (506)
T ss_pred             HHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh
Confidence            9999885 4567999999999999999999887765  68999999753

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.47  E-value=1.3e-12  Score=81.03  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .+...+.+.+...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.  +++++.+|+.+..
T Consensus        59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence            34555555555567789999999999999888863 2 35999999999999999999887765  5899999987643

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=6.5e-13  Score=84.15  Aligned_cols=85  Identities=19%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      +..+.-.....++.+++.....++++|||||+|.|.+|..+++.+. +|+++|+++.++...++.....+ |++++++|+
T Consensus         8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~-n~~vi~~Da   85 (259)
T COG0030           8 LGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD-NLTVINGDA   85 (259)
T ss_pred             cccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc-ceEEEeCch
Confidence            3444555666677888887777889999999999999999998855 89999999999999999876333 899999999


Q ss_pred             cCCcccC
Q 033605          106 RNLEWRG  112 (115)
Q Consensus       106 ~~~~~~~  112 (115)
                      .+.++++
T Consensus        86 Lk~d~~~   92 (259)
T COG0030          86 LKFDFPS   92 (259)
T ss_pred             hcCcchh
Confidence            9999885

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.47  E-value=1.8e-12  Score=78.23  Aligned_cols=62  Identities=37%  Similarity=0.575  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      +..+|||+|||+|.+++.+++... .+|+++|+++.+++.++.+...++. +++++..|+.+..
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~   94 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL   94 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc
Confidence            777999999999999999997544 4799999999999999999999888 4999999986533

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4.5e-13  Score=86.46  Aligned_cols=86  Identities=27%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             CccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-
Q 033605           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-   96 (115)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-   96 (115)
                      ..........|..-++.+++.++........ +|||+|||+|..++.++.. +..+|+|+|+|+.+++.|+.|+..++. 
T Consensus        82 ~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~  160 (280)
T COG2890          82 RFKVDEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV  160 (280)
T ss_pred             eeeeCCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc
Confidence            3333444556677778788776533232222 8999999999999999965 446999999999999999999999985 


Q ss_pred             ceeEEEccc
Q 033605           97 DIDFVQCDI  105 (115)
Q Consensus        97 ~v~~~~~d~  105 (115)
                      ++.++++|+
T Consensus       161 ~~~~~~~dl  169 (280)
T COG2890         161 RVLVVQSDL  169 (280)
T ss_pred             cEEEEeeec
Confidence            777777764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=8.7e-13  Score=86.17  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             chhhHHHHHHHHHHh-cCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605           29 GPHIASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d  104 (115)
                      +...+...+...+.. .+...+.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++....+.  +++++++|
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            444555555555432 22222368999999999999999864 457999999999999999999988775  69999999


Q ss_pred             ccC
Q 033605          105 IRN  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +.+
T Consensus       193 ~~~  195 (307)
T PRK11805        193 LFA  195 (307)
T ss_pred             hhh
Confidence            754

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.46  E-value=7.6e-13  Score=90.99  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=60.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      +.+++.+...++.+|||+|||+|..+..+++....+|+|+|+|+.++..|+++......++++.++|+...++++
T Consensus       256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~  330 (475)
T PLN02336        256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD  330 (475)
T ss_pred             HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC
Confidence            334444445567899999999999999988654559999999999999999887655458999999999888765

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.46  E-value=3.8e-13  Score=83.22  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc-cCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI-RNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~-~~~~  109 (115)
                      ++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++....+. ++.++++|+ +.++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~  104 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL  104 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH
Confidence            5679999999999999999864 456899999999999999999887776 899999999 6655

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.46  E-value=9.9e-13  Score=83.89  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ....+.+.+++.....++.+|||+|||+|.++..+++... .++++|+++.+++.++.+... ..+++++++|+.+++++
T Consensus        13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~   90 (253)
T TIGR00755        13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP   90 (253)
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh
Confidence            3445555555555666788999999999999999998754 799999999999999987754 23899999999988875

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.45  E-value=8.6e-13  Score=81.70  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++..    ++.++++|+.+ ++++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~  103 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKD  103 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCC
Confidence            36678999999999999999864 55699999999999999988653    46788888877 6654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.45  E-value=1.2e-12  Score=85.58  Aligned_cols=60  Identities=33%  Similarity=0.456  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc------CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++....      ..++++..+|++++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l  209 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL  209 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc
Confidence            577999999999999999998754 9999999999999999987654      12678888887654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.44  E-value=1.9e-12  Score=82.22  Aligned_cols=79  Identities=27%  Similarity=0.346  Sum_probs=63.5

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      .+...+..++..+..... ..+.+|||+|||+|.++..++.. +..+++|+|+++.+++.++.+....+. ++.++++|+
T Consensus        68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~  146 (251)
T TIGR03534        68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW  146 (251)
T ss_pred             cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence            344455666666666543 34569999999999999999964 456999999999999999999988777 699999998


Q ss_pred             cC
Q 033605          106 RN  107 (115)
Q Consensus       106 ~~  107 (115)
                      .+
T Consensus       147 ~~  148 (251)
T TIGR03534       147 FE  148 (251)
T ss_pred             hc
Confidence            65

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14967 putative methyltransferase; Provisional

Probab=99.44  E-value=1e-12  Score=82.42  Aligned_cols=68  Identities=29%  Similarity=0.306  Sum_probs=56.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +......++.+|||+|||+|.++..++..+..+++++|+++.+++.++++....+.+++++++|+.+.
T Consensus        29 l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~   96 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA   96 (223)
T ss_pred             HHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh
Confidence            33334456789999999999999999876556999999999999999999887776788899888653

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=80.43  Aligned_cols=75  Identities=20%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           33 ASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        33 ~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      +..+.+.+...+.. .++.+|||+|||+|.+++.++..+..+|+++|+++.+++.+++++...+. +++++++|+.+
T Consensus        37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~  113 (199)
T PRK10909         37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALS  113 (199)
T ss_pred             CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHH
Confidence            34444444443322 35679999999999999976655567999999999999999999988777 89999999865

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.44  E-value=1.2e-12  Score=79.52  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.+++++++|+.+.+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   79 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV   79 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc
Confidence            3667999999999999999998755 9999999999999999998877778889999986543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.43  E-value=2.4e-12  Score=83.51  Aligned_cols=79  Identities=32%  Similarity=0.462  Sum_probs=60.8

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~  103 (115)
                      |.+..+.+.++...+++.+. .++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++...++.  ++.+..+
T Consensus       138 FgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~  216 (288)
T TIGR00406       138 FGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI  216 (288)
T ss_pred             ccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence            33555566666655555543 36789999999999999988887777999999999999999999887765  4566665


Q ss_pred             cc
Q 033605          104 DI  105 (115)
Q Consensus       104 d~  105 (115)
                      +.
T Consensus       217 ~~  218 (288)
T TIGR00406       217 YL  218 (288)
T ss_pred             cc
Confidence            53

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.43  E-value=1.1e-12  Score=87.87  Aligned_cols=82  Identities=24%  Similarity=0.432  Sum_probs=66.5

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      ++++....+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+++...++. +++++++|
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d  289 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD  289 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            345556666666666655443456799999999999999999764 5999999999999999999988887 89999999


Q ss_pred             ccCC
Q 033605          105 IRNL  108 (115)
Q Consensus       105 ~~~~  108 (115)
                      ++++
T Consensus       290 ~~~~  293 (374)
T TIGR02085       290 SAKF  293 (374)
T ss_pred             HHHH
Confidence            8654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.43  E-value=1.3e-12  Score=81.39  Aligned_cols=63  Identities=16%  Similarity=0.029  Sum_probs=50.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-------------cCCceeEEEccccCCcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~v~~~~~d~~~~~~  110 (115)
                      .++.+|||+|||.|..+..+++.+. +|+|+|+|+.+++.+......             .+.+++++++|+.+++.
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            3567999999999999999998866 999999999999986442211             12378999999988773

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.42  E-value=4.5e-13  Score=82.40  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ...++||+|||+|.++..+++ .+..+++|+|+++.+++.|+++....+. |+.++++|+.++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~   78 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL   78 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence            556999999999999999996 4567999999999999999998887776 899999999764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.42  E-value=8e-13  Score=83.22  Aligned_cols=68  Identities=22%  Similarity=0.336  Sum_probs=59.1

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      +.......+|||+|||+|..++.+++. ..+++++||+++.+.+.|+++...++.  +++++++|+.++..
T Consensus        39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~  109 (248)
T COG4123          39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK  109 (248)
T ss_pred             hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence            334445789999999999999999965 558999999999999999999998777  89999999987653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.1e-12  Score=88.82  Aligned_cols=84  Identities=25%  Similarity=0.424  Sum_probs=75.6

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      ++.+....+.+...+.+++...+++++||+.||.|.+++.++.. ..+|+|+|+++++++.|++|+..+++ |++|..++
T Consensus       271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~  349 (432)
T COG2265         271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD  349 (432)
T ss_pred             eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            56777888999999999988878899999999999999999965 55999999999999999999999998 89999999


Q ss_pred             ccCCcc
Q 033605          105 IRNLEW  110 (115)
Q Consensus       105 ~~~~~~  110 (115)
                      ++++..
T Consensus       350 ae~~~~  355 (432)
T COG2265         350 AEEFTP  355 (432)
T ss_pred             HHHHhh
Confidence            987653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.42  E-value=1.9e-12  Score=83.27  Aligned_cols=110  Identities=20%  Similarity=0.126  Sum_probs=78.3

Q ss_pred             chhhhhhhhcccCCCCccccccCCCchhh-HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh
Q 033605            4 KQLESVLGDLEQFSNPKVELEQYPTGPHI-ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD   82 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~   82 (115)
                      +.++.....+..|.+....+.......++ +....+.+...++..++++|||||||+|+++..++..+++.|+|+|.++.
T Consensus        70 ~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l  149 (315)
T PF08003_consen   70 QQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL  149 (315)
T ss_pred             HHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence            45666777777887755555554444444 44456667777777899999999999999999999988989999999999


Q ss_pred             HHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           83 SLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        83 ~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ...+.+......+.  .+..+..-++++|..+.
T Consensus       150 f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~  182 (315)
T PF08003_consen  150 FYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA  182 (315)
T ss_pred             HHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence            88775554443332  34455456777765333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.41  E-value=1.7e-12  Score=88.34  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=65.7

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      .+......+...+.+.+...++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++++..++. +++++++|+.
T Consensus       272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~  350 (431)
T TIGR00479       272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE  350 (431)
T ss_pred             cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence            344556666777766655556689999999999999999876 35999999999999999999988877 8999999986


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      +
T Consensus       351 ~  351 (431)
T TIGR00479       351 T  351 (431)
T ss_pred             H
Confidence            5

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.41  E-value=2.4e-12  Score=77.21  Aligned_cols=98  Identities=23%  Similarity=0.238  Sum_probs=70.9

Q ss_pred             hhcccCCCCccccccCCCchhhHHHHHHHHHHhcC---CCC-CCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHH
Q 033605           11 GDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG---DVS-NKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLE   85 (115)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~   85 (115)
                      ..+.+|..+...-+ .+-......++++++.+...   ..+ ..+|||+|||.|.+...+++.+. ...+|+|+|+.+++
T Consensus        27 ~El~Nfr~hgd~GE-vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~  105 (227)
T KOG1271|consen   27 LELTNFREHGDEGE-VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVE  105 (227)
T ss_pred             HHHhhcccCCCccc-eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHH
Confidence            34445544322222 22235566777777776654   233 34999999999999999997553 46999999999999


Q ss_pred             HHHHHhhccCC--ceeEEEccccCCc
Q 033605           86 LASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        86 ~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .|+..+...+.  .|+|.+.|+.+-.
T Consensus       106 LA~niAe~~~~~n~I~f~q~DI~~~~  131 (227)
T KOG1271|consen  106 LAQNIAERDGFSNEIRFQQLDITDPD  131 (227)
T ss_pred             HHHHHHHhcCCCcceeEEEeeccCCc
Confidence            99988888777  3999999987744

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=4.2e-12  Score=81.74  Aligned_cols=81  Identities=23%  Similarity=0.249  Sum_probs=63.3

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhh-ccCCceeEEEcc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAA-DLELDIDFVQCD  104 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~~~~v~~~~~d  104 (115)
                      ..+...++.+++.+.......++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.++++.. ....++.++++|
T Consensus        87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d  166 (275)
T PRK09328         87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGD  166 (275)
T ss_pred             eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            3455556677777765544556789999999999999999864 45799999999999999999987 222279999999


Q ss_pred             ccC
Q 033605          105 IRN  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +.+
T Consensus       167 ~~~  169 (275)
T PRK09328        167 WFE  169 (275)
T ss_pred             ccC
Confidence            754

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.40  E-value=5.7e-12  Score=75.97  Aligned_cols=67  Identities=27%  Similarity=0.407  Sum_probs=59.0

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ..+...++++++|+|||+|..+++++. .+..+++++|-++++++..++|..+++. |++++.+++-+.
T Consensus        28 s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~   96 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA   96 (187)
T ss_pred             HhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence            445667889999999999999999995 3457999999999999999999999998 999999998543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.40  E-value=2.4e-12  Score=85.55  Aligned_cols=81  Identities=23%  Similarity=0.380  Sum_probs=64.2

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      ++.+......+++.+.+.+...++ .+||+.||+|.+++.++.. ..+|+|+|+++.+++.|+.++..+++ |++|++++
T Consensus       175 fQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~  252 (352)
T PF05958_consen  175 FQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGD  252 (352)
T ss_dssp             --SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred             ccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence            456677788899999888776555 8999999999999999987 45999999999999999999999998 99999988


Q ss_pred             ccCC
Q 033605          105 IRNL  108 (115)
Q Consensus       105 ~~~~  108 (115)
                      ++++
T Consensus       253 ~~~~  256 (352)
T PF05958_consen  253 AEDF  256 (352)
T ss_dssp             SHHC
T ss_pred             ccch
Confidence            7654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.40  E-value=5.2e-12  Score=80.48  Aligned_cols=78  Identities=26%  Similarity=0.291  Sum_probs=61.0

Q ss_pred             CchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           28 TGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      .+...++.+++.+...... ..+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.+++|...++  ++++++|+
T Consensus        65 ~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~  142 (251)
T TIGR03704        65 VPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDL  142 (251)
T ss_pred             CCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeec
Confidence            3556677777777665432 2345899999999999999985 445699999999999999999987654  47888887


Q ss_pred             cC
Q 033605          106 RN  107 (115)
Q Consensus       106 ~~  107 (115)
                      .+
T Consensus       143 ~~  144 (251)
T TIGR03704       143 YD  144 (251)
T ss_pred             hh
Confidence            64

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.39  E-value=8.8e-12  Score=77.60  Aligned_cols=72  Identities=17%  Similarity=0.120  Sum_probs=59.0

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      .....+...+...++.+|||+|||+|..+..++... .+++++|+++.+++.+++++...+. +++++++|+.+
T Consensus        65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  137 (212)
T PRK00312         65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK  137 (212)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence            344445555556678899999999999998887664 4899999999999999999988777 79999999754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.39  E-value=3.6e-12  Score=85.07  Aligned_cols=68  Identities=21%  Similarity=0.258  Sum_probs=57.5

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ...+....+..+||||||+|.++..+|. .+...++|+|+++.++..+.+++...+. |+.++++|+..+
T Consensus       115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l  184 (390)
T PRK14121        115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL  184 (390)
T ss_pred             HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh
Confidence            3333444667999999999999999996 4567999999999999999999988887 999999998653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.38  E-value=7.1e-12  Score=84.11  Aligned_cols=74  Identities=26%  Similarity=0.311  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ....+..+.+.+...++.+|||+|||+|.++..+++....+|+|+|+|+++++.++++...  .++++..+|+.++
T Consensus       152 q~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l  225 (383)
T PRK11705        152 QEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDL  225 (383)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhc
Confidence            3445666667767778889999999999999999875455999999999999999998753  3578888887654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=8.3e-12  Score=76.68  Aligned_cols=74  Identities=19%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc-CCcc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR-NLEW  110 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~-~~~~  110 (115)
                      ++-.+.+.+...++++|||||||+|+.+..+++... +|+++|..++..+.|++++...+. ||.++++|.. .++-
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~  135 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE  135 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence            444445555667899999999999999999998755 999999999999999999999998 9999999963 4443

>TIGR03438 probable methyltransferase

Probab=99.38  E-value=4.1e-12  Score=82.89  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC-CcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN-LEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~-~~~~~  112 (115)
                      ++.+|||+|||+|..+..+++..  ..+++++|+|++|++.++++.....  .++.++++|+.+ +++++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~  132 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP  132 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence            56799999999999999998653  4599999999999999998876532  378889999876 44443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PHA03412 putative methyltransferase; Provisional

Probab=99.38  E-value=3.6e-12  Score=79.78  Aligned_cols=84  Identities=15%  Similarity=0.275  Sum_probs=65.3

Q ss_pred             ccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----CCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      .....+|.+|..+...++..   .   ..+.+|||+|||+|.++..+++.    ...+|+++|+++.+++.|+++..   
T Consensus        27 ~~~~GqFfTP~~iAr~~~i~---~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---   97 (241)
T PHA03412         27 NSELGAFFTPIGLARDFTID---A---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---   97 (241)
T ss_pred             cccCCccCCCHHHHHHHHHh---c---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---
Confidence            45567899999887765422   1   14679999999999999988853    24599999999999999998764   


Q ss_pred             CceeEEEccccCCcccCC
Q 033605           96 LDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        96 ~~v~~~~~d~~~~~~~~~  113 (115)
                       ++.++++|+...++..+
T Consensus        98 -~~~~~~~D~~~~~~~~~  114 (241)
T PHA03412         98 -EATWINADALTTEFDTL  114 (241)
T ss_pred             -CCEEEEcchhcccccCC
Confidence             57899999987665443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.38  E-value=4.1e-12  Score=79.98  Aligned_cols=71  Identities=28%  Similarity=0.460  Sum_probs=57.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      +......++.+|||+|||+|..+..++...  ..+++++|+++.+++.++++....+.  ++.++.+|+.+.+++
T Consensus        44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence            333334467899999999999999998654  37999999999999999998866433  789999999887754

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.38  E-value=7.5e-12  Score=77.20  Aligned_cols=68  Identities=24%  Similarity=0.481  Sum_probs=57.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      +......++.+|||+|||+|.++..++..  ...+|+++|+++.+++.++++....+.  ++.++.+|+.+.
T Consensus        33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~  104 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI  104 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence            34556668889999999999999998853  346999999999999999999888873  899999998753

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.38  E-value=1.5e-12  Score=73.80  Aligned_cols=61  Identities=38%  Similarity=0.547  Sum_probs=54.8

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      +.+|||+|||+|.++..+++.+..+++|+|+++..++.++.+....+.  +++++++|+.+..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   63 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP   63 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence            468999999999999999977657999999999999999999998866  7999999987765

...

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.37  E-value=7.9e-12  Score=76.00  Aligned_cols=70  Identities=23%  Similarity=0.442  Sum_probs=52.4

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      .++...-.++||+|||.|.++..++.. +.+++++|+|+.+++.|+++....+ +|++++.|+.+...+.+|
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P~~~F  107 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWPEGRF  107 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT---SS-E
T ss_pred             hcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCCCCCe
Confidence            345556678999999999999999987 4599999999999999999998765 899999999877665554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK08317 hypothetical protein; Provisional

Probab=99.37  E-value=1.6e-11  Score=77.15  Aligned_cols=76  Identities=26%  Similarity=0.333  Sum_probs=60.3

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .+.+.+.....++.+|||+|||+|.++..+++.  +..+++|+|+++.++..++++......++.++..|+..+++++
T Consensus         8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   85 (241)
T PRK08317          8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD   85 (241)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence            344455556667889999999999999999864  3469999999999999999884333347999999998877654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.36  E-value=5.9e-12  Score=83.72  Aligned_cols=78  Identities=19%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      .+......+++.+.+.... .+.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.+++++..+++ +++++++|++
T Consensus       178 ~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~  255 (353)
T TIGR02143       178 PNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE  255 (353)
T ss_pred             CCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence            3345566777777666432 23479999999999999888763 5999999999999999999998887 8999999987


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      +
T Consensus       256 ~  256 (353)
T TIGR02143       256 E  256 (353)
T ss_pred             H
Confidence            5

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.36  E-value=7.2e-12  Score=78.48  Aligned_cols=65  Identities=26%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             CeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605           50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  114 (115)
                      ++|||+|||+|..+..+++. +..+++|+|+|+.++..++++....+.  +++++.+|+...++++.|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~f   68 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTY   68 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCC
Confidence            37999999999999999864 456999999999999999999877665  789999999776665544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=1.2e-11  Score=81.16  Aligned_cols=76  Identities=18%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ..+...+++.+...++.+|||+|||+|.++..+++...  ..|+++|+++.+++.|+++....+. ++.++++|+.+..
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~  144 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence            34445555555556778999999999999999986432  4799999999999999999888777 7999999976543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.35  E-value=9.5e-12  Score=83.10  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=55.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRN  107 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~  107 (115)
                      +.+++.++.....+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++..++.    +++++..|+..
T Consensus       218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~  292 (378)
T PRK15001        218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  292 (378)
T ss_pred             HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence            34555655545569999999999999999864 567999999999999999999876542    67888888643

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.35  E-value=9.4e-12  Score=76.25  Aligned_cols=61  Identities=23%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .++.+|||++||+|.++++++..++.+|+++|.++.+++.+++++...+.  +++++++|+.+
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            36789999999999999999988888999999999999999999988776  68999999844

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.35  E-value=1.5e-11  Score=77.91  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      ...+++.+++.....+++.|||+|.|||.++..+.+.+. +|+++|+++.|+...+++....+.  .++++.||+.+.++
T Consensus        43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL  121 (315)
T ss_pred             CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence            456777788888888999999999999999999998844 999999999999999999988775  79999999988776


Q ss_pred             c
Q 033605          111 R  111 (115)
Q Consensus       111 ~  111 (115)
                      |
T Consensus       122 P  122 (315)
T KOG0820|consen  122 P  122 (315)
T ss_pred             c
Confidence            5

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.35  E-value=7.4e-12  Score=83.53  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      +.+....+.+++.+.+.+.. .+.++||++||+|.+++.+++. ..+|+|+|+++.+++.+++|+..++. +++++++|+
T Consensus       186 Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~  263 (362)
T PRK05031        186 QPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA  263 (362)
T ss_pred             ccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34556677788777776543 2357999999999999988875 45999999999999999999988887 899999998


Q ss_pred             cC
Q 033605          106 RN  107 (115)
Q Consensus       106 ~~  107 (115)
                      .+
T Consensus       264 ~~  265 (362)
T PRK05031        264 EE  265 (362)
T ss_pred             HH
Confidence            65

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.35  E-value=7.7e-12  Score=78.17  Aligned_cols=63  Identities=14%  Similarity=0.008  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-------------cCCceeEEEccccCCcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~v~~~~~d~~~~~~  110 (115)
                      .++.+|||+|||.|..+..+++.+. +|+|+|+|+.+++.+......             ...++++.++|+.+++.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence            3567999999999999999999866 999999999999987432111             12268999999988753

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.35  E-value=1e-11  Score=79.18  Aligned_cols=75  Identities=39%  Similarity=0.565  Sum_probs=53.8

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~  103 (115)
                      +..+.+.+..-..+... ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....+.  ++.+..+
T Consensus       100 tg~h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~  176 (250)
T PRK00517        100 TGTHPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG  176 (250)
T ss_pred             CCCCHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence            33344444433333332 236789999999999999988877666799999999999999999887765  3444443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.35  E-value=7e-12  Score=78.89  Aligned_cols=63  Identities=27%  Similarity=0.390  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++...   ++.++.+|+++.++++
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~   96 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLPLED   96 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCCCCC
Confidence            345799999999999999998653 46799999999999999887652   6889999999888654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.35  E-value=1.7e-11  Score=79.03  Aligned_cols=61  Identities=20%  Similarity=0.346  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-C---CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-G---ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .+.+|||+|||+|.++..+++. +   ...++|+|+|+.++..|+++..    ++.+..+|+.++|+++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~  149 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFAD  149 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcC
Confidence            5578999999999999988753 2   2379999999999999987643    6889999999999875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.35  E-value=6.6e-12  Score=80.82  Aligned_cols=68  Identities=25%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ...++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++....+. +++++.+|++++++++
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~  144 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD  144 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC
Confidence            3457789999999999988877753 33 4899999999999999999877766 8999999999988765

>PRK04266 fibrillarin; Provisional

Probab=99.34  E-value=2.3e-11  Score=76.40  Aligned_cols=64  Identities=19%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++..++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.+++... .|+.++.+|+..
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~  131 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARK  131 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCC
Confidence            456668889999999999999999964 3458999999999999887766543 378999999864

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.34  E-value=2.5e-11  Score=76.24  Aligned_cols=59  Identities=34%  Similarity=0.532  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+.  ++.+..+|+.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~  122 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE  122 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence            4677999999999999999987755 799999999999999998877655  7888888854

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.33  E-value=5.7e-12  Score=82.41  Aligned_cols=89  Identities=26%  Similarity=0.291  Sum_probs=76.6

Q ss_pred             ccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEE
Q 033605           24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQ  102 (115)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~  102 (115)
                      .+|..+.....++.+.+++.....++..|||..||||.+.+++.-.+. +++|.|++..|+.-++.|+..+++ ...++.
T Consensus       173 RPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~  251 (347)
T COG1041         173 RPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLK  251 (347)
T ss_pred             CCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence            346666777777888888777777899999999999999999988766 999999999999999999999987 776777


Q ss_pred             c-cccCCcccCC
Q 033605          103 C-DIRNLEWRGK  113 (115)
Q Consensus       103 ~-d~~~~~~~~~  113 (115)
                      + |+.++|++++
T Consensus       252 ~~Da~~lpl~~~  263 (347)
T COG1041         252 VLDATNLPLRDN  263 (347)
T ss_pred             ecccccCCCCCC
Confidence            6 9999999874

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.33  E-value=1.9e-11  Score=80.98  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.++.....+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++...++...+++..|+..
T Consensus       189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~  256 (342)
T PRK09489        189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS  256 (342)
T ss_pred             HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence            34444344568999999999999999965 44699999999999999999998877766778888654

>PHA03411 putative methyltransferase; Provisional

Probab=99.33  E-value=1.2e-11  Score=79.02  Aligned_cols=80  Identities=13%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             ccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEE
Q 033605           24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQ  102 (115)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~  102 (115)
                      ..|.+|..+....+   ..   .....+|||+|||+|.++..++.. +..+|+|+|+++.+++.++++..    ++++++
T Consensus        46 G~FfTP~~i~~~f~---~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~  115 (279)
T PHA03411         46 GAFFTPEGLAWDFT---ID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWIT  115 (279)
T ss_pred             eeEcCCHHHHHHHH---hc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEEE
Confidence            45677777754432   11   124569999999999999888754 34699999999999999998753    678999


Q ss_pred             ccccCCcccCC
Q 033605          103 CDIRNLEWRGK  113 (115)
Q Consensus       103 ~d~~~~~~~~~  113 (115)
                      +|+.++....+
T Consensus       116 ~D~~e~~~~~k  126 (279)
T PHA03411        116 SDVFEFESNEK  126 (279)
T ss_pred             CchhhhcccCC
Confidence            99987764433

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.32  E-value=3e-11  Score=73.43  Aligned_cols=87  Identities=29%  Similarity=0.324  Sum_probs=62.2

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCe---------EEEEeCChhHHHHHHHHhhccC
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQ---------VIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~---------v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      +..+....+.+...++......++..|||..||+|.+.++.+.. ....         ++|.|+++.++..+++|+...+
T Consensus         6 ~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag   85 (179)
T PF01170_consen    6 FFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG   85 (179)
T ss_dssp             SSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence            44455555666666666656667889999999999999998742 2223         8999999999999999999887


Q ss_pred             C--ceeEEEccccCCcccC
Q 033605           96 L--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        96 ~--~v~~~~~d~~~~~~~~  112 (115)
                      .  .+.+.+.|+.++++.+
T Consensus        86 ~~~~i~~~~~D~~~l~~~~  104 (179)
T PF01170_consen   86 VEDYIDFIQWDARELPLPD  104 (179)
T ss_dssp             -CGGEEEEE--GGGGGGTT
T ss_pred             cCCceEEEecchhhccccc
Confidence            7  6899999999999543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.32  E-value=2.2e-11  Score=75.62  Aligned_cols=74  Identities=24%  Similarity=0.327  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      ...+...+++.+...++.+|||+|||+|+.+..++.. +. ..|+++|+.+..++.|++++...+. |+.++++|..
T Consensus        57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~  133 (209)
T PF01135_consen   57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS  133 (209)
T ss_dssp             -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence            3455666666767779999999999999999999864 32 3799999999999999999999888 9999999964

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK06922 hypothetical protein; Provisional

Probab=99.32  E-value=1.8e-11  Score=85.96  Aligned_cols=63  Identities=16%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|..+..+++ .+..+++|+|+|+.|++.|+++....+.++.++++|+.+++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp  480 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS  480 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc
Confidence            3678999999999999988885 55679999999999999999887665557889999998876

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.30  E-value=1.3e-11  Score=80.44  Aligned_cols=73  Identities=27%  Similarity=0.385  Sum_probs=64.4

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ++++....+++.|||+|||+|.+++..++.++++|+++|.|. |.+.|++.+..+..  +++++.|.++++++|++
T Consensus       169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk  243 (517)
T KOG1500|consen  169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEK  243 (517)
T ss_pred             HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence            444445568899999999999999999999999999999987 89999998887766  89999999999999975

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.30  E-value=1.9e-11  Score=77.51  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=64.5

Q ss_pred             CCCchhhHHHHHHHHHHhcCC---CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--cee
Q 033605           26 YPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DID   99 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~   99 (115)
                      ...|+..++..++.+++....   .++..+||+|||+|.+++.++. .+...++++|.|+.++..|.+|+..++.  .+.
T Consensus       123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~  202 (328)
T KOG2904|consen  123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE  202 (328)
T ss_pred             eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence            456777788877777766543   4566899999999999999884 6678999999999999999999998877  677


Q ss_pred             EEEccc
Q 033605          100 FVQCDI  105 (115)
Q Consensus       100 ~~~~d~  105 (115)
                      +++.++
T Consensus       203 v~~~~m  208 (328)
T KOG2904|consen  203 VIHNIM  208 (328)
T ss_pred             EEeccc
Confidence            765544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.29  E-value=1.5e-11  Score=77.50  Aligned_cols=60  Identities=32%  Similarity=0.530  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-------ceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~  109 (115)
                      +++|||+|||.|.++..+++.++ .|+|+|+++.|++.|++.....+.       ++++.+.++++..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT  156 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc
Confidence            47899999999999999999865 999999999999999998444433       3667777777654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=99.29  E-value=4.5e-11  Score=76.69  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      +..+.-....+++.+++.+...++..|||+|+|.|.++..+++.+ .+++++|+++.+++..++..... .+++++.+|+
T Consensus         8 ~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~-~~~~vi~~D~   85 (262)
T PF00398_consen    8 LGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN-PNVEVINGDF   85 (262)
T ss_dssp             CTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC-SSEEEEES-T
T ss_pred             CCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc-ccceeeecch
Confidence            344455566777777777776788999999999999999999876 69999999999999999987632 2899999999


Q ss_pred             cCCcccC
Q 033605          106 RNLEWRG  112 (115)
Q Consensus       106 ~~~~~~~  112 (115)
                      .+++.+.
T Consensus        86 l~~~~~~   92 (262)
T PF00398_consen   86 LKWDLYD   92 (262)
T ss_dssp             TTSCGGG
T ss_pred             hccccHH
Confidence            9988765

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.28  E-value=1.8e-11  Score=79.90  Aligned_cols=71  Identities=27%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      +..+....++++|||+|||+|.+++..|+.++.+|+++|.|.-+ +.|.+.+..++.  -++++++.++++.+|
T Consensus        52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP  124 (346)
T KOG1499|consen   52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP  124 (346)
T ss_pred             HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC
Confidence            33333346889999999999999999999999999999999855 999999988887  589999999998887

>PRK14968 putative methyltransferase; Provisional

Probab=99.28  E-value=6.6e-11  Score=72.11  Aligned_cols=60  Identities=22%  Similarity=0.372  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-c--eeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++....+. +  +.++++|+.+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~   84 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE   84 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc
Confidence            46779999999999999999977 46999999999999999998877665 3  8888888755

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.28  E-value=6.2e-11  Score=77.53  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ...+.+.....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.++++....+.  +++++.+|+.+.++++
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~  215 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE  215 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence            34455555556678999999999999999996 45579999998 7899999999888776  7999999997665543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.27  E-value=6.4e-11  Score=74.64  Aligned_cols=79  Identities=30%  Similarity=0.440  Sum_probs=60.8

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .......+..+.......++.+|||+|||+|.++..+++.+ .+++++|+++.++..++++....+.+++++..++.+++
T Consensus        30 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  108 (233)
T PRK05134         30 HRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA  108 (233)
T ss_pred             HHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh
Confidence            34444445555555445577899999999999999888764 48999999999999999887766557788888877654

>PRK06202 hypothetical protein; Provisional

Probab=99.27  E-value=6.3e-11  Score=74.72  Aligned_cols=63  Identities=27%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc----C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      .++.+|||+|||+|.++..+++.    + ..+++|+|+|+.|++.|+++....  ++.+...++..++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~l~~~  126 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--GVTFRQAVSDELVAE  126 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--CCeEEEEeccccccc
Confidence            46679999999999998888742    2 248999999999999998876433  455666666555543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.25  E-value=6.7e-11  Score=79.69  Aligned_cols=61  Identities=28%  Similarity=0.403  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++++..++.   +++++++|+.++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~  283 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL  283 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH
Confidence            6789999999999999887766667999999999999999999988775   689999998654

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2e-11  Score=82.93  Aligned_cols=81  Identities=26%  Similarity=0.368  Sum_probs=70.1

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      |+++....+.+...+.++.....+..++|+.||||.+++.+++. .++|+|+|+++.++.-|+.++..+++ |++|++|-
T Consensus       361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq  439 (534)
T KOG2187|consen  361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ  439 (534)
T ss_pred             hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence            45566667777777778888888899999999999999999875 66999999999999999999999999 99999995


Q ss_pred             ccC
Q 033605          105 IRN  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +++
T Consensus       440 aE~  442 (534)
T KOG2187|consen  440 AED  442 (534)
T ss_pred             hhh
Confidence            554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.24  E-value=7.3e-11  Score=81.30  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc--CCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR--NLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~--~~~~~~  112 (115)
                      ..++..+...++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.++..... ..+++++++|+.  .+++++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH-YKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc-CCceEEEEecccccccCCCC
Confidence            344444444466799999999999999999764 4999999999999887654322 227899999986  355553

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=9e-11  Score=80.31  Aligned_cols=65  Identities=22%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++...+. +++++++|+..++
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~  314 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS  314 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc
Confidence            4457789999999999999888853  245999999999999999999998887 7999999998765

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.23  E-value=9.4e-11  Score=80.20  Aligned_cols=66  Identities=27%  Similarity=0.351  Sum_probs=57.0

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      .+...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++...+. +++++++|+.++
T Consensus       245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~  313 (444)
T PRK14902        245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV  313 (444)
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence            334457789999999999999999864  356999999999999999999998887 799999999775

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.23  E-value=5.4e-11  Score=73.42  Aligned_cols=75  Identities=29%  Similarity=0.465  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhcCCC--CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc-cCCc
Q 033605           33 ASRMLYTAENSFGDV--SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI-RNLE  109 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~--~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~  109 (115)
                      ...+.+..++.+..+  ++.-|||||||+|..+..+...+. ..+|+|||+.|++.|.+.--+    -.++.+|+ +.+|
T Consensus        33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~Glp  107 (270)
T KOG1541|consen   33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE----GDLILCDMGEGLP  107 (270)
T ss_pred             hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh----cCeeeeecCCCCC
Confidence            333444444433333  466899999999999999987765 899999999999999974332    24666665 5666


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      |++
T Consensus       108 frp  110 (270)
T KOG1541|consen  108 FRP  110 (270)
T ss_pred             CCC
Confidence            665

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.23  E-value=1.1e-10  Score=79.54  Aligned_cols=67  Identities=28%  Similarity=0.290  Sum_probs=57.4

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++....+.+++++++|+.+++
T Consensus       239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~  306 (427)
T PRK10901        239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA  306 (427)
T ss_pred             HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch
Confidence            4455678899999999999999998653 369999999999999999999988877889999997653

>PRK04148 hypothetical protein; Provisional

Probab=99.23  E-value=1.6e-10  Score=66.63  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      +.+.+.+.++..++.++||+|||+|. .+..+++.+. +|+++|+++.+++.++++.      ++++.+|+.+-++
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC------CeEEECcCCCCCH
Confidence            34455566655567899999999996 7777877765 9999999999998887763      5788888766443

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.20  E-value=3.4e-10  Score=70.63  Aligned_cols=71  Identities=28%  Similarity=0.505  Sum_probs=56.5

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .......++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++.. ...++.++.+|+.+.++++
T Consensus        32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~  104 (223)
T TIGR01934        32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFED  104 (223)
T ss_pred             HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCC
Confidence            3333444778999999999999999986543  589999999999999998876 3337899999998877643

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02672 methionine S-methyltransferase

Probab=99.20  E-value=1.3e-10  Score=85.67  Aligned_cols=82  Identities=22%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             CCCchhhHHHHHHHHHHhcCC--CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccC-------
Q 033605           26 YPTGPHIASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-------   95 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-------   95 (115)
                      ...|+..++.+++. +...+.  .++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|...++       
T Consensus        95 VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~  173 (1082)
T PLN02672         95 IFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP  173 (1082)
T ss_pred             cccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence            55677788888877 333221  13568999999999999999964 45699999999999999999987642       


Q ss_pred             ---------C-ceeEEEccccCC
Q 033605           96 ---------L-DIDFVQCDIRNL  108 (115)
Q Consensus        96 ---------~-~v~~~~~d~~~~  108 (115)
                               . +++++++|+.+.
T Consensus       174 ~~~~~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        174 VYDGEGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             ccccccccccccEEEEECchhhh
Confidence                     1 689999998653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.20  E-value=1.5e-10  Score=78.92  Aligned_cols=66  Identities=23%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ....++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...+. +++++++|+..++
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~  301 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT  301 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh
Confidence            34557789999999999999999864  346999999999999999999998887 7899999988765

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.20  E-value=5.6e-11  Score=70.82  Aligned_cols=58  Identities=40%  Similarity=0.484  Sum_probs=48.9

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .+|+|+.||.|..++.+|+. ..+|+++|+++..+..++.|+.-+|.  +++++++|+.++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~   60 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL   60 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred             CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence            37999999999999999987 44999999999999999999999987  899999998654

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.20  E-value=1e-10  Score=70.99  Aligned_cols=61  Identities=23%  Similarity=0.351  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC-Cc-ccCCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-LE-WRGKY  114 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~f  114 (115)
                      ++.+|||+|||.|.+...+.+.......|+|++++.+..|.++      .+.++++|+++ ++ +++..
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~s   75 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQS   75 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCCC
Confidence            7789999999999999999875567999999999998887765      36788998853 32 55443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.20  E-value=1.5e-10  Score=70.53  Aligned_cols=77  Identities=22%  Similarity=0.388  Sum_probs=59.3

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d  104 (115)
                      ++...+.+.++..+...  ..++.++||+.||+|.++++++.+++.+|+.||.++.++...++|+...+.  +++++.+|
T Consensus        23 PT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d  100 (183)
T PF03602_consen   23 PTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD  100 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred             CCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence            44555556666655543  147899999999999999999999999999999999999999999998887  58888888


Q ss_pred             c
Q 033605          105 I  105 (115)
Q Consensus       105 ~  105 (115)
                      +
T Consensus       101 ~  101 (183)
T PF03602_consen  101 A  101 (183)
T ss_dssp             H
T ss_pred             H
Confidence            5

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2e-10  Score=74.08  Aligned_cols=69  Identities=19%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      .+.+++.++...+.+|||+|||.|.+++.+++. +..+++.+|++..+++.++++...++. +..++..|.
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~  217 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL  217 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc
Confidence            445566666666679999999999999999975 468999999999999999999998877 445555554

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.19  E-value=1.4e-10  Score=83.19  Aligned_cols=60  Identities=27%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++|+..++.   +++++++|+.+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~  600 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA  600 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH
Confidence            5789999999999999999987777899999999999999999988765   58999999754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.18  E-value=1.7e-10  Score=72.25  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh-------------ccCCcee
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------------DLELDID   99 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~v~   99 (115)
                      ...+.+.+.. ....++.+||.+|||.|.-...+++.+. +|+|+|+|+.+++.+.+...             ..+.+++
T Consensus        29 np~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         29 NEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            3334444332 2334567999999999999999999877 79999999999999866321             1133799


Q ss_pred             EEEccccCCcc
Q 033605          100 FVQCDIRNLEW  110 (115)
Q Consensus       100 ~~~~d~~~~~~  110 (115)
                      ++++|+.+++.
T Consensus       107 ~~~gD~f~l~~  117 (226)
T PRK13256        107 IYVADIFNLPK  117 (226)
T ss_pred             EEEccCcCCCc
Confidence            99999998864

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.18  E-value=1.7e-10  Score=71.05  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=50.3

Q ss_pred             CeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           50 KVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ..+||||||.|.+...+|. ++...++|+|+....+..+..+....+. |+.++++|+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~   78 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE   78 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence            3999999999999999995 6678999999999999999999998888 99999999876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.18  E-value=2.3e-10  Score=71.66  Aligned_cols=63  Identities=30%  Similarity=0.460  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      ++.+|||+|||+|.++..+++.+. +++++|+++.++..++.+....+. ++.+.+.|+.+++.+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~  108 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK  108 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC
Confidence            578999999999999998887644 799999999999999998877766 689999998776643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.17  E-value=1.3e-10  Score=73.41  Aligned_cols=62  Identities=24%  Similarity=0.320  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|+.++.++..  +..+++++|+++++++.|++++...+.  +++++.+|+.+.
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~  132 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA  132 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence            46789999999999999888853  346999999999999999999998887  799999998653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=3.7e-10  Score=77.14  Aligned_cols=68  Identities=25%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ..+...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++....+. +++++++|+.+++
T Consensus       246 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~  316 (434)
T PRK14901        246 PLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL  316 (434)
T ss_pred             HHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc
Confidence            3345557889999999999999999864  235999999999999999999999888 8999999998765

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.16  E-value=3.8e-10  Score=69.42  Aligned_cols=54  Identities=26%  Similarity=0.359  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|.++..+++.....++|+|+++.++..++++      +++++++|+.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~   66 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDE   66 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhh
Confidence            5679999999999999988765455889999999999988652      46788888865

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.15  E-value=2.5e-10  Score=74.09  Aligned_cols=73  Identities=21%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++.+++.+...++.++||.+||.|..+..+++..  ..+|+|+|.++.+++.++++... ..+++++++|+.++.
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~   81 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK   81 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence            44555566555677899999999999999999753  36999999999999999998766 338999999987653

>PLN03075 nicotianamine synthase; Provisional

Probab=99.15  E-value=8.6e-10  Score=71.46  Aligned_cols=65  Identities=20%  Similarity=0.195  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHH-HH-h-cCCCeEEEEeCChhHHHHHHHHhhc-cCC--ceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAA-AT-L-LGADQVIAIDIDSDSLELASENAAD-LEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~-~~-~-~~~~~v~~vD~s~~~~~~a~~~~~~-~~~--~v~~~~~d~~~~~  109 (115)
                      ....+++|+|+|||.|.++.. ++ . .+..+++|+|+++++++.|++.+.. .+.  +++|.++|+.+.+
T Consensus       120 ~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~  190 (296)
T PLN03075        120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT  190 (296)
T ss_pred             hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence            334788999999998855333 33 3 3556899999999999999999854 454  6999999998754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.15  E-value=3.4e-10  Score=72.73  Aligned_cols=65  Identities=12%  Similarity=0.144  Sum_probs=56.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ...++.+|||+|||+|..+..+++.  +...|+++|+++.+++.+++++...+. ++++++.|+..++
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~  135 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG  135 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh
Confidence            4457789999999999999998863  235899999999999999999998887 8999999987654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.14  E-value=3.1e-12  Score=70.57  Aligned_cols=51  Identities=29%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             EEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEc
Q 033605           53 ADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQC  103 (115)
Q Consensus        53 LDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~  103 (115)
                      ||+|||+|.++..+++. +..+++|+|+|+.|++.++++...... +...+..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~   53 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRF   53 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEe
Confidence            79999999999999864 567999999999999888888877664 3333333

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.11  E-value=1.4e-09  Score=74.34  Aligned_cols=65  Identities=26%  Similarity=0.386  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCChHHHHHHhcC-----CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           49 NKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      +..|+|+|||+|-++...++.+     ..+|++||.++.+...+++++..++.  +|+++++|++++.++++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCc
Confidence            5789999999999988776543     57999999999999888777555554  89999999999998864

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.09  E-value=5.2e-10  Score=69.61  Aligned_cols=61  Identities=26%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           38 YTAENSFG-DVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        38 ~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ..+...+. ..++.+|||+|||+|.++..+++..  ...|+|+|+++ |.        .. .+++++++|+.+.
T Consensus        40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~-~~v~~i~~D~~~~  103 (209)
T PRK11188         40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PI-VGVDFLQGDFRDE  103 (209)
T ss_pred             HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CC-CCcEEEecCCCCh
Confidence            33444444 3567799999999999999998652  35999999998 21        01 1678888888774

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.08  E-value=6.3e-10  Score=69.81  Aligned_cols=60  Identities=17%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ....+||||||.|.+...+|+ .+...++|||+....+..|.+.+.+.++ |+.++++|+..
T Consensus        48 ~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~  109 (227)
T COG0220          48 NAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE  109 (227)
T ss_pred             CCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            346899999999999999995 5678999999999999999999999999 99999999854

>PRK04457 spermidine synthase; Provisional

Probab=99.08  E-value=4.8e-10  Score=71.93  Aligned_cols=61  Identities=16%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|.++..+++ .+..+++++|+++++++.|++++...+  .+++++.+|+.+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~  128 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE  128 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence            3567999999999999999885 456799999999999999999876443  379999999754

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.06  E-value=7.5e-10  Score=68.61  Aligned_cols=72  Identities=21%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .-+++..++..   .++.+|||+||++|+.++.+++. + ..+|+.+|++++..+.|++++...+.  +++++.+|+.+
T Consensus        33 ~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~  108 (205)
T PF01596_consen   33 TGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE  108 (205)
T ss_dssp             HHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred             HHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence            33445544443   37789999999999999999963 3 46999999999999999999998877  89999999854

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=99.06  E-value=2.2e-09  Score=67.44  Aligned_cols=53  Identities=30%  Similarity=0.402  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHH
Q 033605           34 SRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL   86 (115)
Q Consensus        34 ~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~   86 (115)
                      ...+..+++.++. .++.++||+|||+|.++..+++.+..+|+|+|+++.|+..
T Consensus        60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3344455555443 4677999999999999999998877899999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.05  E-value=2.1e-09  Score=73.31  Aligned_cols=69  Identities=22%  Similarity=0.184  Sum_probs=54.9

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCc--eeEEEccccCCc
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIRNLE  109 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~--v~~~~~d~~~~~  109 (115)
                      ...+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...+.+  +.+..+|....+
T Consensus       231 ~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       231 ATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS  302 (426)
T ss_pred             HHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence            33445567889999999999999999864 4469999999999999999999988774  444667765543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.04  E-value=1.9e-09  Score=69.28  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCCCCh----HHHHHHhc-C-----CCeEEEEeCChhHHHHHHHHhhc-----------------------
Q 033605           47 VSNKVVADFGCGCGT----LGAAATLL-G-----ADQVIAIDIDSDSLELASENAAD-----------------------   93 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~----~~~~~~~~-~-----~~~v~~vD~s~~~~~~a~~~~~~-----------------------   93 (115)
                      .++.+|||+|||+|.    +++.+++. +     ..+|+|+|+|+.|++.|++..-.                       
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            356799999999997    34444432 1     24899999999999999985310                       


Q ss_pred             -----cCCceeEEEccccCCccc
Q 033605           94 -----LELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        94 -----~~~~v~~~~~d~~~~~~~  111 (115)
                           ...+|.|.++|+.+.+++
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~  200 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPP  200 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCc
Confidence                 001689999999987764

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.03  E-value=1e-09  Score=67.26  Aligned_cols=63  Identities=25%  Similarity=0.337  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-cee-EEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DID-FVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~-~~~~d~~~~~  109 (115)
                      ....-|||+|||+|..-...--.+..+||++|+++.|-+.+.+.+.+..- ++. |+.++.+++|
T Consensus        75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~  139 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP  139 (252)
T ss_pred             cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc
Confidence            33446899999999987766544567999999999999999999887654 787 9999999998

>PRK00811 spermidine synthase; Provisional

Probab=99.03  E-value=1.1e-09  Score=71.04  Aligned_cols=61  Identities=16%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc------CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~v~~~~~d~~~  107 (115)
                      .++.+||++|||.|..+.+++++ +..+|+++|+++.+++.|++.+...      ..+++++.+|+..
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~  142 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK  142 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH
Confidence            36789999999999999999876 4579999999999999999987642      2278999999765

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.01  E-value=2.5e-09  Score=70.27  Aligned_cols=55  Identities=22%  Similarity=0.195  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc-CC--ceeEEE
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQ  102 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~--~v~~~~  102 (115)
                      ++.++||||||+|.+...++. ....+++|+|+++.+++.|+.++..+ +.  +++++.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~  172 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRL  172 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEE
Confidence            457999999999988777764 44569999999999999999999988 45  677754

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.01  E-value=2.7e-09  Score=66.74  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-c-----------CC-cee
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-L-----------EL-DID   99 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-----------~~-~v~   99 (115)
                      ...+.+.+.. ....++.+||.+|||.|.-...+++.+. +|+|+|+|+.+++.+.+.... .           .. +|+
T Consensus        23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  100 (218)
T PF05724_consen   23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT  100 (218)
T ss_dssp             THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence            3333433333 3445667999999999999999998876 999999999999998443221 0           11 579


Q ss_pred             EEEccccCCccc
Q 033605          100 FVQCDIRNLEWR  111 (115)
Q Consensus       100 ~~~~d~~~~~~~  111 (115)
                      ++++|+.+++..
T Consensus       101 ~~~gDfF~l~~~  112 (218)
T PF05724_consen  101 IYCGDFFELPPE  112 (218)
T ss_dssp             EEES-TTTGGGS
T ss_pred             EEEcccccCChh
Confidence            999999887643

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.01  E-value=1.6e-09  Score=72.82  Aligned_cols=78  Identities=23%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHhcCCC-CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           31 HIASRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~-~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ...+.+...+.+.+... .+.+|||++||+|..++.++. .+..+|+++|+++.+++.+++|+..++. ++++.++|+..
T Consensus        39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~  118 (382)
T PRK04338         39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA  118 (382)
T ss_pred             cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence            33444444444433322 246899999999999999985 4556999999999999999999988877 67899999865


Q ss_pred             C
Q 033605          108 L  108 (115)
Q Consensus       108 ~  108 (115)
                      +
T Consensus       119 ~  119 (382)
T PRK04338        119 L  119 (382)
T ss_pred             H
Confidence            3

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.01  E-value=9.1e-09  Score=62.48  Aligned_cols=60  Identities=27%  Similarity=0.402  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      ..+.++||+.+|+|.++++.+..++..++.+|.+..++..+++|....+.  +++++..|+.
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~  103 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL  103 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence            58899999999999999999999999999999999999999999998884  8899988886

>PLN02476 O-methyltransferase

Probab=99.01  E-value=3.2e-09  Score=68.39  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .++++|||+|+|+|+.++.++.. + ..+++++|.++++.+.|++++...+.  +++++.+|+.+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e  181 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE  181 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            46789999999999999999863 2 45899999999999999999999888  79999999854

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.00  E-value=1.7e-09  Score=66.72  Aligned_cols=64  Identities=25%  Similarity=0.328  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      .++.+|+|+.||.|.+++.+++. ..+.|+++|++|.+++.+++++..++.  ++.++++|+.++..
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~  166 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP  166 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence            37889999999999999999973 456899999999999999999998887  68999999987754

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=4.8e-09  Score=66.13  Aligned_cols=77  Identities=21%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      -.-.+.......++.+|||.|.|+|.++..++. . +..+|+..|+.++.++.|++|+...+.  ++++..+|+.+.-.+
T Consensus        82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~  161 (256)
T COG2519          82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE  161 (256)
T ss_pred             CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence            344556666888999999999999999999995 3 337999999999999999999999777  499999998776655


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       162 ~  162 (256)
T COG2519         162 E  162 (256)
T ss_pred             c
Confidence            4

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.99  E-value=2.5e-09  Score=63.47  Aligned_cols=40  Identities=33%  Similarity=0.474  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHH
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL   86 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~   86 (115)
                      ..++.+|||+|||+|.++..++..+. +++|+|+++.+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh
Confidence            35788999999999999999987766 99999999999987

...

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.98  E-value=3.3e-09  Score=57.89  Aligned_cols=59  Identities=34%  Similarity=0.501  Sum_probs=48.1

Q ss_pred             eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      +++|+|||.|..+..++.....+++++|+++.++..+++....... ++.++.+|+.+.+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP   60 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence            5899999999999998875567999999999999998854433333 7889999887765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PTZ00146 fibrillarin; Provisional

Probab=98.97  E-value=5e-09  Score=67.78  Aligned_cols=63  Identities=21%  Similarity=0.118  Sum_probs=47.4

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           44 FGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +...++.+|||+|||+|.++..++.. + ...|+++|+++.+.+.....+... .|+.++.+|+..
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~  192 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARY  192 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccC
Confidence            34567889999999999999999975 2 358999999997664444443322 278888888754

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.96  E-value=1.1e-08  Score=63.49  Aligned_cols=82  Identities=18%  Similarity=0.295  Sum_probs=56.2

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhc-------cCC---
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAAD-------LEL---   96 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~---   96 (115)
                      ...+.....+..+++..+..++++++|||||.|.....++ ..+..+.+|||+.+...+.|+.....       .+.   
T Consensus        22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~  101 (205)
T PF08123_consen   22 TYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG  101 (205)
T ss_dssp             CGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred             ceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4456666777777777777788999999999999988877 56676799999999998777654332       232   


Q ss_pred             ceeEEEccccCCc
Q 033605           97 DIDFVQCDIRNLE  109 (115)
Q Consensus        97 ~v~~~~~d~~~~~  109 (115)
                      ++++.++|+.+.+
T Consensus       102 ~v~l~~gdfl~~~  114 (205)
T PF08123_consen  102 KVELIHGDFLDPD  114 (205)
T ss_dssp             EEEEECS-TTTHH
T ss_pred             cceeeccCccccH
Confidence            6888899987654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.96  E-value=5.3e-09  Score=64.97  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCC--CCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCCh
Q 033605            5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDS   81 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~   81 (115)
                      +++.+.+.+..|.. ..+.....+..+.-.+.+...+...+...  +.+++|||+|.|.-++.++ .++..+|+-+|...
T Consensus        23 ~l~~Y~~lL~~wN~-~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~  101 (215)
T COG0357          23 KLEAYVELLLKWNK-AYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG  101 (215)
T ss_pred             HHHHHHHHHHHhhH-hcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc
Confidence            44555555555554 33444444454444443333333333333  6899999999999999988 56666899999999


Q ss_pred             hHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           82 DSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        82 ~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ..+...+....+.+. |++++++.+|++....
T Consensus       102 Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~  133 (215)
T COG0357         102 KKIAFLREVKKELGLENVEIVHGRAEEFGQEK  133 (215)
T ss_pred             hHHHHHHHHHHHhCCCCeEEehhhHhhccccc
Confidence            999999999999999 7999999999887543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.96  E-value=1.9e-08  Score=63.95  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      -+..++......++.+|||.|.|+|.++..+++.  +..+|+..|+.+++++.|++++...+.  ++++.+.|+.+.-+
T Consensus        28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF  106 (247)
T ss_dssp             HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred             hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence            3445556667789999999999999999999963  456999999999999999999999887  79999999865333

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.94  E-value=2.2e-09  Score=66.34  Aligned_cols=76  Identities=30%  Similarity=0.377  Sum_probs=61.8

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      ++......+........   ....|+|..||.|..++.++..+. .|+++|++|.-+..|++|+.-+|+  +|+|++||+
T Consensus        77 Tpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~  152 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDF  152 (263)
T ss_pred             ccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechH
Confidence            45555555555544432   566899999999999998887755 999999999999999999999998  899999998


Q ss_pred             cC
Q 033605          106 RN  107 (115)
Q Consensus       106 ~~  107 (115)
                      .+
T Consensus       153 ld  154 (263)
T KOG2730|consen  153 LD  154 (263)
T ss_pred             HH
Confidence            64

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.92  E-value=5.5e-09  Score=61.15  Aligned_cols=57  Identities=26%  Similarity=0.346  Sum_probs=47.7

Q ss_pred             eEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           51 VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ++||+|||.|..+..+++... .+++++|+++.++..++++...++. ++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            589999999999999987543 4899999999999999999887765 67777766543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.92  E-value=8.9e-09  Score=63.06  Aligned_cols=54  Identities=24%  Similarity=0.361  Sum_probs=40.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ...++.+|||+|||+|.++..++..  +..+|+++|+++.+         .. .+++++++|+.+.
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~-~~i~~~~~d~~~~   84 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI-ENVDFIRGDFTDE   84 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC-CCceEEEeeCCCh
Confidence            3357889999999999999988853  34589999999965         01 1567777787653

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.91  E-value=2.3e-08  Score=62.36  Aligned_cols=73  Identities=21%  Similarity=0.250  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEE-ccc
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQ-CDI  105 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~-~d~  105 (115)
                      +.+-.++..+...   ..++++||+|++.|+.++.++. .+ ..+++++|+++++.+.|++++.+.+.  +++.+. +|+
T Consensus        45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda  121 (219)
T COG4122          45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA  121 (219)
T ss_pred             hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence            4444455544433   4788999999999999999995 34 46999999999999999999999988  577777 465


Q ss_pred             c
Q 033605          106 R  106 (115)
Q Consensus       106 ~  106 (115)
                      .
T Consensus       122 l  122 (219)
T COG4122         122 L  122 (219)
T ss_pred             H
Confidence            3

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.91  E-value=1.3e-09  Score=67.88  Aligned_cols=51  Identities=27%  Similarity=0.393  Sum_probs=40.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      ++.......-.++||+|||||..+..+-.. ..+++|+|||..|++.|.++-
T Consensus       117 mI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg  167 (287)
T COG4976         117 MIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG  167 (287)
T ss_pred             HHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc
Confidence            333334334579999999999999988655 458999999999999988753

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=8.3e-09  Score=68.08  Aligned_cols=64  Identities=25%  Similarity=0.333  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ++.+|+|..+|.|.+++.++.++...|+++|++|.+++.+++|+..++.  .++.++||+.+....
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~  253 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE  253 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence            6889999999999999999998776799999999999999999999888  489999999877655

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.89  E-value=1.3e-08  Score=59.66  Aligned_cols=61  Identities=31%  Similarity=0.402  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-----cCCCeEEEEeCChhHHHHHHHHhhccC--C--ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-----LGADQVIAIDIDSDSLELASENAADLE--L--DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~v~~~~~d~~~  107 (115)
                      .+..+|+|+|||.|+++..++.     ....+|+++|.++...+.+..+.....  .  ++.+..++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            5678999999999999999987     556799999999999999998887765  2  56666665543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.88  E-value=1.4e-08  Score=61.56  Aligned_cols=64  Identities=31%  Similarity=0.442  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ..+.+.|+|+|+|.+++..+.. +.+|+++|.+|.....|++|..-.+. |++++.+|+.++.|+.
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~   96 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFEN   96 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccc
Confidence            4479999999999999998877 66999999999999999999877777 9999999999999853

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.88  E-value=3e-08  Score=60.08  Aligned_cols=61  Identities=30%  Similarity=0.325  Sum_probs=44.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccC----CceeEEEccccC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE----LDIDFVQCDIRN  107 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~  107 (115)
                      ..++.+|||||||+|..++.++.. +..+|+..|.++ .++.++.|+..++    .++.+...|..+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~  108 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD  108 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence            457889999999999999999976 677999999999 9999999988765    277777777644

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=68.30  Aligned_cols=78  Identities=28%  Similarity=0.290  Sum_probs=62.8

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEcc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCD  104 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d  104 (115)
                      +......+..+..+...  .++++|||+.|=||.++++++..++.+||+||+|..+++.|++|..-++.   ++.++++|
T Consensus       199 TGfFlDqR~~R~~l~~~--~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D  276 (393)
T COG1092         199 TGFFLDQRDNRRALGEL--AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD  276 (393)
T ss_pred             ceeeHHhHHHHHHHhhh--ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh
Confidence            33344444444444432  25899999999999999999998888999999999999999999998886   58999999


Q ss_pred             ccC
Q 033605          105 IRN  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +.+
T Consensus       277 vf~  279 (393)
T COG1092         277 VFK  279 (393)
T ss_pred             HHH
Confidence            743

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.85  E-value=3.7e-08  Score=70.98  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             CchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhc-------------------------------------
Q 033605           28 TGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-------------------------------------   69 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~-------------------------------------   69 (115)
                      .+....+.+...++....- .++..++|.+||+|.+.++.+..                                     
T Consensus       169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~  248 (702)
T PRK11783        169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA  248 (702)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            3334445555555544332 35679999999999999887641                                     


Q ss_pred             ------CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           70 ------GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        70 ------~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                            ...+++|+|+++.++..|+.|+...+.  .+++.++|+.+++.+
T Consensus       249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~  298 (702)
T PRK11783        249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP  298 (702)
T ss_pred             hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc
Confidence                  012699999999999999999999887  589999999887654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.85  E-value=4.3e-08  Score=65.33  Aligned_cols=89  Identities=25%  Similarity=0.264  Sum_probs=68.1

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--C----------------------------
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--D----------------------------   72 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~----------------------------   72 (115)
                      |..+..+.+.-+.+...++....-.++..++|.-||+|.+.++.+....  +                            
T Consensus       166 yR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~  245 (381)
T COG0116         166 YRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE  245 (381)
T ss_pred             ccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence            3334445555555666666554545667999999999999999885321  1                            


Q ss_pred             ----------eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           73 ----------QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        73 ----------~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                                .++|+|+++.+++.|+.|+...+.  .|+|.++|+..++-+
T Consensus       246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~  296 (381)
T COG0116         246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP  296 (381)
T ss_pred             HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC
Confidence                      377999999999999999999988  699999999887755

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.84  E-value=1.5e-08  Score=66.96  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-----------CCceeEEEccccCCcc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRNLEW  110 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~v~~~~~d~~~~~~  110 (115)
                      ++.+|||+|||.|.-.......+...++|+|+++..++.|+++....           .....++.+|.....+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l  135 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL  135 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchh
Confidence            66899999999999777777666789999999999999999998211           1256778888765443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.83  E-value=2.5e-08  Score=60.86  Aligned_cols=103  Identities=19%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             chhhhhhhhcccCCCCccccccCCCchhhHHH-HHHHHHHhcCCCCCC-eEEEEcCCCChHHHHHH-hcCCCeEEEEeCC
Q 033605            4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASR-MLYTAENSFGDVSNK-VVADFGCGCGTLGAAAT-LLGADQVIAIDID   80 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s   80 (115)
                      ..++.+.+.+..|.. ..+..........-.+ +++.+.-..-..... +++|+|+|.|.-++.++ -.+..+++.+|..
T Consensus         3 ~~l~~y~~lL~~~N~-~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~   81 (184)
T PF02527_consen    3 EKLEQYLELLLEWNK-KINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV   81 (184)
T ss_dssp             HHHHHHHHHHHHHHH-CSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred             HHHHHHHHHHHHhCc-eeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence            345555555555543 3333334444444433 334433222222223 79999999999999988 4667799999999


Q ss_pred             hhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           81 SDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        81 ~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ...+...+......+. |++++++.+++
T Consensus        82 ~KK~~FL~~~~~~L~L~nv~v~~~R~E~  109 (184)
T PF02527_consen   82 GKKVAFLKEVVRELGLSNVEVINGRAEE  109 (184)
T ss_dssp             HHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred             chHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence            9999999999999998 89999999988

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=3.6e-08  Score=59.42  Aligned_cols=60  Identities=25%  Similarity=0.426  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      ..+..++|+|||+|..+..+++.  +...+.++|++|.+++..++-+..++.+++.++.|+.
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~  103 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL  103 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH
Confidence            35789999999999999988853  4568899999999999988888888878888888763

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.82  E-value=2.5e-08  Score=63.43  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .++.+|||+|+++|+.++.++..  ...+++++|.+++..+.|++++...+.  +++++.+|+.+
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            46789999999999999999863  246999999999999999999998886  89999998755

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.82  E-value=4.8e-08  Score=63.32  Aligned_cols=74  Identities=28%  Similarity=0.292  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      ...+..+..+...  .++++|||+.|-+|.+++.++..++.+|++||.|..+++.+++|...++.   ++++++.|+.+
T Consensus       109 lDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~  185 (286)
T PF10672_consen  109 LDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK  185 (286)
T ss_dssp             GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred             HHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence            3344444444332  36789999999999999998888788999999999999999999988875   78999999754

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02366 spermidine synthase

Probab=98.81  E-value=2.2e-08  Score=65.60  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~  107 (115)
                      .++.+||++|||.|....++++++ ..+|+.+|+++.+++.|++.+...     +.+++++.+|+..
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~  156 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE  156 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence            467899999999999999999874 468999999999999999987542     2279999999643

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.79  E-value=4.7e-08  Score=65.62  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      +.+|||+.||+|..++.++..  +..+|+++|+++.+++.+++|+..++. +++++++|+..+
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~  107 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV  107 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH
Confidence            358999999999999999965  567999999999999999999988877 688999887644

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK03612 spermidine synthase; Provisional

Probab=98.77  E-value=2.4e-08  Score=69.73  Aligned_cols=61  Identities=25%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHh--hc-----cC-CceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENA--AD-----LE-LDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~--~~-----~~-~~v~~~~~d~~~  107 (115)
                      .++++|||+|||+|..+.++++++. .+++++|+++++++.++++.  ..     .. .+++++.+|+.+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~  365 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN  365 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence            4678999999999999999988754 79999999999999999842  21     11 278999999865

>PRK01581 speE spermidine synthase; Validated

Probab=98.73  E-value=3.5e-08  Score=65.66  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHh--h-----cc-CCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENA--A-----DL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~--~-----~~-~~~v~~~~~d~~~~  108 (115)
                      ..+.+||++|||.|..+..+++++ ..+|+++|+++++++.|++..  .     .. +.+++++.+|+.++
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f  219 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF  219 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH
Confidence            467799999999999998888764 479999999999999999621  1     11 22889999887653

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.72  E-value=1.4e-07  Score=61.92  Aligned_cols=85  Identities=25%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             cccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh--------cCCCeEEEEeCChhHHHHHHHHhh
Q 033605           21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--------LGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~--------~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ....+|.+|..+..-++..+    ...++.+|+|.+||+|.+...+.+        ....+++|+|+++.++..|+.++.
T Consensus        23 k~~G~~~TP~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   23 KKLGQFYTPREIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             TSCGGC---HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             cccceeehHHHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            34557888988887777665    334677899999999999888775        245699999999999999988776


Q ss_pred             ccCC---ceeEEEccccCCc
Q 033605           93 DLEL---DIDFVQCDIRNLE  109 (115)
Q Consensus        93 ~~~~---~v~~~~~d~~~~~  109 (115)
                      -.+.   +..+.++|....+
T Consensus        99 l~~~~~~~~~i~~~d~l~~~  118 (311)
T PF02384_consen   99 LHGIDNSNINIIQGDSLEND  118 (311)
T ss_dssp             HTTHHCBGCEEEES-TTTSH
T ss_pred             hhcccccccccccccccccc
Confidence            5554   3457888865444

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.72  E-value=7.5e-08  Score=67.36  Aligned_cols=83  Identities=25%  Similarity=0.324  Sum_probs=62.1

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCC---CCCCeEEEEcCCCChHHHHHHhcC---------CCeEEEEeCChhHHHHHHHH
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATLLG---------ADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDlG~G~G~~~~~~~~~~---------~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ..+|.+|..+...+++.+......   ....+|||+|||+|.+...++...         ..+++|+|+++.++..++.+
T Consensus         3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987         3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            457889999999999887654321   145689999999999998887421         14789999999999999998


Q ss_pred             hhccCC-ceeEEEccc
Q 033605           91 AADLEL-DIDFVQCDI  105 (115)
Q Consensus        91 ~~~~~~-~v~~~~~d~  105 (115)
                      +...+. .+.+.+.|.
T Consensus        83 l~~~~~~~~~i~~~d~   98 (524)
T TIGR02987        83 LGEFALLEINVINFNS   98 (524)
T ss_pred             HhhcCCCCceeeeccc
Confidence            776552 445555553

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=2.9e-08  Score=62.21  Aligned_cols=85  Identities=15%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C--CCeEEEEeCChhHHHHHHHHhhccCCcee
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLELDID   99 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~   99 (115)
                      .+++...+++..+-...+...... .+.+|||+|||.|.....+.+. +  .-.++++|.||.+++..+++......++.
T Consensus        47 ~~rFfkdR~wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~  125 (264)
T KOG2361|consen   47 ENRFFKDRNWLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVE  125 (264)
T ss_pred             cccccchhHHHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhc
Confidence            344566666666666655544222 2338999999999999998853 2  25899999999999999998776555565


Q ss_pred             EEEccccCC
Q 033605          100 FVQCDIRNL  108 (115)
Q Consensus       100 ~~~~d~~~~  108 (115)
                      ....|+..-
T Consensus       126 afv~Dlt~~  134 (264)
T KOG2361|consen  126 AFVWDLTSP  134 (264)
T ss_pred             ccceeccch
Confidence            555665443

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.71  E-value=4.3e-08  Score=58.36  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.......++..|||+|.|+|-++..+++++  ...++++|+|++......+....    +.++.||+.++.
T Consensus        40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~----~~ii~gda~~l~  107 (194)
T COG3963          40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----VNIINGDAFDLR  107 (194)
T ss_pred             HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC----ccccccchhhHH
Confidence            3333345578899999999999999999764  46999999999999999887764    557888876655

>TIGR00417 speE spermidine synthase

Probab=98.67  E-value=1.3e-07  Score=61.06  Aligned_cols=60  Identities=22%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccC-----CceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~  106 (115)
                      .++.+||++|||+|..+..+++.. ..+++++|+++.+++.+++.+...+     .+++++.+|+.
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~  136 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF  136 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence            356699999999999999888764 5689999999999999999765421     26777777764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.65  E-value=5.9e-08  Score=60.88  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      .++|+|||+|..++.++.+ ..+|+|+|+|+.|++.+++....
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~   77 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPV   77 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCc
Confidence            8999999999878888777 55999999999999999886654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.62  E-value=9.9e-08  Score=60.00  Aligned_cols=48  Identities=23%  Similarity=0.390  Sum_probs=43.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ..+.-+|||||.+|.++..+++ +++..++|+||++..++.|++.....
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            4678899999999999999996 67789999999999999999987754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.60  E-value=1.9e-07  Score=65.13  Aligned_cols=59  Identities=12%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      ....+||||||.|.+...+|. ++...++|+|+....+..+.......+. |+.++++|++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~  407 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD  407 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            467899999999999999995 5668999999999999998888877777 8988888874

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.60  E-value=8.1e-07  Score=56.39  Aligned_cols=68  Identities=22%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ..+..........+|+|||+|.|.++..+++ ++..+++..|. |..++.+++     ..+++++.+|+. -++|.
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~  158 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV  158 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc
Confidence            3445555555667999999999999999995 67789999999 778888888     228999999997 45553

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.56  E-value=1.2e-07  Score=57.82  Aligned_cols=72  Identities=31%  Similarity=0.341  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +.+.+..+-...++++|||+|+|+|..++..++.+.+.|++.|+.|-.....+-|...++.++.++..|...
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g  138 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG  138 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC
Confidence            344455554455789999999999999999999999999999999999999999998888889998888765

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.56  E-value=6.1e-07  Score=58.68  Aligned_cols=73  Identities=21%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++.+++.+...++..++|.-+|.|..+..+++. +..+|+|+|.++.++..++++...++.+++++++++.++
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l   81 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF   81 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence            4455555555567789999999999999999964 347999999999999999998876655899999887764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.55  E-value=7.8e-07  Score=61.44  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=55.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ...++.+|||+++|.|.-+..++..  +...++++|+++.+++.+++++...+. ++.+.+.|...+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~  176 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF  176 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence            3457889999999999999999863  345899999999999999999999998 889998988765

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.48  E-value=3.2e-06  Score=54.70  Aligned_cols=62  Identities=23%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cC--CCeEEEEeCChhHHHHHHHHhhccCC-ce-eEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v-~~~~~d~~~~  108 (115)
                      ..+-+|||+.||.|+..+.+.. .+  ..+|...|+|+..++..++...+.+. ++ +|.++|+.+.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            4678999999999999988874 43  36999999999999999999999998 55 9999998653

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.46  E-value=2.8e-07  Score=60.18  Aligned_cols=60  Identities=27%  Similarity=0.317  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-------ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~  107 (115)
                      +++.++|+|||.|.-.+..-..+...++|+||++..++.|+++...-..       .+.|+.+|...
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            6778999999999988888777778999999999999999998764321       47888888754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.46  E-value=1.1e-06  Score=56.93  Aligned_cols=69  Identities=26%  Similarity=0.252  Sum_probs=53.5

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      +.......+++..+....+...+.+|||+|||+|.....+.. . ...+++++|.|+.|++.++.......
T Consensus        12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~   82 (274)
T PF09243_consen   12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP   82 (274)
T ss_pred             hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence            334455667777777777777899999999999987766654 2 34699999999999999988776543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11524 putative methyltransferase; Provisional

Probab=98.42  E-value=1.8e-06  Score=56.21  Aligned_cols=59  Identities=22%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      ...+++.++.... .+++.|||..||+|..+....+.+. +.+|+|++++.++.|++++..
T Consensus       194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            3456666665533 4889999999999999998888766 999999999999999999753

>PLN02823 spermine synthase

Probab=98.42  E-value=1.1e-06  Score=58.32  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~  107 (115)
                      .+.+||.+|+|.|..+.+++++ +..+++++|+++.+++.|++.+...     +.+++++.+|+..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~  168 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA  168 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH
Confidence            5679999999999999998875 4579999999999999999987543     2278888888754

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=7.3e-07  Score=52.29  Aligned_cols=81  Identities=14%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .+.+.++.++..++..+..+.+|+|+|.|+.....++.+.-+-+|+|++|-.+..++-..-..++  ...|...|+.+.+
T Consensus        56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d  135 (199)
T KOG4058|consen   56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD  135 (199)
T ss_pred             ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence            34555666677767777789999999999999999988766889999999988888776666655  6778887877776


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +.+
T Consensus       136 l~d  138 (199)
T KOG4058|consen  136 LRD  138 (199)
T ss_pred             ccc
Confidence            654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=98.37  E-value=2.1e-06  Score=53.64  Aligned_cols=54  Identities=28%  Similarity=0.333  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ..+++.++.... .+++.|||..||+|..+....+.+. +.+|+|+++..++.|++
T Consensus       178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            344444444433 3788999999999999999888766 89999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.35  E-value=3.4e-06  Score=52.43  Aligned_cols=55  Identities=36%  Similarity=0.370  Sum_probs=47.1

Q ss_pred             EEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           52 VADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        52 vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      |.|+||--|++..++.+.+. .+++++|+++.-++.|++++...+.  +++++.+|-.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL   58 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL   58 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc
Confidence            68999999999999997654 5899999999999999999999886  7999999954

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.34  E-value=6.3e-06  Score=54.43  Aligned_cols=71  Identities=10%  Similarity=0.059  Sum_probs=50.8

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-----CCCeEEEEeCChhHHHHHHHHhh-c-cC-CceeEEEcccc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAA-D-LE-LDIDFVQCDIR  106 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~~-~-~~-~~v~~~~~d~~  106 (115)
                      .....+...+  .++..++|+|||+|.-+..+++.     ....++++|+|.++++.+..++. . .+ +.+.-+++|+.
T Consensus        65 ~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~  142 (319)
T TIGR03439        65 KHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD  142 (319)
T ss_pred             HHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence            3344455443  35668999999999987766531     13579999999999999999888 2 33 25666888874


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      +
T Consensus       143 ~  143 (319)
T TIGR03439       143 D  143 (319)
T ss_pred             H
Confidence            4

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PHA01634 hypothetical protein

Probab=98.34  E-value=2.1e-06  Score=49.10  Aligned_cols=48  Identities=19%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      ++++|+|+|.+.|..+++++-.++++|+++|+++...+..+++...+.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            788999999999999999998899999999999999999999877653

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.32  E-value=3.8e-06  Score=52.12  Aligned_cols=82  Identities=29%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             hcccCCCCccccccCC---CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHH
Q 033605           12 DLEQFSNPKVELEQYP---TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLE   85 (115)
Q Consensus        12 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~   85 (115)
                      +.+.|.....-++...   .|-.....+++..+.......+-++.|.+||.|++...+.-   ..-..|+|-|+++++++
T Consensus        12 ~y~DfAsG~VL~sApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~   91 (246)
T PF11599_consen   12 DYEDFASGRVLYSAPGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE   91 (246)
T ss_dssp             --CCCSTTTSS--BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred             ChhhhcCCeEEecCCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence            4444544444433322   23455677777777776666778999999999998666552   23469999999999999


Q ss_pred             HHHHHhhc
Q 033605           86 LASENAAD   93 (115)
Q Consensus        86 ~a~~~~~~   93 (115)
                      .|++|..-
T Consensus        92 lA~kNL~L   99 (246)
T PF11599_consen   92 LARKNLSL   99 (246)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHhhhh
Confidence            99998754

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.31  E-value=1.7e-05  Score=52.61  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~   81 (115)
                      .++.++||+||++|.++..+++.+. +|++||..+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~  243 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP  243 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence            4788999999999999999999876 999999666

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.31  E-value=7.8e-06  Score=50.92  Aligned_cols=87  Identities=15%  Similarity=0.046  Sum_probs=53.9

Q ss_pred             CCCchhhHHHHHHHHHHhcCCC------CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ce
Q 033605           26 YPTGPHIASRMLYTAENSFGDV------SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DI   98 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~------~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v   98 (115)
                      |..-.....+-.+.++..+...      ...+.||.|+|.|+.+..++.....+|-.+|..+..++.|++....... -.
T Consensus        27 ~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~  106 (218)
T PF05891_consen   27 FGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVG  106 (218)
T ss_dssp             -GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEE
T ss_pred             CCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcc
Confidence            3333334444444444444332      3568999999999999988754467999999999999999987766332 46


Q ss_pred             eEEEccccCCcccC
Q 033605           99 DFVQCDIRNLEWRG  112 (115)
Q Consensus        99 ~~~~~d~~~~~~~~  112 (115)
                      ++.+..++++.+++
T Consensus       107 ~~~~~gLQ~f~P~~  120 (218)
T PF05891_consen  107 EFYCVGLQDFTPEE  120 (218)
T ss_dssp             EEEES-GGG----T
T ss_pred             eEEecCHhhccCCC
Confidence            78888888887653

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK13699 putative methylase; Provisional

Probab=98.26  E-value=7.8e-06  Score=51.63  Aligned_cols=60  Identities=23%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ...+++.++.... .+++.|||..||+|..+....+.+. +.+|+|++++..+.+.+++...
T Consensus       149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            3445555554433 3788999999999999998887755 8999999999999999987653

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1.7e-05  Score=50.95  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      .+...+...++.+|+|-|+|+|.++-.+++.  +-.+++..|+.....+.|.+-+.+-++  ++++.+-|+...-|.
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            3445556679999999999999999999863  446999999999999999999988777  899999888765543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1e-05  Score=50.12  Aligned_cols=77  Identities=21%  Similarity=0.203  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC--CCeEEEEeCChhHHHHHHHHhhccC-----------C
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLE-----------L   96 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----------~   96 (115)
                      +.....++.+...  ..++.++||+|+|+|+++..++. -+  ....+|||.-++.++.+++++...-           .
T Consensus        67 ~mha~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   67 HMHATALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             HHHHHHHHHHHHh--hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            3344455555443  34888999999999999888874 22  3345999999999999999877543           1


Q ss_pred             ceeEEEccccCCc
Q 033605           97 DIDFVQCDIRNLE  109 (115)
Q Consensus        97 ~v~~~~~d~~~~~  109 (115)
                      ++.++.+|.....
T Consensus       145 ~l~ivvGDgr~g~  157 (237)
T KOG1661|consen  145 ELSIVVGDGRKGY  157 (237)
T ss_pred             ceEEEeCCccccC
Confidence            6788888876543

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.23  E-value=4.3e-06  Score=54.81  Aligned_cols=74  Identities=23%  Similarity=0.316  Sum_probs=54.8

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++.+++.+...++..++|.--|.|..+..+++ .+..+++|+|-++.+++.++++...+..++.++++++.+++
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~   82 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD   82 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH
Confidence            344455555556788999999999999999995 45589999999999999999998877668999999887653

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.22  E-value=6e-06  Score=52.66  Aligned_cols=42  Identities=21%  Similarity=0.235  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +..++||||+|.|..+..++.. ..+|+++|+|+.|....+++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k  135 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK  135 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC
Confidence            5678999999999999999876 44899999999998887764

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=1.5e-05  Score=49.98  Aligned_cols=62  Identities=26%  Similarity=0.315  Sum_probs=52.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      +...++++||+|.=+|+.++.+|. .+ ..+|+++|+++...+.+.+.....+.  +++++++++.
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~  135 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL  135 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence            345788999999999999988884 32 46999999999999999998888887  8999998864

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.14  E-value=7.5e-06  Score=49.82  Aligned_cols=47  Identities=26%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             HHHHHHHhcC-CC--CCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChh
Q 033605           36 MLYTAENSFG-DV--SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSD   82 (115)
Q Consensus        36 ~~~~~~~~~~-~~--~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~   82 (115)
                      .+..+.+.++ ..  ++.++||+||++|.++..+++..  ...|+|+|+.+.
T Consensus         8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            4445555656 22  34899999999999999999875  579999999987

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.14  E-value=1.2e-05  Score=50.41  Aligned_cols=84  Identities=11%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +.-...++.+.++...+......|.++|.|.|.++..+.+.+.+....+|+++..+.-.+......+.+..+.++|+..+
T Consensus        31 NfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   31 NFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF  110 (326)
T ss_pred             hHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence            33445566677777777778889999999999999999988888999999999998888777666655888888998776


Q ss_pred             cccC
Q 033605          109 EWRG  112 (115)
Q Consensus       109 ~~~~  112 (115)
                      ...+
T Consensus       111 ~I~~  114 (326)
T KOG0821|consen  111 KIEK  114 (326)
T ss_pred             hHHh
Confidence            6543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.13  E-value=7.2e-06  Score=52.39  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~  106 (115)
                      ++.+||-+|.|.|..+.++++++ ..+++++|+++..++.|++.+...     +.+++++.+|+.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~  140 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR  140 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence            78899999999999999999875 579999999999999999976642     227888888864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=3.4e-05  Score=51.84  Aligned_cols=67  Identities=22%  Similarity=0.250  Sum_probs=55.9

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhcC---CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      .+...++.+|||++++.|.=+..+++..   ...|+++|+++..+...+++....|. |+..++.|...++
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~  221 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA  221 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence            3345678999999999999999998643   23569999999999999999999999 8888888876443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.12  E-value=1.7e-06  Score=54.35  Aligned_cols=63  Identities=30%  Similarity=0.266  Sum_probs=53.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      ...++.+|||.+.|-|+.++..++.++.+|+.+|.+|..++.|+-|.=..+.   .++++.||+.+
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e  196 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE  196 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence            4457899999999999999999999888999999999999998877544433   67999998743

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.10  E-value=1.4e-05  Score=52.29  Aligned_cols=56  Identities=29%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             CCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhcc-CC--ceeEEEcc
Q 033605           49 NKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCD  104 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~--~v~~~~~d  104 (115)
                      ..++||||+|...+-..+. +....+++|+|+++..++.|++++..+ ++  +|+++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~  162 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQK  162 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence            4589999999887644443 433679999999999999999999988 55  68887653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.09  E-value=1.8e-05  Score=51.51  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccC----C-ceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE----L-DIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~-~v~~~~~d~~  106 (115)
                      .+++||-+|.|.|..+.+++++. ..+++.+||++..++.|++.+....    . +++++.+|..
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~  140 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV  140 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH
Confidence            44699999999999999999865 5799999999999999999887654    2 7788888764

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=98.08  E-value=1.2e-05  Score=54.92  Aligned_cols=55  Identities=27%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      .|||+|+|||.+++..++.++..|+++|.-..|.+.|++....++.  ++.++..--
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS  125 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS  125 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence            5899999999999999998888999999999999999999998887  677766433

>PRK10742 putative methyltransferase; Provisional

Probab=98.08  E-value=2.7e-05  Score=49.61  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             HHHHHhcCCCCCC--eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc------C----CceeEEEccc
Q 033605           38 YTAENSFGDVSNK--VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------E----LDIDFVQCDI  105 (115)
Q Consensus        38 ~~~~~~~~~~~~~--~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~----~~v~~~~~d~  105 (115)
                      +.+.+.....++.  +|||+-+|+|..++.++..++ +|+++|-++......+.+....      +    .+++++++|.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            3444554545555  899999999999999999877 6999999999998888887763      2    1688888887


Q ss_pred             cCC
Q 033605          106 RNL  108 (115)
Q Consensus       106 ~~~  108 (115)
                      .++
T Consensus       155 ~~~  157 (250)
T PRK10742        155 LTA  157 (250)
T ss_pred             HHH
Confidence            543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.04  E-value=3.2e-05  Score=49.21  Aligned_cols=64  Identities=27%  Similarity=0.234  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      .+.+|+|||||.==+++.... .+...++|.||+..+++.........+.+.++...|...-+.+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~  169 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPK  169 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCC
Confidence            478999999998888877664 3456999999999999999999988888888888887665443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.04  E-value=8.2e-05  Score=48.55  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ...++.+|||+++|.|.-+..+++.  +...+++.|+++..+...+.+....+. ++.....|....
T Consensus        82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~  148 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL  148 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH
T ss_pred             cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc
Confidence            4457889999999999999998863  357999999999999999999999998 888887776654

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.03  E-value=6e-05  Score=49.13  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++..++.+...++...+|.--|.|..+..+++. + ..+++|+|-++.+++.|+++...++.++.+++..+.++.
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~   86 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA   86 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence            4555556666668889999999999999999964 3 357999999999999999999888879999998876543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.98  E-value=4.2e-05  Score=48.27  Aligned_cols=78  Identities=18%  Similarity=0.298  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ...++.+.+.+..+  .-..++|+|||.|.....+...+..+++-+|-|-.|++.++..- ..++.+....+|-+.++|.
T Consensus        58 ig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~  134 (325)
T KOG2940|consen   58 IGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFK  134 (325)
T ss_pred             HHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhccccc
Confidence            34445555544422  34589999999999999998777789999999999999987642 2333677788888888876


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       135 e  135 (325)
T KOG2940|consen  135 E  135 (325)
T ss_pred             c
Confidence            5

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.98  E-value=3.1e-05  Score=47.88  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccC-------C-ceeEEEccc
Q 033605           48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDI  105 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~-~v~~~~~d~  105 (115)
                      +.-.+.|||||-|.+.+.++ .++..-++|+||-....+..+.++.+..       . |+.++..++
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na  126 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA  126 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc
Confidence            44579999999999999999 5677899999999999888888877654       2 455555544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=2.1e-05  Score=48.66  Aligned_cols=70  Identities=23%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             hhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           30 PHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      ...+...+..+.+.+.. .++.+|+|||+-.|.++..+++...  ..|+|+|+.|.-.-          .+|.++++|+.
T Consensus        26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----------~~V~~iq~d~~   95 (205)
T COG0293          26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----------PGVIFLQGDIT   95 (205)
T ss_pred             cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----------CCceEEeeecc
Confidence            33444444455555554 4568999999999999999996432  35999999984211          15788888876


Q ss_pred             CCc
Q 033605          107 NLE  109 (115)
Q Consensus       107 ~~~  109 (115)
                      .-+
T Consensus        96 ~~~   98 (205)
T COG0293          96 DED   98 (205)
T ss_pred             Ccc
Confidence            654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.95  E-value=9.4e-05  Score=45.86  Aligned_cols=57  Identities=16%  Similarity=0.087  Sum_probs=42.8

Q ss_pred             eEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ce-eEEEccccC
Q 033605           51 VVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v-~~~~~d~~~  107 (115)
                      +|||||||||..+.++++ .+.......|+++......+......+. |+ ..+..|+..
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~   87 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA   87 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence            699999999999999995 5666888899999988777776666554 32 334455543

The function of this family is unknown.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=7.2e-05  Score=47.24  Aligned_cols=49  Identities=33%  Similarity=0.444  Sum_probs=39.9

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHH
Q 033605           39 TAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA   87 (115)
Q Consensus        39 ~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a   87 (115)
                      .+++.+. ..++.++||+|+.||.++.-+++.++++|+|+|..-..+..-
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k  118 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK  118 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence            3344444 457889999999999999999999999999999998776543

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.77  E-value=0.00024  Score=44.42  Aligned_cols=58  Identities=24%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      ++.++.|+||--|++..++.+. ....+++.|+++.-+..|.+++...+.  +++...+|.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg   76 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG   76 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC
Confidence            4456999999999999999964 467999999999999999999998887  788888886

>PRK00536 speE spermidine synthase; Provisional

Probab=97.77  E-value=0.0001  Score=47.54  Aligned_cols=46  Identities=13%  Similarity=-0.138  Sum_probs=41.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      .++++||=+|.|.|....++++++. +|+.+||++++++.+++.+..
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~  116 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPH  116 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHH
Confidence            4778999999999999999999865 999999999999999995443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.74  E-value=9.8e-05  Score=47.98  Aligned_cols=54  Identities=24%  Similarity=0.312  Sum_probs=43.8

Q ss_pred             eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++|+.||.|.++..+.+.+...+.++|+++.+++..+.+....     ++++|+.++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~   55 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-----LIEGDITKID   55 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCc
Confidence            68999999999988888777767899999999999999987532     4556665554

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.74  E-value=0.00028  Score=40.89  Aligned_cols=60  Identities=35%  Similarity=0.611  Sum_probs=42.0

Q ss_pred             EEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCc-eeEEEccccC--CcccC
Q 033605           52 VADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN--LEWRG  112 (115)
Q Consensus        52 vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-v~~~~~d~~~--~~~~~  112 (115)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++......... +.+..+|...  +++.+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED  116 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC
Confidence            999999999977 3333322  38999999999999866555431112 6788888765  66654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=97.73  E-value=6.4e-05  Score=41.79  Aligned_cols=51  Identities=22%  Similarity=0.269  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHH
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL   84 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~   84 (115)
                      +.-++......+...+....+|+|||+|.+.--+.+.+. +-.|+|.-..-+
T Consensus        43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~Rk~   93 (112)
T PF07757_consen   43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRRKS   93 (112)
T ss_pred             HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccccccc
Confidence            344444444443444567899999999999888887765 678999766443

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.73  E-value=0.0014  Score=41.75  Aligned_cols=93  Identities=24%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             CCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC
Q 033605           18 NPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL   96 (115)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   96 (115)
                      .+...+.+......-+-+.+.++.++ ....+++||=+|=.-- .++.++ ....++|+.+|+++..++..++.+.+.+.
T Consensus        15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl   92 (243)
T PF01861_consen   15 EPDVELDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL   92 (243)
T ss_dssp             ---GGGT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred             CCccccccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence            34455555444444444455555555 3347889998874333 334444 34467999999999999999999999999


Q ss_pred             ceeEEEccccCCcccCC
Q 033605           97 DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        97 ~v~~~~~d~~~~~~~~~  113 (115)
                      +++.+..|+.+ |+|+.
T Consensus        93 ~i~~~~~DlR~-~LP~~  108 (243)
T PF01861_consen   93 PIEAVHYDLRD-PLPEE  108 (243)
T ss_dssp             -EEEE---TTS----TT
T ss_pred             ceEEEEecccc-cCCHH
Confidence            99999999876 55543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.57  E-value=0.00057  Score=42.52  Aligned_cols=62  Identities=24%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHh----c-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATL----L-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~----~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +|+.|+|+|.-.|..+..+|.    . +..+|+|+|++....+...........++++++||..+..
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~   98 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPE   98 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTH
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHH
Confidence            889999999999998887763    2 4579999999655443322222111127999999986543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.55  E-value=0.00039  Score=43.07  Aligned_cols=43  Identities=26%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCCCh--HHHHHH--h--c---C-CCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCGCGT--LGAAAT--L--L---G-ADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~--~~~~~~--~--~---~-~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++-+|+..||++|.  +++.+.  +  .   + ..+|+|+|+|+.+++.|++
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            356799999999998  344333  3  1   1 2499999999999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.53  E-value=0.00014  Score=43.51  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             EEEeCChhHHHHHHHHhhccC----CceeEEEccccCCcccCC
Q 033605           75 IAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        75 ~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~  113 (115)
                      +|+|+|++|++.|+++.....    .+++++++|++++|+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~   43 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDC   43 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCC
Confidence            489999999999987765322    279999999999998763

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.49  E-value=0.00046  Score=45.47  Aligned_cols=53  Identities=26%  Similarity=0.367  Sum_probs=44.5

Q ss_pred             eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++|+.||.|.++.-+.+.+..-+.++|+++.+.+..+.|..      ....+|+.++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~   54 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEID   54 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCH
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccc
Confidence            799999999999999988877788999999999999999885      56677776654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.47  E-value=4.8e-05  Score=49.56  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCChHHHH-HHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      .+..|+|+.+|.|++++. +...+++.|+++|.+|..++..+.++..++.  ...++.+|-.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R  255 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR  255 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc
Confidence            457899999999999994 4477889999999999999999999887764  4444445543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=97.41  E-value=0.0011  Score=42.49  Aligned_cols=46  Identities=17%  Similarity=0.184  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc---------CCCeEEEEeCChhHHHHHHHHhhc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      .+-+|+|+|+|+|.+...+++.         ...+++-+|+||.+.+.-++++..
T Consensus        18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            3579999999999998887742         124899999999999888888776

; PDB: 4F3N_A 1ZKD_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.37  E-value=0.00076  Score=43.72  Aligned_cols=43  Identities=23%  Similarity=0.073  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      .+.+||=.|||.|+++.+++..+. .+.|.|.|--|+-..+-.+
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiL   98 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFIL   98 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHH
Confidence            457899999999999999998877 9999999999986665543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.31  E-value=3.3e-05  Score=47.97  Aligned_cols=42  Identities=14%  Similarity=0.202  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .+.++||+|+|.|..+..++.. ..+|++.|+|..|.++.++.
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence            4679999999999999999865 34899999999999988764

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0025  Score=39.64  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      ...+..++.+||=||..+|....+++.. +...++|+|.|+.+....-..+.... |+-.+.+|+.
T Consensus        70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA~  134 (231)
T COG1889          70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDAR  134 (231)
T ss_pred             ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-CceeeecccC
Confidence            3446778999999999999999999974 44689999999998766666555443 6666666664

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.29  E-value=0.00093  Score=46.87  Aligned_cols=83  Identities=13%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----C-CCeEEEEeCChhHHHHHHHHhhccCCc
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELD   97 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~   97 (115)
                      ..++.+|.++..-+++.+..    .+..+|.|..||+|.+.....++    . ...++|.|+++.....|+.+..-.+++
T Consensus       165 ~GEfyTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~  240 (489)
T COG0286         165 AGEFYTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE  240 (489)
T ss_pred             CCccCChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            35688888887777776543    24459999999999987766642    1 257999999999999999998877763


Q ss_pred             --eeEEEccccCCc
Q 033605           98 --IDFVQCDIRNLE  109 (115)
Q Consensus        98 --v~~~~~d~~~~~  109 (115)
                        +....+|...-|
T Consensus       241 ~~~~i~~~dtl~~~  254 (489)
T COG0286         241 GDANIRHGDTLSNP  254 (489)
T ss_pred             ccccccccccccCC
Confidence              566666654444

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.29  E-value=0.0039  Score=39.30  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=44.1

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ..+..++.+||-||..+|....+++.. + ...|+++|.|+......-..+.... |+-.+-.|+..
T Consensus        68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr~  133 (229)
T PF01269_consen   68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDARH  133 (229)
T ss_dssp             --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TTS
T ss_pred             ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCCC
Confidence            345667889999999999999999963 3 4699999999977655554444333 67777777753

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.26  E-value=0.0003  Score=46.84  Aligned_cols=84  Identities=23%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHH-------HHHHHhhccCC---c
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE-------LASENAADLEL---D   97 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~~---~   97 (115)
                      .+-.....+.-.+.+.....+++.|.|...|||.+....+.+|+ .|+|.||+-.++.       ..+.|+..++.   -
T Consensus       188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f  266 (421)
T KOG2671|consen  188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF  266 (421)
T ss_pred             CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence            33344444544455555567899999999999999999999866 9999999988876       34556666664   4


Q ss_pred             eeEEEccccCCcccC
Q 033605           98 IDFVQCDIRNLEWRG  112 (115)
Q Consensus        98 v~~~~~d~~~~~~~~  112 (115)
                      +.++.+|..+-++..
T Consensus       267 ldvl~~D~sn~~~rs  281 (421)
T KOG2671|consen  267 LDVLTADFSNPPLRS  281 (421)
T ss_pred             hheeeecccCcchhh
Confidence            778888887766543

>PRK10458 DNA cytosine methylase; Provisional

Probab=97.25  E-value=0.0029  Score=44.18  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..+++|+.||.|.+..-+-..+..-|.++|+++.+.+.-+.|....+ +...+.+|+.++.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~  147 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDIT  147 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCc
Confidence            45899999999999998877776677889999999999888863211 2334445555543

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.24  E-value=0.0024  Score=41.28  Aligned_cols=73  Identities=23%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             HHHHHHHHhcCCCCC-CeEEEEcCCCCh--HHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           35 RMLYTAENSFGDVSN-KVVADFGCGCGT--LGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~-~~vLDlG~G~G~--~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ..+...+..+-...+ .-+||||||.-.  .+=++++  .+.++|+-+|.+|..+..++..+..... ...++++|+.+
T Consensus        54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD  132 (267)
T ss_dssp             HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred             HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence            334444444333224 369999999443  4555654  4678999999999999999998876653 48999999865

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0039  Score=39.22  Aligned_cols=62  Identities=13%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++.+||++|-|.|.....+.+.+..+-+-+|..|..++..+...-...-||.++.+-.++.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv  161 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV  161 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence            58899999999999999988877776788899999999999988766555888888866543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.18  E-value=0.0026  Score=41.27  Aligned_cols=42  Identities=24%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCCCh--HHHHHH--hcC------CCeEEEEeCChhHHHHHHH
Q 033605           48 SNKVVADFGCGCGT--LGAAAT--LLG------ADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        48 ~~~~vLDlG~G~G~--~~~~~~--~~~------~~~v~~vD~s~~~~~~a~~   89 (115)
                      .+-+|+..||++|-  +++.++  +..      ..+|+|+|+|..+++.|+.
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            46799999999998  444433  322      3589999999999999876

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.14  E-value=0.0017  Score=43.89  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhh--cc------CCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA--DL------ELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~--~~------~~~v~~~~~d~~~  107 (115)
                      .-.+||-+|.|.|....++.+++ ..+++-+|++|.|++.++++..  ..      +.+++++..|+-+
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~  357 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ  357 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH
Confidence            34589999999999999999987 5799999999999999984322  11      1168888887644

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=97.14  E-value=0.00032  Score=47.83  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      ++..|-|+.||.|-+.+.++..+ +.|++-|.++++++..+.++..+.+   +++++..|+.+
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             CcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            67899999999999999999876 5999999999999999999987765   58888888743

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.06  E-value=0.0035  Score=40.82  Aligned_cols=62  Identities=29%  Similarity=0.355  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCCCCh-HHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhh-ccC--CceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGT-LGAAATL-LG-ADQVIAIDIDSDSLELASENAA-DLE--LDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~-~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~-~~~--~~v~~~~~d~~~~~  109 (115)
                      .+.+|+=||||.=- .++.+++ ++ ...|+++|+++.+++.+++... ..+  .++.|+++|..+.+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~  187 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT  187 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence            45699999999544 5555664 33 4589999999999999998877 233  37999999987654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.04  E-value=0.00075  Score=45.57  Aligned_cols=68  Identities=21%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  114 (115)
                      .++..++|+|||.|....+++.+..+.++|++.++..+..+........+  +..++.+|+.+-|+++..
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~  178 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNT  178 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccc
Confidence            45568999999999999999988778999999999999888776665554  455577888888888743

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0066  Score=42.27  Aligned_cols=63  Identities=19%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      -++|-+|||...++..+...+...|+.+|+|+-.++..............++..|+..+.|++
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed  112 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED  112 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence            489999999999999998888789999999999999888877533336888889998888876

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.04  E-value=0.0015  Score=40.18  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=28.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDID   80 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s   80 (115)
                      .++.+|||+||..|.++....+.  +...|.|+|+.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            46789999999999999888753  45689999964

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.03  E-value=0.0011  Score=43.96  Aligned_cols=53  Identities=21%  Similarity=0.206  Sum_probs=41.3

Q ss_pred             EEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           52 VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        52 vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      |+|+.||.|.++.-+.+.+..-+.++|+++.+++..+.|...     .+.++|+.++.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~   53 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKIS   53 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhh
Confidence            689999999999988877765667899999999999988753     33445655543

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.01  E-value=0.0026  Score=39.73  Aligned_cols=49  Identities=31%  Similarity=0.537  Sum_probs=25.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      +...|.|+|||.+.++..+.+  .-+|...|+...              +-.+..+|+.++|+++
T Consensus        72 ~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vPL~~  120 (219)
T PF05148_consen   72 KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVPLED  120 (219)
T ss_dssp             TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S--T
T ss_pred             CCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCcCCC
Confidence            456899999999999966531  226888887663              1135567777777765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=96.94  E-value=0.0016  Score=42.22  Aligned_cols=52  Identities=27%  Similarity=0.354  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhc---CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHH
Q 033605           33 ASRMLYTAENSF---GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL   84 (115)
Q Consensus        33 ~~~~~~~~~~~~---~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~   84 (115)
                      +...+..+.+.+   -...+++|||+|||.|.-.+.....+...+...|++.+.+
T Consensus        98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen   98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            445555555332   2347899999999999999988877667899999998877

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.94  E-value=0.0016  Score=45.34  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=19.3

Q ss_pred             CeEEEEcCCCChHHHHHHhcCC
Q 033605           50 KVVADFGCGCGTLGAAATLLGA   71 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~   71 (115)
                      .++||+|||+|.++..|...+.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V  140 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV  140 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc
Confidence            5799999999999999987744

; GO: 0008168 methyltransferase activity

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.87  E-value=0.0052  Score=42.13  Aligned_cols=64  Identities=14%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ..++.+|||.++..|.-+.++|.  .+...|++.|.+...+...+.++...|. +..+...|..++|
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~  305 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP  305 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence            45788999999999998888884  3456899999999999999999999998 7777788887654

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.87  E-value=0.0023  Score=43.22  Aligned_cols=70  Identities=13%  Similarity=0.058  Sum_probs=58.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f  114 (115)
                      ...++.+|+|..|-.|.-+.+++.  .+..++.|.|.+..+.+..++.....++ .++.+.+|+...+.+++|
T Consensus       210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~  282 (413)
T KOG2360|consen  210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKF  282 (413)
T ss_pred             CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccc
Confidence            455778999999999999999885  3456999999999999999999998888 788889999886555444

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=96.86  E-value=0.0082  Score=40.81  Aligned_cols=41  Identities=29%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      -+.|+|+|.|.|.++..++-...-.|.+||-|......|+.
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            35899999999999999984334499999999766655544

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.85  E-value=0.013  Score=38.37  Aligned_cols=58  Identities=26%  Similarity=0.327  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      .+....+.. ....++.|||.-+|+|..+....+.+. .++|+|+++..++.+.++....
T Consensus       210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence            344444443 334788999999999999998877755 8999999999999999988754

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.83  E-value=0.01  Score=40.11  Aligned_cols=57  Identities=26%  Similarity=0.260  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccc
Q 033605           49 NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDI  105 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~  105 (115)
                      +.+|+|.-+|+|.-++..+. .+..+++.-|+||.+.+.+++|+..+ +.+...++.|+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA  111 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDA  111 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchH
Confidence            78999999999999999885 44448999999999999999999988 33666666655

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.79  E-value=0.0044  Score=40.04  Aligned_cols=48  Identities=29%  Similarity=0.547  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .....|.|+|||-+.++.   .... .|+..|+.+.              +-.++.+|+.++|+++
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a~--------------~~~V~~cDm~~vPl~d  226 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SERH-KVHSFDLVAV--------------NERVIACDMRNVPLED  226 (325)
T ss_pred             cCceEEEecccchhhhhh---cccc-ceeeeeeecC--------------CCceeeccccCCcCcc
Confidence            355689999999998876   2222 6777776542              2345566666666654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.78  E-value=0.0039  Score=40.88  Aligned_cols=43  Identities=30%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCCCh--HHHHHH--hc-C----CCeEEEEeCChhHHHHHHHH
Q 033605           48 SNKVVADFGCGCGT--LGAAAT--LL-G----ADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        48 ~~~~vLDlG~G~G~--~~~~~~--~~-~----~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .+-+|+..||++|.  +++.+.  +. +    ..+|+|+|+|+.+++.|++-
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            34799999999998  444433  32 1    24799999999999999874

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.73  E-value=0.0056  Score=40.70  Aligned_cols=45  Identities=31%  Similarity=0.462  Sum_probs=39.2

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....+.+||=+|+| .|..+...++ .++++|+.+|+++.+++.|++
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            44578899999999 6777777776 688999999999999999998

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.72  E-value=0.0009  Score=37.08  Aligned_cols=54  Identities=17%  Similarity=0.117  Sum_probs=14.5

Q ss_pred             EEEcCCCChHHHHHHhc---CC-CeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC
Q 033605           53 ADFGCGCGTLGAAATLL---GA-DQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN  107 (115)
Q Consensus        53 LDlG~G~G~~~~~~~~~---~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~  107 (115)
                      ||+|+..|..+..+++.   .. .+++++|..+. .+..++.....+  .++++++++..+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~   60 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD   60 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH
Confidence            68999999998888742   12 37999999995 222222222222  279999988753

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=96.59  E-value=0.023  Score=36.80  Aligned_cols=49  Identities=18%  Similarity=0.208  Sum_probs=34.8

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc------CCCeEEEEeCChhHH
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDSDSL   84 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~------~~~~v~~vD~s~~~~   84 (115)
                      ++..+.+.--..++..++|+|||.|.++.++++.      +...++.||-.....
T Consensus         6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~   60 (259)
T PF05206_consen    6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH   60 (259)
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence            4444444433346678999999999999998852      345889999766554

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.46  E-value=0.0036  Score=40.37  Aligned_cols=48  Identities=13%  Similarity=0.091  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      .++.++||+|||+-.+....+.....+|+..|+++...+..++.+...
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~  102 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE  102 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC
Confidence            467799999999966654444444669999999999999888877654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.46  E-value=0.012  Score=39.37  Aligned_cols=45  Identities=24%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      ..+++|+.||.|.+..-+...+..-+.++|+++.+++.-+.+...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~   47 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH   47 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence            468999999999999888877776788899999999999998873

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.45  E-value=0.014  Score=39.88  Aligned_cols=60  Identities=28%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-c--eeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--v~~~~~d~~~  107 (115)
                      .+.++||.-+|+|.-++..+..  +..+|++-|+|+.+++..+.|+..++. .  +++.+.|+..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~  113 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV  113 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH
Confidence            4568999999999999888853  457999999999999999999988877 2  6777777643

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.43  E-value=0.0031  Score=41.01  Aligned_cols=70  Identities=21%  Similarity=0.241  Sum_probs=49.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCCC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI  115 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f~  115 (115)
                      .+..++...+  .+..++|+|||.|..+.   ..+...++|.|++...+.-++..-.     ......|+.++|+++..|
T Consensus        35 ~v~qfl~~~~--~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~-----~~~~~ad~l~~p~~~~s~  104 (293)
T KOG1331|consen   35 MVRQFLDSQP--TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGG-----DNVCRADALKLPFREESF  104 (293)
T ss_pred             HHHHHHhccC--CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCC-----ceeehhhhhcCCCCCCcc
Confidence            3444444433  57799999999998654   2355689999999988877765432     146778999999887654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.037  Score=37.41  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=38.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc---------CCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ..+.+-.++|+|+|.|.+...+++.         ...++.-||+|++....=++.....
T Consensus        74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            4445678999999999998777632         2569999999999887766666544

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=96.41  E-value=0.0089  Score=38.28  Aligned_cols=56  Identities=14%  Similarity=0.051  Sum_probs=37.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ++..+.+.++..+..+++|+.||+|..+..+... ...++.-|+++..+...+..+.
T Consensus         8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen    8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHh
Confidence            4455555555436789999999999999988663 5599999999998877774443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.20  E-value=0.029  Score=37.98  Aligned_cols=65  Identities=18%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc-CC----CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL-GA----DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~-~~----~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ...++.+|||+++..|.-+..+.+. ..    ..|++-|+++.++....+.....+. ++.+...|+..+|
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p  222 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP  222 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecc
Confidence            4568899999999999999888753 22    2899999999999999988866655 6666666665544

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.10  E-value=0.014  Score=39.02  Aligned_cols=55  Identities=20%  Similarity=0.170  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ...+|+|.|.|+.+..+... ..+|-++++....+..++.... -  .|+.+-+|...-
T Consensus       179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~--gV~~v~gdmfq~  233 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P--GVEHVAGDMFQD  233 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C--Ccceeccccccc
Confidence            68999999999999998874 4479999999999888887774 3  377777876443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.93  E-value=0.035  Score=37.47  Aligned_cols=46  Identities=37%  Similarity=0.482  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605           47 VSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .++.+|+=+||| .|.++..+++ .+...|+++|.++..++.|++...
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g  214 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG  214 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC
Confidence            344589999999 6778777775 577899999999999999998543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=95.68  E-value=0.057  Score=31.88  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             EEcCCCC--hHHHHHH--h-cCCCeEEEEeCChhHHHHHHHH
Q 033605           54 DFGCGCG--TLGAAAT--L-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        54 DlG~G~G--~~~~~~~--~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      |+|++.|  .....+.  . ....+|+++|++|..++..+.+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  6655553  2 2356899999999999998888

; PDB: 2PY6_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=95.58  E-value=0.073  Score=36.45  Aligned_cols=47  Identities=13%  Similarity=0.047  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ...++++||-|.+|-.+..-.++. ++++|++||+||......+-+..
T Consensus        32 ~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence            445888999998776666555545 46699999999998876665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.56  E-value=0.028  Score=36.86  Aligned_cols=66  Identities=23%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ....++.|+=+| -.-..++.++- ..+.+|..+||++..++..++.+.+.+. |++.+..|+.+ |+|+
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe  216 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPE  216 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChH
Confidence            345778899888 44455666553 3367999999999999999999999998 69999999876 5554

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.48  E-value=0.048  Score=34.82  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH---Hhhcc-CC------ceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE---NAADL-EL------DIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~---~~~~~-~~------~v~~~~~d~~~~  108 (115)
                      .+|||.-+|-|.=++.++..++ +|+++|-||-+....+.   +.... ..      +++++++|..++
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~  144 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY  144 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence            4899999999999999887765 89999999988655443   22211 11      789999997653

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.011  Score=35.72  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=39.4

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ....+.+|||+|.| +|..++.+|. .+...|...|-+++.+...++....+
T Consensus        26 n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n   77 (201)
T KOG3201|consen   26 NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN   77 (201)
T ss_pred             hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence            33467899999999 6777788874 56779999999999998887765443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.38  E-value=0.035  Score=37.89  Aligned_cols=78  Identities=15%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc-------cCC---ce
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-------LEL---DI   98 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~---~v   98 (115)
                      ++.....+..+++.....+.+...|+|+|.|.....++.. +.+.-+|+++.+...+.+..+...       .|.   .+
T Consensus       174 GE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~  253 (419)
T KOG3924|consen  174 GETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI  253 (419)
T ss_pred             hhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence            4445555666667778889999999999999988877754 456889999877665544443322       122   46


Q ss_pred             eEEEccccC
Q 033605           99 DFVQCDIRN  107 (115)
Q Consensus        99 ~~~~~d~~~  107 (115)
                      ..+++++.+
T Consensus       254 ~~i~gsf~~  262 (419)
T KOG3924|consen  254 ETIHGSFLD  262 (419)
T ss_pred             eecccccCC
Confidence            666666544

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.20  E-value=0.087  Score=35.24  Aligned_cols=52  Identities=35%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .+.....++.++.-+|+|. |.....-++ .++++++|+|++++-.+.|++.-.
T Consensus       185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa  238 (375)
T KOG0022|consen  185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA  238 (375)
T ss_pred             hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence            3444556778888888874 444444444 578899999999999999887543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.13  E-value=0.051  Score=34.98  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHH
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL   84 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~   84 (115)
                      +...|||+|+|+|-.++.++.....+|+..|+.....
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~  122 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE  122 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence            3567999999999888888875566888888766443

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.11  E-value=0.25  Score=31.78  Aligned_cols=48  Identities=21%  Similarity=0.181  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      +..++||+|.|.-.+--.+.. .-.-..+|.|+++.++..|+.++..++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~  126 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP  126 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc
Confidence            345789998876655444432 224489999999999999999988873

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.27  Score=31.97  Aligned_cols=60  Identities=13%  Similarity=0.170  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh----cC-CCeEEEEeCChhHHHHHHHH-hhccCC-ceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASEN-AADLEL-DIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~----~~-~~~v~~vD~s~~~~~~a~~~-~~~~~~-~v~~~~~d~~  106 (115)
                      -.+..++|+|+|+..-+..+..    .+ ...++.+|+|...+....+. ...+.- .+.-+++|.+
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~  143 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYE  143 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHH
Confidence            3578999999999997777663    12 35899999999988654444 334432 6666677654

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.82  E-value=0.087  Score=33.23  Aligned_cols=66  Identities=12%  Similarity=0.034  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHHHhcCCCC----CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           30 PHIASRMLYTAENSFGDVS----NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~----~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      ...+..+++++.+.....+    ..++|||||=+........  +.-.|+.||+++.              .-.+.++|+
T Consensus        29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~--~~fdvt~IDLns~--------------~~~I~qqDF   92 (219)
T PF11968_consen   29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS--GWFDVTRIDLNSQ--------------HPGILQQDF   92 (219)
T ss_pred             CchhHHHHHHhhhhccccccccccceEEeecccCCCCccccc--CceeeEEeecCCC--------------CCCceeecc
Confidence            3445566666665543322    3599999998776555432  2236999999983              224667777


Q ss_pred             cCCccc
Q 033605          106 RNLEWR  111 (115)
Q Consensus       106 ~~~~~~  111 (115)
                      .+.|+|
T Consensus        93 m~rplp   98 (219)
T PF11968_consen   93 MERPLP   98 (219)
T ss_pred             ccCCCC
Confidence            777665

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.80  E-value=0.15  Score=34.39  Aligned_cols=53  Identities=32%  Similarity=0.443  Sum_probs=41.8

Q ss_pred             HHHHhcCCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           39 TAENSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      ...+.....++.+|.=+||| .|...+.-+. .++..++++|+++..++.|++.-
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG  230 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG  230 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC
Confidence            34555566788899999998 6777776664 67789999999999999998753

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.80  E-value=0.29  Score=32.42  Aligned_cols=60  Identities=23%  Similarity=0.354  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ..+..||--|.|.|.   ++.++++.+. +++..|++.+....-.+.....| ++....+|+.+.
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~   98 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDR   98 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCH
Confidence            357899999999886   5666777755 89999999998877777666555 677777777553

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.72  E-value=0.11  Score=36.96  Aligned_cols=44  Identities=23%  Similarity=0.149  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .++.+|+=+||| .|..++..++...+.|+++|.+++.++.+++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl  207 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM  207 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            468899999999 56677777754334899999999999988873

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.61  E-value=0.35  Score=34.66  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCCCC---CCeEEEEcCCCChHHHHHH---h--cCCCeEEEEeCChhHHHHHHHHhh-ccCCceeEEEc
Q 033605           33 ASRMLYTAENSFGDVS---NKVVADFGCGCGTLGAAAT---L--LGADQVIAIDIDSDSLELASENAA-DLELDIDFVQC  103 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~---~~~vLDlG~G~G~~~~~~~---~--~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~v~~~~~  103 (115)
                      ...+...+++..+..+   ..+|+=+|+|.|-+.....   .  ....+++++|-+|.++-..+.+.. ..+.+|+++.+
T Consensus       349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~  428 (649)
T KOG0822|consen  349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS  428 (649)
T ss_pred             HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence            4455555555543322   4568889999998764443   2  123589999999999987776332 23448999999


Q ss_pred             cccCCccc
Q 033605          104 DIRNLEWR  111 (115)
Q Consensus       104 d~~~~~~~  111 (115)
                      |+.+++.|
T Consensus       429 DMR~w~ap  436 (649)
T KOG0822|consen  429 DMRKWNAP  436 (649)
T ss_pred             cccccCCc
Confidence            99999865

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.45  E-value=0.45  Score=30.46  Aligned_cols=60  Identities=12%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhH-HHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-LELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~-~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      .+.++|-.|++ |.++..++    +.+..+|+.++-++.. ++.+.+.....+. +++++++|+.+.
T Consensus         7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~   72 (253)
T PRK07904          7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT   72 (253)
T ss_pred             CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence            56688888875 44444444    3444589999887764 5544444444333 788899988654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.40  E-value=0.23  Score=27.68  Aligned_cols=46  Identities=24%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             CCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           57 CGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        57 ~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ||.|.++..+++   ....+|+.+|.+++.++.++...      +.++.+|..+.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~   52 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------VEVIYGDATDP   52 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------SEEEES-TTSH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------cccccccchhh
Confidence            677788877773   23448999999999988877543      56888887654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.38  E-value=0.089  Score=35.77  Aligned_cols=57  Identities=16%  Similarity=0.121  Sum_probs=39.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhh
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .+..+....+...+.++||+|.|.|.-...+.. .+ ...++.++.|+..-+.......
T Consensus       101 sL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~  159 (484)
T COG5459         101 SLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAE  159 (484)
T ss_pred             HHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHh
Confidence            344444444566788999999999988777664 33 3578889999976655554433

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.61  Score=29.63  Aligned_cols=60  Identities=23%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.........+.++.++.+|+.+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   70 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQH   70 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence            56788888875543   2233334444 899999888777666555544444677777877653

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.11  E-value=0.27  Score=30.69  Aligned_cols=57  Identities=25%  Similarity=0.406  Sum_probs=41.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh----cC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~----~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++..|+|+|.-.|..++.+|.    .+ ..+|+++|++=..++.+.....    .+.|++++-.+
T Consensus        68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p----~i~f~egss~d  129 (237)
T COG3510          68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP----DILFIEGSSTD  129 (237)
T ss_pred             cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC----CeEEEeCCCCC
Confidence            3888999999999998888774    23 2599999998766655443322    67888877654

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.91  E-value=0.22  Score=33.89  Aligned_cols=46  Identities=39%  Similarity=0.584  Sum_probs=36.1

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++.+||..|||. |..+..+++. +...+++++.++++.+.+++.
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            445678999999986 7788888864 444699999999998888765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.81  E-value=0.2  Score=36.49  Aligned_cols=41  Identities=15%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             HhcCCC-CCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChh
Q 033605           42 NSFGDV-SNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSD   82 (115)
Q Consensus        42 ~~~~~~-~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~   82 (115)
                      ..+... +...||||||.+|.+....++. + ..-|+|+|+-|-
T Consensus        37 ~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi   80 (780)
T KOG1098|consen   37 KKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI   80 (780)
T ss_pred             HHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence            333433 5668999999999999888864 3 358899998763

>PRK07677 short chain dehydrogenase; Provisional

Probab=93.75  E-value=0.84  Score=28.97  Aligned_cols=56  Identities=32%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             CeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           50 KVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++|-.|++.| ++..    +++.+. +|++++-++...+.+.+.....+.++.++.+|+.+
T Consensus         2 k~~lItG~s~g-iG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~   61 (252)
T PRK07677          2 KVVIITGGSSG-MGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN   61 (252)
T ss_pred             CEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence            46776776544 3333    334444 89999888777666655544333367777777754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.75  E-value=0.21  Score=29.43  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=28.0

Q ss_pred             eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        73 ~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      +|+|.||.+++++..+++....+.  ++++++..=+++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l   38 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL   38 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH
Confidence            589999999999999999998876  688888654443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK06172 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.91  Score=28.77  Aligned_cols=58  Identities=26%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|++ |.++..++    +.+ .+|+.++-++.............+.++.++.+|+.+
T Consensus         6 ~~k~ilItGas-~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~   67 (253)
T PRK06172          6 SGKVALVTGGA-AGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGGEALFVACDVTR   67 (253)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence            46688888864 44444333    444 489999988877666555554444467788888765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.69  E-value=0.31  Score=32.92  Aligned_cols=49  Identities=31%  Similarity=0.295  Sum_probs=37.7

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ....++++|+=.|+| .|.++..+++.-.++|+++|.+++-.+.|++.-.
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA  211 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA  211 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC
Confidence            355678999999998 3446677776333799999999999999888644

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.62  E-value=0.98  Score=28.68  Aligned_cols=58  Identities=19%  Similarity=0.177  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|+.++-+++.++.........+.++.++.+|+.+
T Consensus        10 ~~k~ilItGa-s~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   71 (256)
T PRK06124         10 AGQVALVTGS-ARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD   71 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC
Confidence            6778887885 444444444    344 499999998877666555554444467788888765

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=93.61  E-value=0.33  Score=32.37  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ..+.+|+-+|+|--+...++++.+. +|.+||+++..+..-+-++.
T Consensus        62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkla  106 (414)
T COG5379          62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLA  106 (414)
T ss_pred             CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHH
Confidence            3677999999998888888877755 99999999998866555444

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=93.54  E-value=0.66  Score=27.69  Aligned_cols=46  Identities=15%  Similarity=0.105  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDID   80 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s   80 (115)
                      ...++++...... -+.-|||+|-|+|+.--++-+ .+...|+++|-.
T Consensus        15 R~~L~~a~~~v~~-~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   15 RDCLNWAAAQVAG-LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             HHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             HHHHHHHHHHhcC-CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            4456666666444 346899999999999988885 566799999943

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.99  Score=29.02  Aligned_cols=60  Identities=20%  Similarity=0.326  Sum_probs=39.1

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++.|.   ++..+++.+. +|+.++.++..++...+..... +.++.++.+|+.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR   70 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence            56688888876544   2333445554 8999999887776665554332 33678888888764

>PRK07063 short chain dehydrogenase; Provisional

Probab=93.52  E-value=1  Score=28.70  Aligned_cols=59  Identities=25%  Similarity=0.236  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhc--cCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++. .++..    +++.+ .+|+.++-+++..+...+....  .+.++.++.+|+.+.
T Consensus         6 ~~k~vlVtGas~-gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   70 (260)
T PRK07063          6 AGKVALVTGAAQ-GIGAAIARAFAREG-AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA   70 (260)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence            567888888654 33333    33444 4899999988877666655543  233677888887653

>PRK07035 short chain dehydrogenase; Provisional

Probab=93.49  E-value=0.99  Score=28.59  Aligned_cols=60  Identities=17%  Similarity=0.247  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.++...+...+.....+.++.++..|+.+.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   69 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEM   69 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence            45678878766554   2233334444 999999888776665555544444566777777543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=93.48  E-value=1  Score=28.89  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++.|.   ++..++..+. +|+.++-++..++.........+.++.++.+|+.+.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   71 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDE   71 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            56678888876544   2333444544 888899888777666666555444677888887643

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.46  E-value=1.1  Score=28.42  Aligned_cols=58  Identities=28%  Similarity=0.311  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++ |.++..+    ++.+. +|++++.++...+.........+.++.++..|+.+
T Consensus         4 ~~k~vlItGa~-~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~   65 (258)
T PRK07890          4 KGKVVVVSGVG-PGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD   65 (258)
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC
Confidence            45678877754 4444433    34444 89999988876665555544334467777877754

>PRK05876 short chain dehydrogenase; Provisional

Probab=93.34  E-value=1.1  Score=29.14  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..++    +.+ .+|+.++.++..++...+.....+.++.++..|+.+.
T Consensus         5 ~~k~vlVTGas~-gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~   67 (275)
T PRK05876          5 PGRGAVITGGAS-GIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHR   67 (275)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            566788777654 4444443    444 4899999888776655554444444677788887653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.22  E-value=0.65  Score=32.32  Aligned_cols=53  Identities=19%  Similarity=0.134  Sum_probs=36.8

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           37 LYTAENSFGD-VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        37 ~~~~~~~~~~-~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ++.+.+..+. ..+++|+=+|+| .|......++...++|+++|.++.....|+.
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM  243 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence            3444444332 478899999999 5666665665334489999999988877765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.19  E-value=0.52  Score=31.53  Aligned_cols=46  Identities=39%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||=.||| .|..+..+++. +..+|+++|.+++.++.+++.
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l  213 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM  213 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence            34467888888876 44455556654 445799999999999888763

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.19  E-value=0.079  Score=36.33  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=16.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH
Q 033605           48 SNKVVADFGCGCGTLGAAAT   67 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~   67 (115)
                      +..+|+|+|||+|.+++.+.
T Consensus        63 ~~~~iaDlGcs~G~ntl~~v   82 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHII   82 (386)
T ss_pred             cceeEEEecCCCCccHHHHH
Confidence            35689999999998876653

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.18  E-value=0.81  Score=26.94  Aligned_cols=57  Identities=23%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             eEEEEcCCCChHHHH----HHhcCCCeEEEEeCC--hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAA----ATLLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|=.|++ |.++..    +++.+...|+.+.-+  .+..+.........+.++.+++.|+.+.
T Consensus         2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~   64 (167)
T PF00106_consen    2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDP   64 (167)
T ss_dssp             EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSH
T ss_pred             EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccc
Confidence            45666665 444444    344556688888888  5555555555555555889999887653

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06194 hypothetical protein; Provisional

Probab=93.08  E-value=1.2  Score=28.88  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.++|=.|+ +|.++..++    +.+ .+|+.+|.++..++.........+.++.++.+|+.+.
T Consensus         5 ~~k~vlVtGa-sggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~   67 (287)
T PRK06194          5 AGKVAVITGA-ASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDA   67 (287)
T ss_pred             CCCEEEEeCC-ccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            4567886664 455554444    344 4899999887766655544443344678888888653

>PTZ00357 methyltransferase; Provisional

Probab=93.07  E-value=0.47  Score=35.38  Aligned_cols=62  Identities=18%  Similarity=0.259  Sum_probs=41.9

Q ss_pred             CeEEEEcCCCChHHHHHHh----cC-CCeEEEEeCChhHHHHHHHHh---hcc-------CCceeEEEccccCCccc
Q 033605           50 KVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASENA---ADL-------ELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~----~~-~~~v~~vD~s~~~~~~a~~~~---~~~-------~~~v~~~~~d~~~~~~~  111 (115)
                      ..|+=+|+|.|-+.....+    .+ ..+|++||-++..+.....+.   ...       +-.|+++..|+..+..+
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~p  778 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATA  778 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccc
Confidence            3689999999997654432    22 248999999977554433332   122       22599999999998654

>KOG2811 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=0.76  Score=31.50  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCChHHHHHHh-cCCCeEEE---EeCChhHHHHHHHHhhc
Q 033605           50 KVVADFGCGCGTLGAAATL-LGADQVIA---IDIDSDSLELASENAAD   93 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~-~~~~~v~~---vD~s~~~~~~a~~~~~~   93 (115)
                      ..++|+|||.|.++.+++. ....+++-   +|-....+..=.+....
T Consensus       184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~  231 (420)
T KOG2811|consen  184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNK  231 (420)
T ss_pred             ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhcc
Confidence            5899999999999999984 33344444   77666666554444333

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=92.97  E-value=0.35  Score=32.58  Aligned_cols=52  Identities=23%  Similarity=0.215  Sum_probs=38.2

Q ss_pred             EEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605           52 VADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (115)
Q Consensus        52 vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~  103 (115)
                      -+|||.|...+-..+. ....-..+++|+.+.....|+.++..++.  .+.+++.
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~  160 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKV  160 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEe
Confidence            4788877666544443 23335889999999999999999998876  5666655

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=92.95  E-value=0.19  Score=33.90  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=17.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHh
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATL   68 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~   68 (115)
                      .....-+|+|+||..|..++.+..
T Consensus        13 ~~~~~~~iaD~GcS~G~Nsl~~~~   36 (334)
T PF03492_consen   13 NNPKPFRIADLGCSSGPNSLLAVS   36 (334)
T ss_dssp             TTTTEEEEEEES--SSHHHHHHHH
T ss_pred             CCCCceEEEecCCCCCccHHHHHH
Confidence            344566899999999999887653

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.93  E-value=1.3  Score=29.07  Aligned_cols=59  Identities=25%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+.++|=.|++ |.++..++    +.+ .+|+.++-+++.++...+.....+.++.++.+|+.+.
T Consensus        39 ~~k~vlItGas-ggIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~  101 (293)
T PRK05866         39 TGKRILLTGAS-SGIGEAAAEQFARRG-ATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDL  101 (293)
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            45678877764 44444443    343 4999999988777666555444344677788887653

>PRK08862 short chain dehydrogenase; Provisional

Probab=92.86  E-value=1.3  Score=27.95  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++-++..++...+.....+.++..+..|+.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~   65 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS   65 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC
Confidence            45688888887765   3344445544 88888888887766655554444455566666654

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.79  E-value=1.6  Score=27.69  Aligned_cols=59  Identities=20%  Similarity=0.165  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..+    ++.+. +|+.++-++...+.........+.++.++.+|+.+.
T Consensus         5 ~~k~~lItGas~-giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   67 (254)
T PRK07478          5 NGKVAIITGASS-GIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDE   67 (254)
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            456777676654 333333    34444 899999888777666555554444677777887653

>PRK07109 short chain dehydrogenase; Provisional

Probab=92.72  E-value=1.7  Score=29.23  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.++|=.|++ |.++..+    ++.+ .+|+.++-+++.++...+.....+.++.++.+|+.+.
T Consensus         7 ~~k~vlITGas-~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~   69 (334)
T PRK07109          7 GRQVVVITGAS-AGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADA   69 (334)
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCH
Confidence            45677877754 4444433    3444 4899999888877766665555555778888887653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.65  E-value=1.6  Score=27.43  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.++|=.|+ +|.++..++    +.+ .+|+.++.++..+..+.+.....+.++.+++.|+.+
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~   65 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD   65 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence            4668887775 344444433    344 489999988876666555554444467777777654

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.62  E-value=1.5  Score=27.51  Aligned_cols=60  Identities=18%  Similarity=0.168  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.+++|-.|+ +|.++..++    +.+. +|++++-++.............+.++.++.+|+.+.+
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   68 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPE   68 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHH
Confidence            4457787774 555555544    3444 8999998887665554444433346788888887643

>PRK08589 short chain dehydrogenase; Validated

Probab=92.54  E-value=1.6  Score=28.20  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|++++.+ ..+....+.....+.++.++.+|+.+.
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~   66 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDE   66 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCH
Confidence            56678877765443   223333444 489999888 444444343433333677777777543

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.31  E-value=1.7  Score=29.23  Aligned_cols=58  Identities=21%  Similarity=0.321  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++. .++..    +++.+ .+|+.++-+++.++...+.....+.++.++..|+.+
T Consensus         6 ~~k~vlITGAs~-GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d   67 (330)
T PRK06139          6 HGAVVVITGASS-GIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD   67 (330)
T ss_pred             CCCEEEEcCCCC-HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC
Confidence            556788777643 33333    33444 489999998888776666655555567777777764

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.18  E-value=0.49  Score=31.68  Aligned_cols=43  Identities=19%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHh--cCCCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCG-CGTLGAAATL--LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++++||=+||| .|.++..+++  .+..+|+++|.++..++.++.
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~  207 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF  207 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence            467899999976 3444445554  345689999999998888765

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.02  E-value=2.1  Score=27.37  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.++|=.|+ +|.++..++    +.+ .+|++++-+++..+.........+.++.++.+|+.+.
T Consensus         9 ~~~~vlItGa-sggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   71 (263)
T PRK07814          9 DDQVAVVTGA-GRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHP   71 (263)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            5678888885 455555444    344 4999999988776655554443334677777877654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.93  E-value=2.1  Score=27.15  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++..++.........+.++.++.+|+.+.
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~   71 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDH   71 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCH
Confidence            5678888874 555555554    344 4899999888776665555544444577777887653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=91.92  E-value=2.2  Score=27.19  Aligned_cols=59  Identities=24%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.| |+|.++..++    +.+ .+|+.++-++...+.........+.++.++.+|+.+.
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~   73 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAAHLEALGIDALWIAADVADE   73 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence            567888888 4556555555    334 4899999888776666655544444677888887653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=91.85  E-value=2.2  Score=27.12  Aligned_cols=59  Identities=24%  Similarity=0.364  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++.| ++..    +++.+ .+++.++.+..............+.++.++..|+.+.
T Consensus        10 ~~k~vlVtG~s~g-IG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   72 (255)
T PRK06113         10 DGKCAIITGAGAG-IGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE   72 (255)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            4678888886544 3333    33444 4888888877766655544443333567777777653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.77  E-value=2.2  Score=27.04  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+. +|++++-++...+.+.+.....+.++.++.+|+.+.
T Consensus         6 ~~~~vlItGa-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   68 (262)
T PRK13394          6 NGKTAVVTGA-ASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNE   68 (262)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCH
Confidence            4567775554 445544444    3444 899999988777666665554444677788887653

>PRK08643 acetoin reductase; Validated

Probab=91.76  E-value=2.2  Score=27.04  Aligned_cols=57  Identities=21%  Similarity=0.222  Sum_probs=34.2

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++|=.|+. |.++..++    +.+ .+|+.++-++...+.........+.++.++.+|+.+.
T Consensus         3 k~~lItGas-~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   63 (256)
T PRK08643          3 KVALVTGAG-QGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDR   63 (256)
T ss_pred             CEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            456656644 44444443    344 4899998887776665555444334667777777653

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.66  E-value=2.4  Score=27.36  Aligned_cols=60  Identities=18%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++..+...+.....+.++.++.+|+.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   71 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDK   71 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            45677777765433   2222334444 899999887766555554444444677788887653

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.62  E-value=0.96  Score=31.27  Aligned_cols=56  Identities=18%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             CeEEEEcCC-CChHHHH-HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCG-CGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G-~G~~~~~-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+||=|||| .|..... +++.+..+|+..|-+++.++.+......   +++.++.|+.+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~   59 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADV   59 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccCh
Confidence            478889996 4554444 3455557999999999888887766533   678888888765

>PRK09072 short chain dehydrogenase; Provisional

Probab=91.61  E-value=2.4  Score=27.08  Aligned_cols=58  Identities=17%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.++|=.|++. .++..    +++.+ .+|++++.++..+....... ..+.++.++.+|+.+.
T Consensus         4 ~~~~vlItG~s~-~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~   65 (263)
T PRK09072          4 KDKRVLLTGASG-GIGQALAEALAAAG-ARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSE   65 (263)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCH
Confidence            455777777654 44333    33444 48999999887776655444 2233677888887653

>PRK07062 short chain dehydrogenase; Provisional

Probab=91.60  E-value=2.3  Score=27.19  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.+.+.....  +.++.++.+|+.+.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   71 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE   71 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence            56788888865543   2233334444 8999999887776655544332  12567777777653

>PRK07326 short chain dehydrogenase; Provisional

Probab=91.55  E-value=2.2  Score=26.62  Aligned_cols=57  Identities=23%  Similarity=0.212  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+.++|-.| |+|.++..++    +. ..+|++++.++............. .+++++.+|+.+
T Consensus         5 ~~~~ilItG-atg~iG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~   65 (237)
T PRK07326          5 KGKVALITG-GSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRD   65 (237)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHC-CCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCC
Confidence            356788787 4566655554    33 348999998887665554444322 257777777654

>PRK08303 short chain dehydrogenase; Provisional

Probab=91.47  E-value=2.2  Score=28.29  Aligned_cols=60  Identities=18%  Similarity=0.077  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh----------hHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS----------DSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~----------~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++.|.   .+..+++.+ .+|+.++.+.          +.++...+.....+.++.++++|+.+.
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~   79 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVP   79 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            56788888876553   223333444 4888887762          233333333333343566777777653

>PRK09242 tropinone reductase; Provisional

Probab=91.46  E-value=2.4  Score=26.90  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~  107 (115)
                      +++++|-.|++.| ++..    +++.+ .+|+.++-+++..+.........  +.++.++.+|+.+
T Consensus         8 ~~k~~lItGa~~g-IG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~   71 (257)
T PRK09242          8 DGQTALITGASKG-IGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD   71 (257)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence            5668888887543 3333    33444 48999998887766655554433  2367778888765

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.43  E-value=2.5  Score=26.94  Aligned_cols=58  Identities=24%  Similarity=0.322  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++.| ++..    +++.+. +|++++.+++..+......... +.++.++..|+.+
T Consensus         6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~   68 (259)
T PRK06125          6 AGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS   68 (259)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence            4568888886443 4433    334444 9999999887776655544432 3367777787754

>PLN02740 Alcohol dehydrogenase-like

Probab=91.39  E-value=1  Score=30.67  Aligned_cols=46  Identities=30%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++++||=.|+| .|..+..+++. +..+|+++|.+++.++.+++
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            345578899999875 34455555654 44479999999998888865

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.36  E-value=0.16  Score=35.70  Aligned_cols=46  Identities=26%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      .+..+|-+|-|.|.+...+. ..+...++++++.|.|++.+.+.+..
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f  341 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF  341 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence            34578889999999988877 46667999999999999999887653

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=91.30  E-value=0.37  Score=32.36  Aligned_cols=40  Identities=20%  Similarity=0.099  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +.++|-.|||.|+++..++..+. .+-|-|.|--|+-...-
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~F  190 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSF  190 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHH
Confidence            56899999999999999998766 67777998888754433

>PRK07102 short chain dehydrogenase; Provisional

Probab=91.28  E-value=2.1  Score=27.00  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      +++-.| |+|.++..++    +.+ .+|++++.++...+...+..... +.+++++++|+.+.
T Consensus         3 ~vlItG-as~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   63 (243)
T PRK07102          3 KILIIG-ATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT   63 (243)
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence            577666 4455555544    334 48999998887665444433322 22788888887754

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.18  E-value=2.5  Score=26.58  Aligned_cols=58  Identities=21%  Similarity=0.325  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.++|=.|+ +|.++..++    +.+ .+|++++-++.....+.......+.++.++.+|+.+
T Consensus         2 ~~~~ilItGa-s~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~   63 (250)
T TIGR03206         2 KDKTAIVTGG-GGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD   63 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            3457777775 445544444    333 489999988877666555554444467788888765

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.17  E-value=0.84  Score=32.46  Aligned_cols=67  Identities=15%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeCCh-------------------hHHHHHHHHhhccCC--ceeEEEcc
Q 033605           48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD  104 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~s~-------------------~~~~~a~~~~~~~~~--~v~~~~~d  104 (115)
                      .+.+||-+||| .|.- ..-++..+..+|..+|++.                   .-...|.+.+.....  ++...+.+
T Consensus        11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan   90 (603)
T KOG2013|consen   11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN   90 (603)
T ss_pred             ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence            66799999998 6663 3344455666777777432                   223445555554443  78888888


Q ss_pred             ccCCcccCCC
Q 033605          105 IRNLEWRGKY  114 (115)
Q Consensus       105 ~~~~~~~~~f  114 (115)
                      +.+..+.-.|
T Consensus        91 I~e~~fnv~f  100 (603)
T KOG2013|consen   91 IKEPKFNVEF  100 (603)
T ss_pred             ccCcchHHHH
Confidence            8776554333

>PRK05650 short chain dehydrogenase; Provisional

Probab=91.13  E-value=2.8  Score=26.93  Aligned_cols=56  Identities=21%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|-.|+ +|.++..++    +.+ .+|+.++.++...+.........+.++.++.+|+.+.
T Consensus         2 ~vlVtGa-sggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   61 (270)
T PRK05650          2 RVMITGA-ASGLGRAIALRWAREG-WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDY   61 (270)
T ss_pred             EEEEecC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence            4665564 444444443    333 4888888887766655554444444677788887653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.13  E-value=0.87  Score=33.38  Aligned_cols=55  Identities=18%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             CCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           49 NKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..+|+=+||| .|............+++.+|.+++.++.+++.      ...++.||..+.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~  455 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMD  455 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHH
Confidence            3577777777 44444443333344899999999999988652      3467888876643

>PRK07024 short chain dehydrogenase; Provisional

Probab=91.10  E-value=2.3  Score=27.05  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++|=.|+ +|.++..++    +.+ .+|+.++.+++.+....+.....+ ++.++.+|+.+
T Consensus         3 ~~vlItGa-s~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~   61 (257)
T PRK07024          3 LKVFITGA-SSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAA-RVSVYAADVRD   61 (257)
T ss_pred             CEEEEEcC-CcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCC
Confidence            35666665 445444444    344 489999988877665544443322 67788888765

>PRK06949 short chain dehydrogenase; Provisional

Probab=91.08  E-value=2.7  Score=26.65  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++++|-.| |+|.++..++    +.+ .+|++++.+++.++.........+.++.++.+|+.+
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~   69 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD   69 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence            567888887 5555555544    333 489999998887766655544333367777777754

>PRK05854 short chain dehydrogenase; Provisional

Probab=91.05  E-value=2.5  Score=28.06  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=36.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|. +..++    +.+ .+|+.+.-+++..+.+.+.....  +.++.++.+|+.+.
T Consensus        13 ~gk~~lITGas~GI-G~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~   77 (313)
T PRK05854         13 SGKRAVVTGASDGL-GLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL   77 (313)
T ss_pred             CCCEEEEeCCCChH-HHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence            56788877765444 44333    444 48999888877665555444332  22678888888664

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.04  E-value=2.6  Score=26.48  Aligned_cols=59  Identities=17%  Similarity=0.048  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .++++++-+++.+....+.....+.++.++++|+.+.
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   68 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADP   68 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            4567886664 555555554    334 4899998887766655554443344678888887653

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.03  E-value=1.5  Score=28.53  Aligned_cols=46  Identities=39%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||=.|+| .|..+..+++ .+...|+++|.++...+.+++.
T Consensus       117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~  164 (280)
T TIGR03366       117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF  164 (280)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            34467888888875 4444555555 3444599999999888777653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.02  E-value=1.4  Score=29.92  Aligned_cols=47  Identities=32%  Similarity=0.372  Sum_probs=33.2

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ....++.+||=.|+| .|..+..+++. +..+|+++|.+++..+.+++.
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~  229 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL  229 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence            344567888888875 34455556654 444799999999988887653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK07791 short chain dehydrogenase; Provisional

Probab=90.93  E-value=2.9  Score=27.31  Aligned_cols=59  Identities=22%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh---------hHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~---------~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|++.|.   ++..+++.+. +|+.++.+.         ..+....+.....+.++.++..|+.+
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~   75 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD   75 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC
Confidence            56788888876554   2233344444 788887654         44444333333333356677777765

>PRK07576 short chain dehydrogenase; Provisional

Probab=90.88  E-value=3  Score=26.80  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|. +|.++..++    .. ..+|++++.++..+..........+.++.++.+|+.+
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   69 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD   69 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC
Confidence            5668887774 455544443    33 3489999988776655544444333356677777754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=90.86  E-value=2.7  Score=26.37  Aligned_cols=58  Identities=24%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++++|=.|+ +|.++..++    +.+ .+|++++-++.............+.++.++.+|+.+
T Consensus         5 ~~~~ilItGa-sg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~   66 (251)
T PRK12826          5 EGRVALVTGA-ARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRD   66 (251)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence            4567886665 455555544    344 489999988766655544444433367888888765

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=90.78  E-value=1.5  Score=25.44  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             CCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChh
Q 033605           48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSD   82 (115)
Q Consensus        48 ~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~   82 (115)
                      +..+++|+|-|.=. .+..+.+.+ ..|+++|+.+.
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~   47 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR   47 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc
Confidence            45599999998655 445555666 59999999997

; PDB: 2K4M_A.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=90.75  E-value=1.8  Score=28.84  Aligned_cols=47  Identities=17%  Similarity=0.121  Sum_probs=33.4

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ....++.+||=.|+| .|..+..+++....++++++.+++..+.+++.
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~  208 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL  208 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence            345578899999975 34445556654345899999999988887764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.57  E-value=1.8  Score=27.33  Aligned_cols=44  Identities=32%  Similarity=0.385  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           47 VSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        47 ~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .++.+||..|+|. |.....+++....++++++.++...+.++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~  177 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL  177 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence            5778999999985 5566666654446999999998887776543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=90.47  E-value=0.55  Score=30.01  Aligned_cols=59  Identities=19%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .-++..+++.+...++.+.+|.--|.|..+..+.+ .+..+++++|-+|-+.+.|.....
T Consensus        29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~   88 (303)
T KOG2782|consen   29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD   88 (303)
T ss_pred             ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence            44566666777777899999999999999999886 455788999999998888776553

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.43  E-value=1.1  Score=32.39  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             CeEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++=+|||  ..+..++   +....+++.+|.+++.++.+++.      ....+.+|+.+.
T Consensus       418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~  471 (558)
T PRK10669        418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANE  471 (558)
T ss_pred             CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCH
Confidence            456656655  4444444   22234899999999998888642      356778887653

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.36  E-value=1.5  Score=29.69  Aligned_cols=45  Identities=38%  Similarity=0.544  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|+| .|..+..+++. +..+|+++|.++...+.+++
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            44567788888875 34455556654 44479999999998888765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.29  E-value=1.7  Score=28.60  Aligned_cols=44  Identities=32%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           46 DVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        46 ~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ..++.+||..|+| .|..+..+++....+|++++.++...+.+++
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            4466788888876 4667777776444589999999988877754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.27  E-value=3.2  Score=26.41  Aligned_cols=54  Identities=19%  Similarity=0.119  Sum_probs=32.8

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|-.|++ |.++..++    +.+ .+|+.++.+++.++.......  +.++.++++|+.+.
T Consensus         3 ~vlItGas-g~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~   60 (260)
T PRK08267          3 SIFITGAA-SGIGRATALLFAAEG-WRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDR   60 (260)
T ss_pred             EEEEeCCC-chHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCH
Confidence            56666654 44444433    444 489999888876665544332  23677888887653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.24  E-value=0.83  Score=28.11  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=14.9

Q ss_pred             HhcCCCeEEEEeCChhHHHHHHH
Q 033605           67 TLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        67 ~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ++.+. +|+|+|++++.++..++
T Consensus        20 A~~G~-~V~g~D~~~~~v~~l~~   41 (185)
T PF03721_consen   20 AEKGH-QVIGVDIDEEKVEALNN   41 (185)
T ss_dssp             HHTTS-EEEEE-S-HHHHHHHHT
T ss_pred             HhCCC-EEEEEeCChHHHHHHhh
Confidence            34555 99999999998877653

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=90.22  E-value=2  Score=28.86  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++.+||=.|+|. |..+..+++....+++++|.+++.++.+++
T Consensus       162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence            3445678999999853 555566665434489999999998888765

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.13  E-value=2  Score=29.93  Aligned_cols=54  Identities=20%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ...+++=+|+  |.++..+++   .....++.+|.+++.++.++....    ++.++.+|..+
T Consensus       230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~----~~~~i~gd~~~  286 (453)
T PRK09496        230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP----NTLVLHGDGTD  286 (453)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC----CCeEEECCCCC
Confidence            3567887777  555444442   234489999999998887766432    35677777653

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=90.00  E-value=3.2  Score=26.48  Aligned_cols=54  Identities=17%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++|=.|++. .++..++    +.+ .+|+.++.++..++.+.+.....+ ++.++.+|+.+
T Consensus         2 ~vlItGas~-gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d   59 (259)
T PRK08340          2 NVLVTASSR-GIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEYG-EVYAVKADLSD   59 (259)
T ss_pred             eEEEEcCCc-HHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCC
Confidence            456666543 3443333    344 488888888776665555443333 56667777654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.97  E-value=4  Score=26.93  Aligned_cols=59  Identities=24%  Similarity=0.180  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh-hHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.+. ...+...+.....+.++.++.+|+.+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d   73 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ   73 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence            56788877776544   2333444544 888888753 33333333333334467778888765

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.72  E-value=3.5  Score=25.78  Aligned_cols=57  Identities=25%  Similarity=0.300  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|++ |.++..++    +.+ .+|++++-+++....+.+.....+ ++.++.+|+.+
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~   64 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSS   64 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCC
Confidence            45688888875 44444443    334 489999998877665544433322 56777888765

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.72  E-value=3.5  Score=25.90  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.++|=.|++ |.++..+    ++.+. +|++++-++............ +.++.++.+|+.+
T Consensus         4 ~~~~vlItGas-g~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~   64 (251)
T PRK07231          4 EGKVAIVTGAS-SGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSD   64 (251)
T ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCC
Confidence            45677777754 3444333    34444 799999998766655444432 3357778887754

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=89.68  E-value=3.7  Score=26.16  Aligned_cols=57  Identities=19%  Similarity=0.386  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++.|. +..    +++.+. +|+.++.+..  +...+.....+.++.++..|+.+.
T Consensus         7 ~~k~~lItGas~gI-G~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~   67 (251)
T PRK12481          7 NGKVAIITGCNTGL-GQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQ   67 (251)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCH
Confidence            56788888865544 333    334444 8888765432  222233333334677788887653

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=89.67  E-value=3.7  Score=26.04  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++ |.++..++    +.+ .+|+.++.++..+..........+.++.++.+|+.+.
T Consensus         8 ~~k~~lItGas-~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   70 (254)
T PRK08085          8 AGKNILITGSA-QGIGFLLATGLAEYG-AEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHK   70 (254)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCH
Confidence            56678877754 44444433    444 4899999887766555444443333566777777553

>PRK06181 short chain dehydrogenase; Provisional

Probab=89.34  E-value=4  Score=25.99  Aligned_cols=56  Identities=21%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|=.| |+|.++..++    +.+ .+|++++-++...+...+.....+.++.++.+|+.+.
T Consensus         3 ~vlVtG-asg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   62 (263)
T PRK06181          3 VVIITG-ASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDA   62 (263)
T ss_pred             EEEEec-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            566555 4455555544    333 4899999887666555544444444677778887653

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=89.13  E-value=4.2  Score=25.90  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++.|.   ++..+++.+. +|+.++.++ ..+.+.+.....+.++.++.+|+.+.
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~   75 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKP   75 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            56788888876544   2233334444 888887763 33334443333333677788887653

>PRK09291 short chain dehydrogenase; Provisional

Probab=89.05  E-value=4.1  Score=25.76  Aligned_cols=56  Identities=20%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++|=.|+ +|.++..++    +.+ .+|+++.-++.............+.++.++.+|+.+
T Consensus         3 ~~vlVtGa-sg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~   62 (257)
T PRK09291          3 KTILITGA-GSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD   62 (257)
T ss_pred             CEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC
Confidence            36776665 444444443    333 589998887766555544444334467777787755

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=89.04  E-value=1.5  Score=31.26  Aligned_cols=45  Identities=20%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHh---cC--CCeEEEEeCChhHHHHHHHHhh
Q 033605           48 SNKVVADFGCGCGTLGAAATL---LG--ADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~---~~--~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      +...+.|+.||+|.+.....+   .+  ...++|.|..+.+...++.+..
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~  266 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI  266 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence            446899999999998876542   11  2479999999999999998753

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.97  E-value=2.6  Score=28.03  Aligned_cols=48  Identities=29%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             hcCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           43 SFGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .....++.+||=.|+| .|..+..+++. +..+|++++.+++..+.+++.
T Consensus       158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~  207 (339)
T cd08239         158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL  207 (339)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            3344567888888765 33344555553 443499999999888877553

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.93  E-value=2.2  Score=28.73  Aligned_cols=45  Identities=44%  Similarity=0.680  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|+| .|..+..+++. +..+|+++|.++...+.+++
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~  219 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE  219 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            34567888888875 34455556654 44469999999998888765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=88.82  E-value=5.1  Score=26.55  Aligned_cols=59  Identities=19%  Similarity=0.139  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+. |.++..++    +.+ .+|+.++-++...+.+.+.....+.++.++.+|+.+.
T Consensus         5 ~~k~vlVTGas-~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   67 (322)
T PRK07453          5 AKGTVIITGAS-SGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDL   67 (322)
T ss_pred             CCCEEEEEcCC-ChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCH
Confidence            45677777754 44444444    344 4899998877666554444332222677888887653

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=88.61  E-value=0.92  Score=34.06  Aligned_cols=45  Identities=18%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ..+..++|...|-|.+.++.++.+. .|+++|++|.+.-..+..+.
T Consensus        89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlE  133 (875)
T COG1743          89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLE  133 (875)
T ss_pred             ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHh
Confidence            3567899999999999999999975 99999999999887776554

>PLN02780 ketoreductase/ oxidoreductase

Probab=88.60  E-value=3.9  Score=27.30  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-C-CceeEEEcccc
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-E-LDIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~-~~v~~~~~d~~  106 (115)
                      .+.++|=.|++.|.   ++..+++.+. +|+.++.+++.++...+..... + .++..+..|+.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~  114 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS  114 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence            35688888865543   3333444544 8999999998877665554432 2 25666667765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=88.56  E-value=4.7  Score=25.75  Aligned_cols=55  Identities=20%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++.|. +..    +++.+ .+|+.++-++..++...+..   +.++.++++|+.+
T Consensus         5 ~~k~vlVtGas~gI-G~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~   63 (263)
T PRK06200          5 HGQVALITGGGSGI-GRALVERFLAEG-ARVAVLERSAEKLASLRQRF---GDHVLVVEGDVTS   63 (263)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCC
Confidence            56688888865433 333    33444 48999998877665544332   2245667777654

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=88.54  E-value=0.65  Score=26.27  Aligned_cols=34  Identities=32%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           58 GCGTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        58 G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      |.|..+..+++....+|+++|.++..++.+++.-
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G   34 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG   34 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc
Confidence            4577788888643479999999999998887643

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.54  E-value=1.7  Score=31.73  Aligned_cols=52  Identities=17%  Similarity=0.250  Sum_probs=34.0

Q ss_pred             CeEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           50 KVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+|+=+|+  |+.+..++   .....+++.+|.+++.++.+++.      ...++.||+.+.+
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~  455 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLE  455 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHH
Confidence            45655554  55554444   22344899999999999988652      3467888876543

>PRK06701 short chain dehydrogenase; Provisional

Probab=88.44  E-value=5.2  Score=26.18  Aligned_cols=59  Identities=14%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChh-HHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSD-SLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++. .++..    +++.+ .+|+.++.++. ..+.........+.++.++.+|+.+.
T Consensus        45 ~~k~iLItGasg-gIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~  108 (290)
T PRK06701         45 KGKVALITGGDS-GIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDE  108 (290)
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence            567888888644 33433    33444 48888877643 23333333333344677888887653

>PRK12829 short chain dehydrogenase; Provisional

Probab=88.43  E-value=4.7  Score=25.60  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++.++|-.|++ |.++..++    +.+. +|++++-++...+...+.....  ++.++.+|+.+
T Consensus         9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~   69 (264)
T PRK12829          9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVAD   69 (264)
T ss_pred             cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCC
Confidence            367789988875 55554444    3444 8999998877665544433221  45677777654

>PRK06197 short chain dehydrogenase; Provisional

Probab=88.13  E-value=5.6  Score=26.15  Aligned_cols=60  Identities=22%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~  109 (115)
                      .++++|=.|+ +|.++..++    +.+. +|+.++-++.....+.+.....  +.++.++.+|+.+.+
T Consensus        15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~   80 (306)
T PRK06197         15 SGRVAVVTGA-NTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA   80 (306)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence            5677886665 445554444    3444 8888888776665544443322  226778888886643

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.03  E-value=4.8  Score=25.23  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+.++|=.|+ +|.++..++    +.+. +|+.++-++...+.........+.++.++.+|+.+.
T Consensus         6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   68 (239)
T PRK07666          6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDY   68 (239)
T ss_pred             CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCH
Confidence            3457777774 666666554    3344 899999887765554443333333677788887543

>PRK08251 short chain dehydrogenase; Provisional

Probab=87.79  E-value=5  Score=25.25  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=36.5

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~  108 (115)
                      +++|-.| |+|.++..++    +.+ .+|+.++-++...+.........  +.++.++.+|+.+.
T Consensus         3 k~vlItG-as~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   65 (248)
T PRK08251          3 QKILITG-ASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH   65 (248)
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence            4677666 4566665555    333 58999998887776655544332  23678888887754

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=87.77  E-value=3.4  Score=27.96  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++.+||=.|+| .|..+..+++. +..+|++++.+++..+.+++
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~  230 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK  230 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            345578888888864 33344555553 44489999999988887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=87.68  E-value=3.6  Score=27.85  Aligned_cols=45  Identities=36%  Similarity=0.491  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|+| .|..+..+++. +...|+++|.+++..+.+++
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            44577888888865 34445555554 44479999999998887754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08230 glucose_DH Glucose dehydrogenase

Probab=87.64  E-value=3.8  Score=27.54  Aligned_cols=43  Identities=19%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeC---ChhHHHHHHH
Q 033605           47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDI---DSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~---s~~~~~~a~~   89 (115)
                      .++.+||=.|+| .|.++..+++....+|++++.   ++...+.+++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence            467789988876 455566666543448999986   6777776654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08703 short chain dehydrogenase; Provisional

Probab=87.63  E-value=5.1  Score=25.13  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++...+.........+. .+.++..|+.
T Consensus         5 ~~k~vlItG~-sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~   66 (239)
T PRK08703          5 SDKTILVTGA-SQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM   66 (239)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence            5568888885 444444444    333 4899999888766555444432221 3455556553

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.63  E-value=1.1  Score=25.58  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChh
Q 033605           48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSD   82 (115)
Q Consensus        48 ~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~   82 (115)
                      ...+|+|+|-|-=. .+..+++++. .++++|+++.
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~   47 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK   47 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence            44599999877544 3455556664 9999999997

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.61  E-value=5.5  Score=25.48  Aligned_cols=56  Identities=29%  Similarity=0.351  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..+    ++.+. +|+.++.++...+...+..   +.++.++.+|+.+.
T Consensus         5 ~~k~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~   64 (261)
T PRK08265          5 AGKVAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDD   64 (261)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCH
Confidence            45678877754 3444333    34444 8999998876544433322   22577778887654

>PRK05855 short chain dehydrogenase; Validated

Probab=87.58  E-value=5.7  Score=28.36  Aligned_cols=59  Identities=25%  Similarity=0.276  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+.++|=+|+ +|.++..++    +.+. +|+.++-++...+...+.....+.++.++.+|+.+.
T Consensus       314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~  376 (582)
T PRK05855        314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDA  376 (582)
T ss_pred             CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence            3466776665 555555444    3444 899999988777666555554444678888888654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.55  E-value=2.2  Score=30.64  Aligned_cols=43  Identities=23%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++.+++=+|+| .|..+..+++...+.|+++|.++..++.++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            356899999999 4566666665434479999999998887765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=87.54  E-value=5.3  Score=25.22  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.| |+|.++..+++.   ...+|++++-++.............+.++.++.+|+.+
T Consensus         3 ~~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   64 (258)
T PRK12429          3 KGKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD   64 (258)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            345677555 456666666531   23489999988877666555544444467778887754

>PRK06720 hypothetical protein; Provisional

Probab=87.41  E-value=4.6  Score=24.41  Aligned_cols=59  Identities=29%  Similarity=0.349  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|.+.|.   ....+++.+ .+|+.+|.++.......+.....+..+.++..|+.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~   76 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK   76 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence            55677777765543   223333444 489889988776655544443333355666777654

>PRK07201 short chain dehydrogenase; Provisional

Probab=87.28  E-value=6.8  Score=28.71  Aligned_cols=59  Identities=19%  Similarity=0.240  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|+ +|.++..++    +.+ .+|+.++-+++.++.........+.++.++.+|+.+.
T Consensus       370 ~~k~vlItGa-s~giG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~  432 (657)
T PRK07201        370 VGKVVLITGA-SSGIGRATAIKVAEAG-ATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDS  432 (657)
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence            3556776665 445554444    344 4999999988877666555544444678888887654

>PLN02827 Alcohol dehydrogenase-like

Probab=87.22  E-value=3.9  Score=27.95  Aligned_cols=45  Identities=31%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|+| .|.....+++ .+...|+++|.++...+.+++
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            44568899988865 3444455554 454469999999988877754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=87.17  E-value=6.1  Score=26.39  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCC-CChHHHHHH-hcCCCeEEEEeCChhHHHH
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCG-CGTLGAAAT-LLGADQVIAIDIDSDSLEL   86 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~-~~~~~~v~~vD~s~~~~~~   86 (115)
                      ....++......+..++.+|+=+|+| .|......+ ..+...|+.++.+++....
T Consensus       162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         162 SSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            33334444444444578899999986 444433333 3355689999999876533

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length

Probab=87.12  E-value=0.22  Score=27.18  Aligned_cols=15  Identities=40%  Similarity=0.645  Sum_probs=11.1

Q ss_pred             eEEEEcCCCChHHHH
Q 033605           51 VVADFGCGCGTLGAA   65 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~   65 (115)
                      -=+|||||.|..--.
T Consensus         5 gNIDIGcG~GNTmda   19 (124)
T PF07101_consen    5 GNIDIGCGAGNTMDA   19 (124)
T ss_pred             CccccccCCCcchhh
Confidence            457999999986433

>TIGR02415 23BDH acetoin reductases

Probab=87.08  E-value=5.7  Score=25.08  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=30.7

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++|=.|+ +|.++..++    +.+ .+|+.++-++.......+.....+.++.++.+|+.+
T Consensus         2 ~~lItG~-sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~   60 (254)
T TIGR02415         2 VALVTGG-AQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD   60 (254)
T ss_pred             EEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence            4555564 444444443    333 478888877665555444444334456777777654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=87.00  E-value=6.8  Score=25.90  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=22.6

Q ss_pred             CCCCeEEEEcCCCChH-H--HHHHhcCCCeEEEEeCCh
Q 033605           47 VSNKVVADFGCGCGTL-G--AAATLLGADQVIAIDIDS   81 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~-~--~~~~~~~~~~v~~vD~s~   81 (115)
                      .+++++|=+|+| |.- +  ..++..+..+|+.++.++
T Consensus       124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            356789999997 442 2  223355666799999886

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=86.70  E-value=5.8  Score=27.92  Aligned_cols=41  Identities=27%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHH
Q 033605           47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELA   87 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a   87 (115)
                      ..+++|+=+|+| .|......++....+|+.+|.++.....+
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A  251 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA  251 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH
Confidence            378899999998 44444444443344999999998765444

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=86.68  E-value=5.6  Score=27.43  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHH----Hhc----CCCeEEEEeC----ChhHHHHHHHHhhc----cCCceeEEE
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAA----TLL----GADQVIAIDI----DSDSLELASENAAD----LELDIDFVQ  102 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~----~~~----~~~~v~~vD~----s~~~~~~a~~~~~~----~~~~v~~~~  102 (115)
                      |++.....+.-+|+|+|.|.|.--..+    +..    +.-++||++.    +...++...+++.+    .++..+|..
T Consensus       102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~  180 (374)
T PF03514_consen  102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP  180 (374)
T ss_pred             HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence            444444556679999999999844333    332    1248999999    77777666666543    344444444

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK06138 short chain dehydrogenase; Provisional

Probab=86.58  E-value=6  Score=24.89  Aligned_cols=58  Identities=22%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.||. |.++..++    +.+ .+|++++-++........... .+.++.++.+|+.+.
T Consensus         4 ~~k~~lItG~s-g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~   65 (252)
T PRK06138          4 AGRVAIVTGAG-SGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSA   65 (252)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCH
Confidence            45678878874 44444433    444 489999877766554444333 233677888887653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=86.56  E-value=6.1  Score=24.92  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++.............+. ++.++.+|+.
T Consensus        11 ~~k~vlItG~-~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~   72 (247)
T PRK08945         11 KDRIILVTGA-GDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL   72 (247)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence            6678888884 555555444    333 4999999988766555544443332 5666666664

>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=86.42  E-value=0.42  Score=31.38  Aligned_cols=52  Identities=17%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ..++..+++.+|...  +.+|+.||.|+..+.+...  .+++.-|++++.+..-+.
T Consensus        13 ~~l~~~i~~~lP~~~--~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lvn~y~~   64 (274)
T COG0338          13 SKLLDQIIPHLPEGV--SYIEPFVGGGAVFINLAAK--KKYILNDINPDLVNLYNI   64 (274)
T ss_pred             HHHHHHHHHhCCCCc--eeeCCccCcceeeeehhhh--hhhhHhcCCHHHHHHHHH
Confidence            345666777766433  9999999999999888653  488999999999865443

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=86.28  E-value=3.4  Score=21.76  Aligned_cols=46  Identities=13%  Similarity=0.126  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChH-HHHHH-hcC-CCeEEEEeCCh
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTL-GAAAT-LLG-ADQVIAIDIDS   81 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~-~~~~~-~~~-~~~v~~vD~s~   81 (115)
                      .++.+...-...-+++||-+||-+|+- +..++ .++ .+..+|+-...
T Consensus        26 qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk   74 (78)
T PF12242_consen   26 QIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK   74 (78)
T ss_dssp             HHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred             HHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence            344443332333457999999999983 33333 333 35788876543

>PRK06914 short chain dehydrogenase; Provisional

Probab=86.15  E-value=7  Score=25.18  Aligned_cols=58  Identities=22%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCC
Q 033605           49 NKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL  108 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~  108 (115)
                      +.++|-.|++ |.++..+    ++.+ .+|++++-++...+.........+  .+++++.+|+.+.
T Consensus         3 ~k~~lItGas-g~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~   66 (280)
T PRK06914          3 KKIAIVTGAS-SGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ   66 (280)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence            3467777753 3334333    3444 489999877766655544333322  2678888888653

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=86.15  E-value=2.3  Score=27.73  Aligned_cols=47  Identities=17%  Similarity=0.200  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhH----HHHHHHHh
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDS----LELASENA   91 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~----~~~a~~~~   91 (115)
                      -..++.+||=||+++|....+++..  +..-|+++|.|+..    +..|+++.
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt  205 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT  205 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC
Confidence            4457889999999999999988863  33579999998755    44444443

>TIGR00936 ahcY adenosylhomocysteinase

Probab=86.11  E-value=2.7  Score=29.31  Aligned_cols=42  Identities=26%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605           47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELAS   88 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~   88 (115)
                      ..+++|+=+|+| .|......++....+|+++|.++.....+.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~  235 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA  235 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH
Confidence            478899999999 455555555543458999999987654443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02253 xanthoxin dehydrogenase

Probab=86.08  E-value=7.1  Score=25.19  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|+ +|.++..++    +.+ .+|+.++.++...+........ +.++.++.+|+.+.
T Consensus        17 ~~k~~lItGa-s~gIG~~la~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~   78 (280)
T PLN02253         17 LGKVALVTGG-ATGIGESIVRLFHKHG-AKVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVE   78 (280)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCH
Confidence            4567887774 455555444    343 4899999887665544433321 22577788887653

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=85.68  E-value=7.1  Score=24.81  Aligned_cols=59  Identities=17%  Similarity=0.181  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|+.++.++. ...........+.++.++.+|+.+.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~   68 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETY   68 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCH
Confidence            55678877765433   223333444 48888888753 2223333333333566777777653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.63  E-value=6  Score=25.17  Aligned_cols=52  Identities=23%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             eEEEEcCC-CChHH-HHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           51 VVADFGCG-CGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G-~G~~~-~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++=+||| .|+.. ..|++.+. .|+.+|.+++.++.....-.    .+..+++|..+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~   55 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL----DTHVVIGDATD   55 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc----ceEEEEecCCC
Confidence            45666776 34432 33334445 99999999998877433111    35667777654

>PRK08628 short chain dehydrogenase; Provisional

Probab=85.57  E-value=7.1  Score=24.77  Aligned_cols=57  Identities=28%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.++|=.|++ |.++..++    +.+ .+++.++-++...+.. +.....+.++.++.+|+.+
T Consensus         6 ~~~~ilItGas-ggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~   66 (258)
T PRK08628          6 KDKVVIVTGGA-SGIGAAISLRLAEEG-AIPVIFGRSAPDDEFA-EELRALQPRAEFVQVDLTD   66 (258)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcC-CcEEEEcCChhhHHHH-HHHHhcCCceEEEEccCCC
Confidence            45677777754 44554444    344 4788888777655333 2233334467788888764

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=85.38  E-value=1.7  Score=29.05  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccC-----CceeEEEccc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDI  105 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~  105 (115)
                      ...++++|=+|.|.|.......++. ..++.-+|+....++..++.....-     .++.+.-||.
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG  184 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG  184 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH
Confidence            3578899999999999998888763 3689999999999999888766432     2677777763

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=85.28  E-value=2.2  Score=28.14  Aligned_cols=42  Identities=19%  Similarity=0.073  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           48 SNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ++.++|=+||| .|.++..+++ .+...|+++|.++..++.+..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~  187 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG  187 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence            56678888876 5556666665 455557788999888777654

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=85.25  E-value=7.5  Score=24.77  Aligned_cols=61  Identities=16%  Similarity=0.159  Sum_probs=43.6

Q ss_pred             CCCCCCeEEEEcCCCCh--HHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           45 GDVSNKVVADFGCGCGT--LGAAAT---LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~--~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      ...+-+.+++..|+.|.  .++.|+   ++...++++|-..+..+...++.....+.  -++|+.++.
T Consensus        38 AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   38 AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            44566789999766443  344443   45566999999999988888888877766  368888773

The function of this family is unknown.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=85.17  E-value=3.1  Score=25.43  Aligned_cols=41  Identities=27%  Similarity=0.272  Sum_probs=25.0

Q ss_pred             EEEEcCCCCh--HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           52 VADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        52 vLDlG~G~G~--~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      |.=+|+|+=.  ++..++..+ -+|+.+|.+++.++.+++....
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~   44 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIER   44 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHH
Confidence            4446776322  223333454 4999999999999888776554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=85.16  E-value=5.4  Score=26.98  Aligned_cols=45  Identities=33%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|+| .|..+..+++. +..+|+++|.++...+.+++
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~  227 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE  227 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            44567888888765 33444555553 44479999999988887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK05872 short chain dehydrogenase; Provisional

Probab=85.02  E-value=8.6  Score=25.22  Aligned_cols=57  Identities=21%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|++.| ++..+    ++.+ .+|+.++.+++.++...+.... +..+..+.+|+.+
T Consensus         8 ~gk~vlItGas~g-IG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d   68 (296)
T PRK05872          8 AGKVVVVTGAARG-IGAELARRLHARG-AKLALVDLEEAELAALAAELGG-DDRVLTVVADVTD   68 (296)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCC
Confidence            5678887775543 33333    3444 4899999888776655444332 2244555566654

>PRK07774 short chain dehydrogenase; Provisional

Probab=84.78  E-value=7.6  Score=24.43  Aligned_cols=59  Identities=24%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.| |+|.++..++    +.+ .+|++++-++.............+.++.++..|+.+.
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   67 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDP   67 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            456777777 4555555554    344 4899999887655544444333232566777777654

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.68  E-value=5  Score=25.30  Aligned_cols=45  Identities=27%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ....+..+|-+|.- +|.+...++.. ..+|+.+|+.|.|......+
T Consensus        41 ~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp~~   86 (254)
T COG4017          41 EGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLPNN   86 (254)
T ss_pred             cccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCCCC
Confidence            34577899999987 88888877765 55999999999887655443

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=84.63  E-value=7.8  Score=24.40  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=34.3

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|=.| |+|.++..++    +.+. +|++++-++...+.........+.++.++.+|+.+.
T Consensus         3 ~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   62 (255)
T TIGR01963         3 TALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKE   62 (255)
T ss_pred             EEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence            456555 4556555555    3344 899999887766555554433333677777777653

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06153 hypothetical protein; Provisional

Probab=84.48  E-value=2  Score=29.82  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=25.9

Q ss_pred             CCCeEEEEcCC-CChHHHH-HHhcCCCeEEEEeCC
Q 033605           48 SNKVVADFGCG-CGTLGAA-ATLLGADQVIAIDID   80 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~~~~-~~~~~~~~v~~vD~s   80 (115)
                      +..+|+=+||| +|..... +++.+..+++.+|.+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            66799999998 7776555 557788899999954

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.40  E-value=9  Score=24.92  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCC-ChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGC-GTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~-G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. +.++..    +++.+. +|+.++.+....+.+++.....+.. .+++.|+.+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~   67 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKP   67 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCH
Confidence            456888888752 333333    334444 8888887753222333322222223 4566776653

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=84.39  E-value=3.7  Score=26.32  Aligned_cols=46  Identities=28%  Similarity=0.291  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHhcCCCe-EEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCGC-GTLGAAATLLGADQ-VIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~-v~~vD~s~~~~~~a~~~   90 (115)
                      ...++.++|-.|+|. |..+..+++....+ +++++.+++..+.+++.
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~  141 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL  141 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence            445678888888763 55556666543345 99999998888776654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.37  E-value=1.7  Score=28.05  Aligned_cols=55  Identities=20%  Similarity=0.305  Sum_probs=37.0

Q ss_pred             CeEEEEcCCCChHHHHHHhc--C----C----CeEEEEeCChhH--------------HHHHHHHhhccCC-ceeEEEcc
Q 033605           50 KVVADFGCGCGTLGAAATLL--G----A----DQVIAIDIDSDS--------------LELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~--~----~----~~v~~vD~s~~~--------------~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      .+++|++...|.++..+++.  .    .    ..+++||+.+.+              ...++..+...+. ..++|.+|
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcD  122 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCD  122 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence            58999999999999888842  1    1    139999998854              2444444444443 56666655

>PRK08278 short chain dehydrogenase; Provisional

Probab=84.35  E-value=8.8  Score=24.79  Aligned_cols=59  Identities=17%  Similarity=0.149  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhH-------HHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-------LELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..++    +.+ .+|+.++-+...       +....+.....+.++.++.+|+.+.
T Consensus         5 ~~k~vlItGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~   74 (273)
T PRK08278          5 SGKTLFITGASR-GIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDE   74 (273)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCH
Confidence            456788777654 4444443    444 488888865431       2222233333344677788887654

>PRK06198 short chain dehydrogenase; Provisional

Probab=84.15  E-value=8.4  Score=24.43  Aligned_cols=59  Identities=25%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++ |.++..++    +.+...|+.++-++.............+.++.++..|+.+
T Consensus         5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~   67 (260)
T PRK06198          5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD   67 (260)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC
Confidence            56678877754 44554444    3444338999887665544333333333356777777765

>PRK05599 hypothetical protein; Provisional

Probab=84.13  E-value=8.5  Score=24.43  Aligned_cols=36  Identities=6%  Similarity=0.146  Sum_probs=19.7

Q ss_pred             CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           72 DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        72 ~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      .+|+.++-+++.++...+.....+. .+.++.+|+.+
T Consensus        24 ~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d   60 (246)
T PRK05599         24 EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD   60 (246)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC
Confidence            4666666666655555444433332 35566666654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.94  E-value=6  Score=27.59  Aligned_cols=50  Identities=20%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             eEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           51 VVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +|+=+|+  |..+..+++   .....++++|.+++.++.++...     .+.++.+|..+
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----~~~~~~gd~~~   54 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----DVRTVVGNGSS   54 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----CEEEEEeCCCC
Confidence            4555555  677666663   22348999999999877765422     35666777643

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=83.89  E-value=11  Score=26.48  Aligned_cols=51  Identities=27%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCC-CChHHHHHH-hcCCCeEEEEeCChhHHHH
Q 033605           36 MLYTAENSFGDVSNKVVADFGCG-CGTLGAAAT-LLGADQVIAIDIDSDSLEL   86 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~-~~~~~~v~~vD~s~~~~~~   86 (115)
                      -++.....++..++.+|+=+|+| .|......+ ..+...++.++.++.....
T Consensus       169 Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~  221 (423)
T PRK00045        169 AVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE  221 (423)
T ss_pred             HHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence            34433333334577899999987 444444333 3555689999999877553

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=83.87  E-value=9.6  Score=24.86  Aligned_cols=72  Identities=17%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh-HHHHHHHHhhcc----CCceeEEEcccc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD-SLELASENAADL----ELDIDFVQCDIR  106 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~-~~~~a~~~~~~~----~~~v~~~~~d~~  106 (115)
                      ..+.++..+..........|+.||||--.-...+....  .+...|++-. .++.-++.+...    ..+.+++..|+.
T Consensus        66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~  142 (260)
T TIGR00027        66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR  142 (260)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence            44555555544332234469999999888777664322  3445555444 333333344432    227888888875

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK07831 short chain dehydrogenase; Provisional

Probab=83.76  E-value=9  Score=24.43  Aligned_cols=59  Identities=29%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCC---CChH-HHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-cCC-ceeEEEccccC
Q 033605           48 SNKVVADFGCG---CGTL-GAAATLLGADQVIAIDIDSDSLELASENAAD-LEL-DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G---~G~~-~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~v~~~~~d~~~  107 (115)
                      +++++|=.|++   .|.. +..+++.+. +|+.+|.++..++...+.... .+. ++.++.+|+.+
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   80 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS   80 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence            45678888853   3443 333334544 799999888777666554433 232 57778888765

>PRK07775 short chain dehydrogenase; Provisional

Probab=83.71  E-value=9.4  Score=24.64  Aligned_cols=59  Identities=14%  Similarity=0.030  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +.+++|=.|+ +|.++..++    +.+ .+|+.++-++.............+.++.++.+|+.+.
T Consensus         9 ~~~~vlVtGa-~g~iG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   71 (274)
T PRK07775          9 DRRPALVAGA-SSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDP   71 (274)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            3457777775 456555555    334 4788887776655544444433333567777777643

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=83.60  E-value=9  Score=24.34  Aligned_cols=56  Identities=21%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|-.|+. |.++..++    +. ..+|++++.++.  ....+.....+.++..+..|+.+
T Consensus         9 ~~k~~lItG~~-~gIG~a~a~~l~~~-G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~   68 (253)
T PRK08993          9 EGKVAVVTGCD-TGLGQGMALGLAEA-GCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRK   68 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHC-CCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCC
Confidence            56688888865 44444444    34 348888887543  11112222223356677777754

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=83.54  E-value=12  Score=26.23  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCC-CChHHHHHH-hcCCCeEEEEeCChhHHH
Q 033605           37 LYTAENSFGDVSNKVVADFGCG-CGTLGAAAT-LLGADQVIAIDIDSDSLE   85 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~-~~~~~~v~~vD~s~~~~~   85 (115)
                      ++.........++.+|+=+|+| .|......+ ..+..+|+.++.++....
T Consensus       168 v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~  218 (417)
T TIGR01035       168 VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE  218 (417)
T ss_pred             HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            3344444444578899999986 444333333 455468999999987654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=83.51  E-value=8.8  Score=24.15  Aligned_cols=57  Identities=18%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.| ++..++    +.+. +|++++-++.  ..+.+.....+.++.++..|+.+.
T Consensus         4 ~~k~vlItGas~g-IG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~   64 (248)
T TIGR01832         4 EGKVALVTGANTG-LGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDI   64 (248)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCH
Confidence            5678888887543 343333    4444 8888886542  223333333333567777777653

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=83.48  E-value=8.5  Score=23.98  Aligned_cols=41  Identities=29%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHH
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .++++++=+|.|  .++..++    +.+ .+|++.|.+++.+......
T Consensus        26 l~gk~v~I~G~G--~vG~~~A~~L~~~G-~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          26 LEGKTVAVQGLG--KVGYKLAEHLLEEG-AKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCEEEEECCC--HHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH
Confidence            467899999987  4444444    344 4999999999887776554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06940 short chain dehydrogenase; Provisional

Probab=83.43  E-value=9.8  Score=24.65  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             eEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|=-|+  |.++..+++.  ...+|+.++.++..++...+.....+.++.++.+|+.+.
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~   61 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSR   61 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCH
Confidence            4554554  4566666531  235899999887766555544443344677788887654

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=83.38  E-value=6.7  Score=25.88  Aligned_cols=46  Identities=28%  Similarity=0.281  Sum_probs=33.0

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++.+||-.|+| .|..+..+++....++++++.++...+.+++
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~  204 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK  204 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            344567788888886 6666666665444589999999988777644

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.13  E-value=3.3  Score=27.47  Aligned_cols=62  Identities=24%  Similarity=0.276  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      .+++||=-||-+|.   ++..+++.+. +++-+--....++...+...+...  ++..+++|+.+.+-
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~   77 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEES   77 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHH
Confidence            67889999988776   4455556655 666666667777766444444333  49999999987653

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=83.11  E-value=8.5  Score=25.46  Aligned_cols=47  Identities=11%  Similarity=0.094  Sum_probs=33.9

Q ss_pred             hcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           43 SFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .....++.+||=.|.  |.|..+..+++....++++++-+++..+.+++
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~  181 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK  181 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            334557789988884  46777777776545589999988887777754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK05717 oxidoreductase; Validated

Probab=83.09  E-value=9.5  Score=24.21  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+++++|=.|++ |.++..++    +.+ .+|+.+|.++.......+..   +.++.++.+|+.+
T Consensus         8 ~~~k~vlItG~s-g~IG~~~a~~l~~~g-~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~   67 (255)
T PRK05717          8 HNGRVALVTGAA-RGIGLGIAAWLIAEG-WQVVLADLDRERGSKVAKAL---GENAWFIAMDVAD   67 (255)
T ss_pred             cCCCEEEEeCCc-chHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHc---CCceEEEEccCCC
Confidence            356778867653 45444444    344 48999988765443332221   2256677777765

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=83.04  E-value=7.6  Score=26.20  Aligned_cols=44  Identities=16%  Similarity=0.074  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605           45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELAS   88 (115)
Q Consensus        45 ~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~   88 (115)
                      ...++.+||=.|+  |.|..+..+++....+|++++.+++..+.++
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK  200 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            4457889998887  3677777777654558999999988877765

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=82.86  E-value=9.9  Score=24.26  Aligned_cols=55  Identities=24%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++-+++.++.....   .+.++.++.+|+.+
T Consensus         4 ~~k~vlItGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~   62 (262)
T TIGR03325         4 KGEVVLVTGGA-SGLGRAIVDRFVAEG-ARVAVLDKSAAGLQELEAA---HGDAVVGVEGDVRS   62 (262)
T ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhh---cCCceEEEEeccCC
Confidence            45677777764 34444433    444 4899998877655544332   22256666676654

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR00518 alaDH alanine dehydrogenase

Probab=82.77  E-value=5.5  Score=27.37  Aligned_cols=43  Identities=26%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           48 SNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ++.+|+=+|+| .|..+...+.....+|+++|.++...+.+...
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~  209 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE  209 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh
Confidence            55678888887 45555555543234899999998876665443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06196 oxidoreductase; Provisional

Probab=82.76  E-value=11  Score=24.87  Aligned_cols=55  Identities=25%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++ |.++..++    +.+ .+|++++-+++..+.......    ++.++.+|+.+.
T Consensus        25 ~~k~vlITGas-ggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~   83 (315)
T PRK06196         25 SGKTAIVTGGY-SGLGLETTRALAQAG-AHVIVPARRPDVAREALAGID----GVEVVMLDLADL   83 (315)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCH
Confidence            56788888864 55555544    344 489999988776554433322    356777777654

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=82.74  E-value=4.6  Score=27.91  Aligned_cols=45  Identities=18%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEc-CC-CChHHHHHHhc---CCCeEEEEeCChhHHHHHHHH
Q 033605           46 DVSNKVVADFG-CG-CGTLGAAATLL---GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        46 ~~~~~~vLDlG-~G-~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ..++.+|+=+| +| .|..+..+++.   +..+|+++|.++..++.+++.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            34567888886 34 66677767754   335899999999999988875

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK09186 flagellin modification protein A; Provisional

Probab=82.40  E-value=10  Score=23.99  Aligned_cols=58  Identities=31%  Similarity=0.471  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhc-cCC-ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-LEL-DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~v~~~~~d~~~  107 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.+++.++........ .+. .+.++.+|+.+
T Consensus         3 ~~k~vlItGas-~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d   66 (256)
T PRK09186          3 KGKTILITGAG-GLIGSALVKAILEAG-GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD   66 (256)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence            45677777764 33444433    333 4888888887766655544422 122 45666778765

>TIGR00571 dam DNA adenine methylase (dam)

Probab=82.31  E-value=5.3  Score=26.07  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ++..+...++. ...+.+|+.||.|...+.+.   ...++.-|+++..+..-+.
T Consensus        14 l~~~i~~~~p~-~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li~~~~~   63 (266)
T TIGR00571        14 LLPEIKKHLPK-NFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLINLYKA   63 (266)
T ss_pred             HHHHHHHhcCc-ccCEEEEecCCcchhheeec---CcEEEEecCCHHHHHHHHH
Confidence            44555555553 23589999999999988653   2358889999998865443

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=82.29  E-value=7.6  Score=25.77  Aligned_cols=43  Identities=33%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++.+||-.|||. |..+..+++. +..++++++.++...+.+++
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~  208 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA  208 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            3678888888763 5566666654 43479999998887776554

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=82.22  E-value=12  Score=24.83  Aligned_cols=59  Identities=20%  Similarity=0.110  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++|-.|++.|.   ++..+++.+..+|+.+.-+++..+.+.+.....+.++.++.+|+.+.
T Consensus         4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   65 (314)
T TIGR01289         4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSL   65 (314)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence            466666655433   12223344424787777766655544443332222566666776543

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=82.05  E-value=1.8  Score=28.60  Aligned_cols=37  Identities=16%  Similarity=0.070  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhH
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS   83 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~   83 (115)
                      ..+++..+|+|...|..+..+.+.+- .|+++|--+.+
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma  245 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMA  245 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhcce-EEEEeccchhh
Confidence            35688999999999999999988755 99999977743

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=81.93  E-value=11  Score=23.98  Aligned_cols=56  Identities=21%  Similarity=0.116  Sum_probs=33.3

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhc-cC-CceeEEEccccC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-LE-LDIDFVQCDIRN  107 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~-~~v~~~~~d~~~  107 (115)
                      +++|-.|+ +|.++..++    +.+ .+|+.+|.++...+........ .+ .++.++.+|+.+
T Consensus         3 k~ilItG~-~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   64 (259)
T PRK12384          3 QVAVVIGG-GQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS   64 (259)
T ss_pred             CEEEEECC-CcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence            46777775 455444443    444 4899999887666554433322 22 257778888765

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=81.86  E-value=0.61  Score=33.12  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  105 (115)
                      .++.+|||.-|++|.-++..+. . +...|++.|.++..+...+.++..++.  .++..+.|+
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA  170 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDA  170 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchH
Confidence            3567999999999999988885 3 457999999999999999999888754  355555554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=81.74  E-value=9.7  Score=25.90  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeCCh
Q 033605           48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDIDS   81 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~s~   81 (115)
                      +..+||=+||| .|.. +..++..+..+++.+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            56789999998 4553 4445567777999999764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.59  E-value=11  Score=24.10  Aligned_cols=58  Identities=9%  Similarity=0.150  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCC-ChHHHHHH----hcCCCeEEEEeCCh---hHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGC-GTLGAAAT----LLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~-G~~~~~~~----~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|-.|+++ +.++..++    +.+ .+|+.++.+.   +.++...+...  +.++.++..|+.+.
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~   71 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSD   71 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCH
Confidence            567888888752 44444444    444 4788776442   22333222221  22566777777653

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=81.58  E-value=11  Score=23.91  Aligned_cols=55  Identities=24%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++++|=.| |+|.++..++    +.+ .+|+.++-++...........   .++.++.+|+.+
T Consensus         5 ~~~~vlItG-as~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~   63 (257)
T PRK07067          5 QGKVALLTG-AASGIGEAVAERYLAEG-ARVVIADIKPARARLAALEIG---PAAIAVSLDVTR   63 (257)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHhC---CceEEEEccCCC
Confidence            456777777 4455554444    343 489999988876655444332   246777777654

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=81.57  E-value=9.7  Score=23.26  Aligned_cols=59  Identities=15%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             CeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccCCc
Q 033605           50 KVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLE  109 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~~~  109 (115)
                      ..|+.||||--.....+.... ...++-+|..+ +++.-++.+...+.    +.+++.+|+.+..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~  143 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDS  143 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHH
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchh
Confidence            489999999999888887643 44666666654 33333333333311    4678888887643

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=81.53  E-value=3.9  Score=28.49  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=18.3

Q ss_pred             HHhcCCCeEEEEeCChhHHHHHHH
Q 033605           66 ATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        66 ~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +++.++ +|+++|+++.-++..+.
T Consensus        19 lA~~GH-eVv~vDid~~KV~~ln~   41 (414)
T COG1004          19 LAELGH-EVVCVDIDESKVELLNK   41 (414)
T ss_pred             HHHcCC-eEEEEeCCHHHHHHHhC
Confidence            445666 99999999998877665

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=81.33  E-value=8.2  Score=22.31  Aligned_cols=47  Identities=28%  Similarity=0.385  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEcCC-CChHH-HHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           45 GDVSNKVVADFGCG-CGTLG-AAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~-~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      ...++.++|=+|+| .|... ..++..+..+++.+.-+.+..+...+.+
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~   56 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF   56 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence            44578899999997 33333 3344567778999998877666655555

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=81.22  E-value=11  Score=23.52  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|+ +|.++..++    +.+. +|++++-++...+.........+.++.++.+|+.+
T Consensus         4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~   65 (246)
T PRK05653          4 QGKTALVTGA-SRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD   65 (246)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC
Confidence            3457886665 566665554    3344 78999888776655544444344467777777754

>PRK06180 short chain dehydrogenase; Provisional

Probab=80.91  E-value=12  Score=24.09  Aligned_cols=54  Identities=13%  Similarity=-0.026  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+++|=.|++. .++..++    +.+ .+|++++-++..+......   .+.++.++.+|+.+
T Consensus         4 ~~~vlVtGasg-giG~~la~~l~~~G-~~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~d   61 (277)
T PRK06180          4 MKTWLITGVSS-GFGRALAQAALAAG-HRVVGTVRSEAARADFEAL---HPDRALARLLDVTD   61 (277)
T ss_pred             CCEEEEecCCC-hHHHHHHHHHHhCc-CEEEEEeCCHHHHHHHHhh---cCCCeeEEEccCCC
Confidence            45677777644 4444433    344 4899999887765443332   12256667777654

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=80.68  E-value=9.8  Score=25.01  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|+  |.|..+..+++....++++++-+++..+.+++
T Consensus       140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~  186 (329)
T cd08294         140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE  186 (329)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            4457788888874  46667777776545589999988887777655

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=80.66  E-value=9.7  Score=24.17  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeC
Q 033605           48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDI   79 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~   79 (115)
                      ...+|+=+||| .|.. +..++..+..+++.+|.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            56799999998 5554 44455677789988863

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=80.65  E-value=14  Score=24.46  Aligned_cols=61  Identities=15%  Similarity=0.077  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~  109 (115)
                      .++++|-.| |+|.++..+++   ....+|+++..++.............+  .+++++.+|+.+..
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~   69 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG   69 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence            356788777 56666666553   123378777666554333222221112  26788888887643

>PRK08324 short chain dehydrogenase; Validated

Probab=80.52  E-value=13  Score=27.79  Aligned_cols=57  Identities=26%  Similarity=0.359  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .++++|=.|++ |.++..++    +.+ .+|+++|.++.....+....... .++.++.+|+.+
T Consensus       421 ~gk~vLVTGas-ggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd  481 (681)
T PRK08324        421 AGKVALVTGAA-GGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTD  481 (681)
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCC
Confidence            45788877753 33433333    344 48999999988776655543322 256777777654

>PLN02494 adenosylhomocysteinase

Probab=80.46  E-value=11  Score=27.07  Aligned_cols=51  Identities=25%  Similarity=0.160  Sum_probs=31.9

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHH
Q 033605           37 LYTAENSFGD-VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELA   87 (115)
Q Consensus        37 ~~~~~~~~~~-~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a   87 (115)
                      ++.+...... ..+++|+=+|+| .|......++....+|+++|.++.....+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA  293 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA  293 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH
Confidence            3444433332 468899999999 45544444443234899999998654443

>PRK07806 short chain dehydrogenase; Provisional

Probab=80.05  E-value=12  Score=23.49  Aligned_cols=59  Identities=14%  Similarity=0.075  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCCh-hHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|-.|++ |.++..++    +.+ .+|+++.-+. ...+.........+.++.++.+|+.+.
T Consensus         5 ~~k~vlItGas-ggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   68 (248)
T PRK07806          5 PGKTALVTGSS-RGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDE   68 (248)
T ss_pred             CCcEEEEECCC-CcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            55688888853 33444433    344 4788877653 233333333333333567777777653

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=80.02  E-value=10  Score=26.15  Aligned_cols=46  Identities=33%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||=.|+| .|..+..+++ .+...++++|.++..++.+++.
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~  229 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF  229 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc
Confidence            44567777767765 4445555665 4554577788988888887763

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
1wy7_A	207	Crystal Structure Of A Putative Rna Methyltransfera		2e-08
1ne2_A	200	Crystal Structure Of Thermoplasma Acidophilum 1320		5e-04

>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii Length = 207

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 4  KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXX 63
          K+L   L  L+ F NPKV LEQY T  + AS +L+ A  S GD+  KVVAD         
Sbjct: 6  KELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGVLS 64
Query: 64 XXXXXXXXDQVIAIDIDSDSLELASENAADLE 95
                   +VI +++D +++++  EN  + +
Sbjct: 65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFK 96

>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320 (Apc5513) Length = 200

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 6   LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXXXX 65
           LE  L  L+Q  N K  LEQYPT    A+  L    N  G++  + V D           
Sbjct: 10  LEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACG 68
Query: 66  XXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114
                 + V A DID D++E A  N       ++F   D+  +   GKY
Sbjct: 69  SYLLGAESVTAFDIDPDAIETAKRNCG----GVNFXVADVSEIS--GKY 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	6e-33
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	1e-12
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	5e-12
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	6e-12
2qm3_A	373	Predicted methyltransferase; putative methyltransf	2e-11
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	5e-11
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	8e-11
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	9e-11
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-10
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-10
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	3e-10
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-10
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-10
3ocj_A	305	Putative exported protein; structural genomics, PS	9e-10
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-09
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	5e-09
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	5e-09
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	6e-09
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-09
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	9e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-08
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	1e-08
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-08
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-08
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	2e-08
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-08
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-08
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	3e-08
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	4e-08
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-08
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	7e-08
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	7e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	7e-08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	9e-08
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	1e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-07
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-07
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	2e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	2e-07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	3e-07
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	3e-07
2b3t_A	276	Protein methyltransferase HEMK; translation termin	3e-07
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	5e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-07
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	6e-07
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	7e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	8e-07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	8e-07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	8e-07
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	9e-07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	9e-07
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-06
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-06
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-06
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-06
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-06
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	3e-06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-06
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	3e-06
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	3e-06
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	4e-06
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	4e-06
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	5e-06
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	6e-06
3cc8_A	230	Putative methyltransferase; structural genomics, j	6e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	7e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	8e-06
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	8e-06
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-05
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-05
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	1e-05
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-05
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-05
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	2e-05
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-05
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	2e-05
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	3e-05
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	3e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-05
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-05
2h00_A	254	Methyltransferase 10 domain containing protein; st	4e-05
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	4e-05
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	4e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-05
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-05
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	5e-05
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	6e-05
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	6e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	7e-05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	7e-05
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	7e-05
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	8e-05
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	9e-05
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-04
2frn_A	278	Hypothetical protein PH0793; structural genomics,	1e-04
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-04
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	1e-04
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	1e-04
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-04
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	1e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	3e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	3e-04
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	5e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-04
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	6e-04
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	6e-04
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	7e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	7e-04
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	8e-04
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	8e-04

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score =  119 bits (300), Expect = 1e-35
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
                LE  L  L+Q  N K  LEQYPT    A+  L    N  G++  + V D G G G
Sbjct: 5   GIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNG 63

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115
            L   + LLGA+ V A DID D++E A  N       ++F+  D+  +  +    
Sbjct: 64  ILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEISGKYDTW 114

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score =  113 bits (283), Expect = 6e-33
 Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 1/111 (0%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
            + K+L   L  L+ F NPKV LEQY T  + AS +L+ A  S GD+  KVVAD G G G
Sbjct: 3   TRKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTG 61

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
            L   A LLGA +VI +++D +++++  EN  + +        D+     R
Sbjct: 62  VLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR 112

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 23/47 (48%), Positives = 26/47 (55%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92
            V    VAD G G G L  AA  LGA  V+A DI  +S+  A ENAA
Sbjct: 58  MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAA 104

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
                 V D G G G L  AA  LG  + + +DID   L  A  NA    +   F++  +
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL 176

Query: 106 RNLEWRGKY 114
                 G +
Sbjct: 177 EAALPFGPF 185

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 59.2 bits (143), Expect = 6e-12
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 5   QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGA 64
           ++E++  DLE       + E Y +  +  + +     ++   +S   V D GCG G    
Sbjct: 77  RVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSL 136

Query: 65  AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114
             +LLG D V + D + +S+   +E      L+I     DI     +  Y
Sbjct: 137 YLSLLGYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373

 Score = 58.5 bits (141), Expect = 2e-11
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 3   LKQLESVLGDLEQFSN----PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGC 57
           L+    +L    +       P  E +Q Y T     +R++       GD+ NK +   G 
Sbjct: 124 LQAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTR--GDLENKDIFVLGD 181

Query: 58  GCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN---LEWRGK 113
              T  A        ++  +DID    +   + A ++   DI+    D+R         K
Sbjct: 182 DDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHK 241

Query: 114 Y 114
           +
Sbjct: 242 F 242

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
             +V    + D GCG G     A   GA  V+ +D+    L  A     D    I + + 
Sbjct: 39  LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERA 96

Query: 104 DIRNLE 109
           D+  L 
Sbjct: 97  DLDKLH 102

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 56.4 bits (136), Expect = 5e-11
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 42  NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV 101
                   + V D  CG G         G + V+ +D+  + L +A   A +  L I+F+
Sbjct: 35  KEDAKREVRRVLDLACGTGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNLKIEFL 93

Query: 102 QCDIRNLEWRGKY 114
           Q D+  + ++ ++
Sbjct: 94  QGDVLEIAFKNEF 106

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 56.1 bits (135), Expect = 8e-11
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
             D + K V D GCG G     A   GA +V+ ID+    L  A          + + Q 
Sbjct: 40  LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS--PVVCYEQK 97

Query: 104 DIRNLEWRGKY 114
            I ++      
Sbjct: 98  AIEDIAIEPDA 108

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 52  VADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           + D+GCG G LG     LL    +   ID     L  A E    L  D +F++ D   +E
Sbjct: 26  IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85

Query: 110 WRGKY 114
              KY
Sbjct: 86  LNDKY 90

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 55.4 bits (133), Expect = 2e-10
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 27  PTGPHIASRML---YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83
                 AS +L            V  + V D G G G L      +GA +V+ ++ D  S
Sbjct: 209 AGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLAS 267

Query: 84  LELASENAADLELDIDFVQCDIRN 107
           +    +      L    +  D+  
Sbjct: 268 VLSLQKGLEANALKAQALHSDVDE 291

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
           +      D  CG G L         +   A+D+  + L  A        L       DI 
Sbjct: 36  LVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS 94

Query: 107 NLEWRGKY 114
           NL    K+
Sbjct: 95  NLNINRKF 102

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 32  IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASEN 90
           + S++L    ++    +   V D GCG G L  A        ++   D+ + ++E +   
Sbjct: 183 VGSQLLL---STLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT 239

Query: 91  AADLELDIDFVQCDI 105
            A   ++ +    ++
Sbjct: 240 LAANGVEGEVFASNV 254

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 49  NKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
            K +AD GCG GT      LL AD  +V  +D+  + LE+A E A +    +DF   D+R
Sbjct: 34  GKRIADIGCGTGTA---TLLL-ADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR 89

Query: 107 NLEWRGKY 114
            LE     
Sbjct: 90  ELELPEPV 97

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 53.8 bits (129), Expect = 5e-10
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D  CG G         G + V+ +DI  D +  A E A   E +++F+  D R L 
Sbjct: 42  VLDLACGVGGFSFLLEDYGFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS 98

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 53.2 bits (127), Expect = 9e-10
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 51  VVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
           VVA   CG     L    +     Q++ ID D ++L+ A+  AA   L   I   + D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 107 NLEWRGKY 114
            L+ R  Y
Sbjct: 181 KLDTREGY 188

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 12  DLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGA--AATLL 69
           ++ +  +P   L  +   P     +L            +     G G   L     + + 
Sbjct: 87  EVIESDSPWETLRSFYFYPRY-LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY 145

Query: 70  GADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEWRG 112
           G  +V  ++I+ D  EL+ +    L +D ++ +  D   ++   
Sbjct: 146 GM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLE 188

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 25  QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDS 83
           Q P  P +  + L   +N        ++AD GCG G      A  +   QV  +D  S  
Sbjct: 26  QGPGSPEVTLKALSFIDNLT---EKSLIADIGCGTGGQTMVLAGHVTG-QVTGLDFLSGF 81

Query: 84  LELASENAADLELD--IDFVQCDIRNL 108
           +++ + NA    L   +  +   + +L
Sbjct: 82  IDIFNRNARQSGLQNRVTGIVGSMDDL 108

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           +K V D G G      +  +    +   I+I    L+ A   + +    ++  + DIR L
Sbjct: 24  DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL 83

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEW 110
             D GCG G         G D V A D ++ S+       +   LD +     D+ NL +
Sbjct: 36  TLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94

Query: 111 RGKY 114
             +Y
Sbjct: 95  DRQY 98

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 32  IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
             +++L   EN      +  + D GCG G +G A            DI+  +++LA EN 
Sbjct: 39  KGTKIL--VEN-VVVDKDDDILDLGCGYGVIGIAL-ADEVKSTTMADINRRAIKLAKENI 94

Query: 92  ADLELD---IDFVQCDI 105
               LD   I  V  D+
Sbjct: 95  KLNNLDNYDIRVVHSDL 111

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 50.7 bits (121), Expect = 6e-09
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 52  VADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108
           V + GCG G      A      ++ +IDI  +SLE A EN     + ++ F+Q +I +L
Sbjct: 41  VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
                 + V D GCG G L  A    G +  + +D D   ++ A    A       + Q 
Sbjct: 48  ILGRQPERVLDLGCGEGWLLRALADRGIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQL 106

Query: 104 DIRNL 108
               +
Sbjct: 107 AEAKV 111

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 50.2 bits (120), Expect = 9e-09
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103
            ++     D G G G L  A        + A+D      E+A +N AD  L+  I  VQ 
Sbjct: 41  GITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG 100

Query: 104 DIRNL 108
           D+ N+
Sbjct: 101 DVHNI 105

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 51  VVADFGCGCGTL-GAAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN 107
            V D G G G      + ++G   +V AID+  + +  A E    L L  ++ ++ +   
Sbjct: 40  TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99

Query: 108 L 108
           +
Sbjct: 100 I 100

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 31  HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN 90
           HIA R+              VV D  CG G       L G  +VIAIDID   + LA  N
Sbjct: 68  HIAGRVS-------QSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNN 119

Query: 91  AADLELD--IDFVQCDIRNLEWRGKY 114
           A    +   I+F+  D   L    K 
Sbjct: 120 AEVYGIADKIEFICGDFLLLASFLKA 145

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCDIRNL 108
           + D   G G +    +     +++ ++I     ++A  + A   LE  I+ ++ D++ +
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           + D GCG G +G   +  G D V+  D+D   ++ A ++  +      +V  D+   + 
Sbjct: 50  ILDAGCGQGRIGGYLSKQGHD-VLGTDLDPILIDYAKQDFPEAR----WVVGDLSVDQI 103

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 49 NKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELD 97
           + V D GC  G L  + A   G  +++ +DIDS  +  A +N      +
Sbjct: 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSE 96

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 48.8 bits (116), Expect = 3e-08
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 51  VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           V  + G G G +       G  + IA+D D+  LE+  +  A ++  +  VQ D R +
Sbjct: 42  VFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI 98

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELAS 88
           P        +   +  D  N  + D G G G L A             +D+    LE+A 
Sbjct: 26  PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK 85

Query: 89  ENAADLELDIDFVQCDIRNLEWRGKY 114
                  L + +++ D    ++  KY
Sbjct: 86  NRFRG-NLKVKYIEADYSKYDFEEKY 110

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
                + + D GCG G L       GA +V+  D  +  +E A +N       + F   D
Sbjct: 54  NPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNYP----HLHFDVAD 108

Query: 105 IRNLEWRGKY 114
            RN       
Sbjct: 109 ARNFRVDKPL 118

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           +   GCG   L     L G   V ++D  S  +       A +   + +   D+R L++
Sbjct: 46  ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP-QLRWETMDVRKLDF 103

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 48  SNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
           S   V D G G G +  + A       V A+D+  D+L +A  NA      +D+   D 
Sbjct: 30  SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG 88

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI----DFVQCDIRN 107
           V +   G G L      LG + V A+++ +  L    +  A+   D+      VQ D+  
Sbjct: 86  VLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144

Query: 108 LEWRGKY 114
                ++
Sbjct: 145 FALDKRF 151

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
              + D  CG GT     T    D    +++  D L  A +   D        Q D+R+ 
Sbjct: 41  ASSLLDVACGTGTHLEHFTKEFGD-TAGLELSEDMLTHARKRLPDAT----LHQGDMRDF 95

Query: 109 EWRGKY 114
               K+
Sbjct: 96  RLGRKF 101

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSL 84
              P +A  +L  A+   G      V D   G GT+   A         V A D+D   L
Sbjct: 186 SLTPVLAQALLRLADARPGMR----VLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL 241

Query: 85  ELASENAADLELD-IDFVQCDIRNLE 109
            LA E A    L  I F++ D R+L 
Sbjct: 242 GLAREAALASGLSWIRFLRADARHLP 267

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 48.1 bits (114), Expect = 7e-08
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V D  CG G         G   V ++D     L+ A +   +   +  F +  I    W 
Sbjct: 61  VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 119

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 47.2 bits (112), Expect = 9e-08
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 49  NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD--IDFVQCD 104
              + D G     L      +G  D  IA ++ +   + A +N ++  L   ID    +
Sbjct: 22  GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 49  NKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDI 105
           +  +AD GCG G      A  +   Q+  ID+  D +E+ +ENA        +  +   +
Sbjct: 47  DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105

Query: 106 RNL 108
            NL
Sbjct: 106 DNL 108

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDF 100
           N V  D GCG G +          +V AID + +++     N     L  + 
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNV 84

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 48  SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD--IDFVQCD 104
            N+ +AD G     L   A     A   IA ++     + A +      L   ID  + +
Sbjct: 21  KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN 80

Query: 105 IRNLEWRGKYI 115
              +  +   I
Sbjct: 81  GLAVIEKKDAI 91

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 21  VELEQYPTGPH-IASRMLYTAENSFGDVSNKVVADFGCGCGTL-GAAATLLGADQVIAID 78
           +E E     P  +  + +     +    + + V D GCG G L          +Q+  +D
Sbjct: 1   MEEEAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVD 60

Query: 79  IDSDSLELASENAADLELD------IDFVQCDI 105
           +   SLE+A E    L L       +  +Q  +
Sbjct: 61  VSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL 93

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V +FG G G L     L G   V  I+   +   +A E       +    + D  + E  
Sbjct: 49  VLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPK---EFSITEGDFLSFEVP 104

Query: 112 GKY 114
              
Sbjct: 105 TSI 107

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLE 85
                IA+ M+  AE     +    V D  CG GT+     L     ++I I+     L 
Sbjct: 201 HLKASIANAMIELAE-----LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLI 255

Query: 86  LASENA--ADLELDIDFVQCDIRNLE 109
            A  NA  A +   I F+Q D   L 
Sbjct: 256 GAEMNALAAGVLDKIKFIQGDATQLS 281

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
                + + G   G   +       D +  ++   +++  A      L+  I ++     
Sbjct: 41  FRPGNLLELGSFKGDFTSRLQEHFND-ITCVEASEEAISHAQGR---LKDGITYIHSRFE 96

Query: 107 NLEWRGKY 114
           + +   +Y
Sbjct: 97  DAQLPRRY 104

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 52  VADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAA-----DLELDIDFVQCDI 105
           +AD G G G  G A A  L   +V   +   +  E A  +            I+ ++ D+
Sbjct: 40  IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99

Query: 106 RN 107
             
Sbjct: 100 TL 101

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           + D  CG G             V  +++ +D L +A     D          D+R+    
Sbjct: 54  LLDVACGTGMHLRHLADSFGT-VEGLELSADMLAIARRRNPDAV----LHHGDMRDFSLG 108

Query: 112 GKY 114
            ++
Sbjct: 109 RRF 111

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 52  VADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCD 104
           + D G G G +  A A+     ++IA+D   D++ LA  NA  L +  I  +Q D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD 167

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           + DF CG GT     +     +VI +D+   +LE+A++       +I +   D    E 
Sbjct: 60  LIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQ 115

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 52  VADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
             D GCG G          G + +  ID D D LE A++   +      F + D+   + 
Sbjct: 37  GYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN----FGKADLATWKP 92

Query: 111 RGKY 114
             K 
Sbjct: 93  AQKA 96

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 49  NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD--IDFVQCD 104
             ++ D G     L       G     IA ++     + A +N     L   I     +
Sbjct: 16  GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLAN 74

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           + D G G G        LG   +  ++  +  +ELA +        + F    I +L
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQ-IEGLEPATRLVELARQTHP----SVTFHHGTITDL 96

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELD----IDFVQCDI 105
           + D GCG G +G          +V+ +D    ++  +  N      +     +F+  + 
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFV 101
                 K VAD G G G +G +        V A D+ S ++E+A +NA    +       
Sbjct: 119 IRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 178

Query: 102 QCDI 105
           + + 
Sbjct: 179 KGEF 182

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 44.5 bits (105), Expect = 8e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           +     G G        LG  +V A+D  S  L  A + A +  + I  VQ ++ + + 
Sbjct: 33  ILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI 90

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQ 102
           + VV D GCG G +           V AID    ++E+  +N A   +     ++
Sbjct: 36  DDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCD 104
              V D     G     A + GAD+VI ID    ++E A ENA    +E  + F+   
Sbjct: 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS 275

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 21/114 (18%)

Query: 10  LGDLEQFSNPKVELEQY-PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG-TLGAAAT 67
           L + E FS      E Y  T   + ++M+   + +  D+      D G G G  +   A 
Sbjct: 143 LNNYEPFSP-----EVYGETSFDLVAQMIDEIKMTDDDL----FVDLGSGVGQVVLQVAA 193

Query: 68  LLGADQVIAIDIDSDSLELASENAADLE----------LDIDFVQCDIRNLEWR 111
                    ++      + A     +             +    + D  + EWR
Sbjct: 194 ATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 247

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.6 bits (105), Expect = 9e-07
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 21  VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDI 79
           ++ E+     ++  + L T       V+ K V D GCG G L +        +Q+  +D+
Sbjct: 2   LKNEETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDV 61

Query: 80  DSDSLELASENAADLELD------IDFVQCDIRNLEWRGK 113
               LE A +      L       I   Q  +   + R  
Sbjct: 62  SYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFS 101

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 14/104 (13%)

Query: 6   LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA 65
           +  VLG ++   +  +E           SR       S          D G G G +   
Sbjct: 64  VSGVLGGMDHVHDVDIE----------GSRNFI---ASLPGHGTSRALDCGAGIGRITKN 110

Query: 66  ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
                      ++     LE A    A + +   F+   +    
Sbjct: 111 LLTKLYATTDLLEPVKHMLEEAKRELAGMPV-GKFILASMETAT 153

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCD 104
             +V  + G G   +    A      +V A ++D +  E A  N      +  +      
Sbjct: 55  GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114

Query: 105 IRNLEWRGKY 114
           I      G +
Sbjct: 115 IIKGVVEGTF 124

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V +   G G      + L    V A+D  ++ +  A  +  D   +++F Q D+ +    
Sbjct: 50  VLELASGTGYWTRHLSGLADR-VTALDGSAEMIAEAGRHGLD---NVEFRQQDLFDWTPD 105

Query: 112 GKY 114
            ++
Sbjct: 106 RQW 108

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 49  NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIR 106
             +V D   G G     A L G + +V A D+   +L   S+  +DL ++  + +     
Sbjct: 23  ESIVVDATMGNG--NDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80

Query: 107 NLE 109
           NL+
Sbjct: 81  NLD 83

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 45  GDVSNKVVADFGCGC-GTL-GAAATLLGADQVIAIDIDSDSLELASENAAD 93
           G      V   G G  G +    A  +GA QV+  D+ +  L  A E  AD
Sbjct: 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNL 108
           V D G G G    A +     + I +D   + +E+AS  A +  ++ + F Q    +L
Sbjct: 25  VLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 81

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           V D GCG G      +  G  + + +DI    ++   E       D+ F++ D+ +L
Sbjct: 57  VLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG--PDLSFIKGDLSSL 110

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 37  LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--L 94
           +Y   + F D   KVV D GCG G L   A   GA +V+ +D  S+ L  A +      L
Sbjct: 56  IYQNPHIFKD---KVVLDVGCGTGILSMFAAKAGAKKVLGVD-QSEILYQAMDIIRLNKL 111

Query: 95  ELDIDFVQCDIRNLE 109
           E  I  ++  I  + 
Sbjct: 112 EDTITLIKGKIEEVH 126

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           +  +    V+ D+GCG G            ++  IDI+  +L+   E    +    D
Sbjct: 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSD 67

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 14/71 (19%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCG----CGTLGAAATLLGADQVIAIDIDSD 82
            TG H A      A    GD     V   G G        GA    LGA ++ A+     
Sbjct: 153 TTGFHGAEL----ANIKLGDT----VCVIGIGPVGLMSVAGAN--HLGAGRIFAVGSRKH 202

Query: 83  SLELASENAAD 93
             ++A E  A 
Sbjct: 203 CCDIALEYGAT 213

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 52  VADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIRNL 108
           + D G G G +    A   G      ID+ S     A   A +L +   + F+  D    
Sbjct: 40  ILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98

Query: 109 EWRGKY 114
               K 
Sbjct: 99  VANEKC 104

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD---IDFVQC 103
           V NK V +     G    +A + G  QV+++D   ++L++A +N    +LD    +FV+ 
Sbjct: 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD 278

Query: 104 D----IRNLEWRGK 113
           D    +R    RG+
Sbjct: 279 DVFKLLRTYRDRGE 292

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCDIR 106
           N VV D   G G    A     A ++ AIDI+  ++EL  +N     LE  I  +  D+R
Sbjct: 196 NDVVVDMFAGVGPFSIAC--KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVR 253

Query: 107 NLE 109
            ++
Sbjct: 254 EVD 256

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
            G GT+G      A  LGA  V AIDI S+ L LA    A 
Sbjct: 167 IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM 207

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQ 102
           D  +K+V D GCG G L   A   GA ++ A++  +    +  L   N  +L   I  + 
Sbjct: 48  DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN--NLTDRIVVIP 105

Query: 103 CDIRNLEWRGK 113
             +  +    +
Sbjct: 106 GKVEEVSLPEQ 116

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD 97
           K V D GC  G LGAA    G   V  I+   ++ E A E    + L 
Sbjct: 33 WKEVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAEQAKEKLDHVVLG 80

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 48  SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIR 106
                 D G G G +     L    +V  +DI  D L  A     +      ++  C ++
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138

Query: 107 NLE 109
           +  
Sbjct: 139 DFT 141

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.9 bits (98), Expect = 8e-06
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
           V + GCG G   A      A +  A D   + L+LA  NA   +      + + +
Sbjct: 52  VLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHAD----VYEWNGK 101

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 42.0 bits (98), Expect = 8e-06
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQ 102
           D  +K+V D GCG G L   A   GA ++ A++  +    +  L   N  +L   I  + 
Sbjct: 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN--NLTDRIVVIP 213

Query: 103 CDIRNLEWRGK 113
             +  +    +
Sbjct: 214 GKVEEVSLPEQ 224

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDI 98
           CG G +G      A   GA  ++  DID   L+ A E   ++    
Sbjct: 186 CGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHK 231

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 52  VADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE 89
              +G G   L A  AA + GA  +IA+DI    LELA +
Sbjct: 194 FVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 233

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI-DSDSLELASENAA------DLELDI 98
            ++ K V + G G G +   A L GADQV+A D  D + L     N             +
Sbjct: 77  LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV 136

Query: 99  DFVQCDIRNLEW 110
                 +    W
Sbjct: 137 KRASPKVVPYRW 148

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 39  TAENSFGDVSNKVVADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAAD 93
             +      + K V   G G   L     A  LGA+ VI I    + L+LA E  AD
Sbjct: 186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 45  GDVSNKVVADFGCGC-GTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELDI 98
           G +S K V   G G  G LG   A   GA  VI  +      ELA +  AD  ++ 
Sbjct: 164 GPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP 219

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 51  VVADFGCG-CGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            V   G G  G   A +A LLGA  VI  D++   L  A     +     D     
Sbjct: 188 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE---IADLSLDT 240

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 51  VVADFGCG-CGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            V   G G  G   A  A LLGA  VI  D + + L+L S+   +    ID     
Sbjct: 188 HVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE---TIDLRNSA 240

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 17/92 (18%)

Query: 19  PKVELEQY---PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVI 75
            ++ LEQ     T  + +  +               V D   G G    A     + Q I
Sbjct: 71  SRLSLEQSSGAVTSSYKSRFI----------REGTKVVDLTGGLGIDFIALMSKAS-QGI 119

Query: 76  AIDIDSDSLELASENAADLELD---IDFVQCD 104
            I+ + ++   A  N   L  +   ++ +  D
Sbjct: 120 YIERNDETAVAARHNIPLLLNEGKDVNILTGD 151

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 52  VADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D G G G          GA     IDI S+ + +A+E  +     I F   DI   E
Sbjct: 59  VLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVS-GNNKIIFEANDILTKE 115

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN 107
           N+ V D   G G +  A       +V+A D+  D L++A           +++VQ D   
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96

Query: 108 L 108
           +
Sbjct: 97  M 97

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQC 103
              +K+V D GCG G L   A   GA  VI +D  S  +E+A E          I  ++ 
Sbjct: 36  LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVD-MSSIIEMAKELVELNGFSDKITLLRG 94

Query: 104 DIRNLE 109
            + ++ 
Sbjct: 95  KLEDVH 100

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD------IDFVQ 102
           +  + D GCG G +       G   V  IDI+S+++ LA   A    L+       +F  
Sbjct: 31  DDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKV 89

Query: 103 CDIRNL 108
            +  +L
Sbjct: 90  ENASSL 95

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            + V D     G     A   GA   +A+D D ++L +  + A  L L +D    +
Sbjct: 215 GERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGE 269

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
             + GC  G            ++  ID+   ++  A +        I +   DI      
Sbjct: 55  GLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFSTA 112

Query: 112 GKY 114
             +
Sbjct: 113 ELF 115

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           G G LG         + A +VIA+D+D D L LA E  AD  +   
Sbjct: 179 GVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG 224

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 16/116 (13%)

Query: 3   LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYT-------AENSFGDVSNKVVADF 55
           ++ L   L  L +     +++      P +  R+ Y                + +   D 
Sbjct: 15  VRALTCTL--LREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDI 72

Query: 56  GCGCGTLGAAATLLGAD----QVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107
           G G   +     LLGA       +A ++D      A +N     L        +  
Sbjct: 73  GTGASCI---YPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ 125

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG G     A       GA ++I +    D    A E       N  D +  I
Sbjct: 195 CAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPI 250

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG GC  L A     + GA ++IAIDI+ +    A         N  +L+  +
Sbjct: 199 CAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPV 254

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 6/63 (9%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           + + GCG G    A    G D V A D   +    AS                   L+  
Sbjct: 47  ILELGCGAGYQAEAMLAAGFD-VDATDGSPELAAEASRRLG-----RPVRTMLFHQLDAI 100

Query: 112 GKY 114
             Y
Sbjct: 101 DAY 103

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 8/63 (12%)

Query: 52  VADFGCGCGTLGAA---ATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
             D G G G  GAA       G   +  ++I     +   E      L   I        
Sbjct: 86  GLDLGAGYG--GAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142

Query: 107 NLE 109
            + 
Sbjct: 143 EIP 145

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELD 97
           G G +G    A     GA +VI  +       LA E  AD  +D
Sbjct: 221 GGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVID 264

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86
                I + ++    N        V+AD G G G    A    G   V A++      + 
Sbjct: 17  VPDIRIVNAII----NLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQ 71

Query: 87  ASENAADLELDIDFVQCDIRNL 108
           A  +       +++      NL
Sbjct: 72  AVVHP-----QVEWFTGYAENL 88

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDF 100
            +++ D G G G++     L G  + I I+  +D +E   +N     L    
Sbjct: 56  GELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRM 106

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG G   L       + GA ++I +DI+ D    A E       N  D    I
Sbjct: 194 CAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPI 249

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 43  SFGDVSNKVVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---D 97
            + D   K++ D GCG G  TL  A  L   +Q+I  D+ +  ++ A            +
Sbjct: 31  EYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90

Query: 98  IDFVQCDIRNLEWRG 112
           + F      + ++ G
Sbjct: 91  VSFKISSSDDFKFLG 105

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D G G G         G + V+ +D   + LE+A E         + V+    +L 
Sbjct: 58  VLDLGGGTGKWSLFLQERGFE-VVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLP 109

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score = 39.3 bits (91), Expect = 7e-05
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103
              +KVV D G G G L   A   GA +VI I+  S   + A +     +LD  +  ++ 
Sbjct: 64  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE-CSSISDYAVKIVKANKLDHVVTIIKG 122

Query: 104 DIRNLE 109
            +  +E
Sbjct: 123 KVEEVE 128

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQC 103
               K V D G G G L   +   GA +V A++    + + A        L+  ++ ++ 
Sbjct: 61  HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMA-DHARALVKANNLDHIVEVIEG 119

Query: 104 DIRNLEWRGK 113
            + ++    K
Sbjct: 120 SVEDISLPEK 129

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 4/41 (9%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
            G G +G          GA  ++  D +   L  A   A  
Sbjct: 171 TGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADR 211

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 45  GDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
           G      V   G G  G +   A       V+        LE+A    AD+ L +D  + 
Sbjct: 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKE 224

Query: 104 DIRNL 108
           +  ++
Sbjct: 225 EESSI 229

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
           +++V D   G G L     + G  +VIAI+ D  + +   EN    +++  +     D R
Sbjct: 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 185

Query: 107 NLEWRGKY 114
           +       
Sbjct: 186 DFPGENIA 193

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
            G G +G      A L GA  VI     +    LA E  A 
Sbjct: 189 LGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT 229

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
           ++ + D G G G++             +  +I  +  E    NA +L + D   VQ   
Sbjct: 26  HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA 84

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           G G LG        ++    VIA+D+  + L+LA    AD  +D  
Sbjct: 194 GVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 239

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 58  GCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           G GT G     L   Q + ++     L +    A     +  +V+     L
Sbjct: 44  GAGT-GYWLRRLPYPQKVGVEPSEAMLAVGRRRAP----EATWVRAWGEAL 89

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           + DFGCG   L              A DID   +   S     L+  I +   +  +  +
Sbjct: 53  ILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVY 112

Query: 111 RGKY 114
           +G Y
Sbjct: 113 KGTY 116

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG G   L         GA ++I +DI+ D    A E       N  D +  I
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPI 250

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 51  VVADFGCGCGTL-GAAATLLGAD-QVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
            V D  CG G      A+L+G + +V   DI   ++   ++   DL L   +  ++   +
Sbjct: 25  TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84

Query: 107 NLEW 110
           N++ 
Sbjct: 85  NMDK 88

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
              V D GCG G         G  +   +DI   S+  A   A +++    + F   D  
Sbjct: 65  GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 124

Query: 107 N 107
            
Sbjct: 125 G 125

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG G   L A       GA ++IA+D++ D  E A         N  D    I
Sbjct: 196 CAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPI 251

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQ 102
                 +   D     G       L G  +V+A+D  +++L  A ENA    L  +  ++
Sbjct: 205 MERFRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE 263

Query: 103 CD 104
            +
Sbjct: 264 AN 265

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 46  DVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
           D     V D GCG G    A A  L       +D+   +++ A++        + F    
Sbjct: 83  DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVAS 138

Query: 105 IRNL 108
              L
Sbjct: 139 SHRL 142

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 6   LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA 65
           L   +  L      +  +E     P ++ + +  A     + S   + DFGCG G+L  +
Sbjct: 679 LNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDS 738

Query: 66  ATLLGAD--QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
                     +I +DI    L  A++    L + ++   C++++   
Sbjct: 739 LLDYPTSLQTIIGVDISPKGLARAAKM---LHVKLNKEACNVKSATL 782

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 60  GTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELD-IDFVQCD 104
                AA + GA    ++D+   S  L+  +     L++     V  D
Sbjct: 224 AAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD 271

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 49  NKVVADFGCGCGTLGA-AATLLGAD-QVIAIDIDSDSLELASENAADLELD--------- 97
              V D GCG G     A+ L+G   +VI +D+  + LE+A +                 
Sbjct: 84  GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143

Query: 98  IDFVQCDIRNL 108
           + F++  I NL
Sbjct: 144 VRFLKGFIENL 154

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRGKY 114
            +   D D   +E+A +NA    LE  +   Q  +++ +     
Sbjct: 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKIN 301

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 18/122 (14%)

Query: 3   LKQLESVLGDLEQFSNPKVE-LEQYPTGPHIAS---RMLYTAE---NSF---GDVSN-KV 51
           L+ L+ +L  ++     + +         H      R L  ++   N      +V N K 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 52  VADFGCGCGTL-----GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
              F   C  L           L A     I +D  S+ L  +      L + ++ C  +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQ 316

Query: 107 NL 108
           +L
Sbjct: 317 DL 318

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRGKY 114
           ++   DID +S+++A ENA  A ++  I+F   D    +   ++
Sbjct: 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEF 302

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRGKY 114
            +I  DID+  +E+A +NA  A L   I F Q  + + +   +Y
Sbjct: 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEY 308

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
           F   + + V D  CG   L  A    G   V   DI     ++ +  A + + D  F   
Sbjct: 101 FSAETPRRVLDIACGLNPL--ALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQ 158

Query: 104 DI 105
           D+
Sbjct: 159 DV 160

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 9/51 (17%)

Query: 58  GCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           G GT G  A  L     I ++      E+A +        +  ++    NL
Sbjct: 55  GVGT-GRFAVPLK--IKIGVEPSERMAEIARKRG------VFVLKGTAENL 96

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 58  GCGTLG------AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           G G L         A +     ++ I       + A E  AD   ++   +  I  L
Sbjct: 178 GIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMKDAESLINKL 233

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 14/92 (15%)

Query: 25  QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAA--TLLGADQVIAIDIDSD 82
           +  T P +   M+    +         V +  C  G    A       A + + ++ID  
Sbjct: 20  RVETPPEVVDFMV----SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK 75

Query: 83  SLELASENAADLELDIDFVQCDIRNLEWRGKY 114
           +L+L            + +  D    E    +
Sbjct: 76  ALDLPPWA--------EGILADFLLWEPGEAF 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.8
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.74
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.71
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.66
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.65
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.65
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.64
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.62
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.62
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.62
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.62
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.61
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.61
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.61
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.61
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.61
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.61
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.6
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.59
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.59
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.59
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.59
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.59
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.59
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.59
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.59
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.59
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.58
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.58
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.58
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.58
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.58
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.58
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.58
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.57
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.57
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.57
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.57
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.57
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.57
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.57
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.56
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.56
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.56
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.56
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.56
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.56
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.55
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.55
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.55
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.55
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.55
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.55
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.55
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.55
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.55
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.54
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.54
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.54
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.54
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.54
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.54
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.54
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.53
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.53
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.53
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.53
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.53
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.52
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.52
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.52
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.52
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.52
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.52
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.52
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.52
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.52
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.52
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.52
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.51
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.51
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.51
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.5
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.5
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.5
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.49
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.49
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.49
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.49
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.49
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.49
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.49
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.49
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.49
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.48
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.48
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.48
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.48
3ocj_A	305	Putative exported protein; structural genomics, PS	99.48
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.47
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.47
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.47
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.47
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.47
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.46
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.46
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.46
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.46
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.46
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.46
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.46
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.45
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.45
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.45
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.45
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.45
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.44
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.44
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.44
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.43
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.43
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.43
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.43
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.43
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.42
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.42
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.42
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.42
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.42
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.41
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.41
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.41
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.41
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.41
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.41
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.41
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.4
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.4
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.4
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.38
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.38
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.38
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.38
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.37
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.37
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.37
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.37
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.37
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.37
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.37
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.37
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.37
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.37
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.36
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.36
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.36
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.36
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.36
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.35
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.35
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.35
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.35
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.35
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.34
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.34
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.33
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.33
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.32
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.32
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.32
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.32
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.31
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.31
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.31
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.31
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.31
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.3
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.3
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.3
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.3
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.3
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.3
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.29
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.29
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.29
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.29
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.29
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.28
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.28
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.28
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.28
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.27
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.27
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.27
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.27
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.26
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.25
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.24
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.24
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.24
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.24
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.24
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.23
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.23
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.22
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.22
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.21
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.2
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.19
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.19
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.19
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.19
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.19
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.18
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.18
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.17
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.17
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.17
2o07_A	304	Spermidine synthase; structural genomics, structur	99.17
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.17
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.16
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.16
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.14
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.14
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.1
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.1
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.09
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.08
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.07
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.07
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.06
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.05
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	99.05
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.04
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.04
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	99.02
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.02
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.02
3lkd_A	542	Type I restriction-modification system methyltrans	99.02
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.99
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.97
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.96
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.95
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.95
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.92
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.91
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.88
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.88
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.88
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.8
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.79
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.72
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.72
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.71
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.68
3khk_A	544	Type I restriction-modification system methylation	98.66
3ufb_A	530	Type I restriction-modification system methyltran	98.63
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.56
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	98.46
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.28
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.27
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.19
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.19
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	98.19
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.14
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.13
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.11
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.11
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.06
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.0
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.99
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.95
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.91
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.9
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.86
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.8
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.66
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.6
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.59
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.57
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.48
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.37
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.13
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	96.7
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.66
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.64
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	96.44
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.02
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.01
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.99
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.84
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.83
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.76
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.74
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.62
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.59
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.52
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.52
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.51
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.49
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	95.44
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.43
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.42
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.41
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.41
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.39
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.35
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.3
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.29
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	95.25
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.25
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	95.24
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.22
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	95.12
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.0
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	94.97
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	94.97
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.92
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.91
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	94.9
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	94.89
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.87
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.86
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.84
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.8
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.79
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.76
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.74
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.71
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.7
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.65
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.64
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.64
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.61
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.61
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.6
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.58
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.58
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.54
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.5
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	94.5
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.49
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.48
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.44
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.42
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	94.39
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.36
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.35
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.35
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.34
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.34
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.31
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	94.23
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.22
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.21
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.2
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.14
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	94.13
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.13
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.12
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.12
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	94.11
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.08
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.04
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.01
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.95
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.93
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.93
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.92
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.89
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.87
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.78
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.75
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.74
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.72
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.62
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.62
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.61
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	93.61
1xkq_A	280	Short-chain reductase family member (5D234); parra	93.59
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	93.58
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.57
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	93.57
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.57
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.56
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.55
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.5
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.49
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	93.49
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.48
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.44
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.39
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.39
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	93.37
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.35
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.32
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	93.32
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.29
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.29
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.28
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.2
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	93.19
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.18
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.14
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.13
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.13
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	93.11
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.08
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.03
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.03
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.96
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.94
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.93
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	92.93
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	92.89
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.8
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.8
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.71
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.71
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.71
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	92.64
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.64
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.59
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	92.59
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.55
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.55
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.53
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.48
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.47
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.47
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.42
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	92.42
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.41
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.4
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.4
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	92.38
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.37
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	92.33
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	92.24
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	92.23
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.23
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.2
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.2
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.18
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.17
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	92.14
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	92.14
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.11
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	92.1
1spx_A	278	Short-chain reductase family member (5L265); paral	92.07
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	92.05
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	92.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.96
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	91.89
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.88
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.88
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	91.83
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.8
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	91.74
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	91.74
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.69
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.64
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.62
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	91.61
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	91.61
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.58
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.56
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	91.55
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.54
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.53
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	91.48

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.80  E-value=3e-18  Score=104.90  Aligned_cols=108  Identities=37%  Similarity=0.589  Sum_probs=90.5

Q ss_pred             CccchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCC
Q 033605            1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID   80 (115)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s   80 (115)
                      |+++.++.+.+....|..+...+.++.++......++..+... ...++.+|||+|||+|.++..+++.+..+++|+|++
T Consensus         3 m~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~   81 (207)
T 1wy7_A            3 TRKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVD   81 (207)
T ss_dssp             -CCHHHHHHHHTSCCCSSCCGGGTCCCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC
T ss_pred             ccHHHHHHHHhhCcCCCCcccceeeecCchHHHHHHHHHHHHc-CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECC
Confidence            5677788888888888887778888888888888777665543 445678999999999999999998766689999999


Q ss_pred             hhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           81 SDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        81 ~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.+++.++++....+.+++++++|+.+++
T Consensus        82 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  110 (207)
T 1wy7_A           82 KEAVDVLIENLGEFKGKFKVFIGDVSEFN  110 (207)
T ss_dssp             HHHHHHHHHHTGGGTTSEEEEESCGGGCC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECchHHcC
Confidence            99999999999887778999999998865

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.74  E-value=3.2e-17  Score=99.88  Aligned_cols=102  Identities=37%  Similarity=0.558  Sum_probs=79.0

Q ss_pred             cchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh
Q 033605            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD   82 (115)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~   82 (115)
                      ++.++...+.+..|......+.++.++......++..+... ...++.+|||+|||+|.++..+++.+..+|+|+|+++.
T Consensus         7 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~   85 (200)
T 1ne2_A            7 KNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD   85 (200)
T ss_dssp             HHHHHHHHHTSCCCC--------CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH
T ss_pred             HHHHHHHHHhcCCCCccccceeecCCCHHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHH
Confidence            45677788888888888888889999998888888666544 44577899999999999999999776668999999999


Q ss_pred             HHHHHHHHhhccCCceeEEEccccCCc
Q 033605           83 SLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        83 ~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++.++++..    +++++++|+.+++
T Consensus        86 ~~~~a~~~~~----~~~~~~~d~~~~~  108 (200)
T 1ne2_A           86 AIETAKRNCG----GVNFMVADVSEIS  108 (200)
T ss_dssp             HHHHHHHHCT----TSEEEECCGGGCC
T ss_pred             HHHHHHHhcC----CCEEEECcHHHCC
Confidence            9999999876    6899999998865

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.71  E-value=2.4e-16  Score=99.89  Aligned_cols=66  Identities=21%  Similarity=0.340  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|..+..+++.   +..+|+|+|+|+.|++.|++++...+.  +++++++|+.++|+++
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~  139 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN  139 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccc
Confidence            47789999999999999999864   245899999999999999999887765  8999999999998864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.66  E-value=2.6e-16  Score=96.33  Aligned_cols=69  Identities=17%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-------------cCCceeEEEccccCC
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNL  108 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~v~~~~~d~~~~  108 (115)
                      ..+...++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++...             ...+++++++|+.++
T Consensus        16 ~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             HhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            333455778999999999999999998765 999999999999999988653             123899999999999


Q ss_pred             ccc
Q 033605          109 EWR  111 (115)
Q Consensus       109 ~~~  111 (115)
                      +++
T Consensus        95 ~~~   97 (203)
T 1pjz_A           95 TAR   97 (203)
T ss_dssp             THH
T ss_pred             Ccc
Confidence            875

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.66  E-value=1.6e-15  Score=95.28  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .....+..++......++.+|||+|||+|..+..+++....+|+|+|+|+.+++.++++....+.  +++++++|+++++
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence            34455666666666678889999999999999999975455999999999999999999887765  7999999999987


Q ss_pred             ccCC
Q 033605          110 WRGK  113 (115)
Q Consensus       110 ~~~~  113 (115)
                      +.+.
T Consensus       100 ~~~~  103 (256)
T 1nkv_A          100 ANEK  103 (256)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            7433

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.65  E-value=1e-15  Score=96.65  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...+++.+++.....++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++.... .+++++++|+.++++++
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~-~~v~~i~~D~~~~~~~~   91 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQ-KNITIYQNDALQFDFSS   91 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTC-TTEEEEESCTTTCCGGG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhC-CCcEEEEcchHhCCHHH
Confidence            34455555666666688899999999999999999875 59999999999999999988752 38999999999998764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.65  E-value=7.5e-16  Score=93.12  Aligned_cols=81  Identities=21%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      +.......++..+.... ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+. +++++++|+.
T Consensus        25 ~~~~~~~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  103 (189)
T 3p9n_A           25 TTDRVRESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA  103 (189)
T ss_dssp             -CHHHHHHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH
T ss_pred             CcHHHHHHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH
Confidence            33444445555544332 247789999999999999988877677999999999999999999988876 8999999988


Q ss_pred             CCc
Q 033605          107 NLE  109 (115)
Q Consensus       107 ~~~  109 (115)
                      +++
T Consensus       104 ~~~  106 (189)
T 3p9n_A          104 AVV  106 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.64  E-value=8.3e-16  Score=101.65  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  114 (115)
                      .++++|||||||+|.+++.+++.++.+|+|+|.|+ ++..|++++..++.  +|+++++|+++++++++|
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~  150 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQV  150 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccc
Confidence            47889999999999999999999888999999996 88999999988887  799999999999988764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=2.9e-15  Score=94.81  Aligned_cols=78  Identities=21%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           35 RMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        35 ~~~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      .....++..+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+.  +++++++|+++++++
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  111 (267)
T 3kkz_A           32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR  111 (267)
T ss_dssp             HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC
Confidence            33444444444 456789999999999999999987667999999999999999999988776  699999999999876


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       112 ~  112 (267)
T 3kkz_A          112 N  112 (267)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.62  E-value=2.8e-15  Score=94.13  Aligned_cols=80  Identities=14%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      .....+.+.+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++....+ +++++++|+.++++
T Consensus        13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~D~~~~~~   90 (244)
T 1qam_A           13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQVLNKDILQFKF   90 (244)
T ss_dssp             CCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEEECCCGGGCCC
T ss_pred             cCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCC-CeEEEEChHHhCCc
Confidence            3345566666666666678899999999999999999875 599999999999999999886533 89999999999987


Q ss_pred             cC
Q 033605          111 RG  112 (115)
Q Consensus       111 ~~  112 (115)
                      ++
T Consensus        91 ~~   92 (244)
T 1qam_A           91 PK   92 (244)
T ss_dssp             CS
T ss_pred             cc
Confidence            63

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.62  E-value=7e-15  Score=92.22  Aligned_cols=79  Identities=20%  Similarity=0.397  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      ..+..++......++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....+.+++++++|+.++++++.|
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence            3444455544445678999999999999999998754 999999999999999999887777899999999988876543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.62  E-value=1.1e-15  Score=96.33  Aligned_cols=79  Identities=13%  Similarity=0.225  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      -....+++.+++.....++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++ .  ..+++++++|+.++++
T Consensus        14 l~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~--~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           14 LVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G--DERLEVINEDASKFPF   90 (249)
T ss_dssp             EECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C--CTTEEEECSCTTTCCG
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c--CCCeEEEEcchhhCCh
Confidence            334455666666666667889999999999999999987657999999999999999887 2  2389999999999988


Q ss_pred             cC
Q 033605          111 RG  112 (115)
Q Consensus       111 ~~  112 (115)
                      ++
T Consensus        91 ~~   92 (249)
T 3ftd_A           91 CS   92 (249)
T ss_dssp             GG
T ss_pred             hH
Confidence            76

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.62  E-value=2.6e-15  Score=96.17  Aligned_cols=82  Identities=21%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~  103 (115)
                      ...+...++.+++.++......++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+.  +++++++
T Consensus       101 ~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~  180 (284)
T 1nv8_A          101 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  180 (284)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             ceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            34456667777777766544335679999999999999999966556999999999999999999988877  4999999


Q ss_pred             cccC
Q 033605          104 DIRN  107 (115)
Q Consensus       104 d~~~  107 (115)
                      |+.+
T Consensus       181 D~~~  184 (284)
T 1nv8_A          181 EFLE  184 (284)
T ss_dssp             STTG
T ss_pred             cchh
Confidence            9976

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.61  E-value=5.2e-15  Score=93.35  Aligned_cols=64  Identities=17%  Similarity=0.041  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc------------------cCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD------------------LELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------~~~~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++...                  .+.+++++++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4678999999999999999998866 999999999999999877641                  123899999999998


Q ss_pred             ccc
Q 033605          109 EWR  111 (115)
Q Consensus       109 ~~~  111 (115)
                      +++
T Consensus       146 ~~~  148 (252)
T 2gb4_A          146 PRA  148 (252)
T ss_dssp             GGG
T ss_pred             Ccc
Confidence            875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.61  E-value=5.9e-15  Score=93.90  Aligned_cols=76  Identities=22%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...+++.+++.....++ +|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++...  .+++++++|+.++++++
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~--~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG--LPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT--SSEEEEESCGGGSCGGG
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC--CCEEEEECChhhCChhh
Confidence            34455555555566677 99999999999999999875 5999999999999999998763  38999999999998864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.61  E-value=8.2e-15  Score=92.09  Aligned_cols=78  Identities=22%  Similarity=0.278  Sum_probs=64.1

Q ss_pred             HHHHHHHHhc-CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           35 RMLYTAENSF-GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        35 ~~~~~~~~~~-~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      .....++..+ ...++.+|||+|||+|..+..+++....+|+|+|+|+.+++.++++....+.  +++++++|+.+++++
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (257)
T 3f4k_A           32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ  111 (257)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence            3344444444 3346679999999999999999976555999999999999999999988776  499999999999876


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       112 ~  112 (257)
T 3f4k_A          112 N  112 (257)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.61  E-value=7.1e-15  Score=94.52  Aligned_cols=79  Identities=22%  Similarity=0.245  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ....+++.+++.....++.+|||+|||+|.++..+++. ..+|+|+|+++.++..++++....+ +++++++|+.+++++
T Consensus        34 ~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~~-~v~vi~gD~l~~~~~  111 (295)
T 3gru_A           34 IDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELYN-NIEIIWGDALKVDLN  111 (295)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHCS-SEEEEESCTTTSCGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccCC-CeEEEECchhhCCcc
Confidence            34455556666666667889999999999999999987 4599999999999999999886333 899999999998877


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       112 ~  112 (295)
T 3gru_A          112 K  112 (295)
T ss_dssp             G
T ss_pred             c
Confidence            5

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=1.3e-14  Score=91.96  Aligned_cols=82  Identities=21%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .....+.+.+++.+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+.  +++++++|+.++
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            445566777788877778889999999999999999875456999999999999999999887765  699999999998


Q ss_pred             cccC
Q 033605          109 EWRG  112 (115)
Q Consensus       109 ~~~~  112 (115)
                      |+++
T Consensus       124 ~~~~  127 (273)
T 3bus_A          124 PFED  127 (273)
T ss_dssp             CSCT
T ss_pred             CCCC
Confidence            8765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.61  E-value=7.4e-15  Score=92.58  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=63.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      .+..++..+...++.+|||+|||+|.++..+++... +|+|+|+|+.|++.++++....+. ++.++++|++++|+++
T Consensus        25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence            344455555666888999999999999999997755 999999999999999999887765 7999999999999875

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=1.2e-14  Score=88.97  Aligned_cols=68  Identities=19%  Similarity=0.259  Sum_probs=59.0

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .++..+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++....+.  +++++++|+.+
T Consensus        46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            3444556667889999999999999999987 56999999999999999999988776  69999999987

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.61  E-value=8.7e-15  Score=97.00  Aligned_cols=81  Identities=17%  Similarity=0.231  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      .....+.+.......++.+|||+|||+|.++..+++.+..+|+|+|+| .|++.|+++....+.  +++++++|++++++
T Consensus        48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  126 (376)
T 3r0q_C           48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL  126 (376)
T ss_dssp             HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC
T ss_pred             HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc
Confidence            344455555555556788999999999999999998877799999999 999999999988876  59999999999887


Q ss_pred             cCCC
Q 033605          111 RGKY  114 (115)
Q Consensus       111 ~~~f  114 (115)
                      +++|
T Consensus       127 ~~~~  130 (376)
T 3r0q_C          127 PEKV  130 (376)
T ss_dssp             SSCE
T ss_pred             CCcc
Confidence            7543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.61  E-value=3.1e-15  Score=95.59  Aligned_cols=78  Identities=12%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC---CeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA---DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ....+++.+++.....++.+|||+|||+|.++..+++...   .+|+|+|+++.|++.++++.   ..+++++++|+.++
T Consensus        26 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           26 VDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDALTF  102 (279)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGGGC
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChhcC
Confidence            3344555556665666888999999999999999997543   23999999999999999984   23899999999999


Q ss_pred             cccC
Q 033605          109 EWRG  112 (115)
Q Consensus       109 ~~~~  112 (115)
                      ++++
T Consensus       103 ~~~~  106 (279)
T 3uzu_A          103 DFGS  106 (279)
T ss_dssp             CGGG
T ss_pred             ChhH
Confidence            8865

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.61  E-value=3.2e-15  Score=93.20  Aligned_cols=80  Identities=8%  Similarity=0.026  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC--c
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL--E  109 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~--~  109 (115)
                      +...++..+.... ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|+++....+.+++++++|++++  +
T Consensus        45 ~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~  123 (236)
T 1zx0_A           45 WETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             GGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG
T ss_pred             HHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc
Confidence            3444444444443 236789999999999999999876556999999999999999999887767899999999888  7


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +++
T Consensus       124 ~~~  126 (236)
T 1zx0_A          124 LPD  126 (236)
T ss_dssp             SCT
T ss_pred             cCC
Confidence            764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.60  E-value=9.2e-15  Score=87.91  Aligned_cols=61  Identities=25%  Similarity=0.323  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++....+. ++++++.+++.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l   82 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL   82 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH
Confidence            46789999999999999999987 56999999999999999999988776 899999888774

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.59  E-value=9.8e-15  Score=93.56  Aligned_cols=78  Identities=12%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      ...+++.+++.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++....+.  +++++++|+.++++
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~   91 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   91 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence            445566666666666788999999999999999998754 999999999999999999876654  79999999998876


Q ss_pred             c
Q 033605          111 R  111 (115)
Q Consensus       111 ~  111 (115)
                      +
T Consensus        92 ~   92 (285)
T 1zq9_A           92 P   92 (285)
T ss_dssp             C
T ss_pred             h
Confidence            5

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=1.4e-14  Score=86.59  Aligned_cols=76  Identities=18%  Similarity=0.319  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      ..+...+...+...++.+|||+|||+|.++..+++ +..+++|+|+++.+++.++++....+. +++++++|+.+ +++
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~   97 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLD   97 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-ccc
Confidence            34444555555566788999999999999999998 567999999999999999999988776 89999999877 544

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.59  E-value=1.9e-15  Score=92.35  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+.   +++++++|+.++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~  117 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  117 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence            5679999999999999987776667999999999999999999987774   7999999987653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.59  E-value=1.8e-14  Score=94.39  Aligned_cols=74  Identities=26%  Similarity=0.290  Sum_probs=62.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      .+.+.......++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++....+.  +++++++|+++++++
T Consensus        53 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  128 (340)
T 2fyt_A           53 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP  128 (340)
T ss_dssp             HHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred             HHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC
Confidence            344545444567889999999999999999987667999999997 99999999887765  899999999998877

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.59  E-value=1.9e-15  Score=95.60  Aligned_cols=72  Identities=13%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      ..+++.+....+  .+.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|++.     .+++++++|++++++++.
T Consensus        27 ~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e~~~~~~~   98 (257)
T 4hg2_A           27 RALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-----PRVTYAVAPAEDTGLPPA   98 (257)
T ss_dssp             HHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-----TTEEEEECCTTCCCCCSS
T ss_pred             HHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-----CCceeehhhhhhhcccCC
Confidence            345555555533  456999999999999999998754 999999999999877532     279999999999998864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.59  E-value=5.3e-15  Score=93.15  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      .++.+|||+|||+|..++.++.. +..+|+++|+|+.+++.++++....+. +++++++|+++++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~  144 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR  144 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc
Confidence            45779999999999999999964 567999999999999999999998887 89999999988765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.59  E-value=1.4e-14  Score=89.24  Aligned_cols=81  Identities=25%  Similarity=0.262  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC------ceeEEEcc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL------DIDFVQCD  104 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d  104 (115)
                      ......+.+.+.+...++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.++++....+.      +++++++|
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            444444455444444577899999999999999999754 36999999999999999999876543      69999999


Q ss_pred             ccCCcccC
Q 033605          105 IRNLEWRG  112 (115)
Q Consensus       105 ~~~~~~~~  112 (115)
                      +...++++
T Consensus        93 ~~~~~~~~  100 (219)
T 3jwg_A           93 LVYRDKRF  100 (219)
T ss_dssp             SSSCCGGG
T ss_pred             cccccccc
Confidence            98777643

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.59  E-value=5e-15  Score=95.47  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      ...+.+.+++.....++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++....+. +++++++|+.+++++
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~  105 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP  105 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence            33445555555566678899999999999999999774 5999999999999999999876655 899999999988765

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.59  E-value=1.7e-14  Score=93.30  Aligned_cols=78  Identities=14%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           35 RMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        35 ~~~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ...+.+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.++++....+.  +++++++|+++++++
T Consensus       103 ~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          103 AQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence            33445666665 567789999999999999999975245999999999999999999988776  699999999999876


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       183 ~  183 (312)
T 3vc1_A          183 K  183 (312)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.58  E-value=9.2e-15  Score=87.82  Aligned_cols=76  Identities=21%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           33 ASRMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        33 ~~~~~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ...+.+.+...+. ..++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++....+.  +++++++|+.+.
T Consensus        28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  106 (187)
T 2fhp_A           28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA  106 (187)
T ss_dssp             CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence            3444445554443 246789999999999999998877667999999999999999999987775  799999998763

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.58  E-value=1.8e-14  Score=88.51  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      .....+.......++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ +++++++|+.+++..+.
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~  114 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFSTAEL  114 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCCCSCC
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC-CeEEEEcchhhCCCCCC
Confidence            3444444454555778999999999999999998754 99999999999999999987755 89999999999884443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.58  E-value=2.9e-14  Score=91.50  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             HhcCCCCCCeEEEEcCCCChHH-HHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           42 NSFGDVSNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~-~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ......++.+|||+|||+|.++ ..+++...++|+|+|++++|++.|++++...+. +++++++|+.+++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC
Confidence            3456678999999999999766 445565567999999999999999999887776 8999999998876

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.58  E-value=1.9e-14  Score=91.67  Aligned_cols=81  Identities=22%  Similarity=0.242  Sum_probs=68.1

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      ..+...++.+++.++..+. .++.+|||+|||+|..+..++. .+..+|+|+|+|+.+++.++++....+. +++++++|
T Consensus        89 ~ipr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d  167 (276)
T 2b3t_A           89 LIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD  167 (276)
T ss_dssp             CCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred             cccCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence            3455667788888887765 4677999999999999999995 4567999999999999999999988776 79999999


Q ss_pred             ccCC
Q 033605          105 IRNL  108 (115)
Q Consensus       105 ~~~~  108 (115)
                      +.+.
T Consensus       168 ~~~~  171 (276)
T 2b3t_A          168 WFSA  171 (276)
T ss_dssp             TTGG
T ss_pred             hhhh
Confidence            8763

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.58  E-value=2.7e-14  Score=93.72  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ....+.+...+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ ++..++++....+.  +++++++|+++++++
T Consensus        36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence            334455555555567889999999999999999987777999999996 88999999887765  799999999998876


Q ss_pred             CCC
Q 033605          112 GKY  114 (115)
Q Consensus       112 ~~f  114 (115)
                      ++|
T Consensus       115 ~~~  117 (348)
T 2y1w_A          115 EQV  117 (348)
T ss_dssp             SCE
T ss_pred             Cce
Confidence            543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.58  E-value=2.4e-14  Score=92.15  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ......+..++..+...++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.++++....+.  +++++++|+.+
T Consensus        55 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (302)
T 3hem_A           55 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE  133 (302)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH
Confidence            344556677777777778889999999999999999975 5 6999999999999999999988776  69999999987


Q ss_pred             C
Q 033605          108 L  108 (115)
Q Consensus       108 ~  108 (115)
                      +
T Consensus       134 ~  134 (302)
T 3hem_A          134 F  134 (302)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.58  E-value=1.5e-14  Score=88.64  Aligned_cols=79  Identities=28%  Similarity=0.334  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      ...+.+.+.......++ +|||+|||+|.++..+++.+..+++|+|+|+.+++.++++....+.  +++++++|+.++++
T Consensus        29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  107 (219)
T 3dlc_A           29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI  107 (219)
T ss_dssp             HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred             cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence            34455556666554444 9999999999999999976556999999999999999999888775  79999999999887


Q ss_pred             cC
Q 033605          111 RG  112 (115)
Q Consensus       111 ~~  112 (115)
                      ++
T Consensus       108 ~~  109 (219)
T 3dlc_A          108 ED  109 (219)
T ss_dssp             CT
T ss_pred             Cc
Confidence            65

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.58  E-value=2.6e-14  Score=87.94  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC------ceeEEEcc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL------DIDFVQCD  104 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d  104 (115)
                      ......+.+.+.+...++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.++++....+.      +++++++|
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            344444444444444577899999999999999999754 46999999999999999999876554      69999999


Q ss_pred             ccCCccc
Q 033605          105 IRNLEWR  111 (115)
Q Consensus       105 ~~~~~~~  111 (115)
                      +...+.+
T Consensus        93 ~~~~~~~   99 (217)
T 3jwh_A           93 LTYQDKR   99 (217)
T ss_dssp             TTSCCGG
T ss_pred             ccccccc
Confidence            9877755

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=7.7e-15  Score=94.31  Aligned_cols=77  Identities=18%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhcc---CCceeEEEccccCCc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADL---ELDIDFVQCDIRNLE  109 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~v~~~~~d~~~~~  109 (115)
                      .+.+.+.... ..++.+|||+|||+|..+..+++  .+..+|+|+|+|+.+++.++++....   ..+++++++|+++++
T Consensus        24 ~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~  102 (299)
T 3g5t_A           24 DFYKMIDEYH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK  102 (299)
T ss_dssp             HHHHHHHHHC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG
T ss_pred             HHHHHHHHHh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC
Confidence            3444444442 34788999999999999999995  35679999999999999999998776   338999999999988


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +++
T Consensus       103 ~~~  105 (299)
T 3g5t_A          103 FLG  105 (299)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.57  E-value=1.7e-14  Score=92.70  Aligned_cols=78  Identities=18%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC----CceeEEEccccCCcc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEW  110 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~  110 (115)
                      .....++..+.. ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++....+    .+++++++|+.++++
T Consensus        70 ~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           70 SEAREFATRTGP-VSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            334444444443 44599999999999999999875 489999999999999999988766    479999999999988


Q ss_pred             cCCC
Q 033605          111 RGKY  114 (115)
Q Consensus       111 ~~~f  114 (115)
                      ++.|
T Consensus       148 ~~~f  151 (299)
T 3g2m_A          148 DKRF  151 (299)
T ss_dssp             SCCE
T ss_pred             CCCc
Confidence            6554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.57  E-value=2.5e-14  Score=91.69  Aligned_cols=82  Identities=11%  Similarity=-0.006  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHHhc----CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605           31 HIASRMLYTAENSF----GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (115)
Q Consensus        31 ~~~~~~~~~~~~~~----~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d  104 (115)
                      ....+..+.++..+    ...++.+|||+|||+|..+..+++....+|+|+|+|+.+++.++++....+.  +++++++|
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  140 (297)
T 2o57_A           61 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS  140 (297)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence            34455666677766    5567889999999999999999975234999999999999999999877665  79999999


Q ss_pred             ccCCcccC
Q 033605          105 IRNLEWRG  112 (115)
Q Consensus       105 ~~~~~~~~  112 (115)
                      +.++|+++
T Consensus       141 ~~~~~~~~  148 (297)
T 2o57_A          141 FLEIPCED  148 (297)
T ss_dssp             TTSCSSCT
T ss_pred             cccCCCCC
Confidence            99998765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.57  E-value=3.2e-14  Score=88.80  Aligned_cols=73  Identities=21%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      .++......++.+|||+|||+|.++..+++... +++|+|+|+.+++.++++....+. +++++++|++++++++
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            334444666888999999999999999997754 999999999999999999887765 7999999999998764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.57  E-value=1.7e-14  Score=88.66  Aligned_cols=75  Identities=20%  Similarity=0.297  Sum_probs=63.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ..++..+...++.+|||+|||+|.++..+++..  ..+++|+|+|+.+++.++++....+. +++++++|+.++++++
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            344455556678899999999999999999653  46999999999999999999888776 7999999999988765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.57  E-value=1.3e-14  Score=86.74  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           36 MLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      +.+.+...+. ..++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++....+.  +++++++|+.+
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   92 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER   92 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence            3444444443 446789999999999999999977667999999999999999999988776  69999999876

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.57  E-value=5.6e-15  Score=90.30  Aligned_cols=60  Identities=22%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++....+. +++++++|+.+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~  114 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMS  114 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence            5679999999999999998776666999999999999999999988876 89999999876

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.57  E-value=2.1e-14  Score=97.71  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ....+.++..+...++.+|||+|||+|.+++.+++.+..+|+|+|+|+ +++.|++++...+.  +++++++|+++++++
T Consensus       144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~  222 (480)
T 3b3j_A          144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  222 (480)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC
Confidence            344555666555557789999999999999999887677999999999 99999999888775  799999999998776


Q ss_pred             CCC
Q 033605          112 GKY  114 (115)
Q Consensus       112 ~~f  114 (115)
                      ++|
T Consensus       223 ~~f  225 (480)
T 3b3j_A          223 EQV  225 (480)
T ss_dssp             SCE
T ss_pred             CCe
Confidence            543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.56  E-value=2.4e-14  Score=89.35  Aligned_cols=65  Identities=37%  Similarity=0.397  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++++...+.  +++++++|+.+++....
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  144 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLK  144 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCC
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCC
Confidence            67899999999999999999875 6999999999999999999988886  89999999988764333

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.56  E-value=3.6e-14  Score=85.91  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~  113 (115)
                      .+...++.+|||+|||+|..+..+++.+. +++|+|+|+.+++.++++....+. +++++++|+.++++++.
T Consensus        27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (199)
T 2xvm_A           27 AVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ   97 (199)
T ss_dssp             HTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred             HhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence            33445678999999999999999998744 999999999999999999887776 89999999998876433

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.56  E-value=5.2e-14  Score=87.38  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=62.2

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           38 YTAENSFG-DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        38 ~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      +.+...+. ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++....+ +++++++|+.++++++.
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~  109 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFEEK  109 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCCSC
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCCCCC
Confidence            44444443 346789999999999999999975 35699999999999999999987766 89999999999887644

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.56  E-value=1.6e-14  Score=89.01  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|.++..+++. +..+++|+|+|+.++..|+++....+. ++.++++|+.+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~  101 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT  101 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH
Confidence            5679999999999999999964 457999999999999999999988777 8999999998765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.56  E-value=3.1e-14  Score=90.96  Aligned_cols=80  Identities=26%  Similarity=0.346  Sum_probs=64.9

Q ss_pred             HHHHHHHHhc-CCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           35 RMLYTAENSF-GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        35 ~~~~~~~~~~-~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ..+..+...+ ...++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++....+.+++++++|+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~   87 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   87 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC
Confidence            3344444443 3457789999999999999999964 3 36999999999999999999887777899999999998886


Q ss_pred             CCC
Q 033605          112 GKY  114 (115)
Q Consensus       112 ~~f  114 (115)
                      +.|
T Consensus        88 ~~f   90 (284)
T 3gu3_A           88 DKY   90 (284)
T ss_dssp             SCE
T ss_pred             CCe
Confidence            543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.56  E-value=4.7e-14  Score=90.04  Aligned_cols=77  Identities=14%  Similarity=0.203  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .....++.+++.+...++.+|||+|||+|.++..++ ..+. +|+|+|+|+.+++.++++....+.  +++++++|+.++
T Consensus        48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  126 (287)
T 1kpg_A           48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  126 (287)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence            344566677777676778899999999999999999 4544 999999999999999999887665  799999999877


Q ss_pred             c
Q 033605          109 E  109 (115)
Q Consensus       109 ~  109 (115)
                      |
T Consensus       127 ~  127 (287)
T 1kpg_A          127 D  127 (287)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.56  E-value=6.3e-14  Score=94.37  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=69.1

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      .+...++.+++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++...++. +++++++|+.
T Consensus       266 ~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~  344 (433)
T 1uwv_A          266 VNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE  344 (433)
T ss_dssp             SBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHH
Confidence            345567788888887776667789999999999999999977 55999999999999999999988877 8999999998


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      +
T Consensus       345 ~  345 (433)
T 1uwv_A          345 E  345 (433)
T ss_dssp             S
T ss_pred             H
Confidence            7

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.56  E-value=7.9e-14  Score=85.05  Aligned_cols=71  Identities=14%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ..++......++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.++++....+. +++++++|+.+.
T Consensus        30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  102 (204)
T 3e05_A           30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG  102 (204)
T ss_dssp             HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence            344455566678899999999999999999764 47999999999999999999988776 899999998654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.55  E-value=6.7e-14  Score=87.83  Aligned_cols=74  Identities=24%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...+...++..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++..  ..+++++++|+.++++++
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCC
Confidence            34455555656788999999999999999998766699999999999999999876  338999999999988764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.55  E-value=6.2e-15  Score=92.19  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      ++.+|||+|||+|..+..++. .+..+|+|+|+|+.|++.++++....+. +++++++|++++++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  134 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ  134 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcc
Confidence            677999999999999999985 4456999999999999999999988877 89999999988775

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=1.7e-14  Score=90.09  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++.+|||||||+|..+..+++....+++|||+|+.+++.|+++....+.++.++.+|++++
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~  120 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV  120 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh
Confidence            47889999999999999999987666999999999999999999988887899999987654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.55  E-value=6.5e-14  Score=86.14  Aligned_cols=62  Identities=24%  Similarity=0.314  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++..   .+++++++|+.++++++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~~~  106 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVPTS  106 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCCSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCCCC
Confidence            77899999999999999999874 499999999999999999876   378999999999887643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.55  E-value=2.5e-14  Score=94.00  Aligned_cols=65  Identities=28%  Similarity=0.357  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++....+.  +++++++|++++++++
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  131 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPV  131 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCC
Confidence            47789999999999999999988777999999995 99999999988776  4999999999998873

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.55  E-value=2.7e-14  Score=89.91  Aligned_cols=79  Identities=22%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .....+.++..+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++.... .+++++++|+.++++++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~  118 (266)
T 3ujc_A           40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPE  118 (266)
T ss_dssp             HHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCT
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCC
Confidence            34456666777666778899999999999999999742459999999999999999987665 48999999999988764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.55  E-value=2.6e-14  Score=91.25  Aligned_cols=66  Identities=27%  Similarity=0.395  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+.+++++++|+.++++.+.
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  184 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQEN  184 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCC
Confidence            3778999999999999999998755 99999999999999999998887799999999998876444

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.55  E-value=3.9e-14  Score=92.32  Aligned_cols=64  Identities=28%  Similarity=0.497  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      .++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++....+.  +++++++|+++++++
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  102 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLP  102 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCC
Confidence            4778999999999999999998776799999999 599999999887776  699999999998877

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.55  E-value=4.6e-14  Score=86.77  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|.++..+++. +..+++|+|+|+.++..|+++....+. +++++++|+.+++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~  104 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT  104 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH
Confidence            5679999999999999999964 456999999999999999999988776 8999999998876

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.54  E-value=3.7e-14  Score=88.13  Aligned_cols=66  Identities=14%  Similarity=0.089  Sum_probs=56.0

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.... .++.++.+|+.+
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~  133 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANK  133 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTC
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCC
Confidence            44444557789999999999999999975 5469999999999999999987665 489999999987

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.54  E-value=9e-14  Score=85.07  Aligned_cols=77  Identities=16%  Similarity=0.083  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      ......+...+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.++++....+. +++++++|+.+...+
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  140 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA  140 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc
Confidence            344555556666678889999999999999999987 55999999999999999999988776 899999999875543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.54  E-value=3.7e-14  Score=88.14  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ++.+|+|+|||+|.+++.+++.+ ..+|+++|+++.+++.|++++..++.  +++++++|..+...+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence            66899999999999999999865 46899999999999999999999887  699999998876544

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.54  E-value=1.8e-14  Score=88.68  Aligned_cols=66  Identities=23%  Similarity=0.234  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH----hhccCC-ceeEEEccccCCccc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASEN----AADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~----~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.+.    ....+. +++++++|++++|++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~   96 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL   96 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence            347789999999999999999975 356999999999988864333    223444 899999999999876

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.54  E-value=7.1e-14  Score=87.61  Aligned_cols=77  Identities=13%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .....++..+...++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++.... .+++++++|+.++++++
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCS
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCC
Confidence            334555566555678899999999999999998765668999999999999999988655 37999999999988764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.54  E-value=3.5e-14  Score=88.89  Aligned_cols=64  Identities=20%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.|++++..++.  +++++++|..+...+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc
Confidence            66799999999999999999765 45899999999999999999999887  599999998775544

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=1.2e-14  Score=91.87  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=59.7

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .+.+.+...+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++++.     +++++++|++++++++
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~~~~~~   92 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAENLALPD   92 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTSCCSCT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhhCCCCC
Confidence            45555556656668889999999999999999985 459999999999998876554     7899999999998874

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.53  E-value=5e-14  Score=87.36  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc-CCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR-NLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~-~~~  109 (115)
                      ++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.|++++..++.  +++++++|.. .++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc
Confidence            66799999999999999999765 46899999999999999999999887  6999999984 444

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.53  E-value=4.1e-14  Score=86.35  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.++++....+. +++++++|+.+++..+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  131 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEP  131 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccC
Confidence            4779999999999999999964 567999999999999999999988777 7999999998876433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=1.4e-13  Score=84.93  Aligned_cols=77  Identities=23%  Similarity=0.363  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...+.+.+....+  ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+.+++++++|+.++++++
T Consensus        25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~  101 (227)
T 1ve3_A           25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED  101 (227)
T ss_dssp             HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCC
Confidence            3444555554433  477999999999999999987755 9999999999999999998776668999999999888654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=5.7e-14  Score=87.49  Aligned_cols=65  Identities=23%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++....+.++.++++|+.++++++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  101 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRK  101 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCC
Confidence            67899999999999999999875 489999999999999999988776689999999998887644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.53  E-value=1.4e-14  Score=91.33  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCe--EEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQ--VIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .+++.+++.+...++.+|||+|||+|.++. +.. . .+  |+|+|+++.|++.++++....+ +++++++|+.++++++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~-~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGGCCHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCC-ceEEEECchhhCCHHH
Confidence            344445555555677899999999999999 654 3 36  9999999999999998875433 8999999999987653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.53  E-value=2.2e-13  Score=83.09  Aligned_cols=63  Identities=40%  Similarity=0.469  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|.++..+++.+..+++|+|+++.+++.++++....+. +++++++|+.+.+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  122 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV  122 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC
Confidence            36789999999999999999887667999999999999999999988777 5999999997753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.53  E-value=7.2e-14  Score=93.07  Aligned_cols=83  Identities=11%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh-------ccC---Cc
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAA-------DLE---LD   97 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~-------~~~---~~   97 (115)
                      ..+.....+..++..+...++.+|||||||+|.+++.++. .+..+++|||+++.+++.|+++..       ..+   .+
T Consensus       154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r  233 (438)
T 3uwp_A          154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE  233 (438)
T ss_dssp             GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred             cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3455666777777777778899999999999999999985 455569999999999999987642       222   37


Q ss_pred             eeEEEccccCCccc
Q 033605           98 IDFVQCDIRNLEWR  111 (115)
Q Consensus        98 v~~~~~d~~~~~~~  111 (115)
                      ++++++|+.+++++
T Consensus       234 Vefi~GD~~~lp~~  247 (438)
T 3uwp_A          234 YTLERGDFLSEEWR  247 (438)
T ss_dssp             EEEEECCTTSHHHH
T ss_pred             eEEEECcccCCccc
Confidence            99999999988864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.53  E-value=4.9e-15  Score=90.57  Aligned_cols=81  Identities=22%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             CCchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEcc
Q 033605           27 PTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d  104 (115)
                      ..+...+..+++.+++.+.. .++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++++....+.+++++++|
T Consensus         8 ~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d   87 (215)
T 4dzr_A            8 LIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAAD   87 (215)
T ss_dssp             GSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHH
T ss_pred             cCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcc
Confidence            34556677788888877655 577899999999999999999753 4599999999999999999988776678888888


Q ss_pred             ccC
Q 033605          105 IRN  107 (115)
Q Consensus       105 ~~~  107 (115)
                      +.+
T Consensus        88 ~~~   90 (215)
T 4dzr_A           88 GIE   90 (215)
T ss_dssp             HHH
T ss_pred             hHh
Confidence            866

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.52  E-value=5.6e-14  Score=88.74  Aligned_cols=68  Identities=13%  Similarity=0.241  Sum_probs=59.2

Q ss_pred             HhcCCC-CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           42 NSFGDV-SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        42 ~~~~~~-~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      ...... ++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|++++...+.  +++++++|+.+++
T Consensus        42 ~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~  112 (259)
T 3lpm_A           42 KFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT  112 (259)
T ss_dssp             HHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG
T ss_pred             HHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh
Confidence            333445 6789999999999999999976556999999999999999999998876  6999999998876

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=2.2e-13  Score=81.89  Aligned_cols=72  Identities=24%  Similarity=0.299  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-c--eeEEEccccCC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRNL  108 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--v~~~~~d~~~~  108 (115)
                      ..+.+++.+...++.+|||+|||+|.++..+++. ..+++|+|+++.+++.++++....+. +  ++++++|+.+.
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~  114 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN  114 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc
Confidence            3444455555557789999999999999999977 56999999999999999999987776 5  99999998774

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.52  E-value=1.4e-13  Score=89.12  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      ....++.+++.+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+.  +++++++|+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  153 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA  153 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC
Confidence            4556667777777678889999999999999999965234999999999999999999887765  6999999998775

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=2.1e-14  Score=91.43  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=57.9

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      +++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.++++.    .++.++++|++++++++.|
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~f  118 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFRVDKPL  118 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCCSSCE
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCcCCCc
Confidence            344445557789999999999999999984 559999999999999999876    2688999999998876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.52  E-value=1.1e-13  Score=84.25  Aligned_cols=63  Identities=22%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ++ +|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+.++.++++|+.++++++
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   92 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA   92 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCT
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCc
Confidence            44 999999999999999987754 9999999999999999998877668999999999988764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.52  E-value=3.4e-14  Score=90.70  Aligned_cols=65  Identities=23%  Similarity=0.331  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++..++.  +++++++|+.+++...
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~  191 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGEN  191 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCS
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccC
Confidence            5789999999999999999987655899999999999999999988777  4999999999887643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.52  E-value=7.2e-14  Score=84.73  Aligned_cols=63  Identities=22%  Similarity=0.392  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.++++....+.  +++++++|+++++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   87 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD   87 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh
Confidence            46789999999999999999965  346999999999999999999988776  8999999988775

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.52  E-value=1.9e-13  Score=84.75  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ......+...+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++....+ +++++++|+.+
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~  127 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTL  127 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCccc
Confidence            3455566666666678899999999999999999875 699999999999999999988777 89999999987

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.52  E-value=1.4e-13  Score=85.62  Aligned_cols=76  Identities=28%  Similarity=0.385  Sum_probs=61.9

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      ...+.+...++  ++.+|||+|||+|.++..+++.  .+++|+|+|+.+++.++++....+.+++++++|+.++++++.|
T Consensus        22 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f   97 (243)
T 3d2l_A           22 EWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPV   97 (243)
T ss_dssp             HHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCE
T ss_pred             HHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCc
Confidence            34444555433  4579999999999999999876  5999999999999999999877666899999999988776543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.52  E-value=8.7e-14  Score=92.12  Aligned_cols=79  Identities=23%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      ...+...++... ..++.+|||+|||+|.++..++..+. .+|+|+|+++.+++.|++++...+.  +++++++|+.+++
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~  281 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS  281 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            344444444443 44778999999999999999997643 4899999999999999999998887  8999999999988


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +++
T Consensus       282 ~~~  284 (373)
T 3tm4_A          282 QYV  284 (373)
T ss_dssp             GTC
T ss_pred             ccc
Confidence            763

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.52  E-value=3.1e-14  Score=88.03  Aligned_cols=61  Identities=16%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.++..+++. +...|+|+|+|+.++..|+++....+. |+.++++|+.++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~   96 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV   96 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence            5679999999999999999964 456899999999999999999988877 899999998774

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=1.5e-13  Score=86.35  Aligned_cols=73  Identities=23%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..+....++..+...++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.    .+++++++|+++++
T Consensus        18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~~   91 (259)
T 2p35_A           18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----PNTNFGKADLATWK   91 (259)
T ss_dssp             GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTTCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----CCcEEEECChhhcC
Confidence            3444556666666667889999999999999999864 4569999999999999999873    27899999999887

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.51  E-value=2.5e-13  Score=85.40  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHH-hcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           31 HIASRMLYTAEN-SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        31 ~~~~~~~~~~~~-~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .....+.+.+.. .....++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++......++.++++|+++++
T Consensus        21 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   99 (263)
T 2yqz_A           21 EVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP   99 (263)
T ss_dssp             HHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC
T ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC
Confidence            334445555433 2133467899999999999999999774 59999999999999999988322338999999999988


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +++
T Consensus       100 ~~~  102 (263)
T 2yqz_A          100 LPD  102 (263)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.51  E-value=2.3e-13  Score=86.77  Aligned_cols=71  Identities=23%  Similarity=0.368  Sum_probs=58.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      +..++..+.. ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+.  +++++++|+.+++
T Consensus        58 l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  130 (285)
T 4htf_A           58 LDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA  130 (285)
T ss_dssp             HHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG
T ss_pred             HHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh
Confidence            3344444443 467999999999999999998744 999999999999999999988775  7999999999887

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.51  E-value=8.6e-14  Score=88.80  Aligned_cols=66  Identities=23%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|.+++.+++.+.++|+++|++|.+++.+++|+..++.  +++++++|+.+++....
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~  192 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENI  192 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSC
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccC
Confidence            7889999999999999999988777999999999999999999999887  69999999988775544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.51  E-value=1.2e-13  Score=88.34  Aligned_cols=64  Identities=22%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      .++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.++++....+.  +++++++|+.+.++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  128 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM  128 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc
Confidence            47789999999999999998877666999999999999999999887665  79999999998876

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.51  E-value=2e-13  Score=86.18  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...+.+.+....  .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..    +++++++|+.++++++
T Consensus        37 ~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~  109 (263)
T 3pfg_A           37 AADLAALVRRHS--PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSLGR  109 (263)
T ss_dssp             HHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCCSC
T ss_pred             HHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCccC
Confidence            344444444442  2567999999999999999998754 99999999999999999865    6899999999988754


Q ss_pred             CC
Q 033605          113 KY  114 (115)
Q Consensus       113 ~f  114 (115)
                      .|
T Consensus       110 ~f  111 (263)
T 3pfg_A          110 RF  111 (263)
T ss_dssp             CE
T ss_pred             Cc
Confidence            43

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=1.9e-13  Score=89.89  Aligned_cols=81  Identities=26%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ..+.+...++......++.+|||+|||+|.++..++..  +..+++|+|+++.+++.|++++...+. +++++++|+.++
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~  266 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL  266 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence            34445555555555567789999999999999999964  346999999999999999999998887 799999999998


Q ss_pred             cccC
Q 033605          109 EWRG  112 (115)
Q Consensus       109 ~~~~  112 (115)
                      +.+.
T Consensus       267 ~~~~  270 (354)
T 3tma_A          267 PRFF  270 (354)
T ss_dssp             GGTC
T ss_pred             cccc
Confidence            7654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.50  E-value=5.2e-14  Score=87.43  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCC-hhHHHHH---HHHhhccCC-ceeEEEccccCCcc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDID-SDSLELA---SENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s-~~~~~~a---~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      ++.+|||+|||+|.++..+++ .+..+|+|+|+| +.|++.|   +++....+. ++.++++|++++|.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF   92 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh
Confidence            678999999999999999985 445689999999 6666666   777777676 89999999998863

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.50  E-value=2.7e-13  Score=93.97  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ++.+|||||||.|.++..+++.++ +|+|||+++.+++.|+..+.+.+. ++++.+++++++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~  126 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEV  126 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHH
Confidence            677999999999999999999866 999999999999999999888774 999999999887

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.50  E-value=3.1e-13  Score=80.49  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ..++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.++++....+.  ++ ++++|+.+
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            34444545567789999999999999999865 457999999999999999999888766  67 88888743

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.49  E-value=2e-13  Score=86.62  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=63.7

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      +...+.......++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++....+. +++++++|+.++++++
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC
Confidence            3344444444457889999999999999999965 356999999999999999999988776 8999999999988764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.49  E-value=2.2e-13  Score=85.64  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHhcCC--CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           32 IASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~--~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      ....++..++.....  .++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++....+.  +++++++|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (254)
T 2h00_A           47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  126 (254)
T ss_dssp             HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence            344555555544332  25679999999999999988853 346999999999999999999988776  4999999976


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      +
T Consensus       127 ~  127 (254)
T 2h00_A          127 T  127 (254)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.49  E-value=1.9e-13  Score=80.95  Aligned_cols=59  Identities=20%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+.+++++++|+.+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~   99 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV   99 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHH
Confidence            667999999999999999998755 59999999999999999988776688999999876

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=86.43  Aligned_cols=63  Identities=17%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc------cCC-ceeEEEccccC-Cc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD------LEL-DIDFVQCDIRN-LE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~-~v~~~~~d~~~-~~  109 (115)
                      .++.+|||||||+|.++..+++. +...++|+|+|+.|++.|++++..      .+. |+.++++|+.+ ++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~  116 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP  116 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh
Confidence            35678999999999999999964 457999999999999999987653      333 89999999986 55

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.49  E-value=2.3e-13  Score=96.95  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhc------cCC-ceeEE
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAAD------LEL-DIDFV  101 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~-~v~~~  101 (115)
                      ......++.+.+.+...++.+|||+|||+|.++..+++.+.  .+|+|+|+|+.|++.|++++..      .+. +++++
T Consensus       704 PL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi  783 (950)
T 3htx_A          704 PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY  783 (950)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred             hHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence            34444555555554445788999999999999999997652  6999999999999999986542      233 79999


Q ss_pred             EccccCCcccC
Q 033605          102 QCDIRNLEWRG  112 (115)
Q Consensus       102 ~~d~~~~~~~~  112 (115)
                      ++|+.++++++
T Consensus       784 qGDa~dLp~~d  794 (950)
T 3htx_A          784 DGSILEFDSRL  794 (950)
T ss_dssp             ESCTTSCCTTS
T ss_pred             ECchHhCCccc
Confidence            99999998764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.49  E-value=1.3e-13  Score=88.89  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ++.+++.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++....+.+++++++|+.+++
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~   88 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD   88 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence            344444545557789999999999999999975 3569999999999999999998877668999999998765

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.49  E-value=2e-13  Score=84.62  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc-cCCccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI-RNLEWR  111 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~  111 (115)
                      ..++..+..... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++..    +++++++|+ +.+|++
T Consensus        35 ~~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~  107 (226)
T 3m33_A           35 ELTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAP----HADVYEWNGKGELPAG  107 (226)
T ss_dssp             THHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCT----TSEEEECCSCSSCCTT
T ss_pred             HHHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCC----CceEEEcchhhccCCc
Confidence            344444443322 467899999999999999999874 499999999999999998822    789999999 567765

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.49  E-value=1.2e-13  Score=86.20  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+. +++++++|+.++++++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  144 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP  144 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC
Confidence            5789999999999999999876566999999999999999999877633 7899999999888765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.49  E-value=1.2e-13  Score=85.80  Aligned_cols=65  Identities=22%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++....+.  +++++++|+.+++....
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  132 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL  132 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCC
Confidence            4569999999999999999875 44899999999999999999876443  79999999998875543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.48  E-value=1.5e-13  Score=85.56  Aligned_cols=61  Identities=8%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++...   +++++++|+++++.+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~~~~  101 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQLP  101 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCCCS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHcCcC
Confidence            4677999999999999999998755 899999999999999998765   689999999887433

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.48  E-value=3.4e-13  Score=85.49  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChh------HHHHHHHHhhccCC--ceeEEE
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSD------SLELASENAADLEL--DIDFVQ  102 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~------~~~~a~~~~~~~~~--~v~~~~  102 (115)
                      .......+++.+...++.+|||+|||+|.++..+++. +. .+|+|+|+|+.      +++.++++....+.  ++++++
T Consensus        28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~  107 (275)
T 3bkx_A           28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF  107 (275)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence            3445556666666778889999999999999999965 33 69999999997      99999999887765  799999


Q ss_pred             cc---ccCCcccC
Q 033605          103 CD---IRNLEWRG  112 (115)
Q Consensus       103 ~d---~~~~~~~~  112 (115)
                      +|   ...+++++
T Consensus       108 ~d~~~~~~~~~~~  120 (275)
T 3bkx_A          108 NTNLSDDLGPIAD  120 (275)
T ss_dssp             SCCTTTCCGGGTT
T ss_pred             CChhhhccCCCCC
Confidence            98   45555543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.48  E-value=2.5e-13  Score=85.97  Aligned_cols=58  Identities=22%  Similarity=0.038  Sum_probs=49.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ..+.++......++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++....
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc
Confidence            445555666667888999999999999999998755 9999999999999999998754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.48  E-value=3.2e-13  Score=89.30  Aligned_cols=80  Identities=20%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      +.+......+...+.+.... .+.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++++..++. +++++++|+
T Consensus       193 Q~n~~~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~  270 (369)
T 3bt7_A          193 QPNAAMNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA  270 (369)
T ss_dssp             CSBHHHHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCS
T ss_pred             cCCHHHHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCH
Confidence            34455567777777776543 3578999999999999999874 55999999999999999999988887 899999998


Q ss_pred             cCC
Q 033605          106 RNL  108 (115)
Q Consensus       106 ~~~  108 (115)
                      +++
T Consensus       271 ~~~  273 (369)
T 3bt7_A          271 EEF  273 (369)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.48  E-value=9.9e-14  Score=89.43  Aligned_cols=68  Identities=28%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHH--hcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           46 DVSNKVVADFGCGCGTLGAAAT--LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~--~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ..++.+|||+|||+|..+..++  ..+..+|+|+|+|+.+++.++++....+.  +++++++|+.++++++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCC
Confidence            3477899999999999999985  34567999999999999999999988776  59999999999887644

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.48  E-value=2.8e-13  Score=85.48  Aligned_cols=76  Identities=28%  Similarity=0.368  Sum_probs=60.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+.+.+.....+... ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++...++.+++++++|+.+
T Consensus       103 ~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~  178 (254)
T 2nxc_A          103 HHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA  178 (254)
T ss_dssp             CSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH
T ss_pred             CCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence            334444444444433 34678999999999999999988766 99999999999999999988776668888888765

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.47  E-value=5.1e-13  Score=88.66  Aligned_cols=78  Identities=21%  Similarity=0.307  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhcC--CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           33 ASRMLYTAENSFG--DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        33 ~~~~~~~~~~~~~--~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      +..+++.+.....  ..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....+.+++++++|+.+.+.
T Consensus       216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~  294 (381)
T 3dmg_A          216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT  294 (381)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC
T ss_pred             HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc
Confidence            3445555544432  33677999999999999999998754 99999999999999999999888789999999988776


Q ss_pred             c
Q 033605          111 R  111 (115)
Q Consensus       111 ~  111 (115)
                      +
T Consensus       295 ~  295 (381)
T 3dmg_A          295 E  295 (381)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.47  E-value=3.6e-13  Score=87.39  Aligned_cols=76  Identities=18%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      .....+...+...++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.++++....+. +++++++|+.+.+.
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~  140 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence            455566666666688899999999999999998653  24799999999999999999988776 79999999987543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.47  E-value=2.5e-13  Score=82.83  Aligned_cols=66  Identities=20%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|..+..++.....+++|+|+|+.+++.++++....+.+++++++|+.++++++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   87 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKD   87 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCC
Confidence            357899999999999855544333459999999999999999998766668999999999988764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=4.5e-13  Score=85.29  Aligned_cols=64  Identities=23%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ..++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++..++. ++.++++|+.+++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~  182 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE  182 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC
Confidence            346789999999999999999975 456999999999999999999998887 8999999998873

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.47  E-value=2.4e-13  Score=83.58  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=49.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ...++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.+.+...... ++.++.+|+...
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~-~v~~~~~d~~~~  117 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFDASKP  117 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSCTTCG
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC-CeEEEEcCCCCc
Confidence            3457789999999999999999864 34599999999998876666554433 788899998763

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=4.5e-13  Score=81.49  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .+.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++..    +++++++|+.++++++
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~  100 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP----SVTFHHGTITDLSDSP  100 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT----TSEEECCCGGGGGGSC
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC----CCeEEeCcccccccCC
Confidence            378999999999999999998755 99999999999999998743    6899999999988764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.46  E-value=2.6e-13  Score=85.09  Aligned_cols=60  Identities=18%  Similarity=0.360  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc--------CC-ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL--------EL-DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--------~~-~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...        +. ++.++++|+.+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~  118 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMK  118 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHH
Confidence            56799999999999999999754 458999999999999999987754        55 89999999886

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.46  E-value=6.2e-13  Score=81.24  Aligned_cols=65  Identities=20%  Similarity=0.314  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.++++.... .+++++++|+.++++++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~i~~~~~d~~~~~~~~  105 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-PQLRWETMDVRKLDFPS  105 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-TTCEEEECCTTSCCSCS
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC-CCcEEEEcchhcCCCCC
Confidence            467899999999999999999876559999999999999999988652 27999999999888764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.46  E-value=3.4e-13  Score=81.42  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      .++.+|||+|||+|.++..++. .+..+|+++|+|+.|++.+++++...+....+...|....+.+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~  113 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYK  113 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTT
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCC
Confidence            3678999999999999999985 4456999999999999999999998877323333665544443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.46  E-value=8.9e-13  Score=80.61  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ..++..+.. ++.+|||+|||+|.++..+   +..+++|+|+|+.+++.++++.    .++.++++|+.++++++
T Consensus        27 ~~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~   93 (211)
T 2gs9_A           27 ERALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPG   93 (211)
T ss_dssp             HHHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCS
T ss_pred             HHHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCC
Confidence            334444333 7789999999999998877   3349999999999999999887    26899999999988765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.46  E-value=4.9e-13  Score=82.70  Aligned_cols=64  Identities=27%  Similarity=0.483  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC------ceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL------DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~~~~  112 (115)
                      ++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++....+.      ++.++++|+..+++++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   99 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD   99 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC
Confidence            678999999999999999998744 999999999999999999887665      6899999999988765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.46  E-value=4.7e-15  Score=93.09  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=60.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ..+.+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++... ..+++++++|+.+++++
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-NTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-CSEEEECCSCCTTTTCC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc-CCceEEEECChhhcCcc
Confidence            34444555555678899999999999999999875 6999999999999998887652 22899999999998876

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.46  E-value=2.7e-13  Score=84.38  Aligned_cols=61  Identities=13%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...+.  +++++++|+.+.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ  134 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence            6789999999999999999973 357999999999999999999988776  799999999764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=6.3e-13  Score=82.70  Aligned_cols=71  Identities=24%  Similarity=0.388  Sum_probs=58.8

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      +...+...++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.++++....  +++++++|+.++++++
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT--GITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS--SEEEEECCGGGCCCCT
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC--CceEEEcChhhccCCC
Confidence            3444455577899999999999999999775559999999999999999887542  6899999999888754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.46  E-value=1.4e-13  Score=86.51  Aligned_cols=63  Identities=35%  Similarity=0.393  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ....++..++......++.+|||+|||+|.++..+++.   +..+|+|+|+|+.+++.|+++....
T Consensus        35 la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           35 LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            34466777666655446779999999999999999864   3469999999999999999887655

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.46  E-value=7.1e-13  Score=82.08  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           46 DVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        46 ~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ..++.+|||+||| +|.++..+++....+|+|+|+++.+++.|+++....+.+++++++|+..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  115 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI  115 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchh
Confidence            3477899999999 9999999997635599999999999999999998887789999999643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.45  E-value=9.6e-13  Score=88.45  Aligned_cols=78  Identities=21%  Similarity=0.229  Sum_probs=64.4

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+......+.+.+.+   ..++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++...++.+++++++|+.+
T Consensus       273 ~n~~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~  348 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE  348 (425)
T ss_dssp             SBHHHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTT
T ss_pred             cCHHHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHH
Confidence            345556666666665   246789999999999999999986 4599999999999999999998776669999999988


Q ss_pred             Cc
Q 033605          108 LE  109 (115)
Q Consensus       108 ~~  109 (115)
                      +.
T Consensus       349 ~~  350 (425)
T 2jjq_A          349 VS  350 (425)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.45  E-value=6.8e-13  Score=82.62  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      ..+...+.+.+...++.+|||+|||+|.++..+++....+|+++|+++.+++.++++....+. +++++.+|+
T Consensus        77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~  149 (235)
T 1jg1_A           77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG  149 (235)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc
Confidence            334455555556667889999999999999999975326999999999999999999988776 899999997

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.45  E-value=7.2e-13  Score=79.54  Aligned_cols=71  Identities=20%  Similarity=0.240  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      +...+.......++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++....+.  +++++++|+.+
T Consensus        21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   93 (192)
T 1l3i_A           21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (192)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence            33444444456678899999999999999999766 6999999999999999999887765  79999999866

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.45  E-value=8.8e-13  Score=80.90  Aligned_cols=74  Identities=18%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ......+...+...++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.++++....+. +++++++|+..
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  139 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL  139 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence            3444455555566678899999999999999999653  26999999999999999999887765 79999999854

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.45  E-value=6.2e-13  Score=79.20  Aligned_cols=71  Identities=18%  Similarity=0.261  Sum_probs=54.3

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+...+..+++.+... . .++.+|||+|||+|.++..+++.+  +|+|+|+|+.|++.        ..+++++++|+.+
T Consensus         5 ~P~~~~~~l~~~l~~~-~-~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~   72 (170)
T 3q87_B            5 EPGEDTYTLMDALERE-G-LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLC   72 (170)
T ss_dssp             CCCHHHHHHHHHHHHH-T-CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTT
T ss_pred             CcCccHHHHHHHHHhh-c-CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhh
Confidence            4455566666664331 1 366799999999999999999875  99999999999988        2278999999987


Q ss_pred             Cccc
Q 033605          108 LEWR  111 (115)
Q Consensus       108 ~~~~  111 (115)
                       +++
T Consensus        73 -~~~   75 (170)
T 3q87_B           73 -SIN   75 (170)
T ss_dssp             -TBC
T ss_pred             -hcc
Confidence             443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.45  E-value=5e-13  Score=82.79  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC---ceeEE
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL---DIDFV  101 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~  101 (115)
                      +........++..+....+..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+.   +++++
T Consensus        35 p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~  114 (221)
T 3dr5_A           35 PAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL  114 (221)
T ss_dssp             CCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence            3344555666666666544334459999999999999999963 3 56999999999999999999987665   59999


Q ss_pred             EccccCC
Q 033605          102 QCDIRNL  108 (115)
Q Consensus       102 ~~d~~~~  108 (115)
                      ++|+.++
T Consensus       115 ~gda~~~  121 (221)
T 3dr5_A          115 LSRPLDV  121 (221)
T ss_dssp             CSCHHHH
T ss_pred             EcCHHHH
Confidence            9998664

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=7.4e-13  Score=82.42  Aligned_cols=73  Identities=21%  Similarity=0.345  Sum_probs=59.3

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .+...+....+  ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..  ..+++++++|+.++++++
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~  114 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE--GPDLSFIKGDLSSLPFEN  114 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC--BTTEEEEECBTTBCSSCT
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc--cCCceEEEcchhcCCCCC
Confidence            44555554433  677999999999999999998754 99999999999999998752  237999999999998764

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.44  E-value=7e-13  Score=85.71  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-------CC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-------EL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~-~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.++++....       .. +++++++|+++++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  103 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKEL  103 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccc
Confidence            67799999999999999998765679999999999999999987653       22 7999999999886

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.44  E-value=1.3e-12  Score=82.04  Aligned_cols=73  Identities=22%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC-c-eeEEEccccCC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNL  108 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~-v~~~~~d~~~~  108 (115)
                      ....+.......++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|+++....+. + ++++++|+.+.
T Consensus        81 ~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           81 DAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            3445556666678889999999999999999965 3 56999999999999999999988776 4 99999999864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.44  E-value=1.8e-12  Score=81.40  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhcc-CC-ceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADL-EL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~-~~-~v~~~~~d~~~~~~~~  112 (115)
                      ...++......++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++.... +. +++++++|+.+.++++
T Consensus        85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            345555556668889999999999999999975 3 469999999999999999998766 54 8999999998876654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.43  E-value=9.7e-13  Score=87.66  Aligned_cols=86  Identities=27%  Similarity=0.343  Sum_probs=67.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC-------------------------------------
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA-------------------------------------   71 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~-------------------------------------   71 (115)
                      .....+.+...++......++.+|||++||+|.++++++....                                     
T Consensus       182 ~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  261 (393)
T 3k0b_A          182 SAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYD  261 (393)
T ss_dssp             SCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhccc
Confidence            3344555555566665555778999999999999998885321                                     


Q ss_pred             --CeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605           72 --DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        72 --~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  114 (115)
                        .+|+|+|+++.|++.|+.++...+.  +++++++|+.+++.++.|
T Consensus       262 ~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~f  308 (393)
T 3k0b_A          262 QPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEY  308 (393)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCS
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCC
Confidence              3699999999999999999998887  599999999998876543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.43  E-value=2.4e-12  Score=85.23  Aligned_cols=63  Identities=24%  Similarity=0.345  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC-Ccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN-LEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~-~~~  110 (115)
                      .++.+|||+| |+|.++..++..+. .+|+++|+++.+++.|+++....+. +++++++|+.+ +|.
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~  236 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD  236 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh
Confidence            3678999999 99999999987654 7999999999999999999988777 89999999988 653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.43  E-value=6.7e-13  Score=85.21  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+++....
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~   93 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHY   93 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence            6789999999999999999964 5679999999999999999986543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.43  E-value=1.3e-12  Score=81.08  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=57.5

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      .+...+....  .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++..    ++.++++|+.++++++.
T Consensus        29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~  100 (239)
T 3bxo_A           29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFRLGRK  100 (239)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCCCSSC
T ss_pred             HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC----CCEEEECCHHHcccCCC
Confidence            3444444432  4678999999999999999997655 99999999999999998753    68999999998877444

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=9e-13  Score=83.39  Aligned_cols=67  Identities=19%  Similarity=0.251  Sum_probs=57.5

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhc---cCC--ceeEEEccccCC
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAAD---LEL--DIDFVQCDIRNL  108 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~~--~v~~~~~d~~~~  108 (115)
                      ......++.+|||+|||+|.+++.+++.. ..+|+|+|+++.+++.|++++..   .+.  +++++++|+.++
T Consensus        30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR  102 (260)
T ss_dssp             HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred             HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence            34444567899999999999999999653 56999999999999999999988   766  599999999887

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.42  E-value=4.4e-13  Score=82.76  Aligned_cols=60  Identities=15%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|..+..+++.  ...+|+++|+++.+++.|++++...+.  +++++++|+.+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD  121 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence            6789999999999999999973  256999999999999999999988776  69999999854

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.42  E-value=9.2e-13  Score=87.56  Aligned_cols=83  Identities=24%  Similarity=0.323  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC---------------------------------------C
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA---------------------------------------D   72 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~---------------------------------------~   72 (115)
                      ..+.+...++......++.+|||+|||+|.++++++....                                       .
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            3445555566665556778999999999999999875321                                       4


Q ss_pred             eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605           73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        73 ~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  114 (115)
                      +|+|+|+++.+++.|+.++...+.  ++++.++|+.+++.++.|
T Consensus       259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~  302 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEF  302 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBS
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCC
Confidence            799999999999999999998887  699999999998766543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.42  E-value=6.4e-13  Score=84.97  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=55.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-----ceeEEEccccCCc
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRNLE  109 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~~~  109 (115)
                      .+...+...++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++......     ++.+..+|+.+++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            333333334678999999999999999998755 999999999999999987643221     6888999988876

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.42  E-value=1.1e-12  Score=81.79  Aligned_cols=66  Identities=11%  Similarity=0.064  Sum_probs=55.3

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +.+...++.+|||+|||+|.++..+++.  +..+|+|+|+++.|++.+++++...+ |+..+.+|....
T Consensus        71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~-ni~~V~~d~~~p  138 (233)
T 4df3_A           71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR-NIFPILGDARFP  138 (233)
T ss_dssp             SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT-TEEEEESCTTCG
T ss_pred             hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc-CeeEEEEeccCc
Confidence            3446678999999999999999999964  34699999999999999999887655 888888887653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.42  E-value=1.4e-12  Score=86.42  Aligned_cols=69  Identities=14%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRN  107 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~  107 (115)
                      .+++.+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++...++.    +++++.+|+.+
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~  286 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  286 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence            34555565566899999999999999999753 57999999999999999999988764    58889999887

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.41  E-value=1.6e-12  Score=79.56  Aligned_cols=58  Identities=21%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC-CceeEEEccccCC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNL  108 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~  108 (115)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++    .+ .+++++++|+.++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~  102 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW  102 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC
Confidence            3466799999999999999999774 499999999999999988    33 2899999999887

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.41  E-value=2.3e-12  Score=81.93  Aligned_cols=77  Identities=21%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhcc-C--C-ceeEEEccccCCc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL-E--L-DIDFVQCDIRNLE  109 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~--~-~v~~~~~d~~~~~  109 (115)
                      ....++......++.+|||+|||+|.++..+++.  +..+++++|+++.+++.++++.... +  . +++++++|+.+.+
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            3445555556667889999999999999999964  3569999999999999999998776 4  2 8999999998887


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +++
T Consensus       167 ~~~  169 (280)
T 1i9g_A          167 LPD  169 (280)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.41  E-value=1.5e-12  Score=82.89  Aligned_cols=69  Identities=17%  Similarity=0.331  Sum_probs=56.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhcc-CC-ceeEEEccccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL-EL-DIDFVQCDIRN  107 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~v~~~~~d~~~  107 (115)
                      .+...+...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++.... +. +++++++|+.+
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~  173 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD  173 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc
Confidence            4455555667889999999999999999965  3569999999999999999998877 65 89999999987

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=9.1e-13  Score=82.30  Aligned_cols=62  Identities=24%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++...  .+++++++|+.+++++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~  116 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA--ANISYRLLDGLVPEQA  116 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC--TTEEEEECCTTCHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc--cCceEEECcccccccc
Confidence            4677999999999999999998756 999999999999999998732  2799999999886643

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.41  E-value=2.6e-12  Score=86.34  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHH-------HHHhhccC--C-ceeEEE
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELA-------SENAADLE--L-DIDFVQ  102 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a-------~~~~~~~~--~-~v~~~~  102 (115)
                      ...+..+++.+...++.+|||+|||+|.++..+++ .+..+|+|+|+++.+++.|       ++++...+  . ++++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            44555566666666888999999999999999997 4556899999999999988       88887766  3 899998


Q ss_pred             cccc
Q 033605          103 CDIR  106 (115)
Q Consensus       103 ~d~~  106 (115)
                      +|..
T Consensus       308 gD~~  311 (433)
T 1u2z_A          308 KKSF  311 (433)
T ss_dssp             SSCS
T ss_pred             cCcc
Confidence            7643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.41  E-value=1.5e-12  Score=86.56  Aligned_cols=61  Identities=20%  Similarity=0.215  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|.+++.++..+..+|+|+|+|+.+++.|++++..++.   +++++++|+.+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~  274 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD  274 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH
Confidence            36789999999999999999987667999999999999999999988875   69999999865

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.41  E-value=1.9e-12  Score=80.05  Aligned_cols=63  Identities=16%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ...++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++.... .+++++++|+.+.
T Consensus        70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~  134 (227)
T 1g8a_A           70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKP  134 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCG
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCc
Confidence            3457789999999999999999964 3 369999999999999999988765 4899999999873

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.40  E-value=1.3e-12  Score=79.91  Aligned_cols=71  Identities=18%  Similarity=0.147  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      ..+..++..+  .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.     ++.++++|+.+++..+.
T Consensus        32 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~~~~~  102 (211)
T 3e23_A           32 ATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GRPVRTMLFHQLDAIDA  102 (211)
T ss_dssp             HHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCCCCSC
T ss_pred             HHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CCceEEeeeccCCCCCc
Confidence            3444444432  3677999999999999999998744 9999999999999999987     46788899888874333

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.40  E-value=2e-12  Score=80.65  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      ..+.+|||+|||+|-++..+.  +...++|+|+++.+++.++++....+.+..+..+|....+++..|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~  169 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAG  169 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBC
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCc
Confidence            467899999999999999887  667999999999999999999888888899999999988887654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.40  E-value=2.3e-12  Score=85.63  Aligned_cols=83  Identities=22%  Similarity=0.293  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC---------------------------------------C
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA---------------------------------------D   72 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~---------------------------------------~   72 (115)
                      ..+.+...++......++..+||++||+|.++++++....                                       .
T Consensus       178 l~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  257 (384)
T 3ldg_A          178 IKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL  257 (384)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence            3445555555555555778999999999999998885311                                       3


Q ss_pred             eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605           73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        73 ~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  114 (115)
                      +++|+|+++.|++.|++|+...+.  +++++++|+.+++.++.|
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~f  301 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKIN  301 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCS
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCc
Confidence            699999999999999999998887  599999999998876543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.38  E-value=1.3e-12  Score=85.33  Aligned_cols=60  Identities=22%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.+++.++..+. +|+++|+|+.+++.+++++..++.   +++++++|+.++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~  215 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF  215 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH
Confidence            567999999999999999998766 999999999999999999987776   399999998764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.38  E-value=2.7e-12  Score=85.55  Aligned_cols=62  Identities=29%  Similarity=0.415  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|.+++.++..+..+|+|+|+|+.+++.|++++..++.   +++++++|+.++
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~  283 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL  283 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH
Confidence            36789999999999999999987667999999999999999999988876   799999998764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.38  E-value=5.6e-12  Score=82.00  Aligned_cols=76  Identities=16%  Similarity=0.204  Sum_probs=62.4

Q ss_pred             HHHHHHhcCC--CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           37 LYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        37 ~~~~~~~~~~--~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ...++..++.  .++.+|||+|||+|..+..+++. +..+++++|++ .+++.++++....+.  +++++.+|+.+.+++
T Consensus       152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  230 (335)
T 2r3s_A          152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG  230 (335)
T ss_dssp             HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence            3455555555  57789999999999999999864 45699999999 999999999887665  699999999887776


Q ss_pred             CC
Q 033605          112 GK  113 (115)
Q Consensus       112 ~~  113 (115)
                      +.
T Consensus       231 ~~  232 (335)
T 2r3s_A          231 ND  232 (335)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.38  E-value=8e-12  Score=78.04  Aligned_cols=70  Identities=23%  Similarity=0.347  Sum_probs=59.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .+.......++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+.  +++++.+|+.+..
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            4445555567889999999999999999977 66999999999999999999877664  7999999988754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.37  E-value=1.3e-12  Score=82.09  Aligned_cols=60  Identities=13%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+.  +++++++|+.+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            6789999999999999999964 3 56999999999999999999988776  69999999865

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.37  E-value=1.7e-12  Score=86.20  Aligned_cols=66  Identities=27%  Similarity=0.377  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhcc-----C----CceeEEEccccCC------c
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL-----E----LDIDFVQCDIRNL------E  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~----~~v~~~~~d~~~~------~  109 (115)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.++++....     +    .+++++++|++++      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            46789999999999999999864  3569999999999999999987643     2    3899999999987      6


Q ss_pred             ccC
Q 033605          110 WRG  112 (115)
Q Consensus       110 ~~~  112 (115)
                      +++
T Consensus       162 ~~~  164 (383)
T 4fsd_A          162 VPD  164 (383)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            664

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.37  E-value=3.6e-12  Score=79.46  Aligned_cols=63  Identities=13%  Similarity=-0.007  Sum_probs=49.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ...++.+|||+|||+|..+..+++.  +..+|+|+|+++.|+..+.+..... .|+.++++|+...
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~  137 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFP  137 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCG
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccc
Confidence            3667899999999999999999864  3469999999999876554444332 3899999998764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.37  E-value=3.8e-12  Score=81.32  Aligned_cols=74  Identities=27%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeC-ChhHHHHHHHHh-----hccCC------ceeE
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI-DSDSLELASENA-----ADLEL------DIDF  100 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~~~~------~v~~  100 (115)
                      +..+.+.+.......++.+|||+|||+|.+++.+++.+..+|+|+|+ ++.+++.++++.     ...+.      ++++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV  143 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence            44556666555444577899999999999999998876669999999 899999999998     43332      4777


Q ss_pred             EEcccc
Q 033605          101 VQCDIR  106 (115)
Q Consensus       101 ~~~d~~  106 (115)
                      +..|..
T Consensus       144 ~~~~~~  149 (281)
T 3bzb_A          144 VPYRWG  149 (281)
T ss_dssp             EECCTT
T ss_pred             EEecCC
Confidence            765543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.37  E-value=1.7e-12  Score=80.08  Aligned_cols=73  Identities=10%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ....++..+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.  +++++++|+.+
T Consensus        45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           45 TQGKFLQLLVQI---QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            334444444333   36789999999999999999964 3 46999999999999999999988776  59999999865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.37  E-value=7e-12  Score=77.37  Aligned_cols=61  Identities=26%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.  +++++++|+.+.
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  128 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT  128 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH
Confidence            6779999999999999999964 3 56999999999999999999988776  599999998543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.37  E-value=7.8e-12  Score=77.29  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcC------CCeEEEEeCChhHHHHHHHHhhccC-----C-ceeEEEccccCCc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLG------ADQVIAIDIDSDSLELASENAADLE-----L-DIDFVQCDIRNLE  109 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~~~  109 (115)
                      ..++.+|||+|||+|.++..+++..      ..+|+++|+++.+++.++++....+     . +++++++|+.+..
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  153 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN  153 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcc
Confidence            3467899999999999999998753      2599999999999999999988765     3 8999999987743

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.37  E-value=2.6e-12  Score=78.65  Aligned_cols=78  Identities=22%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~  103 (115)
                      ........++..+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.  +++++++
T Consensus        39 ~~~~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  115 (210)
T 3c3p_A           39 IVDRQTGRLLYLLARI---KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG  115 (210)
T ss_dssp             CCCHHHHHHHHHHHHH---HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES
T ss_pred             CcCHHHHHHHHHHHHh---hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe
Confidence            3344445555554433   25679999999999999999964 3 46999999999999999999887665  6999999


Q ss_pred             cccCC
Q 033605          104 DIRNL  108 (115)
Q Consensus       104 d~~~~  108 (115)
                      |+.+.
T Consensus       116 d~~~~  120 (210)
T 3c3p_A          116 DPLGI  120 (210)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            98653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.37  E-value=1.7e-12  Score=82.66  Aligned_cols=66  Identities=12%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      ...++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.++++....+. +++++++|+.+++.
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD  148 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch
Confidence            4457789999999999999999863  336999999999999999999998887 89999999877653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.37  E-value=5e-12  Score=82.54  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=58.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccC------------CceeEEEc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLE------------LDIDFVQC  103 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~------------~~v~~~~~  103 (115)
                      ..++..+...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|+++....+            .+++++++
T Consensus        95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            33444445668889999999999999999975 43 699999999999999999987532            37999999


Q ss_pred             cccCC
Q 033605          104 DIRNL  108 (115)
Q Consensus       104 d~~~~  108 (115)
                      |+.+.
T Consensus       175 d~~~~  179 (336)
T 2b25_A          175 DISGA  179 (336)
T ss_dssp             CTTCC
T ss_pred             ChHHc
Confidence            99876

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.36  E-value=5.8e-12  Score=82.38  Aligned_cols=60  Identities=32%  Similarity=0.443  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|.+++. ++ +..+|+|+|+|+.+++.+++++..++.  +++++++|+.++.
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc
Confidence            678999999999999999 87 577999999999999999999998876  7999999998764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.36  E-value=1.1e-11  Score=81.58  Aligned_cols=76  Identities=18%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ....+++.+...++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++....+.  +++++.+|+.+.++++
T Consensus       178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  256 (359)
T 1x19_A          178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE  256 (359)
T ss_dssp             HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC
T ss_pred             hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC
Confidence            3455666666667789999999999999999964 4569999999 9999999999887665  5999999998877653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.36  E-value=2.5e-12  Score=84.25  Aligned_cols=87  Identities=16%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             ccccCCCchhhHHHHHHHHHHhc-CCCCCCeEEEEcCCCChHHHHHHhcC-C-----CeEEEEeCChhHHHHHHHHhhcc
Q 033605           22 ELEQYPTGPHIASRMLYTAENSF-GDVSNKVVADFGCGCGTLGAAATLLG-A-----DQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDlG~G~G~~~~~~~~~~-~-----~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ....+.++......+... +..+ ...++.+|||+|||+|.++..+++.. .     .+++|+|+++.++..|+.+....
T Consensus       104 ~~g~~~TP~~i~~~~~~l-l~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~  182 (344)
T 2f8l_A          104 QVNHQMTPDSIGFIVAYL-LEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ  182 (344)
T ss_dssp             CGGGCCCCHHHHHHHHHH-HHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ccCcCCChHHHHHHHHHH-HHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC
Confidence            345566777555443333 3322 33356799999999999999988542 1     58999999999999999998877


Q ss_pred             CCceeEEEccccCCc
Q 033605           95 ELDIDFVQCDIRNLE  109 (115)
Q Consensus        95 ~~~v~~~~~d~~~~~  109 (115)
                      +.++.++++|+....
T Consensus       183 g~~~~i~~~D~l~~~  197 (344)
T 2f8l_A          183 RQKMTLLHQDGLANL  197 (344)
T ss_dssp             TCCCEEEESCTTSCC
T ss_pred             CCCceEEECCCCCcc
Confidence            768899999987643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.36  E-value=3e-12  Score=79.59  Aligned_cols=65  Identities=18%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+...++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.+.++.... .+++++++|+.+.
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~  138 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHP  138 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCG
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCCh
Confidence            334556789999999999999999965  3469999999999887777766654 3799999999873

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.36  E-value=1.1e-11  Score=78.25  Aligned_cols=59  Identities=24%  Similarity=0.362  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++...     .++++|+.++++++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~-----~~~~~d~~~~~~~~  112 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPS  112 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC-----CEEECcHHHCCCCC
Confidence            678999999999999999997744 999999999999999988652     28889999888764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.35  E-value=2.3e-12  Score=83.21  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-------ceeEEEccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDI  105 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~  105 (115)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+.       ++++.+.|+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence            4679999999999877666655556999999999999999998766543       256777777

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.35  E-value=8.5e-12  Score=77.06  Aligned_cols=65  Identities=23%  Similarity=0.206  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccC-----C-ceeEEEccccCCcc
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLE-----L-DIDFVQCDIRNLEW  110 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~~~~  110 (115)
                      ..++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++....+     . +++++++|+...+.
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA  147 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc
Confidence            446789999999999999999864 33 599999999999999999887654     2 79999999876543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.35  E-value=2.7e-12  Score=84.09  Aligned_cols=73  Identities=15%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+.+++.+....+.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+.++.++.+|+.+.+
T Consensus       185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~  258 (343)
T 2pjd_A          185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV  258 (343)
T ss_dssp             HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC
T ss_pred             HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc
Confidence            3444555544456799999999999999999764 359999999999999999999887777788899987654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.35  E-value=9.3e-12  Score=74.81  Aligned_cols=61  Identities=21%  Similarity=0.380  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++..    +++++++|+.++++++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~~~~~  105 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVDQISE  105 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTSCCCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccCCCCC
Confidence            377899999999999999999774 499999999999999998864    5889999999887653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.35  E-value=4.7e-12  Score=82.17  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      .+...++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.++++....+. +++++++|+.+++.
T Consensus       113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~  183 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE  183 (315)
T ss_dssp             HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc
Confidence            334557789999999999999999964  346999999999999999999988887 89999999988764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.34  E-value=1.3e-11  Score=78.61  Aligned_cols=71  Identities=20%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ..++......++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++....+.  +++++++|+.+.
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  176 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  176 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence            34455556667889999999999999999965 3 56999999999999999999887775  799999998775

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.34  E-value=1.8e-11  Score=75.95  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...+.  +++++++|+.+.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  117 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL  117 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence            6779999999999999999964 356999999999999999999887776  699999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.33  E-value=8.8e-12  Score=78.35  Aligned_cols=74  Identities=19%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ....++..+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+.  +++++++|+.+
T Consensus        66 ~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~  142 (247)
T 1sui_A           66 DEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  142 (247)
T ss_dssp             HHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence            344445444443   36679999999999999999964 3 46999999999999999999988776  79999999865


Q ss_pred             C
Q 033605          108 L  108 (115)
Q Consensus       108 ~  108 (115)
                      .
T Consensus       143 ~  143 (247)
T 1sui_A          143 V  143 (247)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.33  E-value=2.1e-11  Score=77.05  Aligned_cols=62  Identities=18%  Similarity=0.287  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++..    ++.++.+|++++++++
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~  146 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVASSHRLPFSD  146 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTSCSBCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC----CcEEEEcchhhCCCCC
Confidence            46789999999999999999875 35699999999999999988753    6789999999888764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.32  E-value=3e-12  Score=80.23  Aligned_cols=73  Identities=18%  Similarity=0.114  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ...++..+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+.  +++++++|+.+.
T Consensus        48 ~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~  124 (242)
T 3r3h_A           48 QAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT  124 (242)
T ss_dssp             HHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            33444444432   36779999999999999999963 2 56999999999999999999988776  799999998653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.32  E-value=3.7e-12  Score=80.62  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=41.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      ...++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhc
Confidence            3446789999999999988877766666899999999999999987644

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.32  E-value=2.1e-11  Score=76.04  Aligned_cols=60  Identities=12%  Similarity=0.087  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.  +++++++|+.+
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            6789999999999999999965 3 46999999999999999999887776  49999999765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.32  E-value=5.2e-12  Score=84.34  Aligned_cols=60  Identities=23%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc--CC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL--EL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~-~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.+++++...  +. +++++++|+.++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~  155 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY  155 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHh
Confidence            47899999999999999998774 49999999999999999999877  66 899999999874

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.31  E-value=7.9e-12  Score=83.28  Aligned_cols=61  Identities=28%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..++.  +++++++|+.++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~  279 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE  279 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH
Confidence            6789999999999999999987667999999999999999999998887  799999998764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.31  E-value=1.9e-11  Score=80.60  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC--cccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL--EWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~--~~~~  112 (115)
                      ..+.+|||+|||+|..+..+++ .+..+++++|+ +.+++.++++....+.  +++++.+|+.+.  |+++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~  247 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPT  247 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCC
Confidence            3667999999999999999986 45669999999 9999999999887775  799999999886  4554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.31  E-value=5.6e-12  Score=78.06  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=52.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CC------CeEEEEeCChhHHHHHHHHhhccC-----C-ceeEEEccccC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLE-----L-DIDFVQCDIRN  107 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~------~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~  107 (115)
                      ..++.+|||+|||+|..+..+++. +.      .+|+++|+++.+++.++++....+     . +++++++|+.+
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  156 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK  156 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc
Confidence            346789999999999999999863 32      499999999999999999887654     2 79999999876

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.31  E-value=4.7e-11  Score=78.87  Aligned_cols=74  Identities=16%  Similarity=0.070  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ...+...++..+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++....+.  +++++.+|+. .+++.
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~  267 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD  267 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC
Confidence            44556666666778999999999999999996 45569999999 9999999999887765  7999999997 45553

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.31  E-value=1.4e-12  Score=82.55  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh-------hHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS-------DSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|..++.++..+ .+|+|+|+++       .+++.++++...++.  +++++++|++++
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ  151 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH
Confidence            356799999999999999999875 4999999999       999999988776655  499999998764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.31  E-value=1e-11  Score=82.80  Aligned_cols=60  Identities=23%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.+++.++..+. .|+++|+|+.+++.+++++..++....+.++|+.++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~  273 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT  273 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH
Confidence            478999999999999999998766 599999999999999999988877556778887654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.30  E-value=7.2e-12  Score=77.01  Aligned_cols=56  Identities=23%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++     .++.+.++|+.++
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~  106 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQL  106 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----cccccchhhHHhh
Confidence            4678999999999999999998744 999999999999999987     2567888887766

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.30  E-value=2.3e-11  Score=80.20  Aligned_cols=72  Identities=19%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ..++..+...++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++....+.  +++++++|+.+ +++
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  246 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP  246 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC
Confidence            34445555557789999999999999999964 4569999999 9999999999887665  79999999875 444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.30  E-value=9.8e-12  Score=79.49  Aligned_cols=46  Identities=13%  Similarity=0.086  Sum_probs=37.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .++.+|||+|||+|.....++.....+|+|+|+|+.|++.|+++..
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            3678999999999996554544445699999999999999988654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.30  E-value=9.1e-12  Score=77.03  Aligned_cols=62  Identities=21%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.  +++++++|+.+.
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~  133 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET  133 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH
Confidence            36789999999999999999964 3 56999999999999999999887765  799999998543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.30  E-value=2.7e-11  Score=75.61  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ...++..+...   .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...+.  +++++++|+.+.
T Consensus        58 ~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~  134 (237)
T 3c3y_A           58 AGQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA  134 (237)
T ss_dssp             HHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            34444444433   36779999999999999999964 3 46999999999999999999988776  699999998653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.30  E-value=5e-12  Score=78.80  Aligned_cols=58  Identities=22%  Similarity=0.406  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC--cccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL--EWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~--~~~~  112 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++       +.++++|+.++  ++++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~~   99 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLPD   99 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSCT
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcCC
Confidence            3568999999999999999987755 899999999999999876       56777887665  5443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.29  E-value=2e-11  Score=79.95  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             HHHHhcCCCC-CCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc--ccC
Q 033605           39 TAENSFGDVS-NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE--WRG  112 (115)
Q Consensus        39 ~~~~~~~~~~-~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~--~~~  112 (115)
                      .++..+...+ +.+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++....+.  +++++.+|+.+.+  +++
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            4445555455 78999999999999999996 45579999999 8899999999887776  6999999998876  554

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.29  E-value=2.3e-12  Score=80.50  Aligned_cols=57  Identities=25%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-----CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|..+..+++.     +..+|+|+|+++.+++.|+.    ...+++++++|+.+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDL  142 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhH
Confidence            5679999999999999999865     35699999999999988872    123799999999884

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.29  E-value=4.2e-12  Score=75.20  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d  104 (115)
                      ...++.+|||+|||+|.++..+++... +++|+|+++.+++.++++.    .+++++++|
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~v~~~~~d   68 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF----DSVITLSDP   68 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC----TTSEEESSG
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC----CCcEEEeCC
Confidence            344778999999999999999997655 9999999999999999882    278888888

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.29  E-value=5e-12  Score=79.66  Aligned_cols=68  Identities=21%  Similarity=0.211  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      ..+.+|||||||+|-++..++.. +...|+++|+++.+++.++.++..++.+..+...|...-+++..|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~  199 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPA  199 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCc
Confidence            35789999999999999998864 678999999999999999999999888889999998877776654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.29  E-value=6.5e-12  Score=83.40  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..++. +++++++|+.++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~  269 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL  269 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH
Confidence            6779999999999999999977 66999999999999999999998887 799999998765

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.28  E-value=5.1e-12  Score=78.79  Aligned_cols=55  Identities=22%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           38 YTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        38 ~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      ..++..+.. .++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.++++..
T Consensus        26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT
T ss_pred             HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc
Confidence            334444443 3567999999999999999998866799999999999999877544

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.28  E-value=9e-12  Score=78.37  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC----------------------------
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----------------------------   96 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------------------   96 (115)
                      +..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            3456789999999999999998876556999999999999999998765431                            


Q ss_pred             --ce-eEEEccccCCcc
Q 033605           97 --DI-DFVQCDIRNLEW  110 (115)
Q Consensus        97 --~v-~~~~~d~~~~~~  110 (115)
                        ++ .++++|+.+.+.
T Consensus       133 ~~~v~~~~~~d~~~~~~  149 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQP  149 (265)
T ss_dssp             HHHEEEEEECCTTSSST
T ss_pred             hhhheeEEEeeeccCCC
Confidence              27 899999988653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.28  E-value=4.5e-11  Score=78.52  Aligned_cols=68  Identities=19%  Similarity=0.255  Sum_probs=56.7

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .+++.+...++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++....+.  +++++.+|+.+
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  244 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE  244 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            3445555567789999999999999999864 4569999999 9999999999887665  79999999875

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.28  E-value=4.9e-11  Score=76.01  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCC---ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           36 MLYTAENSFG-DVSNKVVADFGCGC---GTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        36 ~~~~~~~~~~-~~~~~~vLDlG~G~---G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+..++..+. .....+|||||||+   |.++..+.+ .+..+|+++|+|+.|++.++++....+ +++++++|+.+.
T Consensus        64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~-~v~~~~~D~~~~  140 (274)
T 2qe6_A           64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDP-NTAVFTADVRDP  140 (274)
T ss_dssp             HHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCT-TEEEEECCTTCH
T ss_pred             HHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCC-CeEEEEeeCCCc
Confidence            3344444333 22447999999999   988766665 345699999999999999999885432 799999999763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.27  E-value=2.5e-11  Score=86.03  Aligned_cols=60  Identities=23%  Similarity=0.183  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++++..++.   +++++++|+.+
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~  601 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA  601 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence            6789999999999999999987777899999999999999999988775   59999999876

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.27  E-value=1.7e-11  Score=79.48  Aligned_cols=61  Identities=15%  Similarity=0.138  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ++.+|||||||+|.++..+++ ++..+++++|+++.+++.|++++..... +++++.+|+.++
T Consensus        89 ~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~  151 (317)
T 3gjy_A           89 SKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMV  151 (317)
T ss_dssp             GGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHH
T ss_pred             CCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHH
Confidence            345999999999999999997 5566999999999999999999865433 899999998654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.27  E-value=4e-11  Score=77.63  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      ...++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...+. +++++++|+.+++.
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~  167 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  167 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence            4457889999999999999999963  446999999999999999999998887 89999999987653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.26  E-value=2.8e-11  Score=78.79  Aligned_cols=74  Identities=20%  Similarity=0.233  Sum_probs=58.3

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ...+...++... .+|||+|||+|..+..+++. +..+++++|+ +.+++.++++....+.  +++++.+|+.+ +++..
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  233 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN  233 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence            344555554445 89999999999999999864 4569999999 9999999998765543  79999999977 55543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.25  E-value=2e-11  Score=75.99  Aligned_cols=72  Identities=19%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ....+..+...   .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...+.  +++++++|+.+
T Consensus        60 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~  135 (232)
T 3cbg_A           60 QAQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA  135 (232)
T ss_dssp             HHHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34444444432   25679999999999999999964 3 46999999999999999999887766  69999999754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.24  E-value=2.8e-11  Score=82.47  Aligned_cols=62  Identities=11%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ++.+|||+|||+|..+..+++.  +...|+++|+++.+++.+++++...+. +++++++|+.+++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG  181 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence            7789999999999999999964  246999999999999999999998887 8999999998765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.24  E-value=1.4e-11  Score=83.40  Aligned_cols=65  Identities=14%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ...++.+|||+|||+|..+..+++.  +...|+++|+++.+++.+++++...+. ++.++++|+.+++
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~  169 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV  169 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh
Confidence            4457889999999999999999863  346999999999999999999999888 8999999987664

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.24  E-value=4e-11  Score=78.06  Aligned_cols=65  Identities=18%  Similarity=0.057  Sum_probs=54.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      +..+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++....+.  +++++.+|+. .+++
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p  233 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLP  233 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCC
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCC
Confidence            334567999999999999999986 45669999999 9999999999887765  7999999996 3444

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.24  E-value=5.7e-11  Score=80.42  Aligned_cols=67  Identities=13%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      .+...++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.++++....+. +++++++|+.+++
T Consensus       254 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~  323 (450)
T 2yxl_A          254 VLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP  323 (450)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS
T ss_pred             hcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc
Confidence            334557789999999999999999964 33 6999999999999999999998887 8999999998876

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.24  E-value=1.5e-11  Score=83.31  Aligned_cols=65  Identities=17%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ...++.+|||+|||+|..+..+++.  +...|+++|+++.+++.+++++...+..+.++++|+.+++
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~  164 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALA  164 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh
Confidence            4457889999999999999999964  3369999999999999999999988777889999987665

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.23  E-value=2.6e-11  Score=77.55  Aligned_cols=60  Identities=20%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc------------CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------------ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|++++ ..            ..+++++.+|+.+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~  145 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE  145 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH
Confidence            367899999999999999999776679999999999999999987 32            2379999999754

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.23  E-value=2.9e-11  Score=81.73  Aligned_cols=86  Identities=21%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--------------CCCeEEEEeCChhHHHHHH
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------------GADQVIAIDIDSDSLELAS   88 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--------------~~~~v~~vD~s~~~~~~a~   88 (115)
                      ..++.+|..+...+++.+    ...++.+|||+|||+|.++..+++.              ...+++|+|+++.++..|+
T Consensus       150 ~G~fyTP~~v~~~mv~~l----~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~  225 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS  225 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHh----CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHH
Confidence            345677777665555543    3446779999999999999888753              2358999999999999999


Q ss_pred             HHhhccCC---ceeEEEccccCCcccC
Q 033605           89 ENAADLEL---DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        89 ~~~~~~~~---~v~~~~~d~~~~~~~~  112 (115)
                      .+....+.   ++.++++|....+...
T Consensus       226 ~nl~l~g~~~~~~~i~~gD~l~~~~~~  252 (445)
T 2okc_A          226 MNLYLHGIGTDRSPIVCEDSLEKEPST  252 (445)
T ss_dssp             HHHHHTTCCSSCCSEEECCTTTSCCSS
T ss_pred             HHHHHhCCCcCCCCEeeCCCCCCcccC
Confidence            98876665   6789999988766543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.22  E-value=3.7e-11  Score=76.61  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc----c-CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD----L-ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++..    . ..+++++.+|+.+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~  140 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM  140 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence            36789999999999999999976 567999999999999999998743    2 2279999999765

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.22  E-value=5.6e-11  Score=78.87  Aligned_cols=61  Identities=28%  Similarity=0.218  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc---------------CC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL---------------EL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~-~v~~~~~d~~~~  108 (115)
                      ++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|+..+               +. +++++++|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            6789999999999999999975 5668999999999999999999887               66 599999998654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.21  E-value=1.2e-10  Score=70.55  Aligned_cols=62  Identities=21%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           37 LYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        37 ~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +..+.+.+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++...          ..+++++++|+.+.+
T Consensus        13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~----------~~~v~~~~~D~~~~~   75 (191)
T 3dou_A           13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE----------IAGVRFIRCDIFKET   75 (191)
T ss_dssp             HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC----------CTTCEEEECCTTSSS
T ss_pred             HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc----------CCCeEEEEccccCHH
Confidence            3344444443 46789999999999999999977 56999999998520          117899999988765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.20  E-value=9.3e-11  Score=78.92  Aligned_cols=68  Identities=21%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..+...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++....+.+++++++|+.+++
T Consensus       240 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~  308 (429)
T 1sqg_A          240 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS  308 (429)
T ss_dssp             HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH
T ss_pred             HHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhch
Confidence            33345578899999999999999999753 369999999999999999999988888899999998765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.19  E-value=4.4e-11  Score=78.19  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...     ..+++++++|+.++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~  186 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF  186 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH
Confidence            46789999999999999999976 3569999999999999999987642     23799999998654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.19  E-value=6.1e-12  Score=80.30  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh---ccCCceeEE--EccccCCc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA---DLELDIDFV--QCDIRNLE  109 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~v~~~--~~d~~~~~  109 (115)
                      +..+.+.....++.+|||+|||+|.++..+++.  .+|+|+|+++ |+..+++...   ..+.++.++  ++|+.+++
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  145 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME  145 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence            344444433446789999999999999999977  5999999999 5433322111   111268899  99998876

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.19  E-value=3.6e-11  Score=77.13  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=42.6

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           37 LYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        37 ~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +..++..+.. .++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.+.+
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            3344455444 3567999999999999999998877799999999999988544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.19  E-value=1e-10  Score=71.96  Aligned_cols=65  Identities=29%  Similarity=0.383  Sum_probs=51.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC--Cccc
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN--LEWR  111 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~--~~~~  111 (115)
                      .+.+.+. .++.+|||+|||+|..+..+++.+ .+++|+|+++.+++.++++..      .++++|+.+  .+++
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~   90 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDMPYE   90 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS------EEEESCTTTCCCCSC
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC------cEEEcchhhcCCCCC
Confidence            3344433 477899999999999999999775 699999999999999987653      678888876  4444

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.19  E-value=5.8e-11  Score=77.24  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=52.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...     ..+++++++|+.+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~  181 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK  181 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH
Confidence            35689999999999999999976 4579999999999999999997652     2379999999765

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.18  E-value=5.5e-11  Score=76.56  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc----c-CCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD----L-ELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++..    . ..+++++++|+.+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~  155 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE  155 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence            5689999999999999999976 557999999999999999998743    2 2379999999765

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.18  E-value=6.1e-11  Score=76.60  Aligned_cols=63  Identities=16%  Similarity=0.113  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc----c-CCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD----L-ELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++..    . ..+++++.+|+.+++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~  162 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH
Confidence            46789999999999999999976 456999999999999999998732    1 227999999987764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.17  E-value=8.8e-12  Score=79.14  Aligned_cols=70  Identities=21%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh---hccCCceeEE--EccccCCc
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA---ADLELDIDFV--QCDIRNLE  109 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~v~~~--~~d~~~~~  109 (115)
                      +..+.+.....++.+|||+|||+|.++..+++.  .+|+|+|+++ |+..+++..   ...+.++.++  ++|+.+++
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  137 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP  137 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence            344444433446789999999999999999877  5899999999 533222111   1112268899  99998876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.17  E-value=5.4e-11  Score=77.15  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc-----c-CCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-----L-ELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~-~~~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++..     . ..+++++.+|+.++
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~  144 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY  144 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH
Confidence            36689999999999999999976 456999999999999999998754     2 23899999998663

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.17  E-value=5.6e-11  Score=79.44  Aligned_cols=81  Identities=20%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             cccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCce
Q 033605           21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDI   98 (115)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v   98 (115)
                      ....++.++......+++.+    ...++.+|||+|||+|.++..+++.  ...+++|+|+++.+++.|        .++
T Consensus        16 ~~~g~~~TP~~l~~~~~~~~----~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~   83 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSLA----EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWA   83 (421)
T ss_dssp             -----CCCCHHHHHHHHHHC----CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTE
T ss_pred             ccCceEeCCHHHHHHHHHhh----ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCC
Confidence            34556788877766666543    3335679999999999999999864  456999999999999877        268


Q ss_pred             eEEEccccCCcccCC
Q 033605           99 DFVQCDIRNLEWRGK  113 (115)
Q Consensus        99 ~~~~~d~~~~~~~~~  113 (115)
                      +++++|+.+++..++
T Consensus        84 ~~~~~D~~~~~~~~~   98 (421)
T 2ih2_A           84 EGILADFLLWEPGEA   98 (421)
T ss_dssp             EEEESCGGGCCCSSC
T ss_pred             cEEeCChhhcCccCC
Confidence            899999987764433

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.17  E-value=6.9e-11  Score=76.38  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc----c-CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD----L-ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++..    . ..+++++.+|+.+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~  160 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE  160 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence            46789999999999999999976 357999999999999999998754    1 2379999999865

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.17  E-value=1.9e-10  Score=70.71  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      +.+|||+|||+|.++..++..     +|+|+|+.+++.++++      +++++++|+.++++++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~  100 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKD  100 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCC
Confidence            789999999999999988654     9999999999999887      5789999999888764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.16  E-value=5.5e-11  Score=79.13  Aligned_cols=61  Identities=20%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-c--eeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--v~~~~~d~~~~  108 (115)
                      ++.+|||++||+|.+++.++..  ++.+|+++|+++.+++.+++|+..++. +  ++++++|+.++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~  117 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF  117 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH
Confidence            5789999999999999999974  446999999999999999999999887 4  99999998553

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.16  E-value=7e-11  Score=76.65  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~  107 (115)
                      ++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...     ..+++++.+|+.+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~  173 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE  173 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH
Confidence            5679999999999999999976 4579999999999999999998653     2379999999865

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.14  E-value=1.2e-10  Score=74.56  Aligned_cols=62  Identities=15%  Similarity=0.168  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++...     ..+++++.+|+.++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~  144 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF  144 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH
Confidence            467899999999999999999763 579999999999999999987653     23799999998653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.14  E-value=3.8e-10  Score=80.01  Aligned_cols=80  Identities=24%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC----------------------------------------
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG----------------------------------------   70 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~----------------------------------------   70 (115)
                      ...+.+...++......++.+|||++||+|.++++++...                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            3445555555555555567899999999999998887431                                        


Q ss_pred             ---CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           71 ---ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        71 ---~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                         ..+++|+|+++.+++.|+.|+...+.  .+++.++|+.++..
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~  297 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTN  297 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCC
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcc
Confidence               14799999999999999999999888  49999999988743

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.10  E-value=6.3e-10  Score=70.94  Aligned_cols=64  Identities=19%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCCh----HHHHHHhc-C----CCeEEEEeCChhHHHHHHHHhhc-----------------------cC
Q 033605           48 SNKVVADFGCGCGT----LGAAATLL-G----ADQVIAIDIDSDSLELASENAAD-----------------------LE   95 (115)
Q Consensus        48 ~~~~vLDlG~G~G~----~~~~~~~~-~----~~~v~~vD~s~~~~~~a~~~~~~-----------------------~~   95 (115)
                      ++.+|||+|||+|.    +++.+++. +    ..+|+|+|+|+.|++.|++..-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    45555543 3    24899999999999999987410                       01


Q ss_pred             ---------CceeEEEccccCCccc
Q 033605           96 ---------LDIDFVQCDIRNLEWR  111 (115)
Q Consensus        96 ---------~~v~~~~~d~~~~~~~  111 (115)
                               .+|.|.++|+.+.|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~  209 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN  209 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC
T ss_pred             ceeechhhcccCeEEecccCCCCCC
Confidence                     1589999999886554

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.10  E-value=4.5e-10  Score=71.44  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             HHHHHHHHhcCC-CCCCeEEEEcCCC--ChHHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           35 RMLYTAENSFGD-VSNKVVADFGCGC--GTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        35 ~~~~~~~~~~~~-~~~~~vLDlG~G~--G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ..+..++..+.. .....|||||||+  +.++..+++  .+..+|+++|.|+.|+..|++++...+. +++++++|+.+.
T Consensus        64 ~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           64 DWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             HHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            344444444332 2336899999997  444555553  3567999999999999999999876543 799999999875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.09  E-value=8.6e-11  Score=74.47  Aligned_cols=62  Identities=8%  Similarity=-0.150  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~  109 (115)
                      ..+.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|++++...     ..+++++.+|+.++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH
Confidence            356899999999999999999776 89999999999999999876431     227899999987653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.08  E-value=1.6e-10  Score=73.96  Aligned_cols=63  Identities=11%  Similarity=0.153  Sum_probs=44.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----h-cCCCeE--EEEeCChhHHHHHHHHhhcc-CC-c--eeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----L-LGADQV--IAIDIDSDSLELASENAADL-EL-D--IDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~-~~~~~v--~~vD~s~~~~~~a~~~~~~~-~~-~--v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|.++..++    . .+...+  +|+|+|+.|++.++++.... +. +  +.+.++++++++
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~  124 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQ  124 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhh
Confidence            356799999999998765433    2 234444  99999999999999987653 22 4  445566666543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.07  E-value=6.6e-10  Score=67.32  Aligned_cols=53  Identities=23%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-C--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .++.+|||+|||+|.++..+++. +  ..+|+|+|+|+.+         . ..+++++++|+.+.+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-IPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-CTTCEEEECCTTTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-CCCceEEEccccchh
Confidence            46679999999999999999964 4  4699999999942         0 116899999998776

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.07  E-value=4.1e-10  Score=75.34  Aligned_cols=57  Identities=12%  Similarity=0.125  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .....+.++..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++
T Consensus        92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc
Confidence            345566666666666788999999999999999998755 999999999999999876

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.06  E-value=1.4e-09  Score=71.50  Aligned_cols=74  Identities=19%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ..++..+......+|+|+|||+|.++..+++ ++..+++..|. |.+++.++++....+. +|+++.+|+.+.|+++
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~  244 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE  244 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCC
Confidence            3445555555677999999999999999995 56678899997 7899999998776554 8999999998766553

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.05  E-value=3.5e-10  Score=66.80  Aligned_cols=60  Identities=23%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             HHHhcC-CCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           40 AENSFG-DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        40 ~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +...+. ..++.+|||+|||+|.++..+++. + ..+++|+|+++ ++..         .+++++++|+.+.+
T Consensus        13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~   75 (180)
T 1ej0_A           13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDEL   75 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHH
T ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccch
Confidence            333433 456779999999999999999865 3 36999999999 6532         26889999998765

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=99.05  E-value=8.4e-10  Score=70.22  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.+++.+...++.++||.+||.|..+..+++. ..+|+|+|.++.+++.+++ ...  .+++++++++.+++
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~   79 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLK   79 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHH
Confidence            34444445557889999999999999999977 4599999999999999998 654  38999999998764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.04  E-value=1.7e-10  Score=72.95  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=50.8

Q ss_pred             HHHhcCCCCC--CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh-------ccC-C--ceeEEEccccC
Q 033605           40 AENSFGDVSN--KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------DLE-L--DIDFVQCDIRN  107 (115)
Q Consensus        40 ~~~~~~~~~~--~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~-~--~v~~~~~d~~~  107 (115)
                      +.+.....++  .+|||+|||+|..++.++..+. +|+++|+++.++..++.+..       ..+ .  +++++++|+.+
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~  156 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence            3344444455  7999999999999999998755 89999999987666655533       222 2  68999999876


Q ss_pred             C
Q 033605          108 L  108 (115)
Q Consensus       108 ~  108 (115)
                      +
T Consensus       157 ~  157 (258)
T 2oyr_A          157 A  157 (258)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.03  E-value=6e-10  Score=73.63  Aligned_cols=68  Identities=12%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           37 LYTAENSFG-DVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        37 ~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ...++..++ .....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++.     .+++++.+|+.+ +++
T Consensus       191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~p  260 (368)
T 3reo_A          191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-GVP  260 (368)
T ss_dssp             HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-CCC
Confidence            344555554 44568999999999999999986 55679999999 8888776532     279999999876 555

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=99.02  E-value=1.8e-09  Score=69.54  Aligned_cols=59  Identities=24%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ..+++.++.... .++.+|||++||+|..+..+++.+. +++|+|+++.+++.|++++...
T Consensus       222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            345555555544 4788999999999999999988765 9999999999999999998764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.02  E-value=6e-10  Score=77.95  Aligned_cols=65  Identities=22%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH---hcCCC--eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT---LLGAD--QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~---~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|-++...+   +.+..  +|++||.|+ +...+++....++.  +|+++++|++++.+|++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEK  428 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEK  428 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcc
Confidence            44689999999999855544   33332  789999998 66677887777776  89999999999999875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.02  E-value=9.3e-10  Score=72.63  Aligned_cols=68  Identities=16%  Similarity=0.106  Sum_probs=52.8

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           37 LYTAENSFG-DVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        37 ~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ...++..++ ..+..+|||+|||+|..+..+++ ++..+++++|+ +.+++.+++.     .+++++.+|+.+ |++
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p  258 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-EVP  258 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-CCC
Confidence            344555555 45668999999999999999985 55679999999 8888766532     279999999987 655

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.02  E-value=2.8e-09  Score=73.65  Aligned_cols=88  Identities=16%  Similarity=0.063  Sum_probs=69.5

Q ss_pred             cccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----CCCeEEEEeCChhHHHHHHHHhhccCC
Q 033605           21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLEL   96 (115)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~   96 (115)
                      ....+|.+|..+...+++.+.......++.+|+|++||+|.+...+++.    +...++|+|+++.++..|+.+....+.
T Consensus       194 k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  273 (542)
T 3lkd_A          194 KKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV  273 (542)
T ss_dssp             -CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC
Confidence            3456688999988888887764322346779999999999998888754    246899999999999999998876665


Q ss_pred             ---ceeEEEccccCC
Q 033605           97 ---DIDFVQCDIRNL  108 (115)
Q Consensus        97 ---~v~~~~~d~~~~  108 (115)
                         ++.+.++|....
T Consensus       274 ~~~~~~I~~gDtL~~  288 (542)
T 3lkd_A          274 PIENQFLHNADTLDE  288 (542)
T ss_dssp             CGGGEEEEESCTTTS
T ss_pred             CcCccceEecceecc
Confidence               578999998765

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.99  E-value=4.8e-10  Score=74.66  Aligned_cols=67  Identities=21%  Similarity=0.164  Sum_probs=49.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCC------CChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCG------CGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G------~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ..+.++..+. .++.+|||||||      +|..++.+++ . +..+|+|+|+|+.|.        ....+++++++|+.+
T Consensus       205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~d  275 (419)
T 3sso_A          205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQND  275 (419)
T ss_dssp             HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTC
T ss_pred             HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccc
Confidence            3444444433 367899999999      7777777764 3 567999999999983        122389999999999


Q ss_pred             Cccc
Q 033605          108 LEWR  111 (115)
Q Consensus       108 ~~~~  111 (115)
                      +++.
T Consensus       276 lpf~  279 (419)
T 3sso_A          276 AEFL  279 (419)
T ss_dssp             HHHH
T ss_pred             cchh
Confidence            8765

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.97  E-value=3.4e-09  Score=69.69  Aligned_cols=60  Identities=13%  Similarity=0.046  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ++..|||+|+|.|.+|..+++. .+.+|+++|+++..+...++.. .. .+++++++|+.+++
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~-~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG-SPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT-SSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC-CCEEEEECCccchh
Confidence            3589999999999999999964 4569999999999999998876 32 38999999997764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.96  E-value=1.5e-09  Score=71.20  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=48.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      ..++..+...++.+|||+|||+|..+..+++ .+..+++++|++ .++.  +++....+.  +++++.+|+.
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~  242 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL  242 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC
Confidence            3455666666778999999999999999986 455689999994 4544  333332222  7999999995

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.95  E-value=2e-09  Score=71.10  Aligned_cols=68  Identities=16%  Similarity=0.051  Sum_probs=52.5

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           38 YTAENSFG-DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        38 ~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ..++..++ ..++.+|||+|||+|..+..+++. +..+++++|+ +.+++.+++.     .+++++.+|+.+ +++.
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCCC
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-CCCC
Confidence            45555554 456789999999999999999964 4568999999 8888776542     269999999977 6553

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.95  E-value=3.4e-09  Score=63.87  Aligned_cols=53  Identities=21%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CC---------CeEEEEeCChhHHHHHHHHhhccCCceeEE-EccccCC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GA---------DQVIAIDIDSDSLELASENAADLELDIDFV-QCDIRNL  108 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~---------~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~-~~d~~~~  108 (115)
                      ..++.+|||+|||+|.++..+++. +.         .+|+|+|+|+.+.         . .+++++ ++|+.+.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~---------~-~~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP---------L-EGATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC---------C-TTCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc---------C-CCCeEEEeccCCCH
Confidence            346789999999999999999965 43         6999999999520         0 157778 7777654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.92  E-value=1.6e-09  Score=71.11  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      .++.+|||+|||+|..+..+++ .+..+++++|+ +.+++.+++.    . +++++.+|+.+ +++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~d~~~-~~p  245 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----N-NLTYVGGDMFT-SIP  245 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----T-TEEEEECCTTT-CCC
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----C-CcEEEeccccC-CCC
Confidence            3567999999999999999996 45569999999 9998877642    2 59999999966 554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.91  E-value=2.9e-09  Score=73.61  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----C---------------CCeEEEEeCChhH
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G---------------ADQVIAIDIDSDS   83 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~---------------~~~v~~vD~s~~~   83 (115)
                      ..++.+|..+...+++.+    ...++.+|+|+|||+|.+...+++.    .               ...++|+|+++.+
T Consensus       148 ~G~fyTP~~iv~~mv~~l----~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~  223 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT  223 (541)
T ss_dssp             --CCCCCHHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred             CCeeeCCHHHHHHHHHHh----ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHH
Confidence            445777777666555443    3446779999999999998887742    1               1379999999999


Q ss_pred             HHHHHHHhhccCC-c-----eeEEEccccCCc
Q 033605           84 LELASENAADLEL-D-----IDFVQCDIRNLE  109 (115)
Q Consensus        84 ~~~a~~~~~~~~~-~-----v~~~~~d~~~~~  109 (115)
                      +..|+.++...+. +     +.++++|....+
T Consensus       224 ~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~  255 (541)
T 2ar0_A          224 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD  255 (541)
T ss_dssp             HHHHHHHHHTTTCCCBGGGTBSEEESCTTSHH
T ss_pred             HHHHHHHHHHhCCCccccccCCeEeCCCcccc
Confidence            9999998876665 3     789999976543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.88  E-value=1.6e-09  Score=70.06  Aligned_cols=66  Identities=15%  Similarity=0.089  Sum_probs=45.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeC----ChhHHHHHHHHhhccCC-ceeEEEc-cccCCc
Q 033605           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI----DSDSLELASENAADLEL-DIDFVQC-DIRNLE  109 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~----s~~~~~~a~~~~~~~~~-~v~~~~~-d~~~~~  109 (115)
                      +.+.....++.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++...  ....+. +++++++ |+..++
T Consensus        74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~  145 (305)
T 2p41_A           74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP  145 (305)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC
T ss_pred             HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC
Confidence            344322345689999999999999999977  48999999    554432111  111112 6899999 888765

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.88  E-value=2.7e-09  Score=65.28  Aligned_cols=48  Identities=31%  Similarity=0.517  Sum_probs=40.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|.++..++    .+++|+|+|+.              ++.++++|+.++++++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~  113 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVPLED  113 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCSCCT
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCCCCC
Confidence            466899999999999988773    58999999998              4578889998887754

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.88  E-value=9.6e-09  Score=59.35  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCC-hHHHHHHhcCCCeEEEEeCChhHHH
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCG-TLGAAATLLGADQVIAIDIDSDSLE   85 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G-~~~~~~~~~~~~~v~~vD~s~~~~~   85 (115)
                      ....+.+.+.+.+.+.  .+.+|||+|||.| ..+..+++.....|+++|+++.++.
T Consensus        19 ~~m~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           19 SHMWNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CHHHHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             hhHHHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            3445566666665543  5679999999999 6999999733448999999998776

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.80  E-value=2.8e-08  Score=62.79  Aligned_cols=60  Identities=23%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      ..+++.++.... .++..|||++||+|..+..+.+.+. +++|+|+++.+++.+++++...+
T Consensus       199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence            345555555443 4788999999999999999988765 99999999999999999987654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.79  E-value=1.6e-08  Score=64.92  Aligned_cols=56  Identities=25%  Similarity=0.284  Sum_probs=40.6

Q ss_pred             CCCCCCeEEEEcCCC------ChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhhccCCceeE-EEccccCCcccCCC
Q 033605           45 GDVSNKVVADFGCGC------GTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLELDIDF-VQCDIRNLEWRGKY  114 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~------G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~-~~~d~~~~~~~~~f  114 (115)
                      ...++.+|||+|||+      |.  ..+++ .+ ..+|+|+|+|+.        .    .++++ +++|+.++++++.|
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~~~~~f  124 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVHTANKW  124 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCCCSSCE
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCCccCcc
Confidence            445778999999955      55  33443 34 369999999998        1    16788 99999988765443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.72  E-value=1.5e-07  Score=67.55  Aligned_cols=88  Identities=18%  Similarity=0.107  Sum_probs=61.4

Q ss_pred             ccccccCCCchhhHHHHHHHHHHhc--CCCCCCeEEEEcCCCChHHHHHHhcC----CCeEEEEeCChhHHHHH--HHHh
Q 033605           20 KVELEQYPTGPHIASRMLYTAENSF--GDVSNKVVADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELA--SENA   91 (115)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLDlG~G~G~~~~~~~~~~----~~~v~~vD~s~~~~~~a--~~~~   91 (115)
                      ......+.++..+...++..+....  ...++.+|||+|||+|.+...+++..    ..+++|+|+++.++..|  +.+.
T Consensus       291 Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL  370 (878)
T 3s1s_A          291 RGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGL  370 (878)
T ss_dssp             CCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHT
T ss_pred             CCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHH
Confidence            3345668899998888877632222  22357799999999999999988642    35899999999999999  5554


Q ss_pred             hc----cCC-ceeEEEccccC
Q 033605           92 AD----LEL-DIDFVQCDIRN  107 (115)
Q Consensus        92 ~~----~~~-~v~~~~~d~~~  107 (115)
                      ..    .+. ...+...|+..
T Consensus       371 ~lN~LlhGi~~~~I~~dD~L~  391 (878)
T 3s1s_A          371 LFPQLVSSNNAPTITGEDVCS  391 (878)
T ss_dssp             TSTTTCBTTBCCEEECCCGGG
T ss_pred             HHhhhhcCCCcceEEecchhc
Confidence            43    222 23555566654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.72  E-value=1.5e-08  Score=66.66  Aligned_cols=57  Identities=14%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ...+|||+|||+|.++..+++. +..+++++|+ +.+++.+++    . .+++++.+|+.+ +++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~d~~~-~~~  250 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N-ENLNFVGGDMFK-SIP  250 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C-SSEEEEECCTTT-CCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C-CCcEEEeCccCC-CCC
Confidence            5679999999999999999964 4568999999 788876653    1 169999999987 655

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.71  E-value=2.3e-07  Score=56.61  Aligned_cols=58  Identities=19%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~  107 (115)
                      +.++|||+||  |+.++.+++....+|+++|.+++..+.+++++...+.    +++++.+|+.+
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            5679999998  5788888875356999999999999999999998773    79999999754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.68  E-value=4.3e-08  Score=69.24  Aligned_cols=61  Identities=13%  Similarity=0.231  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCChHHHHHH---h-cC----------CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           49 NKVVADFGCGCGTLGAAAT---L-LG----------ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~---~-~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      +.+|||+|||+|-++...+   + .+          ..+|++||.++.++..++.... ++.  .|+++++|++++.+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccc
Confidence            4689999999999975432   2 12          3499999999987766665544 343  79999999999987

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.66  E-value=2e-08  Score=69.48  Aligned_cols=83  Identities=17%  Similarity=0.083  Sum_probs=61.9

Q ss_pred             ccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--------C--------CCeEEEEeCChhHHH
Q 033605           22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------G--------ADQVIAIDIDSDSLE   85 (115)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--------~--------~~~v~~vD~s~~~~~   85 (115)
                      ...+|.+|..+...+++.+.    . .+.+|+|++||+|.+...+++.        .        ...++|+|+++.++.
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll~----p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~  297 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEMLE----P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWK  297 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHHC----C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHH
T ss_pred             cCCeEeCCHHHHHHHHHHHh----c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHH
Confidence            44568888888877777652    2 3349999999999998876532        0        348999999999999


Q ss_pred             HHHHHhhccCC--ceeEEEccccCCc
Q 033605           86 LASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        86 ~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      .|+.++...+.  ++.+.++|....+
T Consensus       298 lA~~Nl~l~gi~~~i~i~~gDtL~~~  323 (544)
T 3khk_A          298 LAAMNMVIRGIDFNFGKKNADSFLDD  323 (544)
T ss_dssp             HHHHHHHHTTCCCBCCSSSCCTTTSC
T ss_pred             HHHHHHHHhCCCcccceeccchhcCc
Confidence            99999877666  4444788866544

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.63  E-value=1e-07  Score=65.79  Aligned_cols=85  Identities=14%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             ccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----C----------CCeEEEEeCChhHHHHH
Q 033605           22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G----------ADQVIAIDIDSDSLELA   87 (115)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~----------~~~v~~vD~s~~~~~~a   87 (115)
                      ...+|.+|.++..-+++.+    ...++.+|+|.+||+|.+...+.++    .          ...++|+|+++.+...|
T Consensus       195 ~~GqfyTP~~Vv~lmv~l~----~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          195 DSGEFYTPRPVVRFMVEVM----DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             SCCCCCCCHHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             cCceECCcHHHHHHHHHhh----ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            4567899998887777654    3346779999999999998776532    1          23699999999999999


Q ss_pred             HHHhhccCC-ceeEEEccccCCcc
Q 033605           88 SENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        88 ~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      +-+..-.+. ...+.++|....|.
T Consensus       271 ~mNl~lhg~~~~~I~~~dtL~~~~  294 (530)
T 3ufb_A          271 QMNLLLHGLEYPRIDPENSLRFPL  294 (530)
T ss_dssp             HHHHHHHTCSCCEEECSCTTCSCG
T ss_pred             HHHHHhcCCccccccccccccCch
Confidence            988776665 56777888766553

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.56  E-value=2.2e-07  Score=60.61  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      -+++.+++.+...++.+++|..||.|..+..+++.  +..+|+|+|.++.+++.++ ++  ...+++++++++.++
T Consensus        44 VLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           44 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSAL  116 (347)
T ss_dssp             TTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGH
T ss_pred             ccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHH
Confidence            35566666666678899999999999999999964  3469999999999999984 43  233899999988765

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.48  E-value=9.6e-07  Score=58.32  Aligned_cols=60  Identities=12%  Similarity=0.016  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ..++.++||+||++|.++..+++.+. .|+|||+.+- -...    ...+ +|+++++|+..+.++.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l-~~~l----~~~~-~V~~~~~d~~~~~~~~  268 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPM-AQSL----MDTG-QVTWLREDGFKFRPTR  268 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCC-CHHH----HTTT-CEEEECSCTTTCCCCS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhc-Chhh----ccCC-CeEEEeCccccccCCC
Confidence            34788999999999999999998865 9999998763 2221    1112 7899999988777654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=98.46  E-value=8.3e-08  Score=62.48  Aligned_cols=71  Identities=11%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+++.++.... .+++.|||..||+|..+....+.+. +.+|+|+++.++..+++++...+.....++.|+.+
T Consensus       240 ~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  310 (323)
T 1boo_A          240 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISEEKITDIYNR  310 (323)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            44444444432 4788999999999999999888765 99999999999999999988766555555555443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.28  E-value=5.9e-06  Score=53.11  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc-----cC-CceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-----LE-LDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~-~~v~~~~~d~~~~  108 (115)
                      .++++||-+|.|.|....+++++ +..+|+.+||++..++.+++.+..     .. .+++++.+|+..+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~  150 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF  150 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH
Confidence            46789999999999999999986 457999999999999999997643     12 2799999997654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.27  E-value=2e-06  Score=56.79  Aligned_cols=65  Identities=15%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC-------ceeEEEccccCCc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLE  109 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~  109 (115)
                      ...++.+|||+++|.|.-+..+++.. ...|+++|+++..+..+++++...+.       ++.+...|...++
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~  217 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG  217 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence            45678899999999999999988653 35899999999999999998876542       6888888887654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.19  E-value=3.1e-06  Score=55.52  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.+++|+.||.|.+++.+.+.+  ...+.++|+++.+++..+.|...    ..++++|+.++.
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~----~~~~~~Di~~~~   60 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGIT   60 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc----cccccCCHHHcc
Confidence            4589999999999999998876  45799999999999999998763    346778877654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.19  E-value=3.2e-06  Score=53.79  Aligned_cols=53  Identities=23%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhH
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDS   83 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~   83 (115)
                      ..+...+..+.+.+...++.+|||||||+|.++..+++ .+...|+|+|++..+
T Consensus        73 SRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~  126 (282)
T 3gcz_A           73 SRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG  126 (282)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             cHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence            33444455555666666778999999999999999885 556789999998653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=98.19  E-value=6.3e-06  Score=53.60  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh---hHHHHHHHHhhccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS---DSLELASENAADLE   95 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~   95 (115)
                      ..+++.++.... .+++.|||..||+|..+....+.+. +.+|+|+++   ..++.+++++...+
T Consensus       229 ~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            344555554433 4788999999999999999888765 999999999   99999999987655

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.14  E-value=5.8e-06  Score=51.47  Aligned_cols=78  Identities=15%  Similarity=0.069  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEc-cccC
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIRN  107 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~-d~~~  107 (115)
                      ......+..+.+.....++.+||||||++|.++..++. .+..+|+|+|+-+.-.+.- .....++. .++|.++ |+..
T Consensus        61 SRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~  139 (267)
T 3p8z_A           61 SRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFY  139 (267)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGG
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceee
Confidence            33445556666666666788999999999999998885 5667999999887543110 01123344 5888888 8654


Q ss_pred             Cc
Q 033605          108 LE  109 (115)
Q Consensus       108 ~~  109 (115)
                      ++
T Consensus       140 ~~  141 (267)
T 3p8z_A          140 LP  141 (267)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.13  E-value=8.7e-06  Score=54.07  Aligned_cols=56  Identities=29%  Similarity=0.302  Sum_probs=47.6

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+++|+.||.|.++..+.+.+...+.++|+++.+++..+.|..    +..++++|+.++.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~   58 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLN   58 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC----CCceEecChhhcC
Confidence            5899999999999999988877678899999999999988865    4567788887764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.11  E-value=5e-06  Score=53.27  Aligned_cols=51  Identities=16%  Similarity=0.015  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChh
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSD   82 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~   82 (115)
                      .....+..+.+.....++.+||||||++|.++..++. .+..+|+|+|+...
T Consensus        78 R~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           78 RGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             THHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            3444555666666666788999999999999998885 56678999998876

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.11  E-value=1.1e-06  Score=52.03  Aligned_cols=48  Identities=10%  Similarity=-0.000  Sum_probs=40.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      ...++.+|||+|||.               +++|+|+.|++.|+++...   +++++++|++++++
T Consensus         9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~   56 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQ   56 (176)
T ss_dssp             TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGG
T ss_pred             CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCcc
Confidence            445788999999996               2399999999999998654   48999999999887

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.06  E-value=9.5e-06  Score=51.52  Aligned_cols=51  Identities=20%  Similarity=0.128  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhH
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDS   83 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~   83 (115)
                      +...+..+.+.....++.+|||||||+|.++..++.. +...++|+|++..+
T Consensus        59 aA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl  110 (277)
T 3evf_A           59 GTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG  110 (277)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC
Confidence            3444444555545556779999999999999998864 55688899988543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.00  E-value=1.6e-05  Score=52.81  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-----C----CceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----E----LDIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~----~~v~~~~~d~~  106 (115)
                      ++++||-+|.|.|....++++++..+|+.+||++..++.|++.+...     .    .+++++.+|+.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~  272 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCI  272 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHH
Confidence            56799999999999999999877789999999999999999876431     1    14777777763

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.99  E-value=1.1e-05  Score=50.99  Aligned_cols=60  Identities=23%  Similarity=0.155  Sum_probs=41.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-------CC------CeEEEEeCCh---hHH-----------HHHHHHhhc-------
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-------GA------DQVIAIDIDS---DSL-----------ELASENAAD-------   93 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-------~~------~~v~~vD~s~---~~~-----------~~a~~~~~~-------   93 (115)
                      ++.+|||+|+|+|..++.+++.       ..      .+++++|..|   +.+           ..+++....       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            5579999999999988876532       22      4899999887   333           355555443       


Q ss_pred             -----c--C-CceeEEEccccC
Q 033605           94 -----L--E-LDIDFVQCDIRN  107 (115)
Q Consensus        94 -----~--~-~~v~~~~~d~~~  107 (115)
                           .  + .+++++.+|+.+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~  161 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINE  161 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHH
T ss_pred             hhheeccCCceEEEEEECcHHH
Confidence                 1  2 278899999865

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.95  E-value=3.3e-05  Score=50.40  Aligned_cols=56  Identities=21%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+.+++|+.||.|.++..+.+.+...+.++|+++.+++..+.+.....      ++|+.++.
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~------~~Di~~~~   65 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP------EGDITQVN   65 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC------BSCGGGSC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC------cCCHHHcC
Confidence            357899999999999999988887788999999999999999875421      46655543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.91  E-value=5.9e-05  Score=50.60  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHH-hc-C-CCeEEEEeCChhHHHHHHHHhhc--c--C-CceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAAT-LL-G-ADQVIAIDIDSDSLELASENAAD--L--E-LDIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~-~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~--~-~~v~~~~~d~~  106 (115)
                      .++.+++|+|++.|.++..++ +. + ..+|+++|++|...+.++++...  +  . .++++++.-+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            477899999999999999887 43 3 26999999999999999999876  1  1 26777765443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.90  E-value=8.9e-05  Score=47.46  Aligned_cols=61  Identities=15%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc------CCCeEEEEeCCh--------------------------hHHHHHHHHhhcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDS--------------------------DSLELASENAADL   94 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~------~~~~v~~vD~s~--------------------------~~~~~a~~~~~~~   94 (115)
                      ..+..|||+|+..|..++.++..      ...+|+++|..+                          ..++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            35779999999999999888742      256899999642                          1467788888877


Q ss_pred             CC---ceeEEEccccC
Q 033605           95 EL---DIDFVQCDIRN  107 (115)
Q Consensus        95 ~~---~v~~~~~d~~~  107 (115)
                      +.   +++++.||+.+
T Consensus       185 gl~~~~I~li~Gda~e  200 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKD  200 (282)
T ss_dssp             TCCSTTEEEEESCHHH
T ss_pred             CCCcCceEEEEeCHHH
Confidence            64   79999999854

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.86  E-value=5.7e-05  Score=49.04  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      .+||||.||.|.++.-+.+.+..-+.++|+++.+++..+.|..     -.++.+|+.++..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~DI~~i~~   56 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISS   56 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-----SEEEESCGGGCCG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----CCcccCChhhCCH
Confidence            3799999999999998887777677899999999999988874     3677888877653

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.80  E-value=0.00014  Score=46.81  Aligned_cols=59  Identities=19%  Similarity=0.074  Sum_probs=46.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCe--EEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQ--VIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..+.+++|+.||.|.++..+.+.+...  +.++|+++.+++..+.+..    +..+..+|+.++.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~   74 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVT   74 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHcc
Confidence            356689999999999999888776544  6999999999988887764    2356778887664

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.66  E-value=0.0001  Score=47.26  Aligned_cols=47  Identities=17%  Similarity=0.075  Sum_probs=35.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChh
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSD   82 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~   82 (115)
                      .+..+.+.....++.+||||||++|.++..+++. +...|+|+|+...
T Consensus        69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            3334444433346789999999999999999964 5668999999754

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.60  E-value=0.00018  Score=47.02  Aligned_cols=56  Identities=20%  Similarity=0.307  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           50 KVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+++|+.||.|.++..+.+.+.  .-+.++|+++.+++..+.|...    ..++++|+.++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~DI~~~~   61 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE----TNLLNRNIQQLT   61 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECCCGGGCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC----CceeccccccCC
Confidence            4899999999999998887654  5688999999999999988763    345667776654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.59  E-value=0.0002  Score=46.78  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCC--CeE-EEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGA--DQV-IAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~--~~v-~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ++.+++|+.||.|.++..+.+.+.  ..+ .++|+++.+++..+.|....     ++++|+.++.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-----~~~~DI~~~~   68 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-----VQVKNLDSIS   68 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-----CBCCCTTTCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-----cccCChhhcC
Confidence            456899999999999999887763  456 79999999999999987542     4566766654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.57  E-value=5.6e-05  Score=48.28  Aligned_cols=57  Identities=5%  Similarity=-0.053  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      .+..+||+.+|+|.+++++++. ..+++.+|.++..++..++++... .++++++.|+.
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~~-~~~~V~~~D~~  147 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFN-KKVYVNHTDGV  147 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTT-SCEEEECSCHH
T ss_pred             cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCcC-CcEEEEeCcHH
Confidence            5678999999999999999884 579999999999999999998752 37999999963

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.48  E-value=0.00027  Score=48.41  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..+++|+.||.|.++.-+.+.+..-|.++|+++.+++..+.+....+ +..++++|+.++.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p-~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP-ATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT-TTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC-Ccceeccchhhhh
Confidence            45899999999999999887776668999999999999888863222 3456667776553

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.37  E-value=0.00042  Score=43.71  Aligned_cols=40  Identities=20%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL   69 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~   69 (115)
                      ...+...+.++.++.-..++.+||||||+.|.++..+++.
T Consensus        55 RSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           55 VSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred             ccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhh
Confidence            3344555666666654556889999999999999999865

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.13  E-value=0.0034  Score=41.72  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCCChHHHHHHhc----------------CCCeEEEEeCChhHHHHHHHHhh
Q 033605           49 NKVVADFGCGCGTLGAAATLL----------------GADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      +.+|+|+|||+|.+++.+...                +.-.|+..|+.....+..-+.+.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~  112 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP  112 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence            578999999999999887422                12355556655555544444433

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=96.70  E-value=0.0012  Score=47.60  Aligned_cols=56  Identities=16%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC------CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG------ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +..+||||.||.|.++.-+.+.+      ..-+.++|+++.+++..+.|...    ..+.+.|+.+
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~----~~~~~~di~~  272 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ----TEVRNEKADE  272 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT----SEEEESCHHH
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC----CceecCcHHH
Confidence            45689999999999987776543      34678999999999999888763    4566666543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.66  E-value=0.013  Score=36.92  Aligned_cols=61  Identities=23%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=-|++.|.   .+..+++.+. +|+.+|.+++.++...+.....+.++.++++|+.+.
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~   68 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKK   68 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            478888888877665   3344445544 999999999999888888777777889999998764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.64  E-value=0.0035  Score=46.55  Aligned_cols=54  Identities=20%  Similarity=0.208  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      ...+++||.||.|.++.-+.+.+. .-+.++|+++.+++..+.|...    ..++.+|+
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~----~~~~~~DI  593 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG----STVFTEDC  593 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT----SEEECSCH
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC----CccccccH
Confidence            456899999999999998887775 4678999999999988887652    34444443

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=96.44  E-value=0.04  Score=36.85  Aligned_cols=49  Identities=18%  Similarity=0.123  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--------CCCeEEEEeCChhHHHHHHHHhhc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--------GADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      ..+.+-.|+|+|+|+|.+...+++.        ...+++.||+|+...+.=++.+..
T Consensus        77 g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           77 DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             CCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            3344557999999999998776531        234899999999877655555443

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.02  E-value=0.046  Score=35.79  Aligned_cols=61  Identities=18%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc----------------------CCceeEEEcc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL----------------------ELDIDFVQCD  104 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~----------------------~~~v~~~~~d  104 (115)
                      ....|+.||||.......+... +...++-+|. |+.++.-++.+...                      ..+..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999999988753 4456777777 77776666655443                      1378899999


Q ss_pred             ccCCc
Q 033605          105 IRNLE  109 (115)
Q Consensus       105 ~~~~~  109 (115)
                      +.+.+
T Consensus       176 L~d~~  180 (334)
T 1rjd_A          176 LNDIT  180 (334)
T ss_dssp             TTCHH
T ss_pred             CCCcH
Confidence            88754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.01  E-value=0.039  Score=35.82  Aligned_cols=50  Identities=24%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +......++++||-.|+|. |..+..+++....+|+++|.+++.++.+++.
T Consensus       159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             HHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            3444566888999999874 7777778864445999999999999888763

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.99  E-value=0.017  Score=38.42  Aligned_cols=48  Identities=35%  Similarity=0.331  Sum_probs=37.2

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-+|+|. |.++..+++ .+..+|+++|.+++.++.+++
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            344566788999999874 777777775 454599999999999888764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.84  E-value=0.016  Score=44.39  Aligned_cols=45  Identities=20%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhh
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      +..+++||.||.|.++.-+.+.+. .-+.++|+++.+++..+.|..
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p  895 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP  895 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC
Confidence            456899999999999998887765 468899999999999888764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.83  E-value=0.12  Score=32.23  Aligned_cols=61  Identities=23%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   72 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDD   72 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            367788888876654   3344445544 899999999888877777666666888999998764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.76  E-value=0.067  Score=33.24  Aligned_cols=60  Identities=22%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.+.......+.++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   68 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNE   68 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCH
Confidence            56788888876553   2333444544 999999999888877777766666889999998764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.74  E-value=0.027  Score=37.04  Aligned_cols=49  Identities=31%  Similarity=0.410  Sum_probs=37.4

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +.....++++||-+|+|. |..+..+++ .+...|+++|.+++.++.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            444556788999999874 667777775 4555799999999999888764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.62  E-value=0.037  Score=34.86  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=-|++.|.   .+..+++.+. +|+.+|.+++.++...+.....+.++.++++|+.+.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~   70 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDE   70 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCH
Confidence            67788888876654   2344445554 999999999998887777776666888888888653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.59  E-value=0.042  Score=35.95  Aligned_cols=49  Identities=27%  Similarity=0.262  Sum_probs=36.7

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||-+|+|. |..+..+++. +..+|+++|.+++.++.+++.
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  215 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI  215 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            344566788999999873 6666777754 444999999999988887653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.52  E-value=0.087  Score=34.12  Aligned_cols=58  Identities=19%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC----CceeEEEccccC
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE----LDIDFVQCDIRN  107 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~  107 (115)
                      ..-|++||||.=.....+.......++=+| .|..+...++.+...+    .+..++.+|+.+
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d  164 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  164 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence            346999999988886665432235888899 5888888888876432    278899999876

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.52  E-value=0.11  Score=32.09  Aligned_cols=59  Identities=25%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..    +++.+. +|+.++.+++..+...+.....+.++.++.+|+.+.
T Consensus         8 ~~k~vlITGas~-giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   70 (253)
T 3qiv_A            8 ENKVGIVTGSGG-GIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDP   70 (253)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            567888888654 44444    344444 899999999988877777666555788889988764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.51  E-value=0.11  Score=32.42  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCC----CCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           47 VSNKVVADFGCG----CGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G----~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      .+++++|=-|++    .|. .+..+++.+. +|+.++.+++..+.+.+...+.+. ++.++++|+.+.
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSD   70 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCH
Confidence            378899999853    343 3444556655 999999999988888877776554 788889988653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.49  E-value=0.05  Score=35.44  Aligned_cols=50  Identities=12%  Similarity=0.014  Sum_probs=37.5

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +......++++||-.|+|. |..+..+++....+|+++|.+++..+.+++.
T Consensus       169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  219 (348)
T 3two_A          169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM  219 (348)
T ss_dssp             HHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT
T ss_pred             HHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc
Confidence            3344666888999999863 6666777764445999999999999988763

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=95.44  E-value=0.02  Score=38.47  Aligned_cols=46  Identities=11%  Similarity=-0.072  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcC--CCe----EEEEeCChhHHHHHHHHhhc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLG--ADQ----VIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~--~~~----v~~vD~s~~~~~~a~~~~~~   93 (115)
                      +..+|+|+.||.|.....+.+.+  ..-    |.++|+++.++...+.+...
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            34689999999999988887654  223    78899999999998888764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.43  E-value=0.12  Score=32.93  Aligned_cols=61  Identities=23%  Similarity=0.348  Sum_probs=43.9

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+ .+|+.++.++..++.+.+.....+.++.++.+|+.+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~   92 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHL   92 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence            366788888876543   233344454 4899999999988887777666666889999998764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.42  E-value=0.12  Score=32.14  Aligned_cols=59  Identities=27%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..+    ++.+ .+|+.++.+++.++.+.......+.++.++.+|+.+.
T Consensus         5 ~~k~vlVTGas~-gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   67 (257)
T 3imf_A            5 KEKVVIITGGSS-GMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNT   67 (257)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            566788777654 444443    3444 4899999999988887777766555788999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.41  E-value=0.09  Score=29.62  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             CeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           50 KVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        50 ~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+|+=+|||. |......+.....+|+++|.+++.++.++..      .+.++.+|..+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~------g~~~i~gd~~~   60 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER------GVRAVLGNAAN   60 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEESCTTS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc------CCCEEECCCCC
Confidence            5788888763 3333322222234999999999998877642      35677777654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.41  E-value=0.071  Score=35.13  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=35.9

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           44 FGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l  237 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL  237 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            3556788999999873 6666677764445899999999999888763

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.39  E-value=0.072  Score=35.37  Aligned_cols=47  Identities=32%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             hcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           43 SFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .....++++||-+|+|. |.++..+++. +...|+++|.+++.++.+++
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            34556788999999863 6677777764 44589999999999988865

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.35  E-value=0.025  Score=37.78  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=17.2

Q ss_pred             CCeEEEEcCCCChHHHHHHh
Q 033605           49 NKVVADFGCGCGTLGAAATL   68 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~   68 (115)
                      ..+|+|+||++|..++.+..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~   72 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVR   72 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHH
Confidence            57899999999999887763

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.30  E-value=0.21  Score=31.03  Aligned_cols=60  Identities=32%  Similarity=0.427  Sum_probs=42.9

Q ss_pred             CCCeEEEEcC-CCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGC-GCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~-G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ |.|.   ++..+++.+. +|+.++.++...+...+.....+. ++.++.+|+.+.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~   85 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTST   85 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence            6678888887 4443   3344455554 899999999888777776655443 789999998764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.29  E-value=0.17  Score=32.07  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.........+.++.++.+|+.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~   89 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDE   89 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            56788888866543   2333444544 999999999888877777665555788899988764

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=95.25  E-value=0.042  Score=37.24  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=44.2

Q ss_pred             cccCCCchhhHHH----HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh----cC--CCeEEEEeCChhHHHHHHHHhh
Q 033605           23 LEQYPTGPHIASR----MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL----LG--ADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        23 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~----~~--~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      -.+|.+.++.+.-    +..++.+......+.+|+|+|+|+|.+...+++    .+  ..+++.||+|+...+.=++.+.
T Consensus       108 ~GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          108 GSDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             --CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            3467777766432    222222222211256999999999998777653    12  3489999999988866666554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.25  E-value=0.15  Score=32.17  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~   85 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTST   85 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            56688888865543   233344454 4899999999888777776666666888999998764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=95.24  E-value=0.15  Score=31.70  Aligned_cols=60  Identities=17%  Similarity=0.267  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++..+...+.....+.++.++.+|+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   73 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDE   73 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            56788877766543   2333445555 899999999888777776666566888899998764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.22  E-value=0.12  Score=32.20  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=43.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++ |.++..++    +.+ .+|+.++-++..++...+.....+.++.++.+|+.+.
T Consensus        27 l~~k~vlITGas-~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   90 (262)
T 3rkr_A           27 LSGQVAVVTGAS-RGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHS   90 (262)
T ss_dssp             TTTCEEEESSTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             cCCCEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCH
Confidence            366788877765 44544444    444 4899999999888877777666666788899988654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=95.12  E-value=0.15  Score=31.31  Aligned_cols=59  Identities=15%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..+    ++.+ .+|+.++.++...+.........+.++.++.+|+.+.
T Consensus         4 ~~k~vlITGas-~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   66 (247)
T 3lyl_A            4 NEKVALVTGAS-RGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDI   66 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCH
Confidence            45678877755 4444444    3444 4999999999888877777666666888999988764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.00  E-value=0.17  Score=31.94  Aligned_cols=61  Identities=25%  Similarity=0.293  Sum_probs=43.0

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   93 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQP   93 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence            367788888866443   2333444544 999999999888777776666555788889988764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.00  E-value=0.099  Score=34.09  Aligned_cols=49  Identities=20%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +.....++++||-+|+|. |.++..+++. +..+|+++|.+++.++.+++.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            455667888999999863 6666777764 444899999999988888764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=94.97  E-value=0.15  Score=31.99  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++.| ++..    +++.+ .+|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus         3 ~~k~~lVTGas~G-IG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~   65 (264)
T 3tfo_A            3 MDKVILITGASGG-IGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDR   65 (264)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             CCCEEEEeCCccH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            4567777776544 4333    33444 4899999999888877776666555788888888653

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=94.97  E-value=0.19  Score=29.47  Aligned_cols=45  Identities=13%  Similarity=0.091  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDI   79 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~   79 (115)
                      ...++++...... -+.-|||+|-|+|+.--++.+ .+...|+++|-
T Consensus        27 R~~L~~a~~~v~~-~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           27 RACLEHAIAQTAG-LSGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHHTTT-CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHHHHHhcC-CCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            4455666655443 456899999999999999985 56779999993

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.92  E-value=0.091  Score=34.27  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=35.6

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-.|+|. |..+..+++....+|+++|.+++.++.+++
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            344566788999999863 556666665434479999999999888875

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.91  E-value=0.14  Score=32.25  Aligned_cols=60  Identities=17%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++++|=.|++. .++..    +++.+. +|+.++.++...+...+.....+.++.++.+|+.+..
T Consensus        32 ~gk~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   95 (275)
T 4imr_A           32 RGRTALVTGSSR-GIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAG   95 (275)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTT
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHH
Confidence            677888777654 44444    334544 9999999988877777766655558889999987653

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=94.90  E-value=0.013  Score=38.72  Aligned_cols=46  Identities=17%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-----------------CCCeEEEEeCChhHHHHHHHHhhc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-----------------GADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      +..+|+|+||++|..++.+...                 +.-.|+..|+.....+.+-+.+..
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~  113 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI  113 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTT
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcch
Confidence            4568999999999987665432                 124788999999998888777653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=94.89  E-value=0.27  Score=31.32  Aligned_cols=61  Identities=28%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC------------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+ .+|+++|.+            ++.+..........+.++.++.+|+.+.
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDF  101 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence            366788888876553   233344454 499999987            5555555555555555788889988764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.87  E-value=0.11  Score=29.06  Aligned_cols=51  Identities=20%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           49 NKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ..+++=+|+|  .++..+++   ....+|+++|.+++.++.++..      .+.++.+|..+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~   59 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------GFDAVIADPTD   59 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEECCTTC
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------CCcEEECCCCC
Confidence            4578888885  45544442   2234999999999988776642      24667777654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.86  E-value=0.094  Score=34.50  Aligned_cols=48  Identities=29%  Similarity=0.410  Sum_probs=35.6

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-+|+| .|..+..+++. +..+|+++|.+++.++.+++
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            33455678899999976 35566666654 44489999999999988875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.84  E-value=0.067  Score=36.51  Aligned_cols=54  Identities=17%  Similarity=0.261  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ..++|+=+|||  ..+..+++   ...-.|+.+|.+++.++.+....     .+..++||+.+.
T Consensus         2 ~~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~   58 (461)
T 4g65_A            2 NAMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----DLRVVNGHASHP   58 (461)
T ss_dssp             CCEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCH
T ss_pred             CcCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCH
Confidence            34677766665  55555553   22348999999999998877655     467888887654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.80  E-value=0.31  Score=30.67  Aligned_cols=60  Identities=22%  Similarity=0.269  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC----------------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDID----------------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s----------------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|+.+|.+                ++.++.........+.++.++.+|+.+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            66788888876553   233344454 499999987                5555555555555555788888888754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.79  E-value=0.32  Score=30.55  Aligned_cols=61  Identities=21%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeC-------------ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-------------DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~-------------s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+++|.             +++.++...+.....+.++.++.+|+.+.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD   89 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence            367788888876543   2333444544 9999998             56666666666655555788888888653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.76  E-value=0.27  Score=30.29  Aligned_cols=59  Identities=27%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.++...+...+.....+.++.++.+|+.+.
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   74 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAG-ARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNT   74 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCH
Confidence            56678877754 55555544    344 4999999998776655555544444788888888653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.74  E-value=0.1  Score=34.30  Aligned_cols=48  Identities=29%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-+|+| .|..+..+++. +..+|+++|.+++.++.+++
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            34455678899999976 35566666654 44489999999999988865

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.71  E-value=0.28  Score=30.69  Aligned_cols=59  Identities=20%  Similarity=0.306  Sum_probs=40.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++ |.++..++    +.+ .+|++++.++...+...+.....+.++.++.+|+.+.
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   92 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNR   92 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCH
Confidence            56678877754 55555554    344 4899999998877766655554455788888988754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.70  E-value=0.095  Score=34.39  Aligned_cols=49  Identities=16%  Similarity=0.075  Sum_probs=36.8

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +.....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc
Confidence            344556788999999773 6666667764445999999999998887764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.65  E-value=0.11  Score=34.11  Aligned_cols=48  Identities=27%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-+|+|. |..+..+++. +..+|+++|.+++.++.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            334556788999999763 5566666654 44489999999999988865

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.64  E-value=0.32  Score=30.01  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++ |.++..++    +.+ .+|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~   68 (247)
T 2jah_A            6 QGKVALITGAS-SGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADR   68 (247)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            45678878765 44444443    444 4899999998877766655544444788888888653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.64  E-value=0.31  Score=30.30  Aligned_cols=59  Identities=22%  Similarity=0.379  Sum_probs=39.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..++    +.+ .+|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   68 (262)
T 1zem_A            6 NGKVCLVTGAGG-NIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSE   68 (262)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence            566788777654 4444443    444 4899999998877766655554454788888888653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.61  E-value=0.29  Score=30.74  Aligned_cols=60  Identities=25%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC------------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|+.+|.+            ...++.+.......+.++.++.+|+.+.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   83 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR   83 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence            56788888876543   233344454 489999987            5555555555555555788889888764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.61  E-value=0.24  Score=31.31  Aligned_cols=59  Identities=17%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++-++...+.+.+.....+. ++.++.+|+.+.
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~   74 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDP   74 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSC
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCc
Confidence            56678877765 44444443    444 4999999999887777666655443 789999998775

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.60  E-value=0.14  Score=33.46  Aligned_cols=49  Identities=27%  Similarity=0.281  Sum_probs=37.4

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||=.|+|. |.++..+++. +...|+++|.+++.++.+++.
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            445667888999999863 6666677754 454599999999999998876

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.58  E-value=0.31  Score=30.49  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=39.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC------------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+ .+|+.+|.+            ++.++...+.....+.++.++.+|+.+.
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   86 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDR   86 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            366788888865443   233344454 489999987            5555555555544455788999998754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.58  E-value=0.086  Score=34.66  Aligned_cols=48  Identities=25%  Similarity=0.328  Sum_probs=35.9

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-+|+| .|..+..+++ .+..+|+++|.+++.++.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            34455678899999976 3556666665 455589999999999988875

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.54  E-value=0.33  Score=30.41  Aligned_cols=59  Identities=19%  Similarity=0.201  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++.+++.++...+.....+.++.++.+|+.+.
T Consensus        20 ~~k~vlVTGas-~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   82 (273)
T 1ae1_A           20 KGTTALVTGGS-KGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSR   82 (273)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCc-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence            56788888765 44444443    444 4899999998877666555544455788888887653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.50  E-value=0.33  Score=30.49  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.++...+...+.....+.++.++.+|+.+.
T Consensus        21 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~   83 (277)
T 2rhc_B           21 DSEVALVTGAT-SGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV   83 (277)
T ss_dssp             TSCEEEEETCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence            55678877765 44444443    444 4899999998877665555544444788888887653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=94.50  E-value=0.13  Score=32.52  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.++..++.........+.++.++.+|+.+.
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   69 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDE   69 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            56788877766443   2333444544 899999999888777776655555788888887654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.49  E-value=0.37  Score=30.27  Aligned_cols=60  Identities=25%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.+++..+...+.....+.   ++.++.+|+.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~   75 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNE   75 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCH
Confidence            56788888865443   2333444544 899999999888777766655443   688888988764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.48  E-value=0.065  Score=34.78  Aligned_cols=49  Identities=20%  Similarity=0.178  Sum_probs=37.5

Q ss_pred             HhcCCCCCCeEEEEcCC--CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG--CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G--~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +.....++++||-.|+|  .|..+..+++...++|+++|.+++.++.+++.
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC
Confidence            44556678999999987  56677777753344999999999998888764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.44  E-value=0.39  Score=30.26  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=40.8

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..++++|=.|++.|.   ++..+++.+. +|+.++. +++..+.........+.++.++.+|+.+..
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~   92 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLS   92 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGG
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence            356778888765543   2333444444 8999996 666666665555555558899999987654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.42  E-value=0.064  Score=35.36  Aligned_cols=48  Identities=38%  Similarity=0.434  Sum_probs=36.5

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-+|+| .|.++..+++ .+..+|+++|.+++.++.+++
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            44455678899999986 4666666775 455589999999999988765

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=94.39  E-value=0.34  Score=30.04  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.+++..+...+.....+.++.++.+|+.+.
T Consensus         8 ~~k~vlVTGas-~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   70 (260)
T 2ae2_A            8 EGCTALVTGGS-RGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSR   70 (260)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            56678877754 44444443    444 4899999998877665555544444788888888653

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.36  E-value=0.28  Score=30.60  Aligned_cols=60  Identities=22%  Similarity=0.294  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhc-cCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~v~~~~~d~~~~~  109 (115)
                      +++++|=.|++.| ++..    +++.+. +|+.++.++..++.+.+.... .+.++.++.+|+.+..
T Consensus        19 ~~k~vlVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~   83 (266)
T 4egf_A           19 DGKRALITGATKG-IGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPD   83 (266)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence            5677887776544 4433    334444 899999998888776665544 3447899999987654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.35  E-value=0.42  Score=30.78  Aligned_cols=60  Identities=22%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .++++|=.|++.|.   ++..+++.+. +|++++.++..++.+.+.....+.  ++.++.+|+.+.
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~   71 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASR   71 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCH
Confidence            56788888876554   2333444544 899999999888777766655444  688888888653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.35  E-value=0.12  Score=33.89  Aligned_cols=48  Identities=23%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             hcCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           43 SFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .....++++||-+|+| .|..+..+++....+|+++|.+++.++.+++.
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l  222 (360)
T 1piw_A          174 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM  222 (360)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence            3456678899999985 35566666653334899999999999888763

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.34  E-value=0.31  Score=30.33  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccC-CceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..+    ++.+. +|+.++.+++.++.+.......+ .++.++.+|+.+.
T Consensus         9 ~~k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~   72 (262)
T 3pk0_A            9 QGRSVVVTGGT-KGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR   72 (262)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCH
Confidence            56778877755 4444444    34444 99999999988877777666555 3788999998764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.34  E-value=0.054  Score=32.23  Aligned_cols=45  Identities=13%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGC--GCGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~--G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++++||..|+  |.|.....++. .+ .+|+++|.+++..+.+++
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH
Confidence            34567889999994  45666666554 44 499999999988776643

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.32  E-value=0.26  Score=30.91  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=40.7

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..    +++.+. +|++++.++...+.........+.++.++.+|+.+.
T Consensus        27 ~~k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   89 (270)
T 3ftp_A           27 DKQVAIVTGASR-GIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDA   89 (270)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCH
Confidence            566788777554 44444    344544 999999999888777666665555778888887653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.31  E-value=0.14  Score=33.27  Aligned_cols=48  Identities=25%  Similarity=0.188  Sum_probs=35.1

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-.|+  |.|.....+++....+|+++|.+++..+.+++
T Consensus       163 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          163 KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            3335567889999998  36666666665334599999999988877765

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=94.23  E-value=0.49  Score=29.65  Aligned_cols=60  Identities=23%  Similarity=0.266  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeC-------------ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-------------DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~-------------s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.             ++..++...+.....+.++.++.+|+.+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            66788888866543   2333445544 9999998             56666555555555555788888888764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.22  E-value=0.27  Score=31.90  Aligned_cols=46  Identities=33%  Similarity=0.426  Sum_probs=35.1

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++++||-+|+| .|.....+++....+|+++|.++..++.+++
T Consensus       160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          160 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            355678899999986 4666666665434599999999999888765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.21  E-value=0.12  Score=33.87  Aligned_cols=49  Identities=31%  Similarity=0.374  Sum_probs=35.9

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||-+|+| .|.++..+++ .+..+|+++|.+++.++.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            33455678899999976 3556666665 4545899999999999888754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.20  E-value=0.13  Score=33.24  Aligned_cols=48  Identities=10%  Similarity=0.113  Sum_probs=34.8

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +.....++++||-.|+  |.|.....++.....+|+++|.+++.++.+++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~  188 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ  188 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            3445567889999997  46666666665334499999999988887743

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=94.13  E-value=0.4  Score=30.82  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=38.9

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC------------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+++|.+            ++.++.........+.++.++.+|+.+.
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~  119 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDL  119 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            366788877766543   2333444544 99999886            5555555555545555788888888653

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.13  E-value=0.39  Score=29.90  Aligned_cols=59  Identities=22%  Similarity=0.364  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..+    ++.+ .+|+.++.+++..+...+.....  +.++.++.+|+.+.
T Consensus        12 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   76 (267)
T 1iy8_A           12 TDRVVLITGGG-SGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDE   76 (267)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence            56788878765 4444444    3444 49999999988776655544333  33788888888654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.12  E-value=0.16  Score=31.97  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..    +++.+. +|+.++.++...+...+.....+.++.++.+|+.+.
T Consensus        25 ~gk~~lVTGas~-gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~   87 (271)
T 4ibo_A           25 GGRTALVTGSSR-GLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSE   87 (271)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            677888777554 44444    344444 999999999888777776665555788888888654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.12  E-value=0.18  Score=33.24  Aligned_cols=49  Identities=31%  Similarity=0.300  Sum_probs=37.1

Q ss_pred             HhcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||-.|+|. |.++..+++. +..+|+++|.+++..+.+++.
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            444666888999999863 5566666654 445999999999999888764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=94.11  E-value=0.27  Score=30.51  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++.++...+...+.....+.++.++.+|+.+.
T Consensus         4 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   66 (260)
T 2qq5_A            4 NGQVCVVTGAS-RGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQE   66 (260)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCH
Confidence            45677777754 44554444    444 4899999998877666555544444678888888653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.08  E-value=0.29  Score=31.15  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccC-CceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..    +++.+. +|+.++.++..++...+.....+ .++.++.+|+.+.
T Consensus        40 ~~k~vlVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~  103 (293)
T 3rih_A           40 SARSVLVTGGTK-GIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDP  103 (293)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCH
Confidence            566788777654 44444    344544 99999999988877777666655 3788899998764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.04  E-value=0.15  Score=33.18  Aligned_cols=45  Identities=16%  Similarity=0.032  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhcC--CCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLLG--ADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .. ++++||-+|+| .|..+..+++..  ..+|+++|.+++.++.+++.
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l  215 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL  215 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh
Confidence            55 78899999986 355666666533  45899999999998888763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.01  E-value=0.1  Score=35.11  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ...+|+=+|+|  .++..++   ......|+++|.+++.++.++..      .+.++.||+.+.
T Consensus         3 ~~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~   58 (413)
T 3l9w_A            3 HGMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF------GMKVFYGDATRM   58 (413)
T ss_dssp             -CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT------TCCCEESCTTCH
T ss_pred             CCCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC------CCeEEEcCCCCH
Confidence            34578877775  4444443   22345999999999999887642      245677887653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.95  E-value=0.56  Score=29.20  Aligned_cols=60  Identities=20%  Similarity=0.147  Sum_probs=41.1

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-cCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.+.+.... .+. ++.++.+|+.+.
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~   71 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDA   71 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCH
Confidence            56788888876553   2333444544 899999999888777666554 333 588888988764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.93  E-value=0.2  Score=32.62  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             HhcCCCCCCeEEEEcCC--CChHHHHHHhcC-CCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG--CGTLGAAATLLG-ADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G--~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||-.|+|  .|.....+++.. ..+|+++|.+++.++.+++.
T Consensus       164 ~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          164 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence            33455678899999987  444555666432 44899999999988887653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.93  E-value=0.17  Score=32.81  Aligned_cols=46  Identities=33%  Similarity=0.404  Sum_probs=35.9

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||-.|+|. |..+..+++ .+..+|+++|.+++.++.+++.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV  215 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            455788999999863 666677775 4467999999999999888764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.92  E-value=0.24  Score=32.74  Aligned_cols=48  Identities=27%  Similarity=0.380  Sum_probs=35.8

Q ss_pred             HhcC-CCCCCeEEEEcCC-CChHHHHHHhcCC-CeEEEEeCChhHHHHHHH
Q 033605           42 NSFG-DVSNKVVADFGCG-CGTLGAAATLLGA-DQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~-~~~~~~vLDlG~G-~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~   89 (115)
                      .... ..++++||-.|+| .|..+..+++... .+|++++.+++.++.+++
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            3445 5678899999966 4556666775434 599999999999888875

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.89  E-value=0.51  Score=28.65  Aligned_cols=58  Identities=17%  Similarity=0.164  Sum_probs=38.5

Q ss_pred             CCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhh-ccCCceeEEEccccCC
Q 033605           49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNL  108 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~v~~~~~d~~~~  108 (115)
                      ++++|=.|++ |.++..++    +.+ .+|+.++-+++.++...+... ..+.++.++.+|+.+.
T Consensus         2 ~k~vlITGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   64 (235)
T 3l77_A            2 MKVAVITGAS-RGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKA   64 (235)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCH
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCH
Confidence            3567767754 44444444    444 489999999887776665544 3445788899988764

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.87  E-value=0.48  Score=29.36  Aligned_cols=59  Identities=20%  Similarity=0.242  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.++...+...+..... +.++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~   69 (263)
T 3ai3_A            6 SGKVAVITGSS-SGIGLAIAEGFAKEG-AHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATP   69 (263)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            45678877755 44444443    444 49999999987766555444332 44688888888653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.78  E-value=0.48  Score=29.42  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEE-eCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+ +.++...+.........+.++.++.+|+.+.
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNA   70 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence            66788888876553   2333444544 88887 6777766666665555555788888888654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.75  E-value=0.57  Score=29.74  Aligned_cols=58  Identities=22%  Similarity=0.176  Sum_probs=40.7

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=-|++.|.   .+..+++.+. +|+.+|.+++.++.+.+..   +.++..+++|+.+.
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~   87 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GGGAVGIQADSANL   87 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCH
Confidence            478888988877664   3344445555 9999999998877665443   33677888887654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.74  E-value=0.57  Score=29.38  Aligned_cols=61  Identities=16%  Similarity=0.090  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC------------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s------------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.+|.+            ...+..........+.++.++.+|+.+.
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   83 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR   83 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            366788888866543   2333444544 89999986            4445554444444555788888888664

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.72  E-value=0.13  Score=33.33  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=35.7

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELAS   88 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~   88 (115)
                      +.....++++||-.|+  |.|..+..+++....+|++++.+++.++.+.
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  191 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV  191 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4445668889999998  4666777777544459999999998888773

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.62  E-value=0.11  Score=33.38  Aligned_cols=48  Identities=19%  Similarity=0.058  Sum_probs=36.6

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||=.|+| .|..+..+++....+|++++ +++..+.+++.
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l  184 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR  184 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc
Confidence            45566688999999995 46667777754334999999 99999988764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.62  E-value=0.52  Score=29.17  Aligned_cols=58  Identities=16%  Similarity=0.206  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.+++.++...+.....+.++.++.+|+.+
T Consensus        13 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~   74 (260)
T 2zat_A           13 ENKVALVTAST-DGIGLAIARRLAQDG-AHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK   74 (260)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC
Confidence            56677777654 55554444    444 499999999877766555544444467788888765

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.61  E-value=0.47  Score=29.62  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.| ++..+    ++.+. +|+.++- ++...+...+.....+.++.++.+|+.+.
T Consensus        27 l~~k~vlITGas~g-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   91 (271)
T 4iin_A           27 FTGKNVLITGASKG-IGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASE   91 (271)
T ss_dssp             CSCCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence            35678887776544 44443    34444 8999988 55555655555555555788899988654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=93.61  E-value=0.23  Score=32.35  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=28.9

Q ss_pred             HHHHHHHH-hcCCCCCCeEEEEcC------CCChHHHHHHhcCC--CeEEEEeCChhH
Q 033605           35 RMLYTAEN-SFGDVSNKVVADFGC------GCGTLGAAATLLGA--DQVIAIDIDSDS   83 (115)
Q Consensus        35 ~~~~~~~~-~~~~~~~~~vLDlG~------G~G~~~~~~~~~~~--~~v~~vD~s~~~   83 (115)
                      ++.+.+-. ....+.+++|||+|+      -.|..  .+.+...  +.|+++|+.+-.
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~  150 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV  150 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc
Confidence            44554422 223456889999996      55653  2333322  499999999853

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.59  E-value=0.48  Score=29.72  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.+++.++...+.....+.   ++.++.+|+.+.
T Consensus         5 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (280)
T 1xkq_A            5 SNKTVIITGSS-NGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTE   70 (280)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCH
Confidence            55677777754 44444444    444 4999999998877766555544443   678888888753

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=93.58  E-value=0.55  Score=29.74  Aligned_cols=60  Identities=18%  Similarity=0.078  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEe-CChhHHHHHHHHhh-ccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAID-IDSDSLELASENAA-DLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD-~s~~~~~~a~~~~~-~~~~~v~~~~~d~~~~~  109 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++ .+++.++.+.+... ..+.++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas-~GIG~aia~~la~~G-~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAA-KRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            55677777655 44554444    444 4999999 88877766655554 33447889999987754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.57  E-value=0.64  Score=28.70  Aligned_cols=57  Identities=19%  Similarity=0.173  Sum_probs=36.7

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++|=.|++ |.++..++    +.+ .+|++++.++...+...+.....+.++.++.+|+.+.
T Consensus         3 k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   63 (256)
T 1geg_A            3 KVALVTGAG-QGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR   63 (256)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence            466666654 44444444    444 4899999998777665555544444678888887653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=93.57  E-value=0.52  Score=29.28  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=39.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEE-eCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+. +|+.+ +.++...+...+.....+.++.++.+|+.+.
T Consensus         3 ~~k~vlVTGas-~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   66 (258)
T 3oid_A            3 QNKCALVTGSS-RGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQP   66 (258)
T ss_dssp             CCCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEecCC-chHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            45677766655 44444443    4444 78776 7888777776666665555788899988764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.57  E-value=0.46  Score=29.09  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.| |+|.++..++    +.+ .+|++++.++...+...+.....+.++.++.+|+.+.
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   72 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE   72 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCH
Confidence            556777666 4566665555    334 4899999998777665555544444778888887653

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.56  E-value=0.3  Score=32.00  Aligned_cols=46  Identities=15%  Similarity=0.058  Sum_probs=35.7

Q ss_pred             cCCCCCCeEEEEc--CCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFG--CGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG--~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++++||-.|  .|.|.....+++....+|++++.+++.++.+++
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            3456788999999  457777887776434499999999988888765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.55  E-value=0.56  Score=29.35  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=39.1

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..+    ++.+. +|+.++. ++...+...+.....+.++.++.+|+.+.
T Consensus        27 ~~k~vlVTGas~-gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~   90 (269)
T 4dmm_A           27 TDRIALVTGASR-GIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQE   90 (269)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            567788777654 444443    34444 8988887 66666666665555555788889988764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.50  E-value=0.53  Score=29.06  Aligned_cols=60  Identities=25%  Similarity=0.200  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.| |+|.++..++    +....+|++++-++...+...+.+...+.++.++.+|+.+.
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   66 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL   66 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCH
Confidence            456777666 5566665554    31244999999988777666655554444788888888753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.49  E-value=0.22  Score=32.37  Aligned_cols=45  Identities=22%  Similarity=0.151  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++++||-.|+  |.|.....+++....+|++++.+++.++.+++
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            4557889999998  56777777775434599999999998888765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=93.49  E-value=0.55  Score=29.41  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.| ++..    +++.+. +|+.++.++..++...+..   +.++.++.+|+.+.
T Consensus        29 ~~k~vlVTGas~G-IG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~   88 (281)
T 3ppi_A           29 EGASAIVSGGAGG-LGEATVRRLHADGL-GVVIADLAAEKGKALADEL---GNRAEFVSTNVTSE   88 (281)
T ss_dssp             TTEEEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEcCCCCH
Confidence            5678888886654 4433    444544 8999999988776665544   33688888888654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.48  E-value=0.76  Score=29.09  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhH-HHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDS-LELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~-~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.| ++..    +++.+ .+|+.++.++.. .+...+.....+.++.++.+|+.+.
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~  109 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDE  109 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            5678888886554 4433    34444 489999988753 4444444444555788899988764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.44  E-value=0.45  Score=27.01  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCCh-hHHHHHHHHhhccCCceeEEEccccC
Q 033605           49 NKVVADFGCGCGTLGAAATL---LGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ..+++=+|+  |..+..+++   ....+|+++|.++ +.++........   .+.++.+|..+
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~---~~~~i~gd~~~   60 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD---NADVIPGDSND   60 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT---TCEEEESCTTS
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC---CCeEEEcCCCC
Confidence            346776765  666555542   2234899999974 545444433221   46778888754

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.39  E-value=0.44  Score=29.99  Aligned_cols=59  Identities=14%  Similarity=0.295  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++-++..++.........+. ++.++.+|+.+.
T Consensus        27 ~~k~vlITGas-ggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   90 (286)
T 1xu9_A           27 QGKKVIVTGAS-KGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDM   90 (286)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCH
Confidence            46688877754 55554444    444 4899999998877766555444443 678888888753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.39  E-value=0.78  Score=28.62  Aligned_cols=60  Identities=17%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHh-hccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++ |.++..++    +.+ .+|++++.++..++...+.. ...+.++.++.+|+.+.
T Consensus        19 l~~k~~lVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~   83 (267)
T 1vl8_A           19 LRGRVALVTGGS-RGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY   83 (267)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCH
T ss_pred             CCCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence            356778877765 44444443    444 48999999987766554444 22344678888887653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=93.37  E-value=0.71  Score=28.97  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=37.0

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++-++ ..+...+.....+.++.++.+|+.+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~   91 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADL   91 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCH
Confidence            367788888876543   2333444544 899999554 44444444444444788888888764

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.35  E-value=0.29  Score=32.05  Aligned_cols=46  Identities=26%  Similarity=0.313  Sum_probs=33.8

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHhcC-CCeEEEEeCChhHHHHHHH
Q 033605           44 FGDVSNKVVADFGCG-CGTLGAAATLLG-ADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~   89 (115)
                      ....++++||=.|+| .|..+..+++.. ..+|+++|.+++.++.+++
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~  229 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER  229 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            456678899999985 344555566532 4489999999998888875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.32  E-value=0.21  Score=33.22  Aligned_cols=46  Identities=28%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||=+|+| .|..+..+++. +..+|+++|.++..++.+++.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            35578899999986 35566666654 445999999999999888765

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=93.32  E-value=0.66  Score=28.69  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=35.8

Q ss_pred             CeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhH--HHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDS--LELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~--~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++|=.|++ |.++..+    ++.+. +|+.++.++..  ++...+.....+.++.++.+|+.+.
T Consensus         3 k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   65 (258)
T 3a28_C            3 KVAMVTGGA-QGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDK   65 (258)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            467767755 4444443    34444 89999988776  5554444444344788888888653

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.29  E-value=0.37  Score=31.18  Aligned_cols=51  Identities=39%  Similarity=0.451  Sum_probs=36.9

Q ss_pred             HHHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           40 AENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ........++++||=.|+|. |.++..+++ .+...++++|.+++.++.+++.
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l  204 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF  204 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc
Confidence            33444666888999999873 445555665 4566789999999998888764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.29  E-value=0.17  Score=32.76  Aligned_cols=48  Identities=10%  Similarity=0.050  Sum_probs=35.5

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ......++++||-.|+  |.|.....+++....+|++++.+++.++.+++
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  198 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT  198 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3345567889999997  46666777765434599999999988887763

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.28  E-value=0.43  Score=30.90  Aligned_cols=51  Identities=27%  Similarity=0.264  Sum_probs=36.7

Q ss_pred             HHhcCCCCCCeEEEEcCCCCh-HHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           41 ENSFGDVSNKVVADFGCGCGT-LGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~-~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +......++++||=+|+|.+. +...+++ .+..+|+++|.+++.++.+++.-
T Consensus       156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~G  208 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIG  208 (348)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTT
T ss_pred             ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcC
Confidence            344456678899999998543 4444444 55679999999999888776643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.20  E-value=0.9  Score=28.15  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCC--CCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCG--CGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G--~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      +++++|=.|++  .|.   ++..+++.+. +|+.++-++...+.+.+.....+. ++.++.+|+.+..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   72 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA   72 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH
Confidence            56788888876  233   3344445554 899999888777766666655554 7889999987643

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=93.19  E-value=0.63  Score=28.56  Aligned_cols=59  Identities=20%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|+.++. ++...+...+.....+.++.++.+|+.+.
T Consensus         3 ~~k~vlVTGa-s~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   66 (246)
T 2uvd_A            3 KGKVALVTGA-SRGIGRAIAIDLAKQG-ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANA   66 (246)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            4557776664 455554444    344 48999988 77666655554444444678888887653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.18  E-value=0.49  Score=26.03  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             CCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHH
Q 033605           49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +.+|+=+|+  |..+..++    +.+ .+|+++|.+++.++.++.
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~   45 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASA   45 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHH
Confidence            457887876  55554444    333 489999999987766554

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.14  E-value=0.63  Score=28.81  Aligned_cols=59  Identities=15%  Similarity=0.091  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++...+.........+.++.++.+|+.+.
T Consensus        13 ~~k~vlITGa-sggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   75 (266)
T 1xq1_A           13 KAKTVLVTGG-TKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLR   75 (266)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCH
Confidence            4567776665 555555544    344 4899999988777665555544444788888887653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.13  E-value=0.66  Score=29.27  Aligned_cols=59  Identities=29%  Similarity=0.400  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++-++...+...+..... +.++.++.+|+.+.
T Consensus        25 ~~k~vlITGas-ggiG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           25 QGKVAFITGGG-TGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDP   88 (302)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCH
Confidence            45678877754 55554444    444 48999999987776555544332 44788888888753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.13  E-value=0.23  Score=29.11  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCChHHHHHH----hc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           49 NKVVADFGCGCGTLGAAAT----LL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~----~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      +.+|+=+|+|  .++..++    +. +. +|+++|.+++.++.++..      .+.++.+|..
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~------g~~~~~gd~~   92 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE------GRNVISGDAT   92 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT------TCCEEECCTT
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC------CCCEEEcCCC
Confidence            5588888875  4443333    33 44 899999999888776532      2345556654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=93.11  E-value=0.72  Score=28.50  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=40.8

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc--C-CceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--E-LDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~-~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++...+.....  + .++.++.+|+.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   71 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC   71 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCH
Confidence            56688888876543   2334445555 9999999998887776655443  2 3678888888764

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.08  E-value=0.79  Score=28.84  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.+++..+...+..   +.++.++.+|+.+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~   87 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GCGAAACRVDVSDE   87 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCH
Confidence            66788888876553   2344445544 9999999988776655544   33678888887654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.03  E-value=0.22  Score=32.37  Aligned_cols=49  Identities=18%  Similarity=0.105  Sum_probs=37.2

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||-.|+  |.|..+..+++....+|++++.+++..+.+++.
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            4445567889999997  367777777764445999999999988888764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.03  E-value=0.52  Score=29.64  Aligned_cols=58  Identities=12%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.+++..+...+.....+ ++.++.+|+.+.
T Consensus        28 ~~k~vlVTGas-~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~   89 (276)
T 2b4q_A           28 AGRIALVTGGS-RGIGQMIAQGLLEAG-ARVFICARDAEACADTATRLSAYG-DCQAIPADLSSE   89 (276)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCH
Confidence            56678877765 44444443    444 489999999877766555554434 677777777653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.96  E-value=0.51  Score=28.94  Aligned_cols=59  Identities=17%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCC-hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-+ +..++...+.....+.++.++.+|+.+.
T Consensus         6 ~~k~vlVTGa-sggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   69 (258)
T 3afn_B            6 KGKRVLITGS-SQGIGLATARLFARAG-AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATS   69 (258)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTT-CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCC-CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCH
Confidence            4567776654 566555554    344 489999988 6666555554444444788888888654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.94  E-value=0.65  Score=29.54  Aligned_cols=59  Identities=25%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++.+++.++...+.....+.   ++.++.+|+.+.
T Consensus        25 ~~k~vlVTGas-~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~   90 (297)
T 1xhl_A           25 SGKSVIITGSS-NGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEA   90 (297)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCH
Confidence            56678777754 45554444    444 4899999998877666555544443   678888887654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.93  E-value=0.99  Score=27.94  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+++.++...+..   +.++.++.+|+.+.
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~   66 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---GPRVHALRSDIADL   66 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCH
Confidence            366788888866543   2333444544 9999999988776665544   22678888887654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=92.93  E-value=0.75  Score=29.73  Aligned_cols=60  Identities=18%  Similarity=0.078  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEe-CChhHHHHHHHHhh-ccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAID-IDSDSLELASENAA-DLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD-~s~~~~~~a~~~~~-~~~~~v~~~~~d~~~~~  109 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++ .++..++.+.+.+. ..+.++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas-~GIG~aia~~La~~G-~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAA-KRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCch
Confidence            55677766654 55554444    444 4999999 88877766655543 33447889999988754

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=92.89  E-value=0.52  Score=30.30  Aligned_cols=59  Identities=17%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCC----------hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDID----------SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s----------~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..    +++.+ .+|+.+|.+          ....+.........+.++.++.+|+.+.
T Consensus        26 ~gk~vlVTGas~-GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   98 (322)
T 3qlj_A           26 DGRVVIVTGAGG-GIGRAHALAFAAEG-ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADW   98 (322)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTT-CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSH
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCC-CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            567888777654 44443    44454 499999987          5566655555555555788888887654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.80  E-value=0.27  Score=31.97  Aligned_cols=48  Identities=33%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ..... ++++||-+|+| .|.....+++. +..+|+++|.+++.++.+++.
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~  211 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV  211 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            44455 78899999985 35566666654 434899999999988888753

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.80  E-value=0.98  Score=28.53  Aligned_cols=59  Identities=24%  Similarity=0.326  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhc-----cCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-----LELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++...+...+....     .+.++.++.+|+.+.
T Consensus        17 ~~k~vlVTGa-sggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T 1yxm_A           17 QGQVAIVTGG-ATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE   84 (303)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCH
Confidence            5668887775 455555554    344 4899999998777665554433     233788888988653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.71  E-value=0.53  Score=29.72  Aligned_cols=60  Identities=17%  Similarity=0.132  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChh-------HHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSD-------SLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~-------~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.++.       .++...+.....+.++.++.+|+.+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   77 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDG   77 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            56788888876553   2333444444 9999998876       34444444444455788888888764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.71  E-value=0.26  Score=32.36  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605           48 SNKVVADFG-CG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        48 ~~~~vLDlG-~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ++++||=.| +| .|..+..+++. +..+|++++.+++.++.+++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            577899888 44 67778888874 66799999999998888865

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.71  E-value=0.85  Score=28.68  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..+++   ....+|++++-++...+...+.....+.++.++.+|+.+.
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~  105 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK  105 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCH
Confidence            35677777654 565555552   1235899998887776665555544445788888888653

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=92.64  E-value=0.83  Score=27.80  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=37.5

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCC------eEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGAD------QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~------~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++|=.|+ +|.++..++    +.+..      +|++++.++..++.........+.++.++.+|+.+.
T Consensus         3 k~vlITGa-sggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   70 (244)
T 2bd0_A            3 HILLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDM   70 (244)
T ss_dssp             EEEEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSH
T ss_pred             CEEEEECC-CChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCH
Confidence            45666664 555555544    33332      799999988777666655544444788888888653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.64  E-value=0.26  Score=31.81  Aligned_cols=46  Identities=20%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||-.|+  |.|..+..+++....+|++++.+++.++.+++.
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  192 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY  192 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            4567889999994  366667777764445999999999988877663

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.59  E-value=0.82  Score=28.30  Aligned_cols=59  Identities=20%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++- ++...+.........+.++.++.+|+.+.
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   83 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP   83 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence            4567886664 566655554    344 48999988 77666555554444445788888888653

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=92.59  E-value=0.72  Score=28.76  Aligned_cols=59  Identities=8%  Similarity=-0.014  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeC-ChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~-s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++. ++...+...+..... +.++.++.+|+.+.
T Consensus        10 ~~k~~lVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   74 (276)
T 1mxh_A           10 ECPAAVITGGA-RRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLS   74 (276)
T ss_dssp             -CCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCc
Confidence            45677766654 55555544    344 49999998 877766655544333 44788889998765

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.55  E-value=0.81  Score=28.18  Aligned_cols=57  Identities=23%  Similarity=0.278  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++..+......   +.++.++.+|+.+.
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~   64 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GKKARAIAADISDP   64 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEECCCCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCH
Confidence            66788888866543   2333444544 8999999988776655444   33677888887653

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.55  E-value=0.75  Score=28.84  Aligned_cols=60  Identities=17%  Similarity=0.112  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-cCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.++............ .+.++.++.+|+.+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   89 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAP   89 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            66788888866443   2333334444 999999998776655544432 344788888888654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.53  E-value=0.77  Score=28.32  Aligned_cols=56  Identities=16%  Similarity=0.294  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      +++++|=.|++.| ++..    +++.+. +|+.++.+++.++...+.....+. ++.++..|+
T Consensus        11 ~~k~vlVTGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~   71 (252)
T 3f1l_A           11 NDRIILVTGASDG-IGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDL   71 (252)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCT
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            5678888886544 4433    344544 899999998887766665544333 677888887

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.48  E-value=0.61  Score=29.10  Aligned_cols=59  Identities=20%  Similarity=0.163  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..    +++.+. +|++++-++...+...+.....+.++.++.+|+.+.
T Consensus        33 ~~k~vlITGasg-gIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   95 (279)
T 3ctm_A           33 KGKVASVTGSSG-GIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDP   95 (279)
T ss_dssp             TTCEEEETTTTS-SHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCH
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCH
Confidence            567888777654 44433    444544 899999887665555444443344688888887653

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.47  E-value=0.36  Score=31.52  Aligned_cols=47  Identities=11%  Similarity=0.070  Sum_probs=34.3

Q ss_pred             hcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           43 SFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .....++++||-.|+  |.|.....+++....+|++++.+++.++.+++
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence            345567889999996  45666666665434599999999988887654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.47  E-value=0.44  Score=30.08  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++.+++.++...+.....+. .+.++.+|+.+.
T Consensus        32 ~gk~~lVTGas-~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   95 (281)
T 4dry_A           32 EGRIALVTGGG-TGVGRGIAQALSAEG-YSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDP   95 (281)
T ss_dssp             --CEEEETTTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCH
Confidence            56778877765 44444443    444 4999999999887766655543332 358888888654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.42  E-value=0.23  Score=31.97  Aligned_cols=47  Identities=11%  Similarity=0.105  Sum_probs=34.9

Q ss_pred             cCCCCCCeEEEEc-C-CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           44 FGDVSNKVVADFG-C-GCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        44 ~~~~~~~~vLDlG-~-G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ....++++||-.| + |.|..+..+++....+|++++.+++.++.+++.
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  184 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL  184 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            3456788999988 3 366677777754344999999999998888764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=92.42  E-value=0.23  Score=31.61  Aligned_cols=44  Identities=16%  Similarity=0.075  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           46 DVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        46 ~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ..++++||-.|+  |.|.....+++....+|++++.+++.++.+++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA  168 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            457889999997  35667777775434599999999998888765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.41  E-value=0.64  Score=29.53  Aligned_cols=59  Identities=19%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCC----Ch-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGC----GT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~----G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.    |. ++..+++.+. +|+.++.++...+.+.+.....+ .+.++.+|+.+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~   92 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG-VKLTVPCDVSDA   92 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT-CCEEEECCTTCH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-CeEEEEcCCCCH
Confidence            567899888753    32 3344445544 89999999876665555544433 467888887654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.40  E-value=0.5  Score=30.49  Aligned_cols=47  Identities=15%  Similarity=0.043  Sum_probs=35.0

Q ss_pred             hcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           43 SFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .....++++||-.|+  |.|.....+++....+|++++.+++.++.+++
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            334567889999995  56777777765434599999999988887765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.40  E-value=1.2  Score=27.54  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcCC-CChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCG-CGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G-~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++ +|.++..+    ++.+ .+|+.++.++...+.+++.....+ ++.++.+|+.+.
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   76 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADD   76 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhHHHHHHHHHHcC-CcEEEECCCCCH
Confidence            467889989864 24444444    3444 499999988766665555544444 577888887654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=92.38  E-value=1.1  Score=27.76  Aligned_cols=59  Identities=25%  Similarity=0.333  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++.++...+...+.....  +.++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   70 (260)
T 2z1n_A            6 QGKLAVVTAGS-SGLGFASALELARNG-ARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREP   70 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCH
Confidence            45678877765 44444443    444 48999999987766555444322  22678888887653

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.37  E-value=0.99  Score=27.53  Aligned_cols=57  Identities=23%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHh-hccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~v~~~~~d~~~~  108 (115)
                      +++|=.|+ +|.++..++    +.+ .+|++++.++...+...+.. ...+.++.++.+|+.+.
T Consensus         3 k~vlItGa-sggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   64 (250)
T 2cfc_A            3 RVAIVTGA-SSGNGLAIATRFLARG-DRVAALDLSAETLEETARTHWHAYADKVLRVRADVADE   64 (250)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCH
T ss_pred             CEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence            46776665 455555544    344 48999999887766555444 22233678888888653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=92.33  E-value=0.86  Score=28.05  Aligned_cols=59  Identities=19%  Similarity=0.104  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++- ++...+...+.....+.++.++.+|+.+.
T Consensus         6 ~~k~vlITGa-sggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~   69 (261)
T 1gee_A            6 EGKVVVITGS-STGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE   69 (261)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence            4567776664 455555544    344 48999998 76666555444444444678888887653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=92.24  E-value=1.3  Score=27.78  Aligned_cols=60  Identities=12%  Similarity=0.096  Sum_probs=39.3

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+++++|=-|.+.|.   .+..+++.+. +|+.+|.+..  +...+.....+.++.++++|+.+..
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~   69 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGGNASALLIDFADPL   69 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTT
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHH
Confidence            367788877777665   3444555555 9999998754  2333444445558889999987643

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=92.23  E-value=0.8  Score=28.22  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccC-------CceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLE-------LDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++-++...+...+.....+       .++.++.+|+.+.
T Consensus         6 ~~k~vlITGas-ggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   75 (264)
T 2pd6_A            6 RSALALVTGAG-SGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEA   75 (264)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCH
Confidence            45677777654 44554444    444 489999999877665554443322       3678888887653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.23  E-value=1.3  Score=27.60  Aligned_cols=60  Identities=25%  Similarity=0.300  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC-hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.. +...+...+.....+.++.++.+|+.+.
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   80 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQV   80 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence            56788877765443   2333444544 88887764 4555555555555555788899988764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.20  E-value=1.3  Score=28.01  Aligned_cols=60  Identities=17%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             CCCCeEEEEcCCCC----h-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCG----T-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G----~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|    . ++..+++.+. +|+.++.++...+.+++.....+ ++.++.+|+.+.
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~   93 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG-AFVAGHCDVADA   93 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT-CEEEEECCTTCH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CceEEECCCCCH
Confidence            46788999997633    2 3344455554 89999988765555554444333 577888888654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.20  E-value=0.88  Score=28.65  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCCh-hHHHHHHHHhh-ccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDS-DSLELASENAA-DLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~-~~~~~a~~~~~-~~~~~v~~~~~d~~~  107 (115)
                      +++++|=.|++ |.++..+    ++.+. +|+.++.++ +..+...+... ..+.++.++.+|+.+
T Consensus        22 ~~k~~lVTGas-~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~   85 (288)
T 2x9g_A           22 EAPAAVVTGAA-KRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTN   85 (288)
T ss_dssp             CCCEEEETTCS-SHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCC
Confidence            56678877765 4444444    34554 899999987 66655544443 334478888899876

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.18  E-value=1.2  Score=27.82  Aligned_cols=59  Identities=19%  Similarity=0.262  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++..++.........+  .++.++.+|+.+.
T Consensus        31 ~~k~vlVTGa-sggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   95 (279)
T 1xg5_A           31 RDRLALVTGA-SGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE   95 (279)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCH
Confidence            4567887775 455555444    344 489999999877766655544433  2577888887654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.17  E-value=0.47  Score=31.00  Aligned_cols=46  Identities=22%  Similarity=0.208  Sum_probs=32.8

Q ss_pred             hcCCC-CCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605           43 SFGDV-SNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELAS   88 (115)
Q Consensus        43 ~~~~~-~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~   88 (115)
                      ..... ++++||-+|+| .|..+..+++....+|++++.+++.++.++
T Consensus       174 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          174 HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL  221 (357)
T ss_dssp             HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH
T ss_pred             hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            34555 78899999875 345555666532349999999998887776

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=92.14  E-value=1.1  Score=27.32  Aligned_cols=56  Identities=21%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~  105 (115)
                      +++++|=.|++ |.++..++    +.+. +|+.++.++..++...+.....+. ++.++..|+
T Consensus        13 ~~k~vlITGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~   73 (247)
T 3i1j_A           13 KGRVILVTGAA-RGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL   73 (247)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCT
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence            56788877765 44444443    4444 899999999888877776665543 667777766

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=92.14  E-value=0.96  Score=27.55  Aligned_cols=59  Identities=20%  Similarity=0.284  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEE-eCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+++ +.++...+...+.....+.++.++.+|+.+.
T Consensus         4 ~~~~vlItGas-ggiG~~~a~~l~~~G-~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   67 (247)
T 2hq1_A            4 KGKTAIVTGSS-RGLGKAIAWKLGNMG-ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNP   67 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTT-CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSH
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCC-CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            45677766654 55555444    344 489888 5666655555444444444788888887653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.11  E-value=1.2  Score=27.50  Aligned_cols=56  Identities=25%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..    +++.+. +|+.+|.+++..+......   +.++.++.+|+.+.
T Consensus         7 ~~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~   66 (259)
T 4e6p_A            7 EGKSALITGSA-RGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQ   66 (259)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCH
Confidence            56788888865 444444    344444 8999999988776655443   23678888887653

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=92.10  E-value=0.74  Score=28.77  Aligned_cols=54  Identities=20%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             CeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++||=-|++.|.   .+..+++.+. +|+.+|.+++..+...+    ...++.++++|+.+.
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~   59 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAK----ERPNLFYFHGDVADP   59 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT----TCTTEEEEECCTTSH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hcCCEEEEEecCCCH
Confidence            467767766654   3444445554 99999999876654432    223678888888653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.07  E-value=0.77  Score=28.65  Aligned_cols=59  Identities=20%  Similarity=0.240  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHh---hccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENA---ADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|++++-++..++...+..   ...+.++.++.+|+.+.
T Consensus         5 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   70 (278)
T 1spx_A            5 AEKVAIITGSS-NGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTD   70 (278)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCH
Confidence            45677766654 44444444    444 49999999988776655544   22222678888888653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=92.05  E-value=1.1  Score=27.33  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=37.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      .+++++|=.|++. .++..++    +.+ .+|+.++.++..++...+....   ++.++.+|+.+
T Consensus        12 ~~~k~vlVTGas~-gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~   71 (249)
T 3f9i_A           12 LTGKTSLITGASS-GIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNALKD---NYTIEVCNLAN   71 (249)
T ss_dssp             CTTCEEEETTTTS-HHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCS---SEEEEECCTTS
T ss_pred             CCCCEEEEECCCC-hHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHhcc---CccEEEcCCCC
Confidence            4667888777654 4444443    444 4899999998877766554432   57777777755

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=92.03  E-value=1  Score=28.33  Aligned_cols=60  Identities=12%  Similarity=0.118  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=-|++.|.   .+..+++.+. +|+.++.+++..+.+... ...+.++.++.+|+.+.
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~   67 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDAL-AQRQPRATYLPVELQDD   67 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHH-HHHCTTCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHH-HhcCCCEEEEEeecCCH
Confidence            377888888887765   3444555555 899999887765554433 33344788888888653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.96  E-value=0.45  Score=28.73  Aligned_cols=50  Identities=16%  Similarity=0.050  Sum_probs=32.2

Q ss_pred             eEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           51 VVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +|+=+|+  |.++..+++   ....+|+++|.+++.++......     .+.++.+|..+
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~   54 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-----KATIIHGDGSH   54 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-----SSEEEESCTTS
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-----CCeEEEcCCCC
Confidence            4555665  666655552   22349999999999887655432     35677777654

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=91.89  E-value=1.3  Score=27.85  Aligned_cols=57  Identities=21%  Similarity=0.156  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|+.++.+++.++......   +.++.++.+|+.+.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~   63 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRELEVAH---GGNAVGVVGDVRSL   63 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHT---BTTEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHc---CCcEEEEEcCCCCH
Confidence            56788888866543   233344454 49999999988776654433   33678888888653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.88  E-value=0.73  Score=29.23  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCCh--hHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDS--DSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.| ++..+    ++.+. +|+.++.+.  ...+.........+.++.++.+|+.+.
T Consensus        48 ~~k~vlVTGas~G-IG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~  112 (294)
T 3r3s_A           48 KDRKALVTGGDSG-IGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDE  112 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCH
Confidence            5678888886544 44443    34444 899998863  344444444444455788888887653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.88  E-value=0.99  Score=27.46  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhc-cCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|+ +|.++..++    +.+ .+|++++-++...+........ .+.++.++.+|+.+.
T Consensus         6 ~~~~vlVtGa-sggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   69 (248)
T 2pnf_A            6 QGKVSLVTGS-TRGIGRAIAEKLASAG-STVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSE   69 (248)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCH
Confidence            4567776665 555555554    344 4899999988776655544332 234678888887653

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=91.83  E-value=0.72  Score=28.55  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhH-HHHHHHHhhcc-CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-LELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~-~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++ |.++..++    +.+ .+|+.++.++.. ++...+..... +.++.++.+|+.+.
T Consensus         3 ~~k~vlVTGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   67 (260)
T 1x1t_A            3 KGKVAVVTGST-SGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKG   67 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCH
Confidence            45677766654 44544444    444 489999988776 55544443322 34677888887653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.80  E-value=1.4  Score=27.16  Aligned_cols=57  Identities=25%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++-++..++...+..   +.++.++.+|+.+.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~   67 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKE   67 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEecCCCH
Confidence            56788888876543   2344445544 8999999988776665543   33678888887654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=91.74  E-value=1.3  Score=27.87  Aligned_cols=60  Identities=15%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeC-ChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADL-ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~-s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++.|.   ++..+++.+. +|+.++. ++...+...+..... +.++.++.+|+.+.
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   88 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKP   88 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCH
Confidence            56788888865543   2333444544 9999998 556665555554443 33788888888653

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=91.74  E-value=0.98  Score=28.26  Aligned_cols=60  Identities=22%  Similarity=0.173  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhH-------HHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDS-------LELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.++..       ++.........+.++.++.+|+.+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   74 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREE   74 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            56788888877553   2334445554 89999987642       3333343444444788888888654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.69  E-value=1.3  Score=27.10  Aligned_cols=59  Identities=15%  Similarity=0.110  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .++++|=.|++ |.++..++    +.+ .+|+.++. +++..+...+.....+.++.++.+|+.+.
T Consensus         3 ~~k~~lVTGas-~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   66 (246)
T 3osu_A            3 MTKSALVTGAS-RGIGRSIALQLAEEG-YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADA   66 (246)
T ss_dssp             CSCEEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            34566666654 44444443    444 48888876 44555555555555555788888888653

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.64  E-value=0.63  Score=30.22  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           48 SNKVVADFG-CG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        48 ~~~~vLDlG-~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ++++||=.| +| .|..+..+++...++|++++.+++.++.+++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  194 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM  194 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            678999884 44 56666667764445999999999998888763

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.62  E-value=1.1  Score=27.97  Aligned_cols=57  Identities=23%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.+++.++......   +.++.++.+|+.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~   69 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASV---GRGAVHHVVDLTNE   69 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCH
Confidence            56788888865443   2333444544 8999999988776655544   33677778887653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=91.61  E-value=1.1  Score=27.88  Aligned_cols=58  Identities=14%  Similarity=0.111  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~  107 (115)
                      +++++|=.|++. .++..+    ++.+ .+|+.++.+++..+...+......  ..+.++.+|+.+
T Consensus         9 ~~k~~lVTGas~-gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   72 (267)
T 3t4x_A            9 KGKTALVTGSTA-GIGKAIATSLVAEG-ANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT   72 (267)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC
Confidence            567788777654 444443    3444 499999999888766665554432  267778888765

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=91.61  E-value=0.72  Score=28.49  Aligned_cols=60  Identities=15%  Similarity=0.150  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hc--CCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LL--GADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++. .++..++    +.  ...+|+.++.+++.++...+.....  +.++.++.+|+.+.
T Consensus         5 ~~k~~lVTGas~-gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~   72 (259)
T 1oaa_A            5 GCAVCVLTGASR-GFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE   72 (259)
T ss_dssp             BSEEEEESSCSS-HHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred             CCcEEEEeCCCC-hHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCH
Confidence            456777666554 4444433    31  2459999999988776665554432  33678888888653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.58  E-value=0.3  Score=31.43  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             hcCCCCCCeEEEEcC--CCChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605           43 SFGDVSNKVVADFGC--GCGTLGAAATL-LGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~--G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .....++++||-.|+  |.|.....+++ .+. +|+++|.+++.++.+++
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            334567889999983  46666666664 444 99999999988888765

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.56  E-value=0.37  Score=31.47  Aligned_cols=47  Identities=15%  Similarity=0.084  Sum_probs=34.1

Q ss_pred             hcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           43 SFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .....++++||-.|+  |.|.....+++....+|++++.+++.++.+++
T Consensus       157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            334567889999984  45666666665434599999999998888754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=91.55  E-value=1.5  Score=26.80  Aligned_cols=55  Identities=20%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             CCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           49 NKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++++|=.|++.| ++..    +++.+. +|+.++.+++.++........   ++.++.+|+.+.
T Consensus         3 ~k~vlVTGas~G-IG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~   61 (235)
T 3l6e_A            3 LGHIIVTGAGSG-LGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGN---AVIGIVADLAHH   61 (235)
T ss_dssp             CCEEEEESTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG---GEEEEECCTTSH
T ss_pred             CCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CceEEECCCCCH
Confidence            356777776544 4433    344444 899999999887766655532   578888887653

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.54  E-value=0.34  Score=31.65  Aligned_cols=49  Identities=18%  Similarity=0.068  Sum_probs=35.6

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||-.|+  |.|.....+++....+|++++.+++.++.+++.
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  211 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL  211 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            3345567889998853  356667777754445999999999998888764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.53  E-value=1.5  Score=27.60  Aligned_cols=57  Identities=19%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.+++.+.......   +.++.++.+|+.+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~   85 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GSKAFGVRVDVSSA   85 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CTTEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEecCCCH
Confidence            56788888866443   2333344444 9999999987766554442   33678888887653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=91.48  E-value=1.5  Score=27.00  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+ .+|+.++.++...+...+....   ++.++.+|+.+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~d~   67 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQAISDYLGD---NGKGMALNVTNP   67 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHGG---GEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc---cceEEEEeCCCH
Confidence            56788877766443   233344444 4899999998877666555433   456777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	1e-33
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	9e-32
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-08
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-08
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	7e-07
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	7e-07
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-06
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-06
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-05
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	6e-05
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	8e-05
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	3e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	7e-04
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	9e-04
d1dcta_	324	c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a	0.001
d1g60a_	256	c.66.1.11 (A:) Methyltransferase mboII {Moraxella	0.001
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	0.002
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	0.002
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	0.002
d2c7pa1	327	c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu	0.003
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.004
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	0.004

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  113 bits (284), Expect = 1e-33
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 2   KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGT 61
           + K+L   L  L+ F NPKV LEQY T  + AS +L+ A  S GD+  KVVAD G G G 
Sbjct: 1   RKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGV 59

Query: 62  LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           L   A LLGA +VI +++D +++++  EN  + +        D+     R
Sbjct: 60  LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR 109

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  108 bits (271), Expect = 9e-32
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 1   MKLK-QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC 59
           M +K  LE  L  L+Q  N K  LEQYPT    A+  L    N  G++  + V D G G 
Sbjct: 1   MGIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYN-DGNIGGRSVIDAGTGN 59

Query: 60  GTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           G L   + LLGA+ V A DID D++E A  N       ++F+  D+  +  +
Sbjct: 60  GILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEISGK 107

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 41  ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-LELDID 99
             +     +KVV D GCG G L   A   GA +V+ +D      +       + LE  I 
Sbjct: 28  YQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTIT 87

Query: 100 FVQCDIRNLEW 110
            ++  I  +  
Sbjct: 88  LIKGKIEEVHL 98

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.7 bits (110), Expect = 6e-08
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCD 104
              +KVV D G G G L   A   GA +VI I+  S S        A  L+  +  ++  
Sbjct: 31  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 90

Query: 105 IRNLEWRGKY 114
           +  +E   + 
Sbjct: 91  VEEVELPVEK 100

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 43.8 bits (102), Expect = 7e-07
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
              V D GCG G         G  +   +DI   S+  A   A +++    + F   D  
Sbjct: 25  GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 84

Query: 107 NLEW 110
               
Sbjct: 85  GRHM 88

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (103), Expect = 7e-07
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQ 102
               +K+V D GCG G L   A   GA  VI +D+ S  +E+A E          I  ++
Sbjct: 35  DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVELNGFSDKITLLR 93

Query: 103 CDIRNLEW 110
             + ++  
Sbjct: 94  GKLEDVHL 101

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
           +++V D   G G L     + G  +VIAI+ D  + +   EN    +++  +     D R
Sbjct: 108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 167

Query: 107 NLEWRGKY 114
           +       
Sbjct: 168 DFPGENIA 175

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (95), Expect = 8e-06
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 17/111 (15%)

Query: 18  NPKVE-LEQYP---------TGPHIASRMLYTAENSFGDVSNKVVADFGCGCG-TLGAAA 66
           +P+   L+ Y            P+  S +    +   GD       D G G G  +  AA
Sbjct: 180 HPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDT----FMDLGSGVGNCVVQAA 235

Query: 67  TLLGADQVIAIDIDSDSLELASENAADLELDIDF--VQCDIRNLEWRGKYI 115
              G       +I  D+ +L      +L+       ++ +      +  ++
Sbjct: 236 LECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86
           PT   +   ++  AE    DV      D GCG G +          +V AID + +++  
Sbjct: 16  PTAMEVRCLIMCLAEPGKNDV----AVDVGCGTGGV-TLELAGRVRRVYAIDRNPEAIST 70

Query: 87  ASENA--ADLELDIDFVQCDIRNL 108
              N     L  ++  ++ D    
Sbjct: 71  TEMNLQRHGLGDNVTLMEGDAPEA 94

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELA 87
           P  +S +    +   GD     + D G G G + A          +V A +   +  +LA
Sbjct: 89  PKDSSFIAMMLDVKEGDR----IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA 144

Query: 88  SENAADLELDIDFVQCDIRNLEW 110
             N     L I+ V   +R++  
Sbjct: 145 ESNLTKWGL-IERVTIKVRDISE 166

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-05
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 11/75 (14%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLEL---------- 96
            + +  D G G G +    A          ++      + A     +             
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 97  DIDFVQCDIRNLEWR 111
           +    + D  + EWR
Sbjct: 211 EYTLERGDFLSEEWR 225

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSL 84
              P  A+++++             V + G G G L  +    +G   QVI+ +  +D  
Sbjct: 79  VIYPKDAAQIVHEG----DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA 134

Query: 85  ELASENAADLELD----IDFVQCDIRNLEWR 111
           E A  N +            V  D+ + E  
Sbjct: 135 EHARRNVSGCYGQPPDNWRLVVSDLADSELP 165

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 10/67 (14%), Positives = 15/67 (22%), Gaps = 2/67 (2%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQ 102
           G +    + D G G       A       +   D    + E   +         D     
Sbjct: 48  GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAV 107

Query: 103 CDIRNLE 109
                LE
Sbjct: 108 KFACELE 114

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 48  SNKVVADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSLELASENAADLEL--DIDFVQC 103
               + + G G G + +     L     +  ++ D D+L+ A +N ++     ++   + 
Sbjct: 85  PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS 144

Query: 104 DIRNLEW 110
           DI +   
Sbjct: 145 DIADFIS 151

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 7e-04
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
                   V D  CG G         G   V ++D     L+ A +   +   +  F + 
Sbjct: 52  LRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKW 110

Query: 104 DIRNLEWR 111
            I    W 
Sbjct: 111 VIEEANWL 118

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 35.0 bits (80), Expect = 9e-04
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 41  ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQ---VIAIDIDSDSLELASENAADLELD 97
           EN +    NKV    G G G +G     + A     VI I     S +   +       +
Sbjct: 2   ENYYYCGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE 60

Query: 98  IDFVQCDIRNLE 109
                 D+   E
Sbjct: 61  SSGYAGDVSKKE 72

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 5/60 (8%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           +     G G L       G   + A + D    +    N +        ++ DI  +   
Sbjct: 3   LISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-----KLIKGDISKISSD 57

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89
           N +V D   G GT    A  LG +  I  D++++ +  A+ 
Sbjct: 213 NDLVLDCFMGSGTTAIVAKKLGRN-FIGCDMNAEYVNQANF 252

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 50  KVVADF-GCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           +V+  + G G        + + A  V AID+++ + E+   N          +   I  +
Sbjct: 4   RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGI 59

Query: 109 EWR 111
              
Sbjct: 60  TLE 62

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 47 VSNKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAA 92
          ++ K+V D     G  G   A    A++V   DI  D+ EL   N  
Sbjct: 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVM 90

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQ---VIAIDIDSDSLELASENAADLELDIDFVQ 102
            V+ ++V   G G G +G       A     ++  DI+   LE  +     L   +    
Sbjct: 4   SVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFV 62

Query: 103 CDIRNLEW 110
            D  N E 
Sbjct: 63  VDCSNRED 70

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
             D   G G    A    GA+ V + + D  + E+   N  +        + DI  +  +
Sbjct: 14  FIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK------PEGDITQVNEK 67

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL 84
           N+ V D   G G +  A       +V+A D+  D L
Sbjct: 15 GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDIL 50

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.004
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 8/89 (8%)

Query: 30  PHIASRMLY-------TAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDS 81
           P +  R+ Y                + +   D G G   +       L     +A ++D 
Sbjct: 36  PTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD 95

Query: 82  DSLELASENAADLELDIDFVQCDIRNLEW 110
                A +N     L        +     
Sbjct: 96  MCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.86
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.86
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.76
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.75
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.74
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.73
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.67
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.65
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.63
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.62
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.62
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.61
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.59
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.59
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.59
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.58
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.58
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.57
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.56
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.55
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.53
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.52
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.52
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.52
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.51
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.51
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.51
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.5
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.48
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.48
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.47
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.45
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.45
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.45
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.44
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.44
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.42
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.42
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.42
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.41
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.41
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.4
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.39
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.38
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.36
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.33
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.33
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.31
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.28
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.28
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.28
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.26
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.19
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.17
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.16
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.14
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.12
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.1
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.03
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.01
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.87
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.83
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	98.81
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.76
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.68
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.51
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	98.51
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	98.5
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.48
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.41
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	98.39
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.36
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.3
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.29
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.27
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.23
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.23
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.2
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.15
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.15
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.14
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.07
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.02
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.01
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.99
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.86
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.85
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.82
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.68
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.65
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.5
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.41
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.34
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.22
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.2
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.18
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.16
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.16
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.14
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.01
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	97.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.93
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.86
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.74
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.72
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.57
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.53
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.5
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.45
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.45
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.37
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.36
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.35
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.27
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.24
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.14
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.09
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.96
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.95
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.94
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.87
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.83
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.78
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.77
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.66
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.59
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.51
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.47
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.33
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.21
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.19
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.18
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.15
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.14
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.05
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.97
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.93
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.84
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.78
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.75
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.73
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.64
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.57
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.56
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.5
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.35
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.34
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.34
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.19
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.12
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.11
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.0
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.82
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.46
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.41
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	93.06
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.71
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.65
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.44
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.21
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.14
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	91.87
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.61
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.94
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.8
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	90.73
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	90.64
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	90.63
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.2
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	90.19
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	89.45
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.81
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	88.77
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	88.55
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.42
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	87.31
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	87.23
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	87.22
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	87.21
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.21
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	87.04
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.95
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.79
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	86.14
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.01
d1yf3a1	259	DNA methylase T4DAM {Bacteriophage T4 [TaxId: 1066	85.92
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	85.79
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	85.66
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	85.24
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	85.19
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	83.35
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.05
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	82.68
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	82.29
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	81.63
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	81.59
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.93
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.34

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=1.9e-21  Score=116.93  Aligned_cols=104  Identities=38%  Similarity=0.581  Sum_probs=84.0

Q ss_pred             Cccc-hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeC
Q 033605            1 MKLK-QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI   79 (115)
Q Consensus         1 m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~   79 (115)
                      |+.+ +++..++.+..|.++...++||.++......++..+... ....+++|||+|||+|.+++.++..+..+|+|+|+
T Consensus         1 ~~~k~~l~~~l~~~~~~~~~~~~leQy~T~~~~a~~~~~~~~~~-~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDi   79 (197)
T d1ne2a_           1 MGIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDI   79 (197)
T ss_dssp             CCHHHHHHHHHHTSCCCC--------CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEES
T ss_pred             CcchHHHHHHHhcCCCCCCCCcccccCCCCHHHHHHHHHHHHHc-CCCCCCEEEEeCCCCcHHHHHHHHcCCCccccccc
Confidence            5555 699999999999999999999999999999988766655 55689999999999999999888888779999999


Q ss_pred             ChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           80 DSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        80 s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ++.+++.|++|..    +++++++|+.+++
T Consensus        80 d~~a~~~ar~N~~----~~~~~~~D~~~l~  105 (197)
T d1ne2a_          80 DPDAIETAKRNCG----GVNFMVADVSEIS  105 (197)
T ss_dssp             CHHHHHHHHHHCT----TSEEEECCGGGCC
T ss_pred             CHHHHHHHHHccc----cccEEEEehhhcC
Confidence            9999999999875    6789999988755

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1e-20  Score=114.34  Aligned_cols=107  Identities=37%  Similarity=0.609  Sum_probs=94.1

Q ss_pred             ccchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh
Q 033605            2 KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (115)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~   81 (115)
                      +++.++..++.+..|..+....++|.++.+....++..+.. ....++.+|||+|||+|.+++.++..+..+|+|+|+++
T Consensus         1 ~~~~l~~~l~~~~~f~~~~~~l~qy~Tp~~~a~~~~~~~~~-~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~   79 (201)
T d1wy7a1           1 RKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYS-LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK   79 (201)
T ss_dssp             CCHHHHHHHHTSCCCSSCCGGGTCCCCCHHHHHHHHHHHHH-TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             CchHHHHHHccCCCCCCCCcccccCCCCHHHHHHHHHHHHh-cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH
Confidence            46788999999999999999999999999998888755543 35568899999999999999998888777999999999


Q ss_pred             hHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           82 DSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        82 ~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+++.+++|+...+.+.+++++|+..++
T Consensus        80 ~~~~~a~~N~~~~~~~~~~~~~d~~~~~  107 (201)
T d1wy7a1          80 EAVDVLIENLGEFKGKFKVFIGDVSEFN  107 (201)
T ss_dssp             HHHHHHHHHTGGGTTSEEEEESCGGGCC
T ss_pred             HHHHHHHHHHHHcCCCceEEECchhhhC
Confidence            9999999999988888999999987654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=4.6e-19  Score=109.80  Aligned_cols=78  Identities=21%  Similarity=0.404  Sum_probs=68.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      .+..+.......++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++....+.++++.++|+++++++++|
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence            455555565666778999999999999999998765 999999999999999999988887999999999999998765

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=6.9e-19  Score=108.29  Aligned_cols=76  Identities=21%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~  113 (115)
                      .+.+++.....++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+. ++.++++|++++|+++.
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            3456677788899999999999999999999875 4999999999999999999988776 89999999999998864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4e-18  Score=105.52  Aligned_cols=84  Identities=17%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      ..+...+..+...+...++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....+.  +++++++|++++
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            345666777778878888999999999999999999875446999999999999999999988876  699999999998


Q ss_pred             cccCCC
Q 033605          109 EWRGKY  114 (115)
Q Consensus       109 ~~~~~f  114 (115)
                      ...++|
T Consensus        96 ~~~~~f  101 (245)
T d1nkva_          96 VANEKC  101 (245)
T ss_dssp             CCSSCE
T ss_pred             cccCce
Confidence            655444

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=3.1e-18  Score=104.87  Aligned_cols=73  Identities=21%  Similarity=0.261  Sum_probs=63.6

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      .+++..+..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. +++++++|++++|+++
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccc
Confidence            445556777889999999999999999998754 999999999999999999888776 8999999999999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.75  E-value=4e-18  Score=107.45  Aligned_cols=78  Identities=10%  Similarity=-0.021  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++..+....+..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....++  +++++++|++++|+++
T Consensus        54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~  133 (282)
T d2o57a1          54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED  133 (282)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence            34455555556778899999999999999999975345999999999999999999988776  7999999999999886

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.74  E-value=1.3e-17  Score=103.08  Aligned_cols=67  Identities=22%  Similarity=0.263  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+.+++++++|+.+++++++|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhcccccc
Confidence            3567999999999999999998865 999999999999999999888777999999999999887664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=5e-17  Score=98.88  Aligned_cols=75  Identities=27%  Similarity=0.408  Sum_probs=62.5

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      ++.++..+ ..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+.++.++++|++++++++.
T Consensus        27 ~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~  101 (226)
T d1ve3a1          27 LEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK  101 (226)
T ss_dssp             HHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTT
T ss_pred             HHHHHHHh-cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccccCc
Confidence            34444432 23667999999999999999998755 99999999999999999988777788999999999998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=2.8e-17  Score=98.06  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=62.3

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~  111 (115)
                      ..++..+...++++|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++++...+.  +++++++|+.+...+
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~   97 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK   97 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc
Confidence            33444556678999999999999999999876 45999999999999999999999886  899999998876544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=1.4e-16  Score=95.75  Aligned_cols=68  Identities=25%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCCC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f  114 (115)
                      ..++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....+. ++++...|+..+++++.|
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f   96 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY   96 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence            34667999999999999999998865 999999999999999999988887 799999999998887654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=7e-17  Score=100.37  Aligned_cols=81  Identities=28%  Similarity=0.390  Sum_probs=64.5

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      |.+..+.+.+++-..+.... .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|++|+..++.++.++++|+
T Consensus        99 FGTG~H~TT~l~l~~l~~~~-~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~  176 (254)
T d2nxca1          99 FGTGHHETTRLALKALARHL-RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL  176 (254)
T ss_dssp             ---CCSHHHHHHHHHHHHHC-CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cCccccchhhHHHHHHHhhc-CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccc
Confidence            44666666666555555433 4788999999999999998888764 899999999999999999999888889999987


Q ss_pred             cCC
Q 033605          106 RNL  108 (115)
Q Consensus       106 ~~~  108 (115)
                      .+.
T Consensus       177 ~~~  179 (254)
T d2nxca1         177 EAA  179 (254)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.1e-17  Score=98.85  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~  112 (115)
                      ..++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|++++...+. +++++++|++++++++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~  125 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP  125 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccc
Confidence            345678999999999999998765566999999999999999999887766 7899999999998765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=5.1e-16  Score=94.81  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++.+|||+|||+|..+..+++.   +..+|+|+|+|+.|++.|+++....+.  ++++..+|+.++++.+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~  108 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN  108 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCS
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccccc
Confidence            36779999999999999999863   456999999999999999999877665  7888899998887654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.1e-16  Score=97.72  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=79.8

Q ss_pred             hhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHH
Q 033605            6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSL   84 (115)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~   84 (115)
                      ++..+.....+.....--.....|+..++.+++.++.... .++.+|||+|||+|..++.++. .+..+|+++|+|+.++
T Consensus        67 lqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al  145 (274)
T d2b3ta1          67 IAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV  145 (274)
T ss_dssp             HHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH
T ss_pred             hhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHH
Confidence            3444444444443334444567788889999988877644 4667899999999999999985 5668999999999999


Q ss_pred             HHHHHHhhccCC-ceeEEEccccC
Q 033605           85 ELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        85 ~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      +.|++|+...+. +++++++|+.+
T Consensus       146 ~~A~~Na~~~~~~~v~~~~~d~~~  169 (274)
T d2b3ta1         146 SLAQRNAQHLAIKNIHILQSDWFS  169 (274)
T ss_dssp             HHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             hHHHHHHHHhCcccceeeeccccc
Confidence            999999999988 89999999865

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=2.4e-16  Score=94.04  Aligned_cols=69  Identities=16%  Similarity=0.053  Sum_probs=57.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC-------------CceeEEEccccC
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE-------------LDIDFVQCDIRN  107 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~v~~~~~d~~~  107 (115)
                      ...+...++.+|||+|||+|+.+..+++.+. +|+|+|+|+.|++.|+++....+             .++.++++|+.+
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            3344667889999999999999999998866 99999999999999999876542             246788888887


Q ss_pred             Ccc
Q 033605          108 LEW  110 (115)
Q Consensus       108 ~~~  110 (115)
                      ++.
T Consensus        92 l~~   94 (201)
T d1pjza_          92 LTA   94 (201)
T ss_dssp             STH
T ss_pred             ccc
Confidence            764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=8.2e-16  Score=96.82  Aligned_cols=80  Identities=26%  Similarity=0.346  Sum_probs=66.0

Q ss_pred             HHHHHHHHhc-CCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           35 RMLYTAENSF-GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        35 ~~~~~~~~~~-~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ..++.+++.. ...++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....+.+++++++|+++++++
T Consensus        13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~   92 (281)
T d2gh1a1          13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   92 (281)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc
Confidence            3445554443 3457889999999999999999864 3 35899999999999999999988888999999999999987


Q ss_pred             CCC
Q 033605          112 GKY  114 (115)
Q Consensus       112 ~~f  114 (115)
                      ++|
T Consensus        93 ~~f   95 (281)
T d2gh1a1          93 DKY   95 (281)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=1.1e-15  Score=96.45  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .+...+.++.+++.+...++.+|||||||+|..++.+++...++|+|+.+|+..++.++++....+.  ++++..+|..+
T Consensus        44 ~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (285)
T d1kpga_          44 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  123 (285)
T ss_dssp             HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence            4556778899999999999999999999999999999864356999999999999999999888776  89999999987


Q ss_pred             Ccc
Q 033605          108 LEW  110 (115)
Q Consensus       108 ~~~  110 (115)
                      ++.
T Consensus       124 ~~~  126 (285)
T d1kpga_         124 FDE  126 (285)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.64  E-value=9.3e-16  Score=95.37  Aligned_cols=78  Identities=13%  Similarity=0.019  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ....+.++..++...+.+|||+|||+|+.+..++.....+|+++|+|+.|++.|+++....+ +++++++|++++++++
T Consensus        79 ~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCCCCS
T ss_pred             HHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc-cceeEEccccccccCC
Confidence            34455666676767788999999999999999885445589999999999999998876544 6899999999999875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1.4e-15  Score=95.69  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .....+.++.+++.+...++.+|||||||+|.++..+++...++|+|+|+|+.+++.|+++....+.  ++.+...|..+
T Consensus        34 ~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          34 EEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence            3455677888999988889999999999999999999865445999999999999999999998887  67888888776


Q ss_pred             Cc
Q 033605          108 LE  109 (115)
Q Consensus       108 ~~  109 (115)
                      ++
T Consensus       114 ~~  115 (280)
T d2fk8a1         114 FA  115 (280)
T ss_dssp             CC
T ss_pred             hc
Confidence            54

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=8.3e-16  Score=94.47  Aligned_cols=71  Identities=21%  Similarity=0.314  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ..+..++.... .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++...     .++++|++++++++
T Consensus        30 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~-----~~~~~~~~~l~~~~  100 (246)
T d2avna1          30 RLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPS  100 (246)
T ss_dssp             HHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCT
T ss_pred             HHHHHHHHHhc-CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccccc-----cccccccccccccc
Confidence            33444343323 3677999999999999999998755 999999999999999987532     46789999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.62  E-value=1.5e-15  Score=94.24  Aligned_cols=64  Identities=22%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      .++.+|||+|||+|..+..+++.+..+|+|+|+|+.|++.|+.+....+.  ++.+.++|+...++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~   88 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM   88 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc
Confidence            36789999999999999999887777999999999999999999877655  79999999976664

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=2.9e-15  Score=89.70  Aligned_cols=68  Identities=26%  Similarity=0.360  Sum_probs=58.8

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      .+++.+...++.+|||+|||+|.+++.+++.. .+|+++|+|+.+++.+++++..++.   +++++.+|+.+
T Consensus        43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~  113 (194)
T d1dusa_          43 ILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred             HHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh
Confidence            35566677788999999999999999998764 4999999999999999999887765   58999999876

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.61  E-value=2.8e-15  Score=91.56  Aligned_cols=64  Identities=9%  Similarity=0.217  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY  114 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  114 (115)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++...   ++.++++|+++++++++|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~---~~~~~~~~~~~~~~~~~f   82 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQLPRRY   82 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCCCSSCE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc---cccccccccccccccccc
Confidence            4678999999999999999987754 899999999999999987643   789999999998887654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.5e-15  Score=91.36  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc------------------
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------------------   94 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------   94 (115)
                      ...+++.+.......++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.+++.....                  
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            344444444444556788999999999999999999876 9999999999999999876532                  


Q ss_pred             CCceeEEEccccCCccc
Q 033605           95 ELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        95 ~~~v~~~~~d~~~~~~~  111 (115)
                      +.+++++++|+.+++..
T Consensus       109 ~~~v~~~~~d~~~l~~~  125 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRT  125 (229)
T ss_dssp             TSSEEEEESCGGGGGGS
T ss_pred             CCcEEEEEcchhhcccc
Confidence            23789999998877643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=4e-15  Score=90.05  Aligned_cols=69  Identities=13%  Similarity=0.060  Sum_probs=58.9

Q ss_pred             hcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      .++..++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++....+ |+.++.+|+...+...
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d~~~~~~~~  120 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFDASKPWKYS  120 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSCTTCGGGTT
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-CceEEEeeccCccccc
Confidence            346678899999999999999999974 55699999999999999999987765 8999999988766543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.3e-15  Score=91.89  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ...+...+.... ..++.+|||+|||+|.++..+++. +...++|+|+|+.|++.|+++..    ++.++++|++++|++
T Consensus        70 ~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~----~~~~~~~d~~~l~~~  144 (268)
T d1p91a_          70 RDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVASSHRLPFS  144 (268)
T ss_dssp             HHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTSCSBC
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc----cccceeeehhhccCC
Confidence            444444455443 347789999999999999999965 45699999999999999987654    789999999999988


Q ss_pred             CC
Q 033605          112 GK  113 (115)
Q Consensus       112 ~~  113 (115)
                      +.
T Consensus       145 ~~  146 (268)
T d1p91a_         145 DT  146 (268)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=97.41  Aligned_cols=84  Identities=11%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc----------CCc
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL----------ELD   97 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~   97 (115)
                      ..+.....+..+++.....++++|||+|||+|..+..+++ .+..+++|+|+|+.+++.|+++..+.          ..+
T Consensus       132 ~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~  211 (328)
T d1nw3a_         132 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE  211 (328)
T ss_dssp             CCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             hhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence            3445666777788888888899999999999999999985 56678999999999999998876542          127


Q ss_pred             eeEEEccccCCcccC
Q 033605           98 IDFVQCDIRNLEWRG  112 (115)
Q Consensus        98 v~~~~~d~~~~~~~~  112 (115)
                      ++++++|+.+.++.+
T Consensus       212 i~~~~gd~~~~~~~~  226 (328)
T d1nw3a_         212 YTLERGDFLSEEWRE  226 (328)
T ss_dssp             EEEEECCTTSHHHHH
T ss_pred             eEEEECccccccccc
Confidence            999999999887654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=9.8e-15  Score=92.21  Aligned_cols=79  Identities=11%  Similarity=0.066  Sum_probs=67.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      -.....+.++.+++.+...++.+|||||||+|.++..+++...++|+|+++|+++++.++++....+.  .+++...|..
T Consensus        42 L~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          42 LEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence            34556778888999999999999999999999999999854345999999999999999999998877  6788777765


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      .
T Consensus       122 ~  122 (291)
T d1kpia_         122 E  122 (291)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.58  E-value=7.4e-15  Score=90.23  Aligned_cols=78  Identities=14%  Similarity=0.196  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG  112 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~  112 (115)
                      ...+++.+++.....++++|||+|||+|.+|..+++.+ .+|+++|+++.+++.++++....+ +++++++|+.++++++
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~-n~~i~~~D~l~~~~~~   83 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQVLNKDILQFKFPK   83 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEEECCCGGGCCCCS
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhccc-chhhhhhhhhhccccc
Confidence            45567777777777889999999999999999999874 599999999999999998876544 8999999999998764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=6.8e-15  Score=94.36  Aligned_cols=66  Identities=29%  Similarity=0.462  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      .++++|||+|||+|.+++.+++.++.+|+|+|.|+ ++..++++....+.  +++++++|++++++++.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~  104 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSS
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCccc
Confidence            47889999999999999999998888999999997 67888888877776  89999999999998763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=91.61  Aligned_cols=77  Identities=23%  Similarity=0.254  Sum_probs=60.0

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ...+.+.......++++|||+|||+|.+++.+++.++.+|+|+|.|+.+.. +++.....+.  +++++++|+++++++.
T Consensus        22 ~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~  100 (311)
T d2fyta1          22 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPV  100 (311)
T ss_dssp             HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCcc
Confidence            333444444344578899999999999999999988889999999998765 4444444444  8999999999998774

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=2.3e-14  Score=86.89  Aligned_cols=78  Identities=19%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR  111 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~  111 (115)
                      .++..+++.+...++++|||+|||+|+.+..+++. + ..+|+++|+++.+++.|+++....+. |+.++++|+.+..+.
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~  141 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE  141 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence            44555666667789999999999999999999863 3 45899999999999999999998887 899999998765544


Q ss_pred             C
Q 033605          112 G  112 (115)
Q Consensus       112 ~  112 (115)
                      +
T Consensus       142 ~  142 (213)
T d1dl5a1         142 F  142 (213)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.3e-14  Score=92.64  Aligned_cols=65  Identities=29%  Similarity=0.369  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      .++++|||+|||+|.+++.+++.++.+|+|+|.|+.+ ..++++...++.  +++++++|+++++++.
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~   98 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPV   98 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccccc
Confidence            3788999999999999999999887899999999864 666666666665  7999999999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=3.3e-14  Score=87.10  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.++..++.+|||+|||+|..+..+++. +...|+|+|+|+.|++.++.++...+ ++.++.+|....+
T Consensus        68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-ni~~i~~d~~~~~  135 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-NIIPILGDANKPQ  135 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-TEEEEECCTTCGG
T ss_pred             HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-ccceEEEeeccCc
Confidence            4556778899999999999999999975 45699999999999999999877655 7788888877654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.52  E-value=1.3e-14  Score=83.83  Aligned_cols=62  Identities=13%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .++.+|||+|||+|.++++++..++.+|+++|.++.+++.+++++...+.  +++++++|+.++
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~   76 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA   76 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc
Confidence            47889999999999999999888888999999999999999999998887  699999998653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.52  E-value=2.8e-14  Score=85.96  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      +...|||||||+|..+..+|+ .+...++|+|+++.++..+.++....++ |+.++++|+..+.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~   92 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT   92 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh
Confidence            345899999999999999995 5678999999999999999999999888 9999999987654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=1.6e-14  Score=89.91  Aligned_cols=67  Identities=22%  Similarity=0.302  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~  113 (115)
                      .++.+|||+|||+|.+++.+++.+.++|+++|++|.+++.+++|+..++.  +++++++|+.+++....
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~  174 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENI  174 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCC
Confidence            37889999999999999999987777999999999999999999999887  69999999988776543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=5.2e-14  Score=87.60  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhcc--C--CceeEEEccccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL--E--LDIDFVQCDIRN  107 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~--~~v~~~~~d~~~  107 (115)
                      ...+..++..+...++.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++++...  .  .++.++++|+.+
T Consensus        82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            344555666778889999999999999999999964  3469999999999999999988764  1  289999999998


Q ss_pred             CcccCC
Q 033605          108 LEWRGK  113 (115)
Q Consensus       108 ~~~~~~  113 (115)
                      .++++.
T Consensus       162 ~~~~~~  167 (264)
T d1i9ga_         162 SELPDG  167 (264)
T ss_dssp             CCCCTT
T ss_pred             ccccCC
Confidence            887764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.1e-14  Score=87.12  Aligned_cols=75  Identities=8%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      +...+.+.+..... .++.+|||||||+|..+..+++.+..+++|+|+|+.+++.|+++....+.++.++.+++..
T Consensus        38 w~~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  112 (229)
T d1zx0a1          38 WETPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED  112 (229)
T ss_dssp             GGHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccc
Confidence            33444444444433 4788999999999999999998766699999999999999999988777677888777543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=5.2e-14  Score=87.06  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE  109 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~  109 (115)
                      ..++......++.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++++...+.  ++++..+|+.+..
T Consensus        75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            44556667788999999999999999999964  456999999999999999999987644  8999999998763

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.50  E-value=9.8e-14  Score=83.56  Aligned_cols=62  Identities=21%  Similarity=0.316  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~  109 (115)
                      ....|||||||+|.++..+|+ .+...++|+|+++.++..|.++....++ |+.++++|+.++.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~   94 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT   94 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh
Confidence            445899999999999999996 5678999999999999999999998888 9999999998764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=1.1e-13  Score=86.45  Aligned_cols=102  Identities=22%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             hhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHH
Q 033605            6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE   85 (115)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~   85 (115)
                      ++..+.....|.....--.....|+..++.+++.+..........+++|+|||+|..+..++..+..+|+++|+|+.++.
T Consensus        68 l~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~  147 (271)
T d1nv8a_          68 LHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVE  147 (271)
T ss_dssp             HHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHH
T ss_pred             hhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHH
Confidence            34444554444444444455678888889898888876555566799999999999999998777789999999999999


Q ss_pred             HHHHHhhccCC--ceeEEEccccC
Q 033605           86 LASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        86 ~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .|++|+..++.  ++.+..+|+.+
T Consensus       148 ~A~~Na~~~~~~~~~~i~~~~~~~  171 (271)
T d1nv8a_         148 IARKNAERHGVSDRFFVRKGEFLE  171 (271)
T ss_dssp             HHHHHHHHTTCTTSEEEEESSTTG
T ss_pred             HHHHHHHHcCCCceeEEeeccccc
Confidence            99999999887  57778888765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.48  E-value=3e-13  Score=82.39  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      -.+++.+...++++|||+|||+|+++..+++.. .+|+++|+++.+++.|+++..... |+.++.+|...
T Consensus        60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~-nv~~~~~d~~~  127 (224)
T d1vbfa_          60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTL  127 (224)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGG
T ss_pred             HHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhccc-ccccccCchhh
Confidence            344556677799999999999999999998874 599999999999999999877543 89999999754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.47  E-value=1.7e-13  Score=83.03  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      ++..+++.+...++.+|||+|||+|+.+..+++....+|+++|.++.+++.++++....+. |+.++++|..+
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~  138 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK  138 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcccc
Confidence            3344455556778999999999999999999875335899999999999999999999987 99999999765

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.6e-13  Score=81.35  Aligned_cols=78  Identities=18%  Similarity=0.182  Sum_probs=62.7

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      +...+.+.++..+...   ..+.+|||++||+|.++++++..++.+|+.||.++.+++.+++++...+. +++++++|+.
T Consensus        26 t~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~  102 (183)
T d2fpoa1          26 TTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM  102 (183)
T ss_dssp             -CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccc
Confidence            3344445555544433   36789999999999999999998888999999999999999999988776 8999999976


Q ss_pred             CC
Q 033605          107 NL  108 (115)
Q Consensus       107 ~~  108 (115)
                      ++
T Consensus       103 ~~  104 (183)
T d2fpoa1         103 SF  104 (183)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=6.1e-13  Score=85.98  Aligned_cols=82  Identities=17%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      ++.+....+.+++.+.+.....++.+|||+.||+|.+++.+++. .++|+|+|+++.+++.|++++..++. |++++.++
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~  268 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN  268 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecc
Confidence            35566778888888888877778889999999999999999886 45999999999999999999999998 99999999


Q ss_pred             ccCC
Q 033605          105 IRNL  108 (115)
Q Consensus       105 ~~~~  108 (115)
                      +++.
T Consensus       269 ~~~~  272 (358)
T d1uwva2         269 LEED  272 (358)
T ss_dssp             TTSC
T ss_pred             hhhh
Confidence            8753

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.45  E-value=3.9e-15  Score=91.94  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=66.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +.-....+++.+++.+...++++|||+|||+|.+|..+++.+ .+|+++|+++.+++.++++....+ +++++++|+.++
T Consensus        10 nFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~~-n~~ii~~D~l~~   87 (245)
T d1yuba_          10 NFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNT-RVTLIHQDILQF   87 (245)
T ss_dssp             CBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCS-EEEECCSCCTTT
T ss_pred             cccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhcc-chhhhhhhhhcc
Confidence            333344555566666677788999999999999999999874 599999999999988877665443 899999999999


Q ss_pred             cccC
Q 033605          109 EWRG  112 (115)
Q Consensus       109 ~~~~  112 (115)
                      +++.
T Consensus        88 ~~~~   91 (245)
T d1yuba_          88 QFPN   91 (245)
T ss_dssp             TCCC
T ss_pred             cccc
Confidence            8875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3e-14  Score=89.91  Aligned_cols=48  Identities=21%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      ..+.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++....+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~  102 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRR  102 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcc
Confidence            3567999999999999999998765 99999999999999999876544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=5.4e-13  Score=83.18  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .....++..+...++.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++++...+.  ++.+...|+..
T Consensus        90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  166 (266)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence            44555667778889999999999999999999964  346999999999999999999998886  78888888643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=5.6e-13  Score=78.20  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=58.9

Q ss_pred             CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      ++...+.+.++.++...  ..++.+|||+|||+|.++++++..+. +++++|.++.+++.+++++...+.+..+...+.
T Consensus        22 pt~~~v~e~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~   97 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV   97 (171)
T ss_dssp             CCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred             CCcHHHHHHHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh
Confidence            34455556666666554  24778999999999999999888765 899999999999999999998877445554443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.1e-13  Score=81.09  Aligned_cols=68  Identities=21%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC------ceeEEEccccCCcccC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL------DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~~~~  112 (115)
                      ...++.+|||+|||+|+.+..+++.  +..+|+++|+++++++.|++++...+.      ++.++.+|+.....++
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~  148 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE  148 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchh
Confidence            3457889999999999999998864  345999999999999999999876542      6889999987655543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.42  E-value=2.6e-13  Score=80.41  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .++.+|||++||+|.++++++..++.+|+++|.++.+++.+++++...+.  +++++++|+.+
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~  102 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  102 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh
Confidence            47889999999999999999999888999999999999999999987766  79999999754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-12  Score=82.22  Aligned_cols=80  Identities=11%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW  110 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~  110 (115)
                      ...+++.+++.....++++|||+|+|+|.+|..+++.+ ++|+++|+++.++...++.......  +++++.+|+.++++
T Consensus         6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1           6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence            34556666677677788999999999999999999875 4999999999999999998876544  89999999999887


Q ss_pred             cCC
Q 033605          111 RGK  113 (115)
Q Consensus       111 ~~~  113 (115)
                      +..
T Consensus        85 ~~~   87 (278)
T d1zq9a1          85 PFF   87 (278)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=5.4e-13  Score=80.15  Aligned_cols=55  Identities=15%  Similarity=0.256  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (115)
                      ++.+|||+|||+|.++..++     +++|+|+|+.|++.++++      ++.++++|++++++++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~   90 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDE   90 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTT
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------ccccccccccccccccc
Confidence            45689999999999887763     468999999999999874      57899999999998763

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=6.6e-13  Score=79.14  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=62.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++.+++.+...++.++||++||+|.++..+++ .+..+|+|+|.++.|++.++++...++.++.++++++.+++
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~   85 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD   85 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHH
Confidence            344445555666889999999999999999986 45679999999999999999999888878999999887653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.2e-13  Score=87.85  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      .++.....+..+++.....++++|||||||+|..++.++. .++++++|+|+|+.+++.|+.+...
T Consensus       197 YGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         197 YGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             CCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            3566777788888888888999999999999999999985 5667999999999999999998765

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.40  E-value=1.9e-12  Score=80.12  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=58.6

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ...++..+......+|||||||+|.++..+++ .+...++++|+ +++++.++++....+.  +++++.+|+.+
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~  141 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE  141 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh
Confidence            34555666666778999999999999999996 55679999998 6799999999888776  89999999865

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=1.2e-12  Score=79.90  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             HhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           42 NSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +.+...++.+|||+|||+|..+..+++.  +...|+|+|+++.|++.++.++...+ ++..+..|+...
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-~~~~i~~d~~~~  134 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKP  134 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TEEEEECCTTCG
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-CceEEEEECCCc
Confidence            4446678999999999999999999974  34699999999999999999887655 677777777543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3.6e-13  Score=83.32  Aligned_cols=76  Identities=13%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~  111 (115)
                      ...++.+++.....+++.|||+|||+|.+|..+++.+ .+|+++|+++.+++..+......+ +++++++|+.++++.
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~-~~~ii~~D~l~~~~~   82 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGGCCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhcc-chhHHhhhhhhhccc
Confidence            4455566666666788999999999999999999874 599999999999999987554333 899999999987654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=1.4e-12  Score=83.36  Aligned_cols=61  Identities=28%  Similarity=0.302  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      .++.+|||+|||+|.+++.++..++.+|+++|+|+.+++.+++|+..++.  +++++++|+.+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~  206 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  206 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh
Confidence            36789999999999999999988777999999999999999999999987  78999999754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.33  E-value=4e-12  Score=80.52  Aligned_cols=60  Identities=22%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      .++.+|||++||+|.+++.++..++ +|++||.|+.+++.|++|...++.   +++++++|+.+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~  193 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK  193 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH
Confidence            3678999999999999999988765 899999999999999999987765   58999999854

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.2e-12  Score=79.68  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=60.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhcc------------CCceeEE
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL------------ELDIDFV  101 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~v~~~  101 (115)
                      -+..++..+...++.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++++...            ..|+++.
T Consensus        86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            3445566667889999999999999999999963  3469999999999999999988743            1279999


Q ss_pred             EccccCCc
Q 033605          102 QCDIRNLE  109 (115)
Q Consensus       102 ~~d~~~~~  109 (115)
                      ++|+.+..
T Consensus       166 ~~di~~~~  173 (324)
T d2b25a1         166 HKDISGAT  173 (324)
T ss_dssp             ESCTTCCC
T ss_pred             ecchhhcc
Confidence            99987653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=2.1e-12  Score=82.37  Aligned_cols=76  Identities=21%  Similarity=0.233  Sum_probs=60.3

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~  106 (115)
                      +......+..+.+...   .++.+|||++||+|.+++.++. ++.+|+++|+|+.+++.+++++..++. +++++++|+.
T Consensus       128 tG~flDqr~~r~~~~~---~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~  203 (318)
T d1wxxa2         128 TGAYLDQRENRLYMER---FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAF  203 (318)
T ss_dssp             CCCCGGGHHHHHHGGG---CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHH
T ss_pred             cccchhhhhhHHHHHH---hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHH
Confidence            3333344444443332   3788999999999999998876 456999999999999999999999998 8999999975


Q ss_pred             C
Q 033605          107 N  107 (115)
Q Consensus       107 ~  107 (115)
                      +
T Consensus       204 ~  204 (318)
T d1wxxa2         204 D  204 (318)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.6e-13  Score=81.69  Aligned_cols=49  Identities=12%  Similarity=0.074  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            4677999999999999888876666689999999999999999877554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.28  E-value=2.3e-11  Score=75.33  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG  112 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~  112 (115)
                      ...+++.++.....+|||||||+|.++..+++ ++..+++++|+ |+++..++++....+.  ++.++.+|+.+ +++.
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~  146 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV  146 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cccc
Confidence            34455555556678999999999999999996 55679999997 7899999998887766  79999999875 4443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.2e-11  Score=74.50  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~  106 (115)
                      +..++||+|||+|..++.++. .+..+++|+|+|+++++.|++|+..+++  ++.+++.+..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~  122 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  122 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccH
Confidence            345899999999999999885 4567999999999999999999999887  6888776543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.26  E-value=1.9e-11  Score=77.80  Aligned_cols=61  Identities=20%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~  107 (115)
                      .++.+|||++||+|.+++.++..++.+|+++|+|+.+++.+++|...++.   +++++++|+.+
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~  206 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD  206 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH
Confidence            47889999999999999998887778999999999999999999987775   68999999853

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=5.8e-11  Score=72.14  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc----C---CCeEEEEeCChhHHHHHHHHhhcc-----CC-ceeEEEccccCC
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL----G---ADQVIAIDIDSDSLELASENAADL-----EL-DIDFVQCDIRNL  108 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~----~---~~~v~~vD~s~~~~~~a~~~~~~~-----~~-~v~~~~~d~~~~  108 (115)
                      ...++.+|||+|||+|+.+..+++.    +   ..+|+++|+++++++.++++....     +. |+.++++|..+.
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~  153 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG  153 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc
Confidence            3457889999999999999888753    1   248999999999999999886543     22 899999997653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.3e-10  Score=74.08  Aligned_cols=90  Identities=17%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             ccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc------CCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~------~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      ....+.+|......+++.+.......++.+|||+|||+|.+...+...      ...+++|+|+++.++..|+.+....+
T Consensus        91 ~~g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          91 QVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cCCeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            345577888888777766666555567789999999999999887631      12479999999999999999888777


Q ss_pred             CceeEEEccccCCccc
Q 033605           96 LDIDFVQCDIRNLEWR  111 (115)
Q Consensus        96 ~~v~~~~~d~~~~~~~  111 (115)
                      .+..+.++|.......
T Consensus       171 ~~~~~~~~d~~~~~~~  186 (328)
T d2f8la1         171 QKMTLLHQDGLANLLV  186 (328)
T ss_dssp             CCCEEEESCTTSCCCC
T ss_pred             hhhhhhcccccccccc
Confidence            7778888886554433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=6.1e-11  Score=70.05  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=58.6

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEcc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCD  104 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d  104 (115)
                      +...+.+.++..+...   ..+.+|||+.||+|.++++++.+++.+|+.||.+..+++.+++++...+.   ...+...|
T Consensus        26 t~~~vrealFn~l~~~---~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          26 TGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             --CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             CcHHHHHHHHHHhhhh---cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            4444555555555433   26779999999999999999999999999999999999999999987765   45666666


Q ss_pred             c
Q 033605          105 I  105 (115)
Q Consensus       105 ~  105 (115)
                      +
T Consensus       103 ~  103 (183)
T d2ifta1         103 S  103 (183)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2.8e-10  Score=68.30  Aligned_cols=107  Identities=15%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             hhhhhhhhcccCCCCccccccCCCchh-hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChh
Q 033605            5 QLESVLGDLEQFSNPKVELEQYPTGPH-IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSD   82 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~   82 (115)
                      .++.+.+.+..|.. ..+.-...+... +...+++.+. ..+..++.+++|+|+|.|.-++.++ ..+..+++.+|.+..
T Consensus        23 ~L~~y~~ll~~~N~-~~NLts~~~~~~~~~rHi~DSl~-~~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~K  100 (207)
T d1jsxa_          23 QLIAYVNMLHKWNK-AYNLTSVRDPNEMLVRHILDSIV-VAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK  100 (207)
T ss_dssp             HHHHHHHHHHHHC-------------CHHHHHHHHHHH-HGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH
T ss_pred             HHHHHHHHHHHhCC-ceeeEECCCHHHHHHHHhcchHh-hhhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchH
Confidence            34455555555544 222222333333 3344444443 3344567899999999999999998 466679999999999


Q ss_pred             HHHHHHHHhhccCC-ceeEEEccccCCcccCC
Q 033605           83 SLELASENAADLEL-DIDFVQCDIRNLEWRGK  113 (115)
Q Consensus        83 ~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~  113 (115)
                      .+...+......+. |+++++..++++....+
T Consensus       101 K~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~  132 (207)
T d1jsxa_         101 RVRFLRQVQHELKLENIEPVQSRVEEFPSEPP  132 (207)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEECCTTTSCCCSC
T ss_pred             HHHHHHHHHHHcCCcceeeeccchhhhccccc
Confidence            99999999999998 89999999998765443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=6.9e-11  Score=71.40  Aligned_cols=73  Identities=11%  Similarity=0.242  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      ..-+++..++..   .++.+|||+|||+|..++.+++.  ...+++++|+++.+++.++.++...+.  +++++.+|+.+
T Consensus        43 ~~G~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          43 AKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence            333445444443   37789999999999999999963  346999999999999999999998887  79999999865

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=72.00  Aligned_cols=50  Identities=14%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ...++.+|||+|||+|.++...+.....+|+|+|+|+.|++.++++....
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcC
Confidence            34578899999999998876666444569999999999999999887643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.5e-10  Score=72.20  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             CCeEEEEcCCCChHHHHHHhc-----C--CCeEEEEeCChhHHHHHHHHhhcc
Q 033605           49 NKVVADFGCGCGTLGAAATLL-----G--ADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~-----~--~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      +.+|||+|||+|.++..++..     +  ..+++|+|+|+.|++.+++++...
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~   93 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI   93 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc
Confidence            347999999999998877632     2  236899999999999999987654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.4e-10  Score=67.01  Aligned_cols=71  Identities=20%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      -+++..+...   .++++|||+|||+|+.+..+++. + ..+++++|++++..+.|++++...+.  +++++.+|+.+
T Consensus        48 g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          48 AQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             HHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             HHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            4444444433   47889999999999999999963 2 46999999999999999999998877  79999998744

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.87  E-value=4.9e-09  Score=63.63  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  107 (115)
                      -+++..+...   .++++|||+|+++|+.++.+++ .+ ..+++.+|.+++..+.|++++...+.  +++++.+++.+
T Consensus        48 g~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          48 GQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            3445444443   3778999999999999999995 33 46999999999999999999998887  79999998853

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=7.7e-09  Score=60.78  Aligned_cols=68  Identities=21%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.+++.+...++.+++|..+|.|..+..+++.++ +|+|+|.++.++..+++...   .++.++++++.++
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~~---~~~~~~~~~f~~~   74 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLHL---PGLTVVQGNFRHL   74 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC---TTEEEEESCGGGH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhccc---cceeEeehHHHHH
Confidence            44555555667899999999999999999998644 99999999999999987532   2788888877654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.8e-08  Score=64.01  Aligned_cols=82  Identities=12%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             CCCchhhHHHHHHHHH--HhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEE
Q 033605           26 YPTGPHIASRMLYTAE--NSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQ  102 (115)
Q Consensus        26 ~~~~~~~~~~~~~~~~--~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~  102 (115)
                      |.........+++.+.  ......++.+|||+|+|.|.+|..+++. ...+++++|+++......++....  .++++++
T Consensus        19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~--~~~~ii~   96 (322)
T d1i4wa_          19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG--SPLQILK   96 (322)
T ss_dssp             CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT--SSCEEEC
T ss_pred             ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC--CCcEEEe
Confidence            3344444444444431  1112235678999999999999999865 456999999999999999887642  3789999


Q ss_pred             ccccCCc
Q 033605          103 CDIRNLE  109 (115)
Q Consensus       103 ~d~~~~~  109 (115)
                      +|+..+.
T Consensus        97 ~D~l~~~  103 (322)
T d1i4wa_          97 RDPYDWS  103 (322)
T ss_dssp             SCTTCHH
T ss_pred             Cchhhcc
Confidence            9987653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.76  E-value=9e-09  Score=61.78  Aligned_cols=71  Identities=20%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      ||.++...+++    .+...++.+|||+|||+|.+...+.+ . ....++|+|+++.++..++        +..++++|.
T Consensus         3 TP~~i~~~m~~----l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--------~~~~~~~~~   70 (223)
T d2ih2a1           3 TPPEVVDFMVS----LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------WAEGILADF   70 (223)
T ss_dssp             CCHHHHHHHHH----HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------TEEEEESCG
T ss_pred             CCHHHHHHHHH----hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--------cceeeeeeh
Confidence            45555444444    44556788999999999999888774 3 3468999999998654432        345566665


Q ss_pred             cCCcc
Q 033605          106 RNLEW  110 (115)
Q Consensus       106 ~~~~~  110 (115)
                      ...+.
T Consensus        71 ~~~~~   75 (223)
T d2ih2a1          71 LLWEP   75 (223)
T ss_dssp             GGCCC
T ss_pred             hcccc
Confidence            54443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=3.6e-08  Score=60.08  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      ...+++|+|+|.|.-++.++ -.+..+++.+|.+...+...+......++ ++++++..++++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~  134 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ  134 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccc
Confidence            46799999999999999998 46677999999999999999999999998 89999998886643

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.7e-07  Score=58.71  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      ...++.+|||+++|.|.-+..++..  +...++++|+++..+..+++++...+. ++.+...|...++.
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~  159 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  159 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc
Confidence            4457889999999999999888853  456999999999999999999999998 89999999877653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.51  E-value=1.7e-07  Score=58.27  Aligned_cols=61  Identities=20%  Similarity=0.125  Sum_probs=50.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-----------CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~v~~~~~d~~~  107 (115)
                      .++.+||.+|+|.|..+..+++++..+|+++|+++.+++.|++.+...           ..+++++.+|+..
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~  142 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE  142 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH
Confidence            477899999999999999998877779999999999999999865422           1278899888753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=98.51  E-value=2.3e-07  Score=58.07  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      .+++.++.... .+++.|||..||+|..+..+.+.+. +.+|+|+++++++.|++++....
T Consensus       238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhcc
Confidence            34444444433 4888999999999999999888766 99999999999999999987654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=98.50  E-value=2.6e-07  Score=56.27  Aligned_cols=56  Identities=21%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .+++.+++... .+++.|||..||+|..+....+.+. +.+|+|++++.++.|++++.
T Consensus       200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            45555555543 4788999999999999998888766 99999999999999999875

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.48  E-value=2.8e-07  Score=60.47  Aligned_cols=87  Identities=21%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             cccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----C----------CCeEEEEeCChhHHHH
Q 033605           21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G----------ADQVIAIDIDSDSLEL   86 (115)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~----------~~~v~~vD~s~~~~~~   86 (115)
                      ....+|.||.++...+++.+    ....+.+|+|.+||+|.+...+.++    .          ...+.|+|+++.+...
T Consensus       139 k~~G~f~TP~~Iv~~mv~ll----~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~l  214 (425)
T d2okca1         139 SGAGQYFTPRPLIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL  214 (425)
T ss_dssp             TCCGGGCCCHHHHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred             ccchhhccchhhhHhhheec----cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHH
Confidence            33566888888877666644    3446789999999999999887642    1          1259999999999999


Q ss_pred             HHHHhhccCC---ceeEEEccccCCccc
Q 033605           87 ASENAADLEL---DIDFVQCDIRNLEWR  111 (115)
Q Consensus        87 a~~~~~~~~~---~v~~~~~d~~~~~~~  111 (115)
                      |+.+..-.+.   +..+..+|....+..
T Consensus       215 a~~n~~l~g~~~~~~~i~~~d~l~~~~~  242 (425)
T d2okca1         215 ASMNLYLHGIGTDRSPIVCEDSLEKEPS  242 (425)
T ss_dssp             HHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred             HHhhhhhcCCccccceeecCchhhhhcc
Confidence            9988765554   456777777654443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.41  E-value=3.8e-07  Score=57.61  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc------CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~v~~~~~d~~~  107 (115)
                      ..+++||.+|.|.|.....++++ +..+|+++|+++.+++.|++.+...      ..+++++.+|+.+
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~  143 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA  143 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH
Confidence            46789999999999999999876 4579999999999999999876431      2278888888754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.39  E-value=9.7e-07  Score=54.30  Aligned_cols=60  Identities=18%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ...+++.++.... .+++.|||..||+|..+....+.+. +.+|+|+++...+.|++++...
T Consensus       193 P~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         193 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            3445555555543 4888999999999999998888766 9999999999999999988753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.36  E-value=5.1e-07  Score=54.74  Aligned_cols=58  Identities=24%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhc-----CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +|.+|||+|++.|..+..++..     ..++++|+|+.+.........    ..+++++++|..+..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~----~~~I~~i~gDs~~~~  142 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD----MENITLHQGDCSDLT  142 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG----CTTEEEEECCSSCSG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc----ccceeeeecccccHH
Confidence            7889999999999988777631     246999999988654332211    127999999976544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.30  E-value=3.7e-06  Score=51.24  Aligned_cols=66  Identities=17%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           36 MLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ....+.+.+.. ....+|||||||+|.++..+++ ++..+++..|+.+ .++.+    . ...+++++.+|+.+
T Consensus        68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~----~-~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIENA----P-PLSGIEHVGGDMFA  135 (244)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTC----C-CCTTEEEEECCTTT
T ss_pred             HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhcc----C-CCCCeEEecCCccc
Confidence            34556666663 4557999999999999999995 6678999999843 33211    1 11289999999864

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.29  E-value=5.9e-06  Score=50.25  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCCCC-CCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           36 MLYTAENSFGDVS-NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        36 ~~~~~~~~~~~~~-~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ....++..+...+ ..+|||||||+|..+..+++ ++..++++.|+.+. ++.+     ....+++++.+|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-----~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-----PSYPGVEHVGGDMFV  135 (243)
T ss_dssp             HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-----CCCTTEEEEECCTTT
T ss_pred             HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-----ccCCceEEecccccc
Confidence            3444555555434 56899999999999999995 66789999998663 2211     111279999999854

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=3.2e-06  Score=53.33  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=56.3

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcc
Q 033605           44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW  110 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~  110 (115)
                      +...++.+|||+++|.|.-+..++..  +...++++|+++..+..++.+....+. ++.+...|...++.
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~  181 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE  181 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            34568889999999999998888853  346899999999999999999999888 88888888776553

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=1.7e-06  Score=54.10  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~  107 (115)
                      ..+.+||-+|.|.|....+++++. ..+|+++|+++.+++.|++.+...     +.+++++.+|+.+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~  154 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE  154 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH
Confidence            367899999999999999999864 579999999999999999876432     2278888888753

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.23  E-value=6.1e-06  Score=53.24  Aligned_cols=49  Identities=27%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             CCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL   96 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   96 (115)
                      ++.+|||..||+|..++..+ +.+..+|++.|+|+.+++.+++|+..++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~   94 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFD   94 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCc
Confidence            67899999999999999766 45667999999999999999999876653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=3e-06  Score=52.50  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc----c-CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD----L-ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~-~~~v~~~~~d~~~  107 (115)
                      .++.+||-+|.|.|..+.+++++ +..+|+++|+++..++.|++....    . ..+++++.+|+..
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~  140 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM  140 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH
Confidence            36789999999999999999986 457999999999999999997642    1 2278888888643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.8e-06  Score=52.34  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc-----cCCceeEEEccccC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-----LELDIDFVQCDIRN  107 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~v~~~~~d~~~  107 (115)
                      ...+++||-+|.|.|..+..++++ +..+++++|+++.+++.|++.+..     ...+++++.+|+..
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~  143 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE  143 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH
Confidence            347789999999999999999986 467999999999999999987642     12388998888643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.15  E-value=2.5e-06  Score=53.72  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~  107 (115)
                      ..+.+||-+|.|.|..+.+++++. ..+|+++|+++.+++.|++.....     ..+++++.+|+..
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~  171 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE  171 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH
Confidence            367899999999999999999864 469999999999999999976532     1267888777643

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.14  E-value=1e-06  Score=53.79  Aligned_cols=54  Identities=20%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ...+|||+|||+|..+..+++ ++..++++.|+. ..++.+.     ...+++++.+|+.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~-----~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENLS-----GSNNLTYVGGDMFT  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCC-----CBTTEEEEECCTTT
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhCc-----ccCceEEEecCccc
Confidence            346899999999999999985 666799999984 3333221     11289999999865

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.6e-05  Score=49.37  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=50.0

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605           44 FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (115)
Q Consensus        44 ~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d  104 (115)
                      +...++.+|||+++|.|.-+..++.. ....|+++|+++..+...+++....+. ++.....|
T Consensus        98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~  160 (284)
T d1sqga2          98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG  160 (284)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT
T ss_pred             cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc
Confidence            35568889999999999999998864 336899999999999999999999988 44444443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.02  E-value=1.4e-05  Score=49.77  Aligned_cols=60  Identities=18%  Similarity=0.158  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc-----cCCceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-----LELDIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~v~~~~~d~~  106 (115)
                      .++++||-+|.|.|....+++++ +..+++++|+++.+++.|++....     .+.+++++.+|+.
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~  144 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV  144 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH
Confidence            46789999999999999999986 446999999999999999997632     1227888888864

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=4.6e-05  Score=44.23  Aligned_cols=60  Identities=25%  Similarity=0.322  Sum_probs=41.8

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605           37 LYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (115)
Q Consensus        37 ~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~  107 (115)
                      +..+.+.+.. .++.+||||||++|.++..+++.  ....++++|+.+..           +. ++.++++|+.+
T Consensus        10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~   73 (180)
T d1ej0a_          10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTS
T ss_pred             HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeeccccc
Confidence            3345555554 46679999999999999998853  34689999988731           12 55666666544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.99  E-value=1.6e-05  Score=46.66  Aligned_cols=43  Identities=26%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCCChHHHH----HHhc-C----CCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCGCGTLGAA----ATLL-G----ADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~----~~~~-~----~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++.+|+++|||+|.-...    +.+. .    ..+|+|+|+++.+++.|+.
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            4567999999999994322    2222 1    2379999999999999974

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1e-05  Score=54.21  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----CC---------------CeEEEEeCChhH
Q 033605           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GA---------------DQVIAIDIDSDS   83 (115)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~~---------------~~v~~vD~s~~~   83 (115)
                      ..+|.||.++...+++.+    ...++.+|+|.+||+|.+...+.++    ..               ..++|+|+++.+
T Consensus       143 ~GqfyTP~~Iv~~mv~ll----~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~  218 (524)
T d2ar0a1         143 AGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT  218 (524)
T ss_dssp             --CCCCCHHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred             cchhccccchhHhhhhcc----cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHH
Confidence            456888888877666543    4446779999999999998776542    11               258999999999


Q ss_pred             HHHHHHHhhccC
Q 033605           84 LELASENAADLE   95 (115)
Q Consensus        84 ~~~a~~~~~~~~   95 (115)
                      ...|+-+..-.+
T Consensus       219 ~~la~~nl~l~~  230 (524)
T d2ar0a1         219 RRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhc
Confidence            999988776444

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.85  E-value=7.1e-06  Score=50.06  Aligned_cols=58  Identities=14%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc---C------C-ceeEEEccccC
Q 033605           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL---E------L-DIDFVQCDIRN  107 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~------~-~v~~~~~d~~~  107 (115)
                      +.+|||.-||.|.-++.++..++ +|+++|-++......+......   .      . +++++++|..+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~  156 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence            34899999999999999998865 9999999998876666544322   1      1 78999999644

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.82  E-value=4.1e-05  Score=47.66  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  110 (115)
                      .+|||+.||.|.++.-+-+.+...+.++|+++.+.+..+.|..     -.++.+|+.+++.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~   56 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISS   56 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCG
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCH
Confidence            3799999999999888877777667799999999999888874     3567788887754

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.68  E-value=4.3e-05  Score=46.43  Aligned_cols=49  Identities=20%  Similarity=0.119  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCC
Q 033605           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDID   80 (115)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s   80 (115)
                      .....+.++.+..-..+..+|+|||||.|.++..++... ...+.|+++-
T Consensus        50 R~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          50 RGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             THHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             hHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            344445556666555677799999999999999998653 3577888773

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.65  E-value=6.5e-05  Score=47.02  Aligned_cols=56  Identities=21%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .+.+||||.||.|.++..+.+.+..-+.++|+++.+++..+.|....      .++|+.++.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~------~~~Di~~~~   65 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK------PEGDITQVN   65 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC------CBSCGGGSC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC------CcCchhcCc
Confidence            67899999999999999888777766778999999999999987542      235665554

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=46.07  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +.+|+|+.||.|.++..+-+.+.  .-+.++|+++.+++..+.+..    +..++++|+.++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~   60 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGIT   60 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCC
Confidence            57899999999998877765553  236789999999999888765    3456667776554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.50  E-value=0.00021  Score=41.81  Aligned_cols=50  Identities=30%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ++.....++++||-+|||. |..+..+++ .+..+|+++|.++..++.|++.
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            3455677899999999996 556666665 5677999999999999998875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.00023  Score=40.49  Aligned_cols=50  Identities=22%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             HHhcCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +......++++||-+|+| .|.++..+++...++|+++|.+++.++.+++.
T Consensus        20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            344466788999999998 66677777754345999999999999998875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.34  E-value=0.00037  Score=39.54  Aligned_cols=50  Identities=20%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      ......++++||-+||| .|.++..+++...++|+++|.++..++.+++..
T Consensus        20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g   70 (170)
T d1e3ja2          20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG   70 (170)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred             HHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC
Confidence            34456688899999988 566677777654569999999999999998753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.22  E-value=0.00071  Score=38.80  Aligned_cols=52  Identities=25%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .+.....++++|+=+|||. |.+...+++ .+..+|+++|.+++.++.|++.-.
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            3444566889999999984 445555555 566799999999999999998754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.20  E-value=0.00072  Score=38.73  Aligned_cols=52  Identities=31%  Similarity=0.425  Sum_probs=41.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           40 AENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +.+.....++++||=+|||. |.++..+++ .+...|+++|.++..++.+++.-
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~G   73 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG   73 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhC
Confidence            34445667889999999985 777888886 46678999999999999988853

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.18  E-value=0.00017  Score=43.85  Aligned_cols=77  Identities=16%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC----------------------------------------
Q 033605           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG----------------------------------------   70 (115)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~----------------------------------------   70 (115)
                      .....++...+....-..+..++|..||+|.+.++.+...                                        
T Consensus        33 ~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~  112 (249)
T d1o9ga_          33 RLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR  112 (249)
T ss_dssp             HHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence            4455555555544333445679999999999988866310                                        


Q ss_pred             -CCeEEEEeCChhHHHHHH---HHhhccCC--ceeEEEccccC
Q 033605           71 -ADQVIAIDIDSDSLELAS---ENAADLEL--DIDFVQCDIRN  107 (115)
Q Consensus        71 -~~~v~~vD~s~~~~~~a~---~~~~~~~~--~v~~~~~d~~~  107 (115)
                       ...++|.|+++.+++.|+   .|+...+.  .+++.+.|+.+
T Consensus       113 ~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~  155 (249)
T d1o9ga_         113 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFD  155 (249)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             ccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhc
Confidence             014578888888888774   56666665  68888888754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.16  E-value=0.00068  Score=38.80  Aligned_cols=50  Identities=24%  Similarity=0.268  Sum_probs=39.6

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ++.....++++||=+|||. |.++..+++. +..+|+++|.++..++.+++.
T Consensus        20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            3445667888999999984 7777777764 556899999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00063  Score=39.05  Aligned_cols=46  Identities=35%  Similarity=0.466  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ...++++||-+|+| .|.+...+++ .+..+|+++|.+++.++.+++.
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            44578999999988 4666777775 4555899999999999998765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.14  E-value=0.00084  Score=38.38  Aligned_cols=51  Identities=24%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCCC-hHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           40 AENSFGDVSNKVVADFGCGCG-TLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~G-~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +++.....++++||=+|||.. .++..+++ .+..+|+++|.++..++.+++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            344556678899999999843 34555554 5677999999999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0013  Score=37.33  Aligned_cols=50  Identities=26%  Similarity=0.264  Sum_probs=37.9

Q ss_pred             HHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ++.....++++||=+|||. |.++..+++ .+..+|+++|.++..++.+++.
T Consensus        19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            3444666888999999984 445555665 4556899999999999998875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.01  E-value=0.0017  Score=36.53  Aligned_cols=49  Identities=31%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             HhcCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +.....++++||=+|+| .|..+..+++....+|+++|.++..++.+++.
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            44456688899989987 55566667764446999999999999988764

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=97.00  E-value=0.0016  Score=42.09  Aligned_cols=50  Identities=16%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHh-cC--CCeEEEEeCChhHHHHHHHHhhccC
Q 033605           46 DVSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLE   95 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~~~~~~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~   95 (115)
                      ..+..+++|+|+-.|..+..++. ..  ..+|+++|+++...+..+++...+.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            34677999999999999887764 22  3599999999999999999877554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.93  E-value=0.004  Score=37.70  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|.+.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+.++..+.+|+.+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~   66 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSE   66 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            478889988876654   3444555655 999999999999988888877777888999998653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0052  Score=36.90  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      ..++++|=-|++.|.   ++..+++.+. +|+.+|.+++.++...+.....+.++.++.+|+.+..
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE   69 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence            477888888887766   4555556655 9999999999998888888777768899999987653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.74  E-value=0.0034  Score=34.01  Aligned_cols=52  Identities=23%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             eEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           51 VVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +|+=+|+  |.++..+++   ....+|+.+|.+++.++.+....     .+.++.||+.+..
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~   56 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIK   56 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHH
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchh
Confidence            4555554  666666653   23449999999999998876543     3578888876543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.72  E-value=0.0082  Score=38.12  Aligned_cols=68  Identities=18%  Similarity=0.138  Sum_probs=43.1

Q ss_pred             cCCCchhhHHHHHHH----H---HHhcCCCCCCeEEEEcCCCChHHHHHHhc--------CCCeEEEEeCChhHHHHHHH
Q 033605           25 QYPTGPHIASRMLYT----A---ENSFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        25 ~~~~~~~~~~~~~~~----~---~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--------~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +|.|.++++.-.-+.    +   ......+++.+|+|+|+|+|.++..+++.        ...+++.+|.|+...+.-++
T Consensus        49 DF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          49 DFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             -CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             CeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            466666554332222    2   22234445568999999999998776532        23368999999987766665


Q ss_pred             Hhh
Q 033605           90 NAA   92 (115)
Q Consensus        90 ~~~   92 (115)
                      ...
T Consensus       129 ~l~  131 (365)
T d1zkda1         129 LLA  131 (365)
T ss_dssp             HST
T ss_pred             Hhc
Confidence            554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0079  Score=36.28  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.+.+.....+.  ++.++++|+.+.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~   73 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE   73 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCH
Confidence            378899999988665   3344445555 999999999999888777666543  688889998753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.55  E-value=0.0081  Score=36.50  Aligned_cols=62  Identities=23%  Similarity=0.188  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      ..+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+.   ++.++.+|+.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~   69 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTE   69 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCH
Confidence            3578888888877654   3444555655 999999999999888887766543   688899998754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.53  E-value=0.0057  Score=34.66  Aligned_cols=52  Identities=29%  Similarity=0.376  Sum_probs=38.2

Q ss_pred             HHHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           40 AENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        40 ~~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +.+.....++++||=+|||. |..+..+++ .+...++++|.++..++.+++.-
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G   73 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG   73 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC
Confidence            34445567888999999873 334555554 56778899999999999988753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.50  E-value=0.011  Score=35.61  Aligned_cols=61  Identities=18%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.+.+.....+.++.++.+|+.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~   68 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT   68 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHH
Confidence            78899999887654   3444455555 9999999999998888888877778888899986643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.45  E-value=0.0098  Score=33.18  Aligned_cols=49  Identities=29%  Similarity=0.295  Sum_probs=36.9

Q ss_pred             HhcCCCCCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ......++++||=.|+|.-. ....+++....+|+++|.++..++.+++.
T Consensus        21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            34456688899999998544 45555665555999999999999998774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.45  E-value=0.01  Score=35.61  Aligned_cols=59  Identities=20%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.| ++..++    +.+ .+|+.+|.+++.++.+.+.+...+.++.++++|+.+.
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~   71 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK   71 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            6778888886655 444444    444 5999999999999888888877776889999998764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.37  E-value=0.015  Score=35.13  Aligned_cols=60  Identities=27%  Similarity=0.362  Sum_probs=43.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.+|.+++.++.+.+.....+ .+.++.+|+.+.
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~   66 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKD   66 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC-ceEEEEccCCCH
Confidence            478899999977665   2334445554 99999999998887777665443 677888888653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.36  E-value=0.0078  Score=33.94  Aligned_cols=51  Identities=27%  Similarity=0.335  Sum_probs=38.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCChHH-HHHH-hcCCCeEEEEeCChhHHHHHHHHh
Q 033605           41 ENSFGDVSNKVVADFGCGCGTLG-AAAT-LLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~~~-~~~~-~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      .+.....++++|+=+|+|.+... ..++ ..+...|+++|.+++.++.+++.-
T Consensus        21 ~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G   73 (175)
T d1cdoa2          21 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG   73 (175)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             HHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC
Confidence            34445668899999999975543 3344 456779999999999999988753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.35  E-value=0.014  Score=35.18  Aligned_cols=60  Identities=15%  Similarity=0.158  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   ++..+++.+. +|+.+|.+++.++.+.+.....+.++.++.+|+.+.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~   69 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSR   69 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCH
Confidence            68889988877554   3444445555 999999999999888888777766888888988653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.012  Score=35.40  Aligned_cols=60  Identities=22%  Similarity=0.322  Sum_probs=44.1

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+ .+|+.+|.+++.++.+.+.+...+.++.++++|+.+.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~   72 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE   72 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCH
Confidence            77888877765544   223333444 4999999999999888887777766888999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.013  Score=32.83  Aligned_cols=51  Identities=20%  Similarity=0.192  Sum_probs=38.0

Q ss_pred             HHhcCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           41 ENSFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +......++++||=+|+| .|.+...+++...++++++|.+++..+.+++.-
T Consensus        23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lG   74 (168)
T d1uufa2          23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALG   74 (168)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccC
Confidence            345566788999999987 455666677644558889999999888887643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.24  E-value=0.0099  Score=33.47  Aligned_cols=51  Identities=29%  Similarity=0.350  Sum_probs=37.9

Q ss_pred             HHhcCCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           41 ENSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      .+.....++++||=.||| .|.++..+++ .+...|+++|.+++..+.+++.-
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG   73 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG   73 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC
Confidence            344456788999999988 3334555554 56779999999999999988754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.14  E-value=0.023  Score=34.13  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=42.8

Q ss_pred             CCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        49 ~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++++|=-|++.|.   ++..+++.+. +|+.+|.+++.++...+.+...+.++.++.+|+.+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~   63 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV   63 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCH
Confidence            3456666765444   2333445554 999999999999888888777777899999998764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.09  E-value=0.02  Score=34.48  Aligned_cols=60  Identities=15%  Similarity=0.062  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.....+.++..+.+|+.+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~   69 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLR   69 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCH
Confidence            67888988877665   3444555655 999999999999888887776666888999988653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.96  E-value=0.024  Score=34.39  Aligned_cols=61  Identities=25%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.+...+.   ++.++.+|+.+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~   68 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEA   68 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCH
Confidence            367888888877664   3344445555 999999999998888877766543   688899998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.95  E-value=0.03  Score=33.66  Aligned_cols=61  Identities=20%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+........  .++..+++|+.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~   67 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDE   67 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCH
Confidence            367788888887665   3455556655 99999999998887776655432  2788888998654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.94  E-value=0.029  Score=33.59  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             eEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+.+...+.++.++++|+.+.
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~   62 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR   62 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCH
Confidence            34666765444   2334445554 999999999999888887777776888999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.013  Score=33.07  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=37.3

Q ss_pred             HHhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      .+.....++++||-.|+  |.|..+..+++....++++++-+++..+.+++.
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc
Confidence            34445568889999996  366677777865456999999999888887753

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.83  E-value=0.029  Score=33.81  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+.....+.   ++.++.+|+.+.
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~   69 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTD   69 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCH
Confidence            367788888876554   2344445555 999999999999888777665543   688999998654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.041  Score=32.92  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~  108 (115)
                      +++++|=-|++.|.   .+..+++.+ .+|+.+|.+++.++.+........  .++.++++|+.+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~   66 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQ   66 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCH
Confidence            56788888876554   233344554 499999999999888777665432  2788999998764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.77  E-value=0.033  Score=33.33  Aligned_cols=60  Identities=25%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+..... .++.++.+|+.+.
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   66 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDE   66 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC-CcEEEEEccCCCH
Confidence            477888888866554   2344445555 9999999999888877766533 3788999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.66  E-value=0.017  Score=32.53  Aligned_cols=46  Identities=26%  Similarity=0.347  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           46 DVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        46 ~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      ..++++||-+|+|. |..+..+++ .+...++++|.+++.++.+++..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g   77 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG   77 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc
Confidence            34778999999984 444556664 56779999999999999888754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.59  E-value=0.029  Score=31.35  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=37.9

Q ss_pred             HHhcCCCCCCeEEEEcCC--CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGCG--CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G--~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +......++++||=+||+  .|..+..+++ .+...|+++|.++..++.+++.
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            344566788899999973  4555565554 5667999999999999998875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.52  E-value=0.031  Score=31.43  Aligned_cols=51  Identities=24%  Similarity=0.230  Sum_probs=38.0

Q ss_pred             HHhcCCCCCCeEEEEcCCCCh-HHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605           41 ENSFGDVSNKVVADFGCGCGT-LGAAATL-LGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~G~G~-~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      .+.....++++||=+|+|.+. ....+++ .+...|+++|.+++..+.+++.-
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            344456788999999997444 3444444 56679999999999999988764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.063  Score=31.97  Aligned_cols=58  Identities=24%  Similarity=0.221  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+....   ++.++++|+.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~~~   64 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD---AARYVHLDVTQP   64 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG---GEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC---cceEEEeecCCH
Confidence            478889988987664   3444555555 999999999887776655432   678888888653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.47  E-value=0.037  Score=33.65  Aligned_cols=61  Identities=25%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhh-ccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+ .+|+.+|.+...++.+.+... ..+.++.++.+|+.+.
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~   87 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDP   87 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccCh
Confidence            367889988877653   344444555 499999999988776665443 3445788888888653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.33  E-value=0.049  Score=32.61  Aligned_cols=62  Identities=23%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             CCCCCeEEEEcCCCC---hHHHHHHhcCCCeEEEE-eCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           46 DVSNKVVADFGCGCG---TLGAAATLLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G---~~~~~~~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +..++++|=.|++.|   .++..+++.+. +|+.. .-++...+.+.+.....+.++.++.+|+.+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~   68 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP   68 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCH
Confidence            347889997775544   23444445555 77764 5677777888888877777899999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.057  Score=32.27  Aligned_cols=60  Identities=15%  Similarity=0.253  Sum_probs=42.9

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHh-hccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+.. ...+.++.++.+|+.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~   67 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY   67 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCH
Confidence            67889988877654   3444555655 9999999998876665544 34455788889998653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.19  E-value=0.059  Score=30.44  Aligned_cols=46  Identities=24%  Similarity=0.196  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605           48 SNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   93 (115)
                      ++.+|+=+|+| .|..+...+....+.|+++|.+++.++..+.....
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~   77 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS   77 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc
Confidence            67899999999 55567777754456999999999999888776544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.053  Score=32.69  Aligned_cols=61  Identities=25%  Similarity=0.163  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           49 NKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +++|.=|-.|++.++..    +++.+..+|+.++-+++.++.+.+.+...+.++.++.+|+.+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~   66 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQ   66 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHH
Confidence            45664343344444444    44444569999999999999888888777778899999987653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.085  Score=31.48  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=40.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.+|.+++.++...+...    ++.++.+|+.+.
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~   63 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQE   63 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEccCCCH
Confidence            478899999977664   3344445555 99999999988776665443    577888888654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.1  Score=31.99  Aligned_cols=61  Identities=21%  Similarity=0.294  Sum_probs=42.6

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-----cCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-----LELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.+|.+++.++.+.+.+..     .+.++.++.+|+.+.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~   78 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE   78 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCH
Confidence            478899988877664   2334445554 999999999888766655432     233788899998764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.085  Score=31.31  Aligned_cols=57  Identities=23%  Similarity=0.289  Sum_probs=40.3

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+...    ++..++.|+.+.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~   64 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDW   64 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCH
Confidence            478899999977664   3444555555 99999999988776655433    567778887653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.00  E-value=0.031  Score=29.84  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             CCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           57 CGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        57 ~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ||.|..+..+++ ....+++.+|.++...+.++..      .+.++.||..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~   51 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GANFVHGDPTR   51 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TCEEEESCTTS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------CccccccccCC
Confidence            677889988885 3345899999999988776432      46788888765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.97  E-value=0.1  Score=31.18  Aligned_cols=58  Identities=19%  Similarity=0.165  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.+|.+++.++...+..   +.++.++++|+.+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~   63 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIE   63 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEcccCCH
Confidence            478889988887764   3445555655 8999999998776554433   33688888988653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.93  E-value=0.081  Score=31.82  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=43.4

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC-hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+ ++.++...+.....+.++.++++|+.+.
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~   80 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVV   80 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCH
Confidence            477889988887664   3445555655 99999987 4556666666666666888999988753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.84  E-value=0.063  Score=32.29  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=42.4

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh-hHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+. ..++...+.....+.++.++++|+.+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~   69 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE   69 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence            377788887777664   3344445554 999999875 456666666666666888899998764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.036  Score=31.15  Aligned_cols=50  Identities=6%  Similarity=-0.000  Sum_probs=37.0

Q ss_pred             HhcCCCCCCeEEEEcCC--CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           42 NSFGDVSNKVVADFGCG--CGTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G--~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +.....++++||=.|+|  .|.....+++...++|++++.+++..+.+++.-
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG   73 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG   73 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC
Confidence            33345678899888666  455677777654569999999999999887653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.078  Score=31.87  Aligned_cols=60  Identities=15%  Similarity=0.284  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRN  107 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~  107 (115)
                      .+++++|=.|++.|.   ++..+++.+. +|+.++.+++.++.+.+..... +..+.++..|..+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~   75 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED   75 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhh
Confidence            377899988888775   3444555654 9999999999998877665443 3367777777654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.73  E-value=0.12  Score=30.69  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=38.8

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.++.-  .+.......+.++.++.+|+.+.
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~   64 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQP   64 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCH
Confidence            477888888866553   3344445555 99999988753  33334444555788999998754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.64  E-value=0.11  Score=30.81  Aligned_cols=55  Identities=25%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+..     ++.++.+|+.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~   61 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GAHPVVMDVADP   61 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TCEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CCeEEEEecCCH
Confidence            67788888887664   2334445554 9999999998877765533     467788887653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.12  Score=30.70  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+....   ++..+.+|+.+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~---~~~~~~~Dv~~~   62 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA---NGKGLMLNVTDP   62 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG---GEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC---CCcEEEEEecCH
Confidence            67788888876554   3344445554 999999999888776665533   567788887653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.57  E-value=0.03  Score=32.12  Aligned_cols=46  Identities=24%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           47 VSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        47 ~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .++.+|+=||+|. |..+...+..-.+.|+++|+++..++..+....
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            3577999999995 556677775445599999999999999887654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.56  E-value=0.16  Score=30.66  Aligned_cols=57  Identities=21%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+...   .++..+.+|+.+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~   63 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG---DNVLGIVGDVRSL   63 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---CCeeEEecccccH
Confidence            67888888876554   2334445554 99999999988766555432   3678888887654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.50  E-value=0.052  Score=32.53  Aligned_cols=61  Identities=23%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHh-hccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.+..+.+.. ...+.++.++++|+.+.
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~   71 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT   71 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCH
Confidence            367888888866544   2344445544 9999999988776555443 34455788899998654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.35  E-value=0.11  Score=31.07  Aligned_cols=58  Identities=21%  Similarity=0.149  Sum_probs=39.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+..   +.+..++.+|+.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~   64 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSE   64 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCH
Confidence            477888888866553   3344445554 9999999998877665544   33667788887653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.34  E-value=0.12  Score=30.91  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=39.9

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.+.+..   +.++.++.+|+.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~   63 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GPAACAIALDVTDQ   63 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCH
Confidence            67788888877654   3444445554 9999999988776655543   44788888888653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.34  E-value=0.05  Score=30.51  Aligned_cols=50  Identities=16%  Similarity=0.050  Sum_probs=36.8

Q ss_pred             HHhcCCCCCCeEEEEcC-C-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           41 ENSFGDVSNKVVADFGC-G-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        41 ~~~~~~~~~~~vLDlG~-G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +......++++||=.|. | .|.....+++...++|++++-+++..+.+++.
T Consensus        20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2          20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL   71 (171)
T ss_dssp             HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT
T ss_pred             HHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc
Confidence            34445668889998884 3 45667777765556999999999988887764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.14  Score=27.96  Aligned_cols=55  Identities=15%  Similarity=0.052  Sum_probs=33.6

Q ss_pred             CeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++=+|+  |..+..+++   ....+++.+|.+++............  .+.++.||..+.
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~--~~~vi~Gd~~d~   61 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDS   61 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSH
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC--CcEEEEccCcch
Confidence            35665555  555555542   23458999999987654433333322  578888987653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.12  E-value=0.18  Score=29.80  Aligned_cols=58  Identities=22%  Similarity=0.223  Sum_probs=39.8

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+ .+|+.++.+.+.++...+   +.+.++.++++|+.+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dls~~   63 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVA---ALEAEAIAVVADVSDP   63 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---TCCSSEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---HcCCceEEEEecCCCH
Confidence            478888888887654   233344454 499999999987655443   3344788888998654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.18  Score=29.81  Aligned_cols=56  Identities=23%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+...    ++..++.|+.+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~   62 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDW   62 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCH
Confidence            67889988876654   2344445554 99999999887766554432    567788887653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.00  E-value=0.09  Score=31.43  Aligned_cols=60  Identities=17%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCC-hhHHHHHHHHhh-ccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAA-DLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s-~~~~~~a~~~~~-~~~~~v~~~~~d~~~~  108 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.++.+ +..++.+.+... ..+.++.++.+|+.+.
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~   67 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKG   67 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence            67788877766554   3344455555 99999987 455655555443 3445788899998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.82  E-value=0.037  Score=29.60  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             CCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           58 GCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        58 G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      |.|.++..+++   ....+|+.+|.+++.++.++..    +  ...+.+|+.+.
T Consensus         7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~--~~~~~gd~~~~   54 (134)
T d2hmva1           7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----A--THAVIANATEE   54 (134)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----C--SEEEECCTTCT
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----C--Ccceeeecccc
Confidence            55666666553   2345999999999998887532    2  34566776554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.46  E-value=0.28  Score=27.74  Aligned_cols=69  Identities=13%  Similarity=0.070  Sum_probs=43.4

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           36 MLYTAENSFG-DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        36 ~~~~~~~~~~-~~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      .+..+.+... ..+++++|=.|++.|.   .+..+++.+. +|+.++.+++..+...+...... ++.+...|..
T Consensus         9 ~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~   81 (191)
T d1luaa1           9 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETA   81 (191)
T ss_dssp             HHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECC
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc-chhhhhhhcc
Confidence            3444444433 4588899998866554   3344445655 99999999999877777665432 3344444443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.45  E-value=0.23  Score=29.38  Aligned_cols=60  Identities=20%  Similarity=0.109  Sum_probs=41.5

Q ss_pred             CCCCeEEEEcCCC----Ch-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGC----GT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~----G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.    |. .+..+++.+. +|+..+.++...+.+++.....+ +..++++|+.+.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   70 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG-GALLFRADVTQD   70 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT-CCEEEECCTTCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC-cccccccccCCH
Confidence            3788999999643    33 4445556655 89999999887777766555444 567788887653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.089  Score=30.15  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             CeEEEEcCCC-Ch-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           50 KVVADFGCGC-GT-LGAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        50 ~~vLDlG~G~-G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .+|-=+|+|+ |. ++..++..+. +|+.+|.+++.++.++++..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHH
Confidence            3677788874 22 2233334554 99999999999888877654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.06  E-value=0.25  Score=29.14  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=40.8

Q ss_pred             eEEEEcCCCCh---HHHHHHhcCCC------eEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           51 VVADFGCGCGT---LGAAATLLGAD------QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~---~~~~~~~~~~~------~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      .||=-|++.|.   ++..+++.+..      .|+.++.+++.++...+.....+.++.++.+|+.+..
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~   70 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMA   70 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence            35566766654   23444455442      3889999999988888877777668888999987643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.43  Score=28.03  Aligned_cols=57  Identities=23%  Similarity=0.202  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcCCC--C--h-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605           47 VSNKVVADFGCGC--G--T-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (115)
Q Consensus        47 ~~~~~vLDlG~G~--G--~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~  105 (115)
                      .+++++|=.|+++  |  . .+..+++.+. +|+.++.+++..+.+++.....+ +....+.|.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   64 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG-SDIVLQCDV   64 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT-CCCEEECCT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcC-Ccceeeccc
Confidence            4788999998765  4  2 4455666655 89999999888777776655544 344444444

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.65  E-value=0.47  Score=28.03  Aligned_cols=55  Identities=25%  Similarity=0.245  Sum_probs=36.6

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++..+.++..      +..++++|+.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~   60 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI------GGAFFQVDLEDE   60 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH------TCEEEECCTTCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc------CCeEEEEeCCCH
Confidence            478889988866554   2344445555 999999998876655432      345677777653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.44  E-value=0.14  Score=29.45  Aligned_cols=37  Identities=27%  Similarity=0.540  Sum_probs=23.2

Q ss_pred             eEEEEcCC-CCh-HHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605           51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDSDSLELAS   88 (115)
Q Consensus        51 ~vLDlG~G-~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~   88 (115)
                      +|-=+|+| .|. ++..+++.+. +|+|+|++++.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhc
Confidence            34456666 333 2333345555 9999999998877654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.21  E-value=0.26  Score=27.61  Aligned_cols=50  Identities=10%  Similarity=0.080  Sum_probs=36.7

Q ss_pred             HhcCCCCCCeEEEEcCCC--ChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           42 NSFGDVSNKVVADFGCGC--GTLGAAATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~G~--G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +..+..++++||=.|++.  |.....+++...++|+++.-+++..+.+++.-
T Consensus        23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~G   74 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIG   74 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT
T ss_pred             HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhh
Confidence            444556789999877754  44566677655669999999998888877653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.14  E-value=0.37  Score=28.53  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCC
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLL--GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL  108 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~  108 (115)
                      .+++++|=-|++.|.   ++..+++.  ...+|+.++.+++.++.+.+.+...+  .++.++.+|+.+.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~   72 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE   72 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence            356666666666554   23334432  34599999999999988777665432  3788899998764

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.87  E-value=0.41  Score=28.23  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEe---CChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAID---IDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD---~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++.++|=.|. +|.++..+    ++.+..+|+.+-   .+.+......+.....+.++.++.+|+.+.
T Consensus         8 p~gt~lVTGg-s~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~   74 (259)
T d2fr1a1           8 PTGTVLVTGG-TGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDR   74 (259)
T ss_dssp             CCSEEEEETT-TSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred             CcCEEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchH
Confidence            5568888884 55554444    455655666552   233333333334444556888999998653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.65  Score=27.12  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++...+....   +......+..
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~   61 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN---NCVFAPADVT   61 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT---TEEEEECCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC---Cccccccccc
Confidence            478888988888764   2444445555 999999998877666554432   3444444443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.07  E-value=0.22  Score=27.36  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=25.7

Q ss_pred             eEEEEcCC-CCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        51 ~vLDlG~G-~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      +|.=+|+| .|. ++..+.+.+. +|++.|.+++.++.+++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~   42 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER   42 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh
Confidence            45566665 222 3334444544 999999999988887764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.94  E-value=0.25  Score=27.24  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             eEEEEcCCC-Ch-HHHHHHhcC-CCeEEEEeCChhHHHHHHHHh
Q 033605           51 VVADFGCGC-GT-LGAAATLLG-ADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        51 ~vLDlG~G~-G~-~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      +|+=+|||. |. ++..+.+.+ ..+|+|+|.+++.++.+++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~   46 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG   46 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh
Confidence            467788873 44 333444444 358999999999999988763

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.80  E-value=0.26  Score=30.23  Aligned_cols=58  Identities=24%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHh----cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++++||=.| |+|.++..+++    .+. +|+++|.++.......+.... ..+++++.+|+.+.
T Consensus         7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~i~~~~~Dl~d~   68 (356)
T d1rkxa_           7 QGKRVFVTG-HTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARV-ADGMQSEIGDIRDQ   68 (356)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTT-TTTSEEEECCTTCH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhc-ccCCeEEEeeccCh
Confidence            668888776 56887776653    344 899999876543332222211 12688999988653

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.73  E-value=0.39  Score=28.60  Aligned_cols=48  Identities=8%  Similarity=0.034  Sum_probs=34.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ..+...++. ...+.+|+.||.|...+.+.   ..+++.-|+++..+..-+.
T Consensus        17 ~~i~~~~p~-~~~~yvEpF~Gggav~~~~~---~~~~viND~n~~lin~~~~   64 (275)
T d2dpma_          17 PVIRELIPK-TYNRYFEPFVGGGALFFDLA---PKDAVINDFNAELINCYQQ   64 (275)
T ss_dssp             HHHHHHSCS-SCSCEEETTCTTCHHHHHHC---CSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhcCc-ccCEEEeeCCCHHHHHhhhc---cCcEEEEeCCHHHHHHHHH
Confidence            344455442 35689999999998888663   3478999999998765443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.64  E-value=0.34  Score=26.53  Aligned_cols=42  Identities=21%  Similarity=0.099  Sum_probs=28.1

Q ss_pred             CCeEEEEcCC-CChHHHH-HHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605           49 NKVVADFGCG-CGTLGAA-ATLLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        49 ~~~vLDlG~G-~G~~~~~-~~~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      .++||=+|+| .|..... |++.+. +|+.+|.+.+.........
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~   45 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGV   45 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcc
Confidence            3577779886 4444333 334555 8999999999777665543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.63  E-value=0.6  Score=27.47  Aligned_cols=56  Identities=18%  Similarity=0.106  Sum_probs=35.4

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEeC-ChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      .+|=-|++ +.++..++    +.+ .+|+..+. +++.++...+.....+.++.++++|+.+.
T Consensus         3 V~lITGas-~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~   63 (244)
T d1edoa_           3 VVVVTGAS-RGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE   63 (244)
T ss_dssp             EEEETTCS-SHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred             EEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence            34444544 44544444    444 48887775 56667777776666666788888888764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.20  E-value=0.87  Score=28.30  Aligned_cols=28  Identities=32%  Similarity=0.361  Sum_probs=19.4

Q ss_pred             CCeEEEEcCCCChHHHHHHh----cCCCeEEEEe
Q 033605           49 NKVVADFGCGCGTLGAAATL----LGADQVIAID   78 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~~~----~~~~~v~~vD   78 (115)
                      +++||=.| |+|.++.++++    .+. +|+++|
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            45777666 58888776653    344 999998

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=90.19  E-value=1  Score=27.48  Aligned_cols=72  Identities=18%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccC
Q 033605           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRN  107 (115)
Q Consensus        35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~  107 (115)
                      +.++..+..........|+.||||.-.-...+.......++=+|. |++++.-++.+...+.    +..++..|+.+
T Consensus        76 r~~D~~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~  151 (297)
T d2uyoa1          76 NFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  151 (297)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             HHHHHHHHHHHhhCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence            344444433222233456679999888776653233446777774 6677666666654432    67888888764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=89.45  E-value=1  Score=26.98  Aligned_cols=55  Identities=27%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             eEEEEcCCCChHHHHHH----hcCCCeEEEEe-CChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAAT----LLGADQVIAID-IDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD-~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +|| |-.|+|.++..+.    +.+ -+|+++| +++............. .+++++.+|+.+.
T Consensus         2 KIL-VTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~~~~~~~~-~~~~~i~~Di~~~   61 (338)
T d1orra_           2 KLL-ITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSL-GNFEFVHGDIRNK   61 (338)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHTT-CCCEEEECCTTCH
T ss_pred             EEE-EECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhHHHHhhcc-CCcEEEEcccCCH
Confidence            466 4457788776665    344 4999998 4443322222222222 2789999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.81  E-value=0.38  Score=27.21  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=24.1

Q ss_pred             eEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHH
Q 033605           51 VVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +|-=+  |.|+.++.+|   ..+. +|+|+|+++..++..+.
T Consensus         2 kI~Vi--GlG~vGl~~a~~~a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVA--GSGYVGLSLGVLLSLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEE--CCSHHHHHHHHHHTTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEE--CCChhHHHHHHHHHCCC-cEEEEECCHHHHHHHhh
Confidence            34445  4566665554   2344 99999999998877653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.77  E-value=0.28  Score=27.29  Aligned_cols=48  Identities=10%  Similarity=0.021  Sum_probs=32.9

Q ss_pred             HhcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           42 NSFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        42 ~~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      +.....++++||=.|.  |.|..+..+++....+++++.-+++..+.+++
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~   68 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   68 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc
Confidence            3334567789998773  35556666775444589998888887777764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.37  Score=29.44  Aligned_cols=52  Identities=27%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             eEEEEcCCCChHHHHHHh----cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           51 VVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +||=.| |+|.++..+++    .+..+|+++|...........     ..+++++.+|+.+.
T Consensus         2 KILITG-~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~-----~~~~~~i~~Di~~~   57 (342)
T d2blla1           2 RVLILG-VNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN-----HPHFHFVEGDISIH   57 (342)
T ss_dssp             EEEEET-CSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTT-----CTTEEEEECCTTTC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhcc-----CCCeEEEECccCCh
Confidence            566665 48887776653    344589999987543322111     12789999998653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.43  Score=29.19  Aligned_cols=54  Identities=30%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             eEEEEcCCCChHHHHHHh----cCCCeEEEEeC----ChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           51 VVADFGCGCGTLGAAATL----LGADQVIAIDI----DSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~~----~~~~~v~~vD~----s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +||=.| |+|.++..+++    .+ -+|+++|.    ............   ..+++++++|+.+..
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~   63 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLG---GKHPTFVEGDIRNEA   63 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHH---TSCCEEEECCTTCHH
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhhc---CCCCEEEEeecCCHH
Confidence            455444 78888777663    34 48999984    222333322221   127899999987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=87.31  E-value=1.4  Score=24.25  Aligned_cols=53  Identities=11%  Similarity=0.004  Sum_probs=36.3

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCChHHHHHH--hcCCCeEEEEeCChhHHHHHHHHh
Q 033605           39 TAENSFGDVSNKVVADFGCGCGTLGAAAT--LLGADQVIAIDIDSDSLELASENA   91 (115)
Q Consensus        39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~--~~~~~~v~~vD~s~~~~~~a~~~~   91 (115)
                      .+++.....++.+||=+|||--.-+...+  +.+..+++.+.-+++..+......
T Consensus         7 ~~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1           7 KLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             HHHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            34455566678899999999665443333  566678999988888766655544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=87.23  E-value=0.28  Score=24.39  Aligned_cols=35  Identities=20%  Similarity=0.099  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChh
Q 033605           48 SNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSD   82 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~   82 (115)
                      ++++|+=+|-| +|..+..++.....+|++.|..+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            67789999888 555444444333559999998554

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=87.22  E-value=0.093  Score=33.22  Aligned_cols=18  Identities=33%  Similarity=0.597  Sum_probs=14.8

Q ss_pred             CCeEEEEcCCCChHHHHH
Q 033605           49 NKVVADFGCGCGTLGAAA   66 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~~   66 (115)
                      .-+|.|+||.+|..++.+
T Consensus        52 ~~~IADlGCS~G~Ntl~~   69 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFA   69 (359)
T ss_dssp             EECCEEESCCSSTTTTTG
T ss_pred             ceEEEEeCCCCCccHHHH
Confidence            357999999999988654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=87.21  E-value=1.4  Score=24.33  Aligned_cols=49  Identities=14%  Similarity=0.055  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCCChH-HHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605           46 DVSNKVVADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADL   94 (115)
Q Consensus        46 ~~~~~~vLDlG~G~G~~-~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   94 (115)
                      ..++++||=+|+|-..- ....+..+..+++.+.-+++..+...+++...
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~   64 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY   64 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc
Confidence            34778999999984443 33333335679999999988887777766543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.21  E-value=1.6  Score=25.63  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=36.4

Q ss_pred             CCCCeEEEEcCC----CCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605           47 VSNKVVADFGCG----CGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (115)
Q Consensus        47 ~~~~~vLDlG~G----~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~  106 (115)
                      .+++++|=.|++    .|. .+..+++.+. +|+.++.++...+.+++.....+ +..+...|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~-~~~~~~~d~~   65 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN-SPYVYELDVS   65 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCC-ceeEeeeccc
Confidence            478899999853    343 2344445544 99999999876666665544333 4555566554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.04  E-value=0.75  Score=26.97  Aligned_cols=57  Identities=12%  Similarity=0.015  Sum_probs=34.6

Q ss_pred             CCeEEEEcCCCCh---HHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           49 NKVVADFGCGCGT---LGAAATLLGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        49 ~~~vLDlG~G~G~---~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      +++||=-|++.|.   ++..+++.+. .+|+++.-+++.++.+++   ..+.++.++++|+.+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~---~~~~~~~~~~~Dvs~~   63 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS---IKDSRVHVLPLTVTCD   63 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT---CCCTTEEEEECCTTCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH---hhCCceEEEEEecCCH
Confidence            4678877766553   3334444444 368888777766554432   2233788888888654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.95  E-value=0.44  Score=26.92  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             CeEEEEcCCCChH--HHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605           50 KVVADFGCGCGTL--GAAATLLGADQVIAIDIDSDSLELASENAA   92 (115)
Q Consensus        50 ~~vLDlG~G~G~~--~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~   92 (115)
                      .+|-=+|+|+=..  +..++..+. +|+.+|.+++.++.+..+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~   48 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAA   48 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhh
Confidence            4567788863222  223334544 99999999999887766543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.79  E-value=1.5  Score=25.64  Aligned_cols=59  Identities=19%  Similarity=0.195  Sum_probs=36.4

Q ss_pred             CCCCCeEEEEcC-C---CCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605           46 DVSNKVVADFGC-G---CGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (115)
Q Consensus        46 ~~~~~~vLDlG~-G---~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~  107 (115)
                      ..+++++|=.|+ |   .|. .+..+++.+. +|+.++.+....  +++.....+.+...+++|+.+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~--~~~~~~~~~~~~~~~~~dv~~   66 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRL--IQRITDRLPAKAPLLELDVQN   66 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHH--HHHHHTTSSSCCCEEECCTTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHH--HHHHHHHcCCceeeEeeeccc
Confidence            347889999995 3   343 3445556655 899998877643  233333344466677777654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.14  E-value=0.64  Score=26.04  Aligned_cols=53  Identities=13%  Similarity=-0.073  Sum_probs=38.0

Q ss_pred             HHHHHhcCCCCCCeEEEEcCC--CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           38 YTAENSFGDVSNKVVADFGCG--CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        38 ~~~~~~~~~~~~~~vLDlG~G--~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ..+.+.....++++||=-|.+  .|..+..+++....+|+++--+++-.+.+++.
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l   75 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL   75 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc
Confidence            334444455567889988854  45566777765566999999999988888765

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.79  Score=26.91  Aligned_cols=39  Identities=31%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHH
Q 033605           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLEL   86 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~   86 (115)
                      .+++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQE   45 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            477888888866554   2344445554 99999999876544

>d1yf3a1 c.66.1.28 (A:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase T4DAM
species: Bacteriophage T4 [TaxId: 10665]

Probab=85.92  E-value=0.33  Score=28.62  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=35.8

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (115)
Q Consensus        36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~   90 (115)
                      ++..+...++  +..+.+|+.||.|.+.+.+    ..+++.-|+++..+..-+..
T Consensus        14 l~~~i~~~~p--~~~~yvEPF~Gggav~~~~----~~~~v~ND~n~~lin~~~~v   62 (259)
T d1yf3a1          14 LLPELKSHFP--KYNRFVDLFCGGLSVSLNV----NGPVLANDIQEPIIEMYKRL   62 (259)
T ss_dssp             THHHHHHTCC--CCSEEEETTCTTCTTGGGS----CSSEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHhCC--CCCeEEeecccHHHHHhcc----CCCEEEecCCHHHHHHHHHH
Confidence            4445555555  4679999999999987643    23688999999988766543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.79  E-value=1.4  Score=25.66  Aligned_cols=57  Identities=18%  Similarity=0.317  Sum_probs=36.2

Q ss_pred             eEEEEcCCCChHHHHHH----h--cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605           51 VVADFGCGCGTLGAAAT----L--LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (115)
Q Consensus        51 ~vLDlG~G~G~~~~~~~----~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~  109 (115)
                      +||=-|++.| ++..++    +  ....+|+.++-+++.++.+++.... +.++.++.+|+.+..
T Consensus         4 tilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~   66 (248)
T d1snya_           4 SILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-HSNIHILEIDLRNFD   66 (248)
T ss_dssp             EEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-CTTEEEEECCTTCGG
T ss_pred             EEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-CCcEEEEEEEeccHH
Confidence            5776665554 444443    2  1245899999888877766654443 337888888887643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.66  E-value=2.5  Score=25.58  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHh----cCCCeEEEEeC----ChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605           48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDI----DSDSLELASENAADLEL-DIDFVQCDIRNL  108 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~~----~~~~~v~~vD~----s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~  108 (115)
                      ++++||=. .|+|..+..+.+    .+. +|+++|.    +...+...+........ +++++.+|..+.
T Consensus        15 ~~k~iLVT-G~tGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~   82 (341)
T d1sb8a_          15 QPKVWLIT-GVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNL   82 (341)
T ss_dssp             SCCEEEEE-TTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSH
T ss_pred             CCCEEEEe-cCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccc
Confidence            56678866 488888877663    344 9999995    22233333333222221 688888888653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.24  E-value=2.1  Score=24.78  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=26.1

Q ss_pred             CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHH
Q 033605           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLEL   86 (115)
Q Consensus        48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~   86 (115)
                      +++++|=.|++.|.   .+..+++.+. +|+.+|.+++.++.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKR   43 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHh
Confidence            67888988877654   2334445554 99999999876543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.19  E-value=0.55  Score=28.69  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCChHHHH-HHhcCCCeEEEEeCChh
Q 033605           49 NKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSD   82 (115)
Q Consensus        49 ~~~vLDlG~G~G~~~~~-~~~~~~~~v~~vD~s~~   82 (115)
                      .++|+=||+|.+.++.+ .+.....+|+.+|-++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            46899999996665443 33332349999997774

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=83.35  E-value=0.69  Score=27.51  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=25.7

Q ss_pred             CCCCeEEEEcCCCChHHHH--HHhcCCCeEEEEeCCh
Q 033605           47 VSNKVVADFGCGCGTLGAA--ATLLGADQVIAIDIDS   81 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~~~--~~~~~~~~v~~vD~s~   81 (115)
                      .++++|+=||+|.+.++..  |++.+. +|+.+|-++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4667999999998886554  445655 899999765

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=0.87  Score=27.74  Aligned_cols=55  Identities=24%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             CeEEEEcCCCChHHHHHHhc---CCCeEEEEeC------C----hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605           50 KVVADFGCGCGTLGAAATLL---GADQVIAIDI------D----SDSLELASENAADLELDIDFVQCDIRNL  108 (115)
Q Consensus        50 ~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~------s----~~~~~~a~~~~~~~~~~v~~~~~d~~~~  108 (115)
                      ++|| |=.|+|..+.++.+.   ..-+|+++|-      +    +.........   ...++.++.+|+.+.
T Consensus         3 kKIL-ITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~   70 (346)
T d1ek6a_           3 EKVL-VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL---TGRSVEFEEMDILDQ   70 (346)
T ss_dssp             SEEE-EETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH---HTCCCEEEECCTTCH
T ss_pred             CeEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh---cCCCcEEEEeecccc
Confidence            3677 445789988777632   2348999983      1    1222222222   122788999998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=82.68  E-value=1.9  Score=24.65  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcCCC-ChHHHH-HHhcCCCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCGC-GTLGAA-ATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G~-G~~~~~-~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++.+|+=-|+|. |..... +++.+ .+|++.|+++..+..+..
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d~~~~~~~~~   68 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDTERVAHAVA   68 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecchHHHHHHHHh
Confidence            5788999888884 443333 33554 599999999998887665

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.71  Score=27.04  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEe
Q 033605           48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAID   78 (115)
Q Consensus        48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD   78 (115)
                      +..+|+=+||| .|.. +..|+..|..+++.+|
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD   61 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD   61 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            44699999999 4553 4445577888999999

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.63  E-value=1.7  Score=20.77  Aligned_cols=45  Identities=16%  Similarity=0.073  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEcCC--CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           45 GDVSNKVVADFGCG--CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        45 ~~~~~~~vLDlG~G--~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      ...++.+||=.|..  .|.+.+.+++....+|+++--|++-.+.+++
T Consensus        28 ~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            33467778776653  4445666665445599999999998888875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=2.8  Score=23.18  Aligned_cols=43  Identities=14%  Similarity=0.265  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCCChHH--HHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605           47 VSNKVVADFGCGCGTLG--AAATLLGADQVIAIDIDSDSLELASE   89 (115)
Q Consensus        47 ~~~~~vLDlG~G~G~~~--~~~~~~~~~~v~~vD~s~~~~~~a~~   89 (115)
                      .++.+||=+|||--.-+  ..++..+..+++.++-+++..+.+..
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            46789999999833322  22335677799999988877665544

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.93  E-value=2.4  Score=21.89  Aligned_cols=46  Identities=15%  Similarity=0.221  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCCh--------hHHHHHHHHhhccCC
Q 033605           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDS--------DSLELASENAADLEL   96 (115)
Q Consensus        48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~--------~~~~~a~~~~~~~~~   96 (115)
                      .+++++=+|.|  ..+.+++    +. ..+|+.++.++        ++.+.+++.+.+.++
T Consensus        22 ~p~~~vIiG~G--~ig~E~A~~l~~l-G~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          22 IPKRLTIIGGG--IIGLEMGSVYSRL-GSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             CCSEEEEECCS--HHHHHHHHHHHHT-TCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCC--chHHHHHHHHHhh-CcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            45688877765  4444444    34 45999999655        677888888877775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.34  E-value=0.59  Score=23.48  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             CCCeEEEEcC-CCChHHH--HHHhcCCCeEEEEeCCh
Q 033605           48 SNKVVADFGC-GCGTLGA--AATLLGADQVIAIDIDS   81 (115)
Q Consensus        48 ~~~~vLDlG~-G~G~~~~--~~~~~~~~~v~~vD~s~   81 (115)
                      ..+++.=+|. |+|..++  .+.+.+. +|+|.|...
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            4456777764 4776553  3445656 999999864