Citrus Sinensis ID: 033637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MAASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHccHHHHHHHccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEEEHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHEccHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHcc
Coil and Loop (DISEMBL)
maaskdneeasdapsspkkvykdpddgRQRFLLELEFVQCLanptyihylaqnryfedEAFIGYLKYLQYwqrpeyikfimypHCLYFLELLQNANfrnamahpankVRLCCLL
Flexible Loop (DISEMBL)
maaskdneeasdapsspkkvykdpDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Low Complexity Region (SEG)
MAASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Disordered region (IsUnstruct)
*****************************RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCL*
Disordered Region (DISOPRED)
******************************FLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Disordered Region (DISEMBL)
*********************KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Disordered Region (DISPRO)
**************************GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKVRLCCLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q8VYB1	196	Mediator of RNA polymeras	yes	no	0.938	0.545	0.842	1e-49
Q54NI7	176	Putative mediator of RNA	yes	no	0.649	0.420	0.648	7e-25
Q9USH1	139	Mediator of RNA polymeras	yes	no	0.701	0.575	0.592	2e-23
Q8IH24	204	Mediator of RNA polymeras	yes	no	0.701	0.392	0.529	4e-22
Q6DH26	136	Mediator of RNA polymeras	yes	no	0.728	0.610	0.566	5e-22
Q9CXU1	131	Mediator of RNA polymeras	yes	no	0.719	0.625	0.573	1e-21
A0JNN3	131	Mediator of RNA polymeras	yes	no	0.719	0.625	0.573	1e-21
Q9Y3C7	131	Mediator of RNA polymeras	yes	no	0.719	0.625	0.573	2e-21
Q59P87	146	Mediator of RNA polymeras	N/A	no	0.605	0.472	0.637	5e-21
Q28FE2	128	Mediator of RNA polymeras	yes	no	0.692	0.617	0.569	1e-20

>sp|Q8VYB1|MED31_ARATH Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/108 (84%), Positives = 98/108 (90%), Gaps = 1/108 (0%)

Query: 1   MAASKD-NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           MA+ ++  ++AS+ PS PK  YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANK 108

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54NI7|MED31_DICDI Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 62/74 (83%)

Query: 30  RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
           RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+ YL YLQYW++PEY KFI+YP  LYFL
Sbjct: 55  RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFL 114

Query: 90  ELLQNANFRNAMAH 103
           +LLQ   FR  + H
Sbjct: 115 DLLQEERFRQELNH 128

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USH1|MED31_SCHPO Mediator of RNA polymerase II transcription subunit 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=med31 PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 67/81 (82%), Gaps = 1/81 (1%)

Query: 22  KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 81
           K PDD + RF +ELEFVQ L+NP Y+++LAQ++YFEDEAF+ YL+Y++YW+ PEY+KFI+
Sbjct: 9   KVPDD-KSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFII 67

Query: 82  YPHCLYFLELLQNANFRNAMA 102
           YP CL+ L LL+N  FRN ++
Sbjct: 68  YPTCLHMLTLLKNPQFRNDIS 88

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8IH24|MED31_DROME Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 5/85 (5%)

Query: 28  RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 87
           ++R+ +ELEFVQCL+NP Y+++LAQ  +F+D++FI YLKYLQYW+ P+Y K++MYP CLY
Sbjct: 19  KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLY 78

Query: 88  FLELLQNANFRNAMAHPANKVRLCC 112
           FL+LLQ  +FR  + +       CC
Sbjct: 79  FLDLLQYEHFRREIVNSQ-----CC 98

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA gene.

Drosophila melanogaster (taxid: 7227)

>sp|Q6DH26|MED31_DANRE Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 60/83 (72%)

Query: 20  VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKF 79
           V +  +  RQRF LELEFVQCLANP Y+++LAQ  Y  ++ F+ YLKYL YW+ PEY KF
Sbjct: 4   VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKF 63

Query: 80  IMYPHCLYFLELLQNANFRNAMA 102
           + YPHCL+ LELLQ  +FR  + 
Sbjct: 64  LKYPHCLHMLELLQYEHFRKELV 86

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q9CXU1|MED31_MOUSE Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query: 23  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMY 82
           D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 83  PHCLYFLELLQNANFRNAMAHP 104
           P CL+ LELLQ  +FR  + + 
Sbjct: 70  PQCLHMLELLQYEHFRKELVNA 91

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|A0JNN3|MED31_BOVIN Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query: 23  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMY 82
           D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 83  PHCLYFLELLQNANFRNAMAHP 104
           P CL+ LELLQ  +FR  + + 
Sbjct: 70  PQCLHMLELLQYEHFRKELVNA 91

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q9Y3C7|MED31_HUMAN Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query: 23  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMY 82
           D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKY 69

Query: 83  PHCLYFLELLQNANFRNAMAHP 104
           P CL+ LELLQ  +FR  + + 
Sbjct: 70  PQCLHMLELLQYEHFRKELVNA 91

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q59P87|MED31_CANAL Mediator of RNA polymerase II transcription subunit 31 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SOH1 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 56/69 (81%)

Query: 30 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFL 89
          R+ +ELEFVQ L+N  Y++YLAQN YF DE FI YL YLQYW +PEY KF++YP+CL+ L
Sbjct: 30 RWEIELEFVQSLSNIPYVNYLAQNNYFNDENFINYLNYLQYWTQPEYSKFLVYPNCLHIL 89

Query: 90 ELLQNANFR 98
          +LLQ+ NFR
Sbjct: 90 KLLQDENFR 98

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q28FE2|MED31_XENTR Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus tropicalis GN=med31 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 25  DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPH 84
           +  R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP 
Sbjct: 9   EQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQ 68

Query: 85  CLYFLELLQNANFRNAMAH 103
           CL+ LELLQ  +FR  + +
Sbjct: 69  CLHMLELLQYEHFRKELVN 87

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
225454890	198	PREDICTED: mediator of RNA polymerase II	0.938	0.540	0.859	1e-50
356575895	206	PREDICTED: mediator of RNA polymerase II	0.938	0.519	0.870	2e-50
351725994	205	uncharacterized protein LOC100527879 [Gl	0.938	0.521	0.861	3e-50
388496894	204	unknown [Medicago truncatula]	0.938	0.524	0.861	2e-49
388495082	206	unknown [Lotus japonicus]	0.938	0.519	0.851	6e-49
449519184	206	PREDICTED: mediator of RNA polymerase II	0.877	0.485	0.91	7e-49
449458311	206	PREDICTED: mediator of RNA polymerase II	0.877	0.485	0.91	7e-49
22326900	196	mediator of RNA polymerase II transcript	0.938	0.545	0.842	6e-48
334187779	226	mediator of RNA polymerase II transcript	0.938	0.473	0.842	9e-48
116787995	189	unknown [Picea sitchensis]	0.938	0.566	0.831	1e-47

>gi|225454890|ref|XP_002279047.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Vitis vinifera] gi|297737389|emb|CBI26590.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 101/107 (94%)

Query: 1   MAASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEA 60
           M + K+++ A+D P+SPK VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEA
Sbjct: 1   MDSGKESDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEA 60

Query: 61  FIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           FIGYLKYLQYWQ+PEYIKFIMYPHCL+FLELLQNANFRNAMAHP +K
Sbjct: 61  FIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSK 107

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575895|ref|XP_003556072.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Glycine max]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/108 (87%), Positives = 102/108 (94%), Gaps = 1/108 (0%)

Query: 1   MAASKDNEEASD-APSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           MA+  ++E ++D +PSSPK +YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKIESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHP NK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNK 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725994|ref|NP_001235064.1| uncharacterized protein LOC100527879 [Glycine max] gi|255633448|gb|ACU17082.1| unknown [Glycine max]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/108 (86%), Positives = 101/108 (93%), Gaps = 1/108 (0%)

Query: 1   MAASKDNEEASD-APSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           MA+  ++E ++D +PSSPK +YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKIESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHC YFLELLQNANFRNAMAHP NK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCFYFLELLQNANFRNAMAHPTNK 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496894|gb|AFK36513.1| unknown [Medicago truncatula]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/108 (86%), Positives = 97/108 (89%), Gaps = 1/108 (0%)

Query: 1   MAASKDNEEASDAPSSP-KKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           MA+  ++    D P SP K +YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASKTESGSPRDTPPSPPKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHP NK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNK 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495082|gb|AFK35607.1| unknown [Lotus japonicus]

 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 97/108 (89%), Gaps = 1/108 (0%)

Query: 1   MAASKDNEEASDA-PSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           M +  D E ++D  PS PK +YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MTSKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQNANFR+AMAHP NK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNK 108

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519184|ref|XP_004166615.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Cucumis sativus]

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 94/100 (94%)

Query: 8   EEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKY 67
           EE +D PSSP  VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKY
Sbjct: 9   EEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKY 68

Query: 68  LQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           LQYWQRPEYIKFIMYPHCL+FLELLQN+NFRNAMAHP NK
Sbjct: 69  LQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNK 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458311|ref|XP_004146891.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Cucumis sativus]

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 91/100 (91%), Positives = 94/100 (94%)

Query: 8   EEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKY 67
           EE +D PSSP  VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKY
Sbjct: 9   EEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKY 68

Query: 68  LQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           LQYWQRPEYIKFIMYPHCL+FLELLQN+NFRNAMAHP NK
Sbjct: 69  LQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNK 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326900|ref|NP_197491.2| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis thaliana] gi|38258620|sp|Q8VYB1.1|MED31_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 31; AltName: Full=Mediator complex subunit 31; AltName: Full=Mediator complex subunit SOH1 gi|18176433|gb|AAL60043.1| putative SOH1 protein [Arabidopsis thaliana] gi|27754239|gb|AAO22573.1| putative SOH1 protein [Arabidopsis thaliana] gi|332005381|gb|AED92764.1| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis thaliana]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/108 (84%), Positives = 98/108 (90%), Gaps = 1/108 (0%)

Query: 1   MAASKD-NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           MA+ ++  ++AS+ PS PK  YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANK 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187779|ref|NP_001190342.1| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis thaliana] gi|332005382|gb|AED92765.1| mediator of RNA polymerase II transcription subunit 31 [Arabidopsis thaliana]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 91/108 (84%), Positives = 98/108 (90%), Gaps = 1/108 (0%)

Query: 1   MAASKD-NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 59
           MA+ ++  ++AS+ PS PK  YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 60  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANK 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116787995|gb|ABK24720.1| unknown [Picea sitchensis]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 97/107 (90%)

Query: 1   MAASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEA 60
           M   K + ++S  PS PK+ YKDPDDGRQRFLLELEF+QCLANPTYIHYLAQNRYF+DEA
Sbjct: 1   MDPGKGSSDSSPLPSIPKEPYKDPDDGRQRFLLELEFIQCLANPTYIHYLAQNRYFDDEA 60

Query: 61  FIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK 107
           FIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQNANFR+AMAHP NK
Sbjct: 61  FIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRSAMAHPTNK 107

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
DICTYBASE|DDB_G0285221	176	med31 "putative mediator compl	0.859	0.556	0.524	8.4e-26
POMBASE|SPCP31B10.03c	139	med31 "mediator complex subuni	0.675	0.553	0.615	3.3e-24
UNIPROTKB|F1N9T5	130	MED31 "Uncharacterized protein	0.710	0.623	0.590	1.1e-23
ZFIN|ZDB-GENE-040718-114	136	med31 "mediator of RNA polymer	0.736	0.617	0.559	1.1e-23
UNIPROTKB|A0JNN3	131	MED31 "Mediator of RNA polymer	0.736	0.641	0.569	2.3e-23
UNIPROTKB|I3LLR7	131	MED31 "Uncharacterized protein	0.736	0.641	0.569	2.3e-23
MGI|MGI:1914529	131	Med31 "mediator of RNA polymer	0.736	0.641	0.569	2.3e-23
RGD|1309457	131	Med31 "mediator complex subuni	0.736	0.641	0.569	2.3e-23
UNIPROTKB|Q9Y3C7	131	MED31 "Mediator of RNA polymer	0.736	0.641	0.569	3.8e-23
FB|FBgn0037262	204	MED31 "Mediator complex subuni	0.666	0.372	0.565	4.8e-23

DICTYBASE|DDB_G0285221 med31 "putative mediator complex subunit 31" [Dictyostelium discoideum (taxid:44689)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 53/101 (52%), Positives = 73/101 (72%)

Query:     6 DNEEASDAPSSPKKV-YKDPDDGRQ--RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFI 62
             DN E+ D       + Y++ ++     RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+
Sbjct:    28 DNGESIDKKDDNIVLPYENDEEEANYLRFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFV 87

Query:    63 GYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAH 103
              YL YLQYW++PEY KFI+YP  LYFL+LLQ   FR  + H
Sbjct:    88 NYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNH 128

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPCP31B10.03c med31 "mediator complex subunit Med31" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 48/78 (61%), Positives = 65/78 (83%)

Query:    22 KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 81
             K PDD + RF +ELEFVQ L+NP Y+++LAQ++YFEDEAF+ YL+Y++YW+ PEY+KFI+
Sbjct:     9 KVPDD-KSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFII 67

Query:    82 YPHCLYFLELLQNANFRN 99
             YP CL+ L LL+N  FRN
Sbjct:    68 YPTCLHMLTLLKNPQFRN 85

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IC

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IPI

GO:0016592 "mediator complex" evidence=IGI;IDA

UNIPROTKB|F1N9T5 MED31 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query:    23 DPDD--GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFI 80
             D DD   R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++
Sbjct:     8 DADDTGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYL 67

Query:    81 MYPHCLYFLELLQNANFRNAMAH 103
              YP CL+ LELLQ  +FR  + +
Sbjct:    68 KYPQCLHMLELLQYEHFRKELVN 90

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

ZFIN|ZDB-GENE-040718-114 med31 "mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 47/84 (55%), Positives = 61/84 (72%)

Query:    20 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKF 79
             V +  +  RQRF LELEFVQCLANP Y+++LAQ  Y  ++ F+ YLKYL YW+ PEY KF
Sbjct:     4 VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKF 63

Query:    80 IMYPHCLYFLELLQNANFRNAMAH 103
             + YPHCL+ LELLQ  +FR  + +
Sbjct:    64 LKYPHCLHMLELLQYEHFRKELVN 87

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A0JNN3 MED31 "Mediator of RNA polymerase II transcription subunit 31" [Bos taurus (taxid:9913)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query:    20 VYKDPDDG--RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 77
             V  + DD   R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY 
Sbjct:     5 VAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYA 64

Query:    78 KFIMYPHCLYFLELLQNANFRNAMAH 103
             K++ YP CL+ LELLQ  +FR  + +
Sbjct:    65 KYLKYPQCLHMLELLQYEHFRKELVN 90

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|I3LLR7 MED31 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query:    20 VYKDPDDG--RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 77
             V  + DD   R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY 
Sbjct:     5 VAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYA 64

Query:    78 KFIMYPHCLYFLELLQNANFRNAMAH 103
             K++ YP CL+ LELLQ  +FR  + +
Sbjct:    65 KYLKYPQCLHMLELLQYEHFRKELVN 90

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:1914529 Med31 "mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query:    20 VYKDPDDG--RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 77
             V  + DD   R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY 
Sbjct:     5 VAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYA 64

Query:    78 KFIMYPHCLYFLELLQNANFRNAMAH 103
             K++ YP CL+ LELLQ  +FR  + +
Sbjct:    65 KYLKYPQCLHMLELLQYEHFRKELVN 90

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0016592 "mediator complex" evidence=IDA

GO:0032403 "protein complex binding" evidence=ISO

RGD|1309457 Med31 "mediator complex subunit 31" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query:    20 VYKDPDDG--RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 77
             V  + DD   R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY 
Sbjct:     5 VAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYA 64

Query:    78 KFIMYPHCLYFLELLQNANFRNAMAH 103
             K++ YP CL+ LELLQ  +FR  + +
Sbjct:    65 KYLKYPQCLHMLELLQYEHFRKELVN 90

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

UNIPROTKB|Q9Y3C7 MED31 "Mediator of RNA polymerase II transcription subunit 31" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query:    20 VYKDPDDG--RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYI 77
             V  + DD   R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY 
Sbjct:     5 VAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYA 64

Query:    78 KFIMYPHCLYFLELLQNANFRNAMAH 103
             K++ YP CL+ LELLQ  +FR  + +
Sbjct:    65 KYLKYPQCLHMLELLQYEHFRKELVN 90

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0037262 MED31 "Mediator complex subunit 31" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 43/76 (56%), Positives = 63/76 (82%)

Query:    28 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 87
             ++R+ +ELEFVQCL+NP Y+++LAQ  +F+D++FI YLKYLQYW+ P+Y K++MYP CLY
Sbjct:    19 KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLY 78

Query:    88 FLELLQNANFRNAMAH 103
             FL+LLQ  +FR  + +
Sbjct:    79 FLDLLQYEHFRREIVN 94

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS;IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008595 "anterior/posterior axis specification, embryo" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28FE2	MED31_XENTR	No assigned EC number	0.5696	0.6929	0.6171	yes	no
Q9CXU1	MED31_MOUSE	No assigned EC number	0.5731	0.7192	0.6259	yes	no
Q8VYB1	MED31_ARATH	No assigned EC number	0.8425	0.9385	0.5459	yes	no
Q9Y3C7	MED31_HUMAN	No assigned EC number	0.5731	0.7192	0.6259	yes	no
Q6DH26	MED31_DANRE	No assigned EC number	0.5662	0.7280	0.6102	yes	no
A0JNN3	MED31_BOVIN	No assigned EC number	0.5731	0.7192	0.6259	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam05669	103	pfam05669, Med31, SOH1	1e-41
COG5088	114	COG5088, SOH1, Rad5p-binding protein [General func	1e-28

>gnl|CDD|218682 pfam05669, Med31, SOH1

 Score =  132 bits (334), Expect = 1e-41
 Identities = 50/79 (63%), Positives = 63/79 (79%)

Query: 26  DGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHC 85
           +   RF +ELEFVQ LANP Y+++LAQ  YFED  FI YLKYLQYW+ PEY K+I+YP+C
Sbjct: 1   EDPTRFEIELEFVQSLANPQYLNFLAQQGYFEDPRFINYLKYLQYWREPEYAKYIVYPNC 60

Query: 86  LYFLELLQNANFRNAMAHP 104
           L+ LELLQN NFR A+++P
Sbjct: 61  LHMLELLQNENFRRAISNP 79

The family consists of Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes. Length = 103

>gnl|CDD|227420 COG5088, SOH1, Rad5p-binding protein [General function prediction only]

 Score =   99 bits (249), Expect = 1e-28
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 22 KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIM 81
            P     RF +ELEFVQ LANP Y+  L Q + FE E F  YLKYL+YW+ PEY +FI+
Sbjct: 9  ATPSSD-SRFEVELEFVQSLANPQYLTLLTQQQIFESENFKNYLKYLEYWRNPEYSQFIV 67

Query: 82 YPHCLYFLELLQNANFRN 99
          YP+CL+ L+LL       
Sbjct: 68 YPNCLFILKLLNGFMESA 85

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PF05669	101	Med31: SOH1; InterPro: IPR008831 The Mediator comp	100.0
KOG4086	130	consensus Transcriptional regulator SOH1 [Transcri	100.0
COG5088	114	SOH1 Rad5p-binding protein [General function predi	100.0

>PF05669 Med31: SOH1; InterPro: IPR008831 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=2.9e-49  Score=283.82  Aligned_cols=85  Identities=66%  Similarity=1.198  Sum_probs=70.9

Q ss_pred             ccchhHHHHHHHHhhcChHHHHHHHHcccCCCHHHHHHHHHHhhhcCCCccccccChhHHHHHHhhCChHHHHHhcCchH
Q 033637           27 GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPAN  106 (114)
Q Consensus        27 ~~~RFe~ELEFVQ~LANP~YL~~LA~~gy~~d~~FinYLkYL~YWk~PeYak~l~YP~cL~~L~LLq~~~FR~~i~~p~~  106 (114)
                      +++|||+|||||||||||+||+|||++|||+||+|+||||||+|||+|+|+|||+||+||+||+|||+++||++|++|++
T Consensus         1 ~~~RFe~ELEFVQ~LaNp~Yl~~La~~~y~~d~~F~nYLkYL~YW~~P~Yakyl~YP~cL~~L~LLq~~~FR~~i~~~~~   80 (101)
T PF05669_consen    1 NPTRFELELEFVQCLANPQYLNYLAQQGYFEDPAFINYLKYLQYWKRPEYAKYLVYPHCLHFLELLQNEEFRQAIANPDF   80 (101)
T ss_dssp             ---HHHHHHHHHHHTTSHHHHHHHH-SGGGTSTHHHHHHHHGGGGGSTTGGGG-SSTHHHHHHH-HHHHHHHH--B-TTS
T ss_pred             CcchhHHHHHHHHHhcCHHHHHHHHhcCccCCHHHHHHHHHHHHhCCCchhhhhcChHHHHHHHHHCcHHHHHHHhCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q 033637          107 KVRLC  111 (114)
Q Consensus       107 ~~~l~  111 (114)
                      ++.+.
T Consensus        81 ~~~i~   85 (101)
T PF05669_consen   81 AKFIM   85 (101)
T ss_dssp             -----
T ss_pred             cchhc
Confidence            88764

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med31 of the Mediator complex. It contains the Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant [] and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent, 0016592 mediator complex; PDB: 3FBI_D 3FBN_D.

>KOG4086 consensus Transcriptional regulator SOH1 [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=8.7e-45  Score=270.02  Aligned_cols=83  Identities=58%  Similarity=1.124  Sum_probs=80.2

Q ss_pred             cchhHHHHHHHHhhcChHHHHHHHHcccCCCHHHHHHHHHHhhhcCCCccccccChhHHHHHHhhCChHHHHHhcCchHH
Q 033637           28 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK  107 (114)
Q Consensus        28 ~~RFe~ELEFVQ~LANP~YL~~LA~~gy~~d~~FinYLkYL~YWk~PeYak~l~YP~cL~~L~LLq~~~FR~~i~~p~~~  107 (114)
                      +.|||+|||||||||||+||+||||+|||+|++|+||||||+|||+|+|+|||+||+|||||++||++.||..|++.+..
T Consensus        14 ~~RFevELEFVQ~LaNp~YLnfLaQ~g~fk~e~F~nYLkYLeYWk~PeYak~l~YP~CL~mLelL~~~~fr~~i~~~~~~   93 (130)
T KOG4086|consen   14 RSRFEVELEFVQCLANPNYLNFLAQRGYFKDEAFVNYLKYLEYWKEPEYAKFLKYPQCLHMLELLQSEQFRDEISNAQLA   93 (130)
T ss_pred             CcchhhhHHHHHHhcChHHHHHHHHcccccCHHHHHHHHHHHHhcCccHHHHHhhHhHHHHHHHhccHHHHHHHhhhHHH
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hhh
Q 033637          108 VRL  110 (114)
Q Consensus       108 ~~l  110 (114)
                      +.+
T Consensus        94 k~l   96 (130)
T KOG4086|consen   94 KFL   96 (130)
T ss_pred             HHh
Confidence            765

>COG5088 SOH1 Rad5p-binding protein [General function prediction only]

Probab=100.00  E-value=3.7e-39  Score=235.36  Aligned_cols=83  Identities=47%  Similarity=0.871  Sum_probs=80.0

Q ss_pred             cchhHHHHHHHHhhcChHHHHHHHHcccCCCHHHHHHHHHHhhhcCCCccccccChhHHHHHHhhCChHHHHHhcCchHH
Q 033637           28 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANK  107 (114)
Q Consensus        28 ~~RFe~ELEFVQ~LANP~YL~~LA~~gy~~d~~FinYLkYL~YWk~PeYak~l~YP~cL~~L~LLq~~~FR~~i~~p~~~  107 (114)
                      .+|||+||||||+||||+||++|+|+|+|+|++|.+||+||+|||.|||+|||+||+||+||++|+++.||..+.+.++.
T Consensus        14 ~sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fese~F~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~~~l~   93 (114)
T COG5088          14 DSRFEVELEFVQSLANPQYLTLLTQQQIFESENFKNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSEDGLL   93 (114)
T ss_pred             CchhHHHHHHHHHhcCHHHHHHHHHhhhhcCHHHHHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhhhHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhh
Q 033637          108 VRL  110 (114)
Q Consensus       108 ~~l  110 (114)
                      +.+
T Consensus        94 ~~l   96 (114)
T COG5088          94 EGL   96 (114)
T ss_pred             Hhh
Confidence            765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3fbi_B	130	Structure Of The Mediator Submodule Med7n31 Length		1e-12
3fbn_B	130	Structure Of The Mediator Submodule Med7n31 Length		2e-12

>pdb|3FBI|B Chain B, Structure Of The Mediator Submodule Med7n31 Length = 130

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 3  ASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAF 61
           S  +    +AP++P     D +    RF +ELEF+Q LAN  Y+ YL  Q + ++   F
Sbjct: 1  GSHXSSTNGNAPATPSS---DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNF 57
Query: 62 IGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 92
            YLKYL+YW  P Y + I+YP+CL+ L+LL
Sbjct: 58 KNYLKYLEYWCNPPYSQCIVYPNCLFILKLL 88

>pdb|3FBN|B Chain B, Structure Of The Mediator Submodule Med7n31 Length = 130

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 3  ASKDNEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAF 61
           S  +    +AP++P     D +    RF +ELEF+Q LAN  Y+ YL  Q + ++   F
Sbjct: 1  GSHMSSTNGNAPATPSS---DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNF 57
Query: 62 IGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 92
            YLKYL+YW  P Y + I+YP+CL+ L+LL
Sbjct: 58 KNYLKYLEYWCNPPYSQCIVYPNCLFILKLL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3fbi_B	130	Mediator of RNA polymerase II transcription subuni	2e-38

>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B Length = 130

 Score =  124 bits (313), Expect = 2e-38
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 7   NEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYL 65
           +  +S   ++P     D +    RF +ELEF+Q LAN  Y+ YL  Q + ++   F  YL
Sbjct: 2   SHMSSTNGNAPATPSSDQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYL 61

Query: 66  KYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHP 104
           KYL+YW  P Y + I+YP+CL+ L+LL        +   
Sbjct: 62  KYLEYWCNPPYSQCIVYPNCLFILKLLNGFMESAIVNED 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3fbi_B	130	Mediator of RNA polymerase II transcription subuni	100.0

>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B

Probab=100.00  E-value=3.3e-46  Score=276.86  Aligned_cols=83  Identities=41%  Similarity=0.827  Sum_probs=77.5

Q ss_pred             CCccccchhHHHHHHHHhhcChHHHHHH-HHcccCCCHHHHHHHHHHhhhcCCCccccccChhHHHHHHhhCChHHHHHh
Q 033637           23 DPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAM  101 (114)
Q Consensus        23 ~~~~~~~RFe~ELEFVQ~LANP~YL~~L-A~~gy~~d~~FinYLkYL~YWk~PeYak~l~YP~cL~~L~LLq~~~FR~~i  101 (114)
                      +....++|||+|||||||||||+||+|| |++|||+||+|+||||||+|||+|+|+|||+||+||+||+|||+ .||++|
T Consensus        18 ~~~~l~~RFe~ELEFVQ~LANP~YL~~Llaq~gy~~d~~FinYLkYL~YWk~PeYakyl~YP~cL~~L~LLq~-~fr~ai   96 (130)
T 3fbi_B           18 DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLLNG-FMESAI   96 (130)
T ss_dssp             -CCCCCCHHHHHHHHHHHTTSHHHHHHHHTCSGGGTSTHHHHHHHHGGGGGSTTGGGGCSCTHHHHHHHHHHH-HHHHCC
T ss_pred             ccCcchhHHHHHHHHHHHhcCHHHHHHHHHHcccccCHHHHHHHHHHHHhcCCCchhHhcCccHHHHHHHHHH-HHHHHH
Confidence            3344589999999999999999999998 78899999999999999999999999999999999999999996 999999


Q ss_pred             cCchH
Q 033637          102 AHPAN  106 (114)
Q Consensus       102 ~~p~~  106 (114)
                      +||+.
T Consensus        97 ~nedg  101 (130)
T 3fbi_B           97 VNEDG  101 (130)
T ss_dssp             BCSSS
T ss_pred             hCcch
Confidence            99874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00