Citrus Sinensis ID: 033650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHccccEEEEEEccccEEEEEEEccccEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccEcHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvvppprrplktyqpsepyvlKMHLTNKYVSaqvvhsptatvassASSQEKALRSTIGCTRDVAAASKIGKLLGErlllkdipaVSVFLKREQRYHGKVKAIIDSLREAGVKLL
Flexible Loop (DISEMBL)
mvvppprrplktyqpsePYVLKMHLTNKYVSAQVVHSPTatvassassqEKALRSTIGCTRDVAAASKIGKllgerlllkdiPAVSvflkreqryhgkvkAIIDSLREAGVKLL
Low Complexity Region (SEG)
MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQvvhsptatvassassQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL
Disordered region (IsUnstruct)
******************YVLKMHLTNKYVSAQVV*******************STIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSL********
Disordered Region (DISOPRED)
****P*R********SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEK***********VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL
Disordered Region (DISEMBL)
MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHS*******************IGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL
Disordered Region (DISPRO)
****PPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV*LL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
A8IAP8	120	50S ribosomal protein L18	yes	no	0.921	0.875	0.383	9e-12
B6EPU1	117	50S ribosomal protein L18	yes	no	0.807	0.786	0.430	1e-11
A7IPQ4	120	50S ribosomal protein L18	yes	no	0.921	0.875	0.364	2e-11
Q89A81	121	50S ribosomal protein L18	yes	no	0.877	0.826	0.368	2e-11
Q5E898	117	50S ribosomal protein L18	yes	no	0.807	0.786	0.419	3e-11
B5FG25	117	50S ribosomal protein L18	yes	no	0.807	0.786	0.419	3e-11
C0QW11	118	50S ribosomal protein L18	yes	no	0.868	0.838	0.413	5e-11
P52863	117	50S ribosomal protein L18	N/A	no	0.807	0.786	0.408	7e-11
A7HM36	122	50S ribosomal protein L18	yes	no	0.850	0.795	0.373	1e-10
Q3IJK1	116	50S ribosomal protein L18	yes	no	0.798	0.784	0.408	3e-10

>sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplR PE=3 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 7   RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
           RR ++      P  L +H T+K++ AQ++         +ASS EK LRS++    DV AA
Sbjct: 16  RRAIRAAANGRPR-LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAA 74

Query: 67  SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
             IGKL+ ER   K + AV VF +    YHG+VKA+ +  RE G++ 
Sbjct: 75  KAIGKLVAERATAKGVTAV-VFDRGAYIYHGRVKALAEGAREGGLQF 120

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

>sp|B6EPU1|RL18_ALISL 50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T ++  AQV+    + V ++AS+ EKA+R  +G T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
            I  V+ F +   +YHG+V A+ DS REAG+K 
Sbjct: 86  GITNVA-FDRSGFQYHGRVAALADSAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Aliivibrio salmonicida (strain LFI1238) (taxid: 316275)

>sp|A7IPQ4|RL18_XANP2 50S ribosomal protein L18 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplR PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 7   RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
           RR ++      P  L +H T++++ AQV+        ++ASS EK LR+++    D  AA
Sbjct: 16  RRAIRVAANGRPR-LSVHRTSQHIYAQVIDDANGETLAAASSLEKDLRTSLKTGADTDAA 74

Query: 67  SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
             IGKL+ ER L K + AV VF +    +HG+VKA+ +  RE G++ 
Sbjct: 75  KTIGKLVAERALAKGVTAV-VFDRGAYIFHGRVKALAEGAREGGLQF 120

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

>sp|Q89A81|RL18_BUCBP 50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rplR PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 13  YQPSEPYVLKM--HLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIG 70
           +Q  + +++++  H T+K++ AQ++ S  A V +SAS+ EK + + +  T ++ A+  IG
Sbjct: 20  FQIKKLHLIRLVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIG 79

Query: 71  KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
           K + ER L+K I  VS F +   +YHG+VKA+ D+ RE+G+K 
Sbjct: 80  KKIAERALMKGIINVS-FDRSGFQYHGRVKALADAARESGLKF 121

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

>sp|Q5E898|RL18_VIBF1 50S ribosomal protein L18 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplR PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T ++  AQV+    + V ++AS+ EKA+R  +G T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGSTSNKAAAEAIGKLIAERAIEK 85

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
            I  V+ F +   +YHG+V A+ +S REAG+K 
Sbjct: 86  GITNVA-FDRSGFQYHGRVAALAESAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Vibrio fischeri (strain ATCC 700601 / ES114) (taxid: 312309)

>sp|B5FG25|RL18_VIBFM 50S ribosomal protein L18 OS=Vibrio fischeri (strain MJ11) GN=rplR PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T ++  AQV+    + V ++AS+ EKA+R  +G T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGNTSNKAAAEAIGKLIAERAIEK 85

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
            I  V+ F +   +YHG+V A+ +S REAG+K 
Sbjct: 86  GITNVA-FDRSGFQYHGRVAALAESAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Vibrio fischeri (strain MJ11) (taxid: 388396)

>sp|C0QW11|RL18_BRAHW 50S ribosomal protein L18 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplR PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 5/104 (4%)

Query: 10  LKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKI 69
           +K    SE   L +H + KYVSAQ++        +SASSQEK L+S     ++V  A +I
Sbjct: 20  IKIEGSSERPRLTVHKSLKYVSAQIIDDSKGITLASASSQEKDLKS----GKNVDIAKEI 75

Query: 70  GKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
           GK+L  R   K+I  V VF +    YHGK+K++ D  REAG+K 
Sbjct: 76  GKVLATRAKEKNISEV-VFDRNGYIYHGKIKSLADGAREAGLKF 118

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) (taxid: 565034)

>sp|P52863|RL18_VIBPR 50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T ++V AQV+ S  + V ++AS+ EKA+R  +  T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
            +  V+ F +   +YHG+V A+ +S REAG+K 
Sbjct: 86  GVETVA-FDRSGFQYHGRVAALAESAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Vibrio proteolyticus (taxid: 671)

>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 15  PSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLG 74
           P  P  L +  + K++ AQ++         +AS+ EKA++  +  T ++ AA ++GKL+ 
Sbjct: 26  PERPR-LAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIA 84

Query: 75  ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
           ER L K I  V VF +   +YHG+VKA+ D+ REAG+K 
Sbjct: 85  ERALAKGIKEV-VFDRGGFKYHGRVKALADAAREAGLKF 122

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) (taxid: 381764)

>sp|Q3IJK1|RL18_PSEHT 50S ribosomal protein L18 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplR PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 2/93 (2%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T +++ AQVV +   TV ++AS+ EKA+  T+  T +VAAA  +GK + ER   K
Sbjct: 26  LVIHRTPRHIYAQVV-TAEGTVLAAASTVEKAICETVKGTGNVAAAQAVGKAVAERAADK 84

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
            I  ++ F +   +YHG+VKA+ D+ REAG++ 
Sbjct: 85  GIEKIA-FDRSGFKYHGRVKALADAAREAGLQF 116

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
224096087	114	predicted protein [Populus trichocarpa]	1.0	1.0	0.745	3e-43
297812923	114	ribosomal protein L18 family protein [Ar	1.0	1.0	0.745	7e-43
15241056	114	Ribosomal L18p/L5e family protein [Arabi	1.0	1.0	0.745	7e-43
449453185	114	PREDICTED: 50S ribosomal protein L18-lik	1.0	1.0	0.754	1e-41
357444863	114	50S ribosomal protein L18 [Medicago trun	0.885	0.885	0.841	3e-41
255542770	115	50S ribosomal protein L18, putative [Ric	1.0	0.991	0.721	1e-40
226496289	114	50S ribosomal protein L18 [Zea mays] gi|	1.0	1.0	0.728	1e-40
147798815	241	hypothetical protein VITISV_043330 [Viti	1.0	0.473	0.719	2e-40
357129656	114	PREDICTED: 50S ribosomal protein L18-lik	1.0	1.0	0.710	2e-40
351720997	114	uncharacterized protein LOC100526952 [Gl	0.885	0.885	0.811	2e-40

>gi|224096087|ref|XP_002310534.1| predicted protein [Populus trichocarpa] gi|222853437|gb|EEE90984.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 100/114 (87%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PPP R  +  Q  +PYVLKMH TN+YV+AQV HSPTATVAS+ASSQEKALRST+  T
Sbjct: 1   MVIPPPVRAPRVTQFLKPYVLKMHFTNQYVNAQVTHSPTATVASAASSQEKALRSTMENT 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAA+KIGK+LGERLLLKDIPAV+VFL R Q+YHGKVKA+IDSLRE G+K++
Sbjct: 61  RDVAAAAKIGKILGERLLLKDIPAVTVFLNRNQKYHGKVKAVIDSLREVGIKII 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812923|ref|XP_002874345.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp. lyrata] gi|297320182|gb|EFH50604.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 100/114 (87%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PP  RP + +   +PYVLKMH TNK+V AQV+HSPTATVA SASSQEKALR T+  T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAA+KIGK+LGERLL+KDIPAV++ +KREQRYHGKVKA+IDS+REAGVKLL
Sbjct: 61  RDVAAAAKIGKILGERLLMKDIPAVTIQMKREQRYHGKVKAVIDSVREAGVKLL 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241056|ref|NP_198134.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana] gi|21554086|gb|AAM63167.1| unknown [Arabidopsis thaliana] gi|88011066|gb|ABD38897.1| At5g27820 [Arabidopsis thaliana] gi|332006345|gb|AED93728.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 100/114 (87%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PP  RP + +   +PYVLKMH TNK+V AQV+HSPTATVA SASSQEKALR T+  T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAASKIGK+LGERLL+KDIPAV++ +K+EQRYHGKVKA+IDS+REAGVKLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453185|ref|XP_004144339.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus] gi|449480883|ref|XP_004156021.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 100/114 (87%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PPP +P +  Q  +PYVLKMH TNK+VSAQV+HS TA VAS+ASSQEKAL+S++  T
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAA+KIGKLLGERLLLK IPAV V LKREQRYHGKVKA+IDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444863|ref|XP_003592709.1| 50S ribosomal protein L18 [Medicago truncatula] gi|355481757|gb|AES62960.1| 50S ribosomal protein L18 [Medicago truncatula]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 93/101 (92%)

Query: 14  QPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLL 73
           Q  +PYVLKMH TNKYVSAQV+H+PTATVASSASSQEKALRS++  TRDVAAA+KIGKLL
Sbjct: 14  QYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLL 73

Query: 74  GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
            ERL LKDIPAVSV LKREQRYHGKVKA+IDSLREAGV+LL
Sbjct: 74  AERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542770|ref|XP_002512448.1| 50S ribosomal protein L18, putative [Ricinus communis] gi|223548409|gb|EEF49900.1| 50S ribosomal protein L18, putative [Ricinus communis]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 1   MVVPPP-RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGC 59
           MV+PPP + P +     +PYVLKMH TNK+VSAQV+HSP+ATVA SASSQEKALR ++  
Sbjct: 1   MVIPPPVKWPPRVADFLKPYVLKMHFTNKFVSAQVIHSPSATVACSASSQEKALRPSMEN 60

Query: 60  TRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           TRDVAAA+KIGK+LGERLL+K IPA+SVFLKREQ+YHGKVKA++DS+RE+GVKLL
Sbjct: 61  TRDVAAAAKIGKILGERLLVKGIPAISVFLKREQKYHGKVKAVVDSVRESGVKLL 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496289|ref|NP_001152098.1| 50S ribosomal protein L18 [Zea mays] gi|226510381|ref|NP_001150322.1| 50S ribosomal protein L18 [Zea mays] gi|195608440|gb|ACG26050.1| 50S ribosomal protein L18 [Zea mays] gi|195609138|gb|ACG26399.1| 50S ribosomal protein L18 [Zea mays] gi|195638354|gb|ACG38645.1| 50S ribosomal protein L18 [Zea mays] gi|195652601|gb|ACG45768.1| 50S ribosomal protein L18 [Zea mays] gi|223943857|gb|ACN26012.1| unknown [Zea mays] gi|414588054|tpg|DAA38625.1| TPA: 50S ribosomal protein L18 isoform 1 [Zea mays] gi|414588055|tpg|DAA38626.1| TPA: 50S ribosomal protein L18 isoform 2 [Zea mays]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/114 (72%), Positives = 98/114 (85%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PPP R  +  +  +PY+L+MH +NKYVSAQVVH+PTATVA SASSQEK LR  +  T
Sbjct: 1   MVIPPPARAARVTRFLKPYLLRMHFSNKYVSAQVVHTPTATVACSASSQEKLLRPNMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAA+KIGKLLGERLLLK IPAVS+ +KREQ+YHGKVKA+IDS+REAGVKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVSIHMKREQKYHGKVKAVIDSVREAGVKLL 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798815|emb|CAN74240.1| hypothetical protein VITISV_043330 [Vitis vinifera]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 100/114 (87%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PPP +P +  +  +PYVLKMH TNK+V+AQV+HSPTATVAS+ASSQEK LRST+  T
Sbjct: 1   MVIPPPVKPPRIMKFLKPYVLKMHFTNKFVNAQVIHSPTATVASAASSQEKTLRSTMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAA+ IGK+LGERLLL+DIPAV+VFLKR+Q+YHGKVKA+IDSLREA   L+
Sbjct: 61  RDVAAAAMIGKILGERLLLQDIPAVTVFLKRDQKYHGKVKAVIDSLREAYFCLI 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357129656|ref|XP_003566477.1| PREDICTED: 50S ribosomal protein L18-like [Brachypodium distachyon]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 98/114 (85%)

Query: 1   MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT 60
           MV+PPP R  +     +PY+L+MH +NKYVSAQV+H+PTATVA SASSQEK LRS +  T
Sbjct: 1   MVIPPPDRAARIVSYLKPYLLRMHFSNKYVSAQVIHTPTATVACSASSQEKLLRSDLEST 60

Query: 61  RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
           RDVAAA+KIGKLLGER+LLK IPAVS+ +KREQ+YHGKV+A+IDS+REAGVKLL
Sbjct: 61  RDVAAAAKIGKLLGERMLLKGIPAVSIHMKREQKYHGKVRAVIDSVREAGVKLL 114

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720997|ref|NP_001236427.1| uncharacterized protein LOC100526952 [Glycine max] gi|255631236|gb|ACU15985.1| unknown [Glycine max]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query: 14  QPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLL 73
           Q  +PYVLKMH TNKYVSAQV+H+PTATV SSASSQEKALRS++  +RDVAAA+KIGK+L
Sbjct: 14  QFLKPYVLKMHFTNKYVSAQVIHTPTATVVSSASSQEKALRSSLETSRDVAAAAKIGKIL 73

Query: 74  GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
            ERLLLKDIPAVSV LKREQ+YHGKVKA+IDS+REAGVKLL
Sbjct: 74  AERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2180310	114	AT5G27820 [Arabidopsis thalian	1.0	1.0	0.631	2.5e-33
UNIPROTKB|Q9KP00	117	rplR "50S ribosomal protein L1	0.798	0.777	0.358	1.1e-09
TIGR_CMR|VC_2580	117	VC_2580 "ribosomal protein L18	0.798	0.777	0.358	1.1e-09
UNIPROTKB|P0C018	117	rplR "50S ribosomal subunit pr	0.798	0.777	0.336	8.7e-08
TIGR_CMR|SO_0247	116	SO_0247 "ribosomal protein L18	0.789	0.775	0.315	2.9e-07
TIGR_CMR|CHY_2293	122	CHY_2293 "ribosomal protein L1	0.842	0.786	0.306	3.8e-07
TIGR_CMR|CPS_0617	117	CPS_0617 "ribosomal protein L1	0.754	0.735	0.310	6.1e-07
TAIR|locus:2087535	187	AT3G20230 [Arabidopsis thalian	0.938	0.572	0.266	6.1e-07
TIGR_CMR|SPO_0501	119	SPO_0501 "ribosomal protein L1	0.789	0.756	0.322	1e-06
TAIR|locus:1005716736	234	AT1G08845 [Arabidopsis thalian	0.885	0.431	0.227	1.9e-06

TAIR|locus:2180310 AT5G27820 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 72/114 (63%), Positives = 86/114 (75%)

Query:     1 MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCT 60
             MV+PP  RP + +   +PYVLKMH TNK+V AQ               QEKALR T+  T
Sbjct:     1 MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query:    61 RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
             RDVAAASKIGK+LGERLL+KDIPAV++ +K+EQRYHGKVKA+IDS+REAGVKLL
Sbjct:    61 RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

UNIPROTKB|Q9KP00 rplR "50S ribosomal protein L18" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/92 (35%), Positives = 49/92 (53%)

Query:    21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
             L +H T ++V AQ                EKA+R  +  T ++ AA  +GK + ER L K
Sbjct:    26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85

Query:    81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
              +  V+ F +   +YHG+V A+ DS REAG+K
Sbjct:    86 GVTVVA-FDRSGFQYHGRVAALADSAREAGLK 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2580 VC_2580 "ribosomal protein L18" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 33/92 (35%), Positives = 49/92 (53%)

Query:    21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
             L +H T ++V AQ                EKA+R  +  T ++ AA  +GK + ER L K
Sbjct:    26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85

Query:    81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
              +  V+ F +   +YHG+V A+ DS REAG+K
Sbjct:    86 GVTVVA-FDRSGFQYHGRVAALADSAREAGLK 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0C018 rplR "50S ribosomal subunit protein L18" [Escherichia coli K-12 (taxid:83333)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%)

Query:    21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
             L +H T +++ AQ                EKA+   +  T +  AA+ +GK + ER L K
Sbjct:    26 LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 85

Query:    81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
              I  VS F +   +YHG+V+A+ D+ REAG++
Sbjct:    86 GIKDVS-FDRSGFQYHGRVQALADAAREAGLQ 116

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|SO_0247 SO_0247 "ribosomal protein L18" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 29/92 (31%), Positives = 49/92 (53%)

Query:    21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
             L +H T +++ AQ                EKA++  +  T +V AA  +GK + ER + K
Sbjct:    26 LVVHRTPRHIYAQVINPEAQVVAAASTV-EKAVKEQLKSTGNVDAAKAVGKFVAERAIEK 84

Query:    81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
              +  V+ F +   +YHG+V A+ D+ REAG++
Sbjct:    85 GVTNVA-FDRSGFKYHGRVAALADAAREAGLQ 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_2293 CHY_2293 "ribosomal protein L18" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 30/98 (30%), Positives = 48/98 (48%)

Query:    15 PSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLG 74
             P  P  L ++ + K++ AQ                +  LR  IG   ++ AA  +G+L+ 
Sbjct:    26 PERPR-LNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGYGGNIEAAKAVGRLIA 84

Query:    75 ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
             ER   K I  V VF +    YHG+VKA+ ++ RE G++
Sbjct:    85 ERAKAKGIEKV-VFDRGGYLYHGRVKALAEAAREGGLQ 121

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_0617 CPS_0617 "ribosomal protein L18" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query:    26 TNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
             T +++ AQ                +K + + I  T +VAAA+ +GK + ER + K I  +
Sbjct:    31 TPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGNVAAATAVGKAIAERAVAKGITKI 90

Query:    86 SVFLKREQRYHGKVKAIIDSLREAGVK 112
             + F +    YHG+VKA+ ++ REAG++
Sbjct:    91 A-FDRSGFLYHGRVKALAEAAREAGLQ 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TAIR|locus:2087535 AT3G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 29/109 (26%), Positives = 52/109 (47%)

Query:     5 PPRRPLK--TYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRD 62
             P R+  K  T     P++L +  + K++ A+                 + +R+ I    D
Sbjct:    75 PNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVD 134

Query:    63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111
               A   IGKL+ ER +  D+ AVS   ++ +R  GK+  +ID+++E G+
Sbjct:   135 NEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|SPO_0501 SPO_0501 "ribosomal protein L18" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 30/93 (32%), Positives = 45/93 (48%)

Query:    21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
             L +H +NK +SAQ                EK L   +G   +V AA K+G  + ER    
Sbjct:    30 LSVHRSNKNISAQLIDDVRGVTLAAASTMEKDL-GVVG-KNNVEAAKKVGAAIAERAKKA 87

Query:    81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
              +   + F +    +HGKVKA+ D+ RE G+K+
Sbjct:    88 GVEE-AYFDRGGFLFHGKVKALADAAREGGLKI 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TAIR|locus:1005716736 AT1G08845 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 23/101 (22%), Positives = 48/101 (47%)

Query:    11 KTYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIG 70
             +T    EP+ L + ++ ++VSA                  K +++ +    D+ A   IG
Sbjct:   127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query:    71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111
             ++L ER    D+   S   + + ++ GK++A++ SL + G+
Sbjct:   187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q11HR8	RL18_MESSB	No assigned EC number	0.3644	0.9210	0.8823	yes	no
Q1MIC5	RL18_RHIL3	No assigned EC number	0.3644	0.9210	0.875	yes	no
B8E1E9	RL18_DICTD	No assigned EC number	0.3725	0.8771	0.8196	yes	no
Q89A81	RL18_BUCBP	No assigned EC number	0.3689	0.8771	0.8264	yes	no
B8D9T1	RL18_BUCA5	No assigned EC number	0.3391	0.9736	0.9098	yes	no
A7IPQ4	RL18_XANP2	No assigned EC number	0.3644	0.9210	0.875	yes	no
B5YDV9	RL18_DICT6	No assigned EC number	0.3333	0.9824	0.9180	yes	no
B5ZYV1	RL18_RHILW	No assigned EC number	0.3457	0.9210	0.875	yes	no
A1WVA6	RL18_HALHL	No assigned EC number	0.3789	0.8245	0.8034	yes	no
P57575	RL18_BUCAI	No assigned EC number	0.3391	0.9736	0.9098	yes	no
B9JDU4	RL18_AGRRK	No assigned EC number	0.3364	0.9210	0.875	yes	no
A4XZ74	RL18_PSEMY	No assigned EC number	0.3608	0.8245	0.8103	yes	no
B8D833	RL18_BUCAT	No assigned EC number	0.3391	0.9736	0.9098	yes	no
C0QW11	RL18_BRAHW	No assigned EC number	0.4134	0.8684	0.8389	yes	no
B6IRS2	RL18_RHOCS	No assigned EC number	0.3457	0.9210	0.875	yes	no
A8IAP8	RL18_AZOC5	No assigned EC number	0.3831	0.9210	0.875	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
cd00432	103	cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18	4e-25
PRK05593	117	PRK05593, rplR, 50S ribosomal protein L18; Reviewe	2e-15
pfam00861	119	pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami	3e-14
CHL00139	109	CHL00139, rpl18, ribosomal protein L18; Validated	7e-14
TIGR00060	114	TIGR00060, L18_bact, ribosomal protein L18, bacter	7e-14
COG0256	125	COG0256, RplR, Ribosomal protein L18 [Translation,	1e-13
PTZ00032	211	PTZ00032, PTZ00032, 60S ribosomal protein L18; Pro	1e-05

>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

 Score = 90.3 bits (225), Expect = 4e-25
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 11  KTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIG 70
           K     E   L +  +NK++ AQ++         SAS+ E A++  +G   +V AA  +G
Sbjct: 4   KRLGTQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVG 63

Query: 71  KLLGERLLLKDIPAVSVFLKRE-QRYHGKVKAIIDSLREAGV 111
           +LL +R L K I    V   R   RYHG+VKA+    RE G+
Sbjct: 64  RLLAKRALEKGI--KKVVFDRGGYRYHGRVKALAKGAREGGL 103

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Length = 103

>gnl|CDD|235524 PRK05593, rplR, 50S ribosomal protein L18; Reviewed

 Score = 65.9 bits (162), Expect = 2e-15
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 26  TNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
           +N+++ AQV+        +SAS+ EK +R+ +    +  AA K+GKL+ ER   K I  V
Sbjct: 32  SNRHIYAQVIDDVKGKTLASASTLEKDVRAGLK-GGNKEAAKKVGKLIAERAKAKGIKQV 90

Query: 86  SVFLKREQRYHGKVKAIIDSLREAGVK 112
            VF +   +YHG+VKA+ D+ REAG+K
Sbjct: 91  -VFDRGGYKYHGRVKALADAAREAGLK 116

Length = 117

>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family

 Score = 63.0 bits (154), Expect = 3e-14
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 16  SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRS--TIGCTRDVAAASKIGKLL 73
           +E   L +  +NK++ AQ++         SAS+  K L+     G   + AAA  +G LL
Sbjct: 21  AERPRLVVRRSNKHIYAQIIDDTKGGTLVSASTLSKELKKYGLKGGGNNTAAAYLVGLLL 80

Query: 74  GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
            +R L K I  V         YHG+V A+    REAG+  
Sbjct: 81  AKRALKKGIAVVVFDRGGYT-YHGRVFALAKGAREAGLNF 119

This family includes ribosomal proteins from the large subunit. This family includes L18 from bacteria and L5 from eukaryotes. It has been shown that the amino terminal 93 amino acids of rat Rpl5 are necessary and sufficient to bind 5S rRNA in vitro. Suggesting that the entire family has a function in rRNA binding. Length = 119

>gnl|CDD|214373 CHL00139, rpl18, ribosomal protein L18; Validated

 Score = 62.0 bits (151), Expect = 7e-14
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 15  PSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLG 74
            +E   L +  +NK++ AQ++         + S+ E  ++S++  T    A+  +G+ L 
Sbjct: 12  TAERPRLSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLA 71

Query: 75  ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
           ++ L K I  V VF +  + YHG++KA+ ++ REAG++
Sbjct: 72  KKSLKKGITKV-VFDRGGKLYHGRIKALAEAAREAGLQ 108

Length = 109

>gnl|CDD|213499 TIGR00060, L18_bact, ribosomal protein L18, bacterial type

 Score = 62.1 bits (151), Expect = 7e-14
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 20  VLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLL 79
            L +  +N+++ AQV+    + V +SAS+ EK L+ T     +  AA K+GKL+ ERL  
Sbjct: 26  RLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLKYT----GNKDAAKKVGKLVAERLKE 81

Query: 80  KDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
           K I  V VF +   +YHG+V A+ ++ REAG+  
Sbjct: 82  KGIKDV-VFDRGGYKYHGRVAALAEAAREAGLNF 114

The archaeal and eukaryotic type rpL18 is not detectable under this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 114

>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

 Score = 62.2 bits (152), Expect = 1e-13
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 7   RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRS--TIGCTRDVA 64
           R   K    S    L +  +N+++ AQ++        +SAS+  K LR     G   +  
Sbjct: 18  RIRKKLLGTSGRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTE 77

Query: 65  AASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
           AA  +GKL+ ER L K I  V VF +   +YHG+V A+ D  REAG++
Sbjct: 78  AAYLVGKLIAERALAKGIEEV-VFDRGGYKYHGRVAALADGAREAGLE 124

Length = 125

>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRD------------VAAASK 68
           L +  TN  + A +V   T  V   + +  K L    G                + AA +
Sbjct: 108 LTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYE 167

Query: 69  IGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
           +GKL+G + L K I  V  F +   +Y GKV+A+ +  R  G++ 
Sbjct: 168 LGKLIGRKALSKGISKV-RFDRAHYKYAGKVEALAEGARAVGLQF 211

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
CHL00139	109	rpl18 ribosomal protein L18; Validated	100.0
PRK05593	117	rplR 50S ribosomal protein L18; Reviewed	100.0
TIGR00060	114	L18_bact ribosomal protein L18, bacterial type. Th	100.0
COG0256	125	RplR Ribosomal protein L18 [Translation, ribosomal	100.0
PTZ00032	211	60S ribosomal protein L18; Provisional	100.0
cd00432	103	Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is	100.0
PF00861	119	Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr	100.0
PRK08569	193	rpl18p 50S ribosomal protein L18P; Reviewed	100.0
KOG3333	188	consensus Mitochondrial/chloroplast ribosomal prot	99.82
PTZ00069	300	60S ribosomal protein L5; Provisional	99.7
PTZ00090	233	40S ribosomal protein S11; Provisional	98.22
PF00411	110	Ribosomal_S11: Ribosomal protein S11; InterPro: IP	98.11
CHL00041	116	rps11 ribosomal protein S11	98.0
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	97.99
KOG0875	264	consensus 60S ribosomal protein L5 [Translation, r	97.84
PRK05309	128	30S ribosomal protein S11; Validated	97.83
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	97.64
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	97.59
PTZ00129	149	40S ribosomal protein S14; Provisional	97.36
COG0100	129	RpsK Ribosomal protein S11 [Translation, ribosomal	96.93
KOG0408	190	consensus Mitochondrial/chloroplast ribosomal prot	96.04
KOG0407	139	consensus 40S ribosomal protein S14 [Translation,	94.88
PF14419	173	SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fus	84.61
TIGR01917	431	gly_red_sel_B glycine reductase, selenoprotein B.	80.15

>CHL00139 rpl18 ribosomal protein L18; Validated

Probab=100.00  E-value=4.3e-42  Score=238.93  Aligned_cols=104  Identities=26%  Similarity=0.387  Sum_probs=99.7

Q ss_pred             CCccCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 033650            9 PLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVF   88 (114)
Q Consensus         9 ~~~~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d   88 (114)
                      +.+..+..++|||+|++||+|||||||||.+|+||+||||.||++++|+++++|++||+.||++||+||+++||++|+||
T Consensus         6 r~ki~g~~~rpRL~V~rSnkhiyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~gi~~vvfD   85 (109)
T CHL00139          6 RKKIKGTAERPRLSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKGITKVVFD   85 (109)
T ss_pred             eeeecCCCCCCEEEEEEeCCeEEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence            44556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcchhhHHHHHHHHHHHcCccc
Q 033650           89 LKREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        89 ~r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                       ||+++|||||+||+|++||+||+|
T Consensus        86 -rgg~~yhGrV~a~a~~are~GL~f  109 (109)
T CHL00139         86 -RGGKLYHGRIKALAEAAREAGLQF  109 (109)
T ss_pred             -CCCCccchHHHHHHHHHHHhCCCC
Confidence             899999999999999999999997

>PRK05593 rplR 50S ribosomal protein L18; Reviewed

Probab=100.00  E-value=4.9e-40  Score=231.04  Aligned_cols=101  Identities=36%  Similarity=0.468  Sum_probs=95.5

Q ss_pred             ccCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033650           11 KTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLK   90 (114)
Q Consensus        11 ~~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r   90 (114)
                      +..+..++|||+|++||+|||||||||++++||+||||.||+++..+. ++|++||+.||++||+||+++||++|+|| |
T Consensus        17 ki~g~~~rpRL~V~~SnkhiyAQvidd~~~~tl~saST~e~~~k~~~~-~~n~~aa~~vG~~la~ra~~~gi~~vvfD-r   94 (117)
T PRK05593         17 KISGTAERPRLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVRAGLK-GGNKEAAKKVGKLIAERAKAKGIKQVVFD-R   94 (117)
T ss_pred             HhcCCCCCCEEEEEEeCCeEEEEEEECCCCEEEEEEecCcHhHhcccc-CCCHHHHHHHHHHHHHHHHHCCCCEEEEc-C
Confidence            346789999999999999999999999999999999999999976554 89999999999999999999999999999 7


Q ss_pred             CCcchhhHHHHHHHHHHHcCccc
Q 033650           91 REQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      |+++|||||+||+|++||+||+|
T Consensus        95 g~~~yhGrV~a~a~~are~Gl~f  117 (117)
T PRK05593         95 GGYKYHGRVKALADAAREAGLKF  117 (117)
T ss_pred             CCCcccHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999997

>TIGR00060 L18_bact ribosomal protein L18, bacterial type

Probab=100.00  E-value=8.2e-40  Score=228.98  Aligned_cols=97  Identities=35%  Similarity=0.471  Sum_probs=91.8

Q ss_pred             cCCCC--CCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650           12 TYQPS--EPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFL   89 (114)
Q Consensus        12 ~~~~~--~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~   89 (114)
                      ..++.  .+|||+|++||+|||||||||.+++||+||||+|++++    +++|+++|+.||++||+||+++||++|+|| 
T Consensus        16 i~gt~~~~rpRL~V~rSnk~iyaQiIdd~~~~tlasaST~ek~~~----~~~n~~aA~~vG~~la~ra~~~gi~~vvfD-   90 (114)
T TIGR00060        16 LRETGEANRPRLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLK----YTGNKDAAKKVGKLVAERLKEKGIKDVVFD-   90 (114)
T ss_pred             hcCCCCCCCcEEEEEEeCCeEEEEEEECCCCEEEEEEecchhhhc----CCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence            34566  79999999999999999999999999999999999876    678999999999999999999999999999 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCccc
Q 033650           90 KREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        90 r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      ||+++|||||+||+|++||+||+|
T Consensus        91 rgg~~YhGrv~A~a~~aRe~Gl~F  114 (114)
T TIGR00060        91 RGGYKYHGRVAALAEAAREAGLNF  114 (114)
T ss_pred             CCCCcchHHHHHHHHHHHHhCCCC
Confidence            899999999999999999999997

The archaeal and eukaryotic type rpL18 is not detectable under this model.

>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-38  Score=225.78  Aligned_cols=100  Identities=33%  Similarity=0.433  Sum_probs=95.1

Q ss_pred             CCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhh--ccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033650           13 YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRS--TIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLK   90 (114)
Q Consensus        13 ~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~--~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r   90 (114)
                      .+.+++|||+|++||+|||||||||..+.++++|||.++++++  |+..++|+++|++||+++|+||+++||++++|| |
T Consensus        24 ~g~~~rpRL~V~rSnkhi~aQiId~~~~~tla~aSt~~~~l~~~g~~~~~~N~~aA~~vG~lia~ra~~kgi~~vVfd-r  102 (125)
T COG0256          24 LGTSGRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERALAKGIEEVVFD-R  102 (125)
T ss_pred             ccCCCCcEEEEEEeCCcEEEEEEEcCCCceEEEEEcchHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEc-C
Confidence            4669999999999999999999999999999999999999965  667788999999999999999999999999988 8


Q ss_pred             CCcchhhHHHHHHHHHHHcCccc
Q 033650           91 REQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      ++++|||||+|++|++||+||+|
T Consensus       103 ~g~~yhgRV~Ala~~AreaGL~f  125 (125)
T COG0256         103 GGYKYHGRVAALADGAREAGLEF  125 (125)
T ss_pred             CCCCcchHHHHHHHHHHHcCcCC
Confidence            99999999999999999999997

>PTZ00032 60S ribosomal protein L18; Provisional

Probab=100.00  E-value=2.6e-38  Score=238.73  Aligned_cols=98  Identities=28%  Similarity=0.369  Sum_probs=93.3

Q ss_pred             CCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccC------------CCCCHHHHHHHHHHHHHHHhhCCC
Q 033650           15 PSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIG------------CTRDVAAASKIGKLLGERLLLKDI   82 (114)
Q Consensus        15 ~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~------------~~~n~~AA~~vG~~la~ra~e~gI   82 (114)
                      -.++|||+|++||+|||||||||.+++||+||||+++++++.+.            .++|+++|+.||++||+||+++||
T Consensus       102 gkrrPRLsV~RSnkHIYAQIIDD~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~kGI  181 (211)
T PTZ00032        102 GKRRPRLTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSKGI  181 (211)
T ss_pred             CCCcceEEEEecCCeEEEEEEECCCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHCCC
Confidence            36799999999999999999999999999999999999987665            578999999999999999999999


Q ss_pred             CEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650           83 PAVSVFLKREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        83 ~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      ++|+|| ||||+|||||+||||++||+||+|
T Consensus       182 ~kVvFD-RgGy~YHGRVkALAdaARe~GLkF  211 (211)
T PTZ00032        182 SKVRFD-RAHYKYAGKVEALAEGARAVGLQF  211 (211)
T ss_pred             CEEEEe-CCCCeehhHHHHHHHHHHHcCCCC
Confidence            999999 899999999999999999999987

>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

Probab=100.00  E-value=3.4e-37  Score=211.04  Aligned_cols=102  Identities=33%  Similarity=0.437  Sum_probs=97.5

Q ss_pred             CCccCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 033650            9 PLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVF   88 (114)
Q Consensus         9 ~~~~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d   88 (114)
                      +++..+...+|||+|++||+||||||+||.+++||++|||.|+++++++++++|.+||+.||++||+||+++||++++||
T Consensus         2 ~~~~~~~~~~~RL~v~~Sn~~i~aqvi~~~~~~vl~sast~e~~~~~~~~~~~n~~aA~~vG~~la~r~~~~gi~~vv~D   81 (103)
T cd00432           2 RRKRLGTQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEKGIKKVVFD   81 (103)
T ss_pred             ceEecCcCCCCEEEEEEeCCEEEEEEEEeCcCeEEEEEecCchhhcccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcchhhHHHHHHHHHHHcCc
Q 033650           89 LKREQRYHGKVKAIIDSLREAGV  111 (114)
Q Consensus        89 ~r~~~~yhGrv~a~~~~lre~Gl  111 (114)
                       |++++|||||+||+|++||+||
T Consensus        82 -~~~~~~~grv~a~~~~~r~~Gl  103 (103)
T cd00432          82 -RGGYRYHGRVKALAKGAREGGL  103 (103)
T ss_pred             -CCCcccccHHHHHHHHHHHcCC
Confidence             7999999999999999999997

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.

>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.5e-36  Score=212.26  Aligned_cols=101  Identities=34%  Similarity=0.457  Sum_probs=94.9

Q ss_pred             cCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhc--cCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650           12 TYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRST--IGCTRDVAAASKIGKLLGERLLLKDIPAVSVFL   89 (114)
Q Consensus        12 ~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~--l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~   89 (114)
                      .+..+++|||+|++||+|||||||||.++.++++|||.|+++++.  ..+++|++||+.||++||+||+++||..++|| 
T Consensus        17 ~~~~~~~~RL~V~~Snk~i~aQii~~~~~~~l~~aSt~~~~l~~~~~~~~~~n~~aa~~vG~lla~ra~~~gi~~v~fd-   95 (119)
T PF00861_consen   17 IKGTAERPRLVVFRSNKHIYAQIIDDSKGGTLASASTLSKELKKYGWKGSTKNVEAAYLVGELLAKRALEKGIAKVVFD-   95 (119)
T ss_dssp             HHHTTSSEEEEEEEESSEEEEEEEECTTTEEEEEEEEETTTGGGTT-SSTTSSHHHHHHHHHHHHHHHHHTTSSEEEEC-
T ss_pred             HhcCCCCCEEEEEeccCeEEEEEEeeCCCCeEEEEEecchhhhhhhhccCCCCEehHHHHHHHHHHHHHHcCCcEEEEc-
Confidence            356788999999999999999999999999999999999999964  57788999999999999999999999999988 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCccc
Q 033650           90 KREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        90 r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      |++++|||||+||+|++||+||+|
T Consensus        96 r~~~~y~grv~a~~~~~re~Gl~f  119 (119)
T PF00861_consen   96 RGGYKYHGRVKALADGAREGGLEF  119 (119)
T ss_dssp             TSTSSSSSHHHHHHHHHHHTTCB-
T ss_pred             CCCCcccHHHHHHHHHHHHcCCCC
Confidence            799999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....

>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed

Probab=100.00  E-value=3e-35  Score=221.36  Aligned_cols=100  Identities=27%  Similarity=0.202  Sum_probs=95.8

Q ss_pred             CCCCCCcEEEEEEeCCceeeEEE--ECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033650           13 YQPSEPYVLKMHLTNKYVSAQVV--HSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLK   90 (114)
Q Consensus        13 ~~~~~~~rL~V~~Snkhi~Aqvi--~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r   90 (114)
                      +..+++|||+|++||+|||||||  ||++|+||+||||.|+..++|+.+++|++||+.||+++|+||+++||++|+|| |
T Consensus        27 l~~~~kpRLvV~rSNkhIyaQiI~~dd~gd~tLaSAsS~el~~~g~~~~~~N~~AAy~vG~llA~ral~kGi~~vvfD-r  105 (193)
T PRK08569         27 LLLSGKPRLVVRKTNKHVIAQIVKYDPKGDRTLASAHSRELAKYGWKGDTGNTPAAYLTGLLAGKKALKAGVEEAVLD-I  105 (193)
T ss_pred             HHhcCCCEEEEEEeCCeEEEEEEEccCCCCEEEEEEecCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-c
Confidence            34578999999999999999999  89999999999999999999998999999999999999999999999999999 7


Q ss_pred             CCcchh--hHHHHHHHHHHHcCccc
Q 033650           91 REQRYH--GKVKAIIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yh--Grv~a~~~~lre~Gl~~  113 (114)
                      |+++||  |||+|++|++||+||+|
T Consensus       106 Gg~~yh~gGRV~A~akgArd~GL~f  130 (193)
T PRK08569        106 GLHRPTKGSRVFAALKGAIDAGLEI  130 (193)
T ss_pred             CCccccCCccHHHHHHHHHHcCCcC
Confidence            999999  99999999999999987

>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=6.1e-20  Score=134.73  Aligned_cols=97  Identities=27%  Similarity=0.285  Sum_probs=84.9

Q ss_pred             CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRY   95 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~y   95 (114)
                      +=-|+|.|.++..|+.+-|.|.++|. ++||||.||+|+++|+++.|++||.++|++||+||+++||+++++.+.--...
T Consensus        58 sywh~lev~~~~~hveg~v~H~~~gv-vvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~fm~~~~t~ea~~  136 (188)
T KOG3333|consen   58 SYWHRLEVIRTQHHVEGLVEHQNGGV-VVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINFMVYQPTPEAAA  136 (188)
T ss_pred             hheeEEEEeecccceeeeeeEecCCE-EEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcceeccCCChhhcc
Confidence            33589999999999999999977665 57999999999999999999999999999999999999999998764222234


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033650           96 HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        96 hGrv~a~~~~lre~Gl~~  113 (114)
                      ....+-|..++.|+|+.|
T Consensus       137 ~s~~q~l~~a~~e~Gv~l  154 (188)
T KOG3333|consen  137 SSSMQRLQSAMTEGGVVL  154 (188)
T ss_pred             chHHHHHHHHHHhCCeee
Confidence            567888999999999976

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=99.70  E-value=5.2e-17  Score=128.73  Aligned_cols=96  Identities=24%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             CCcEEEEEEeCCceeeEEEE--CCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC--------CCC---
Q 033650           17 EPYVLKMHLTNKYVSAQVVH--SPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK--------DIP---   83 (114)
Q Consensus        17 ~~~rL~V~~Snkhi~Aqvi~--~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~--------gI~---   83 (114)
                      .+|||+|++||++|.|||+.  .++++||+||+|.|+.-.+|..+.+|.+|||.+|.++|.|++++        |++   
T Consensus        47 pK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~  126 (300)
T PTZ00069         47 PKYRLVVRITNKDIICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEAD  126 (300)
T ss_pred             CCceEEEEEECCcEEEEEEEeecCCCEEEEEeehhhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCccccc
Confidence            36999999999999999998  67999999999999998899999999999999999999999998        773   


Q ss_pred             -----------------EEEEecCCCc--chhhHHHHHHHHHHHcCccc
Q 033650           84 -----------------AVSVFLKREQ--RYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        84 -----------------~v~~d~r~~~--~yhGrv~a~~~~lre~Gl~~  113 (114)
                                       ++++|. |..  ..++||+|+++|+.|+||++
T Consensus       127 g~~y~v~e~~~~~~rpf~a~LDi-GL~rtt~G~RVFaalKGa~DgGl~I  174 (300)
T PTZ00069        127 GEYYHVDEEDDEERRPFKAILDV-GLARTTTGNRVFGALKGAVDGGLHI  174 (300)
T ss_pred             CcccccccccccCCCCceEEEee-ccccCCCCceeeeehhcccccCccc
Confidence                             677886 754  46789999999999999985

>PTZ00090 40S ribosomal protein S11; Provisional

Probab=98.22  E-value=3.4e-05  Score=59.66  Aligned_cols=93  Identities=18%  Similarity=0.322  Sum_probs=75.2

Q ss_pred             CCCCcEEEEEEeCCceeeEEEECCCCe-EEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033650           15 PSEPYVLKMHLTNKYVSAQVVHSPTAT-VASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQ   93 (114)
Q Consensus        15 ~~~~~rL~V~~Snkhi~Aqvi~~~~~~-~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~   93 (114)
                      .-.++.++|.-|-+.+.++|.|..+.. ||+-+|+-..-+++..  .+.--||+.+++.+|++|++.||..|.+..+|. 
T Consensus       115 p~~~f~~vI~aSfNNTIVTlTD~~GNv~tl~WSSAG~~GFKGsK--KsTpfAAQ~aae~aakka~~~GIk~V~V~vKGp-  191 (233)
T PTZ00090        115 PTDRFMLVITTSKNNVHAQVVNKSKNYKTVFGSFAGNVGFRKKL--QQSERCAYRIGENIAKKCRRLGIFAVDIKFRRI-  191 (233)
T ss_pred             CCCcEEEEEEeccCcEEEEEEeCCCCEEEEEEEcccccCcccCc--cCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCC-
Confidence            356789999999999999999966664 5777776665666532  345668899999999999999999998877665 


Q ss_pred             chhhHHHHHHHHHHHcCccc
Q 033650           94 RYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        94 ~yhGrv~a~~~~lre~Gl~~  113 (114)
                        .| ..+++.++..+||++
T Consensus       192 --Gg-REtALRaL~~~GLkI  208 (233)
T PTZ00090        192 --MR-VETVLQAFYANGLQV  208 (233)
T ss_pred             --Ch-HHHHHHHHHHCCCEE
Confidence              34 899999999999986

>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.11  E-value=4.3e-05  Score=52.97  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             EEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHH
Q 033650           21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVK  100 (114)
Q Consensus        21 L~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~  100 (114)
                      +.|+-|.+.+...+.| ..|.++.+.|+-...+++.  ......||+.+++.++++|++.||+.+.+..+|.  --||- 
T Consensus         3 ihI~~s~NNt~vtlTd-~~G~~~~~~S~G~~gfK~~--rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~--g~gr~-   76 (110)
T PF00411_consen    3 IHIKSSFNNTIVTLTD-LKGNVLFWSSAGSLGFKGA--RKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGF--GPGRE-   76 (110)
T ss_dssp             EEEEEESSEEEEEEEE-TTSEEEEEEETTTSSTTTT--CGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESS--STTHH-
T ss_pred             EEEEecCCCEEEEEEC-CCCCEEEEEeccccccccc--cccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCC--CccHH-
Confidence            6788899999999998 5577888888877777763  3567899999999999999999999988877652  13444 


Q ss_pred             HHHHHHHHcCccc
Q 033650          101 AIIDSLREAGVKL  113 (114)
Q Consensus       101 a~~~~lre~Gl~~  113 (114)
                      +++.++...|+++
T Consensus        77 ~~lk~l~~~gl~I   89 (110)
T PF00411_consen   77 AALKALKKSGLKI   89 (110)
T ss_dssp             HHHHHHHHTTSEE
T ss_pred             HHHHHHHhcCCEE
Confidence            5668888899876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....

>CHL00041 rps11 ribosomal protein S11

Probab=98.00  E-value=0.00012  Score=51.37  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             EEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033650           20 VLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKV   99 (114)
Q Consensus        20 rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv   99 (114)
                      .+.|+.|.+.+...+.|. .|.++.++|.-...+++.  .....-||..+++.++++|++.|+..+.+..||.-  .|| 
T Consensus        15 i~hI~~t~NNTiiTlTd~-~G~~l~~~S~G~~gfKg~--rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G--~Gr-   88 (116)
T CHL00041         15 VIHIQASFNNTIVTVTDV-RGRVISWSSAGACGFKGA--RKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPG--LGR-   88 (116)
T ss_pred             EEEEEcccCCEEEEEEcC-CCCEEEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCC--CcH-
Confidence            578889999999999985 567888888876667653  24567899999999999999999999988876532  355 


Q ss_pred             HHHHHHHHHcCccc
Q 033650          100 KAIIDSLREAGVKL  113 (114)
Q Consensus       100 ~a~~~~lre~Gl~~  113 (114)
                      ++++.++...||++
T Consensus        89 ~~~ir~l~~~glkI  102 (116)
T CHL00041         89 DTALRAIRRSGLKL  102 (116)
T ss_pred             HHHHHHHHHCCCEE
Confidence            66779999999986

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=97.99  E-value=0.00013  Score=50.49  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             EEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHH
Q 033650           21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVK  100 (114)
Q Consensus        21 L~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~  100 (114)
                      +.|+.|.+.+...+.|. .|.++..+|+-...+++.  .....-||..+++.++++|++.||..+.+..||.- + || +
T Consensus         3 ~hI~~s~NNT~itlTd~-~g~~~~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G-~-gr-~   76 (108)
T TIGR03632         3 AHIHATFNNTIVTITDP-QGNVLSWASAGAVGFKGS--KKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPG-A-GR-E   76 (108)
T ss_pred             EEEEccCCCEEEEEEcC-CCCEEEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCC-C-cH-H
Confidence            57888999999999986 456788888766666653  34567889999999999999999999988876532 2 44 6


Q ss_pred             HHHHHHHHcCccc
Q 033650          101 AIIDSLREAGVKL  113 (114)
Q Consensus       101 a~~~~lre~Gl~~  113 (114)
                      +++.++...||++
T Consensus        77 ~~ir~l~~~glkI   89 (108)
T TIGR03632        77 SAIRALQAAGLEV   89 (108)
T ss_pred             HHHHHHHHCCCEE
Confidence            7888889899986

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=1.1e-05  Score=63.36  Aligned_cols=97  Identities=20%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             CCCcEEEEEEeCCceeeEEEE--CCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhh-CCCCEE-------
Q 033650           16 SEPYVLKMHLTNKYVSAQVVH--SPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLL-KDIPAV-------   85 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~--~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e-~gI~~v-------   85 (114)
                      ...|||.|+.+|+.+.+|++.  -+++.++++|.+.|+.-.+.+..-.|-.||+.+|.+||.|+++ .|.++.       
T Consensus        46 t~kyR~ivr~~n~~iicqi~~~~i~gd~v~~~a~s~elpkyg~~~GLtNyaAay~TglLLarR~l~~~gmD~~yeg~~e~  125 (264)
T KOG0875|consen   46 TPKYRMIVRVINKDIICQIAYATIEGDVIVRAAYAHELPKYGVKVGLTNYAAAYCTGLLLACRLLKRFGMDKIYEGQVEV  125 (264)
T ss_pred             CCceEEEEEEechhhHHHHHhheecceEEEEeeccccccccccccccchhHHHHhhHHHHHHHHHHHhCcccccccceee
Confidence            457999999999999999997  4577788899999998777666678999999999999999986 564432       


Q ss_pred             -------------------EEecCCCcc--hhhHHHHHHHHHHHcCccc
Q 033650           86 -------------------SVFLKREQR--YHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        86 -------------------~~d~r~~~~--yhGrv~a~~~~lre~Gl~~  113 (114)
                                         .+|. |..+  -..||+..++++.++||.+
T Consensus       126 ~gde~~~e~idgq~~aFt~~Ld~-GLaRtttg~kvFGAlkga~dGGL~I  173 (264)
T KOG0875|consen  126 TGDEYNVESIDGQPGAFTCYLDA-GLARTTTGNKVFGALKGAVDGGLSI  173 (264)
T ss_pred             cCcccccccccCCCCCeEEEecc-cccccCCCceeeeeeehhcccceec
Confidence                               1121 1111  2348999999999999875

>PRK05309 30S ribosomal protein S11; Validated

Probab=97.83  E-value=0.00035  Score=49.81  Aligned_cols=90  Identities=20%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             CcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhh
Q 033650           18 PYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHG   97 (114)
Q Consensus        18 ~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhG   97 (114)
                      .-.+.|+-|.+.+...+.|. .|.+++.+|.-...+++.  ..+..-||..+++.+++.|++.||..+.+..+|. - .|
T Consensus        17 ~gi~hI~~t~NNTiitlTd~-~G~~~~~~S~G~~gfKg~--rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~-G-~G   91 (128)
T PRK05309         17 SGVAHIHATFNNTIVTITDR-QGNVISWASAGGLGFKGS--RKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGP-G-SG   91 (128)
T ss_pred             eeEEEEEccCCCEEEEEEcC-CCCEEEEEecCccEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-Cc
Confidence            34688999999999999984 567788888766666653  3456789999999999999999999998887653 2 24


Q ss_pred             HHHHHHHHHHHcCccc
Q 033650           98 KVKAIIDSLREAGVKL  113 (114)
Q Consensus        98 rv~a~~~~lre~Gl~~  113 (114)
                      | .+++.+|...||++
T Consensus        92 r-~~air~L~~~glkI  106 (128)
T PRK05309         92 R-ESAIRALQAAGLEV  106 (128)
T ss_pred             H-HHHHHHHHHCCCEE
Confidence            4 67778888899976

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=97.64  E-value=0.0011  Score=47.65  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=68.7

Q ss_pred             cEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccc--
Q 033650           19 YVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR--EQR--   94 (114)
Q Consensus        19 ~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~--~~~--   94 (114)
                      -.+.|+-|-+.....|.|..+..+++.+|.-..-+++.  ..+.--||...++.++++|++.||+.|.+..+|  +..  
T Consensus        10 gi~hI~as~NNTivtvTD~~G~~~~~~~S~G~~g~kg~--kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~   87 (132)
T PRK09607         10 GIAHIYASFNNTIITITDLTGAETIAKSSGGMVVKADR--DESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQK   87 (132)
T ss_pred             eEEEEEcccCCeEEEEEcCCCCEEEEEecCcceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCc
Confidence            36788999999999999866556887777765544432  234456899999999999999999999888876  111  


Q ss_pred             -hhhHHHHHHHHHHHcCccc
Q 033650           95 -YHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        95 -yhGrv~a~~~~lre~Gl~~  113 (114)
                       ++--=.+.+.+|...||++
T Consensus        88 ~~G~Gr~~airal~~~glkI  107 (132)
T PRK09607         88 SPGPGAQAAIRALARAGLRI  107 (132)
T ss_pred             CCCCcHHHHHHHHHHCCCEE
Confidence             2212356678888899986

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=97.59  E-value=0.0013  Score=46.26  Aligned_cols=91  Identities=12%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             EEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccc---h
Q 033650           21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR--EQR---Y   95 (114)
Q Consensus        21 L~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~--~~~---y   95 (114)
                      +.|+-|-+.....|.|..+..+++-+|.-..-+++.  ..+.--||....+.++++|++.||..+.+..||  +.+   +
T Consensus         5 ~hI~as~NNTiitvTD~~G~~~~~~~S~G~~g~kg~--kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~   82 (114)
T TIGR03628         5 AHIYSSFNNTIITITDITGAETIARSSGGMVVKADR--DESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSP   82 (114)
T ss_pred             EEEEccCCCeEEEEEcCCCCEEEEEecCcceEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCC
Confidence            567888888999999866667887777765555542  234556899999999999999999999888876  222   2


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033650           96 HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        96 hGrv~a~~~~lre~Gl~~  113 (114)
                      .--=.+.+.+|+..||++
T Consensus        83 G~Gr~~air~l~~~glkI  100 (114)
T TIGR03628        83 GPGAQAAIRALARAGLRI  100 (114)
T ss_pred             CCcHHHHHHHHHHCCCEE
Confidence            212356678889999986

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>PTZ00129 40S ribosomal protein S14; Provisional

Probab=97.36  E-value=0.0025  Score=46.71  Aligned_cols=93  Identities=15%  Similarity=0.066  Sum_probs=67.1

Q ss_pred             cEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccc--
Q 033650           19 YVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR--EQR--   94 (114)
Q Consensus        19 ~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~--~~~--   94 (114)
                      -.+.|+-|-+.....|.|.. |.+++.+|+-...+++.. ..+.--||....+.++++|++.||..+.+..|+  |..  
T Consensus        29 Gi~hI~as~NNTiItiTD~~-G~~~~w~SsG~~gfKg~r-~KsTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~k  106 (149)
T PTZ00129         29 GVAHIFASFNDTFIHVTDLS-GRETLVRVTGGMKVKADR-DESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTK  106 (149)
T ss_pred             EEEEEEcccCCeEEEEEccc-CCEEEEEecCcceecccc-cCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCC
Confidence            36788889899999999855 555666676555566431 133456889999999999999999999888754  222  


Q ss_pred             -hhhHHHHHHHHHHHcCccc
Q 033650           95 -YHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        95 -yhGrv~a~~~~lre~Gl~~  113 (114)
                       +.--=.+.+.+|...||++
T Consensus       107 g~GpGr~~airaL~~~glkI  126 (149)
T PTZ00129        107 TPGPGAQAALRALARAGLKI  126 (149)
T ss_pred             CCCCCHHHHHHHHHHCCCEE
Confidence             2212456778999999986

>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.02  Score=41.08  Aligned_cols=87  Identities=22%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             EEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHH
Q 033650           21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVK  100 (114)
Q Consensus        21 L~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~  100 (114)
                      .-|+.|-+.....+-| .+|.++..+|+=..-+++.-  .+.--||...++.+++.++|.||..+.+..+|.-  -| -+
T Consensus        21 ahI~asfNNTivtitD-~~Gn~i~wassG~~gfk~~r--k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG--~G-re   94 (129)
T COG0100          21 AHIHASFNNTIVTITD-LTGNVIIWASSGGMGFKGSR--KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPG--PG-RE   94 (129)
T ss_pred             EEEEcccCCcEEEecC-CCCCEEEEEecCCceEcCCC--CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCC--Cc-HH
Confidence            4455566666666665 67778889998777777642  4566778889999999999999999877766620  23 35


Q ss_pred             HHHHHHHHcCccc
Q 033650          101 AIIDSLREAGVKL  113 (114)
Q Consensus       101 a~~~~lre~Gl~~  113 (114)
                      ++..+|..+|+++
T Consensus        95 aAiraL~~ag~~i  107 (129)
T COG0100          95 AAIRALAAAGLKI  107 (129)
T ss_pred             HHHHHHHHccceE
Confidence            6677777888875

>KOG0408 consensus Mitochondrial/chloroplast ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=0.075  Score=39.90  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=71.2

Q ss_pred             CCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033650           14 QPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQ   93 (114)
Q Consensus        14 ~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~   93 (114)
                      .+.+-|...|.-|-++...+|.| ..|.++..+|-----+++.  ..+..-||...|-..+.|+.+.|+..+-+-.+|. 
T Consensus        75 ~f~eiPi~hIraS~NNTivtVtd-~kg~vi~~~ScgteGFrnt--rkgT~iAaQtaavaa~~r~v~~G~~~vrV~VkGl-  150 (190)
T KOG0408|consen   75 NFREIPIIHIRASFNNTIVTVTD-VKGEVISWSSCGTEGFRNT--RKGTPIAAQTAAVAAIRRAVDQGMQTVRVRVKGL-  150 (190)
T ss_pred             cccccceEEEEecCCCeEEEEEc-cCCcEEEEeeccccccccc--ccCCchhHHHHHHHHHHHHHHhcceEEEEEEecC-
Confidence            34667788999999999999997 6677776655544446552  2345568888999999999999999987776553 


Q ss_pred             chhhHHHHHHHHHHHcCcccC
Q 033650           94 RYHGKVKAIIDSLREAGVKLL  114 (114)
Q Consensus        94 ~yhGrv~a~~~~lre~Gl~~~  114 (114)
                       =-||..| +.+|+-+||.++
T Consensus       151 -GpGRmsa-~kgl~m~Gl~vv  169 (190)
T KOG0408|consen  151 -GPGRMSA-LKGLRMGGLLVV  169 (190)
T ss_pred             -CccHHHH-HhhhhhcceEEE
Confidence             1477765 589999998763

>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=94.88  E-value=0.39  Score=34.08  Aligned_cols=92  Identities=11%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             EEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccc---
Q 033650           20 VLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR--EQR---   94 (114)
Q Consensus        20 rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~--~~~---   94 (114)
                      ...++-|-+..+..|.|-.+..||+-.+---+ +|.+ ...++--||-+-..-.|.+|++.||+.+.+-.|.  |.+   
T Consensus        18 vahi~asfndtfvhitdlsg~eti~rvtggmk-vkad-rdesspyaamlaaqdva~kck~~gi~alh~klratgg~ktkt   95 (139)
T KOG0407|consen   18 VAHIFASFNDTFVHVTDLSGKETIVRVTGGMK-VKAD-RDESSPYAAMLAAQDVAAKCKELGITALHIKLRATGGTKTKT   95 (139)
T ss_pred             EEEEEeecccceEEEeccCCceEEEEecCCeE-Eecc-cccCChHHHHHHHHHHHHHHHhcCeeEEEEEEEecCCcccCC
Confidence            34677788888888888888889887665322 2221 2335666788888999999999999999887653  322   


Q ss_pred             hhhHHHHHHHHHHHcCccc
Q 033650           95 YHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        95 yhGrv~a~~~~lre~Gl~~  113 (114)
                      .+---++.+.+|-.+|+.+
T Consensus        96 pgpgaqsalralar~gmri  114 (139)
T KOG0407|consen   96 PGPGAQSALRALARSGMRI  114 (139)
T ss_pred             CCccHHHHHHHHHHhccee
Confidence            2223566677777777764

>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP

Probab=84.61  E-value=4.2  Score=30.49  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=41.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc
Q 033650           56 TIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA  109 (114)
Q Consensus        56 ~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~  109 (114)
                      |++--++.+||++.|+-++..+....+.+.++-+. +.--.=-+..|++|++++
T Consensus         6 Q~pYlGd~~a~r~mGerIGRaaQ~FEV~eLiiap~-~~vda~eL~~Fl~gV~~G   58 (173)
T PF14419_consen    6 QMPYLGDLKACRKMGERIGRAAQAFEVKELIIAPK-EKVDAYELMEFLRGVREG   58 (173)
T ss_pred             eccccCCHHHHHHHHHHHhHHHhhcchheEEEecc-CccCHHHHHHHHHHHHHh
Confidence            44556899999999999999999999999988762 222222377888888874

>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B

Probab=80.15  E-value=6.6  Score=33.43  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650           59 CTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        59 ~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      .+.+...+...|..+|+++++.|++.|++-. .=-.-|=-....++.+.++||..
T Consensus       314 ~gt~~~~a~~~g~eIa~~Lk~dgVDAvILts-tCgtCtrcga~m~keiE~~GIPv  367 (431)
T TIGR01917       314 NGTAVANSKQFAKEFSKELLAAGVDAVILTS-TUGTCTRCGATMVKEIERAGIPV  367 (431)
T ss_pred             CCccHHHHHHHHHHHHHHHHHcCCCEEEEcC-CCCcchhHHHHHHHHHHHcCCCE
Confidence            4567788999999999999999999998873 32233445677888888899864

Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
1ovy_A	120	Solution Structure Of Ribosomal Protein L18 From Ba		3e-06

>pdb|1OVY|A Chain A, Solution Structure Of Ribosomal Protein L18 From Bacillus Stearothermophilus Length = 120

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 11  KTYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIG 70
           K +  +E   L +  +NK++ AQ                +K     +  T ++ AA K+G
Sbjct: 21  KIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--GLDSTNNIEAAKKVG 78
Query: 71  KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
           +L+ +R L K I  V VF +    YHG+VKA+ D+ REAG++ 
Sbjct: 79  ELVAKRALEKGIKQV-VFDRGGYLYHGRVKALADAAREAGLEF 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	2e-18
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	6e-16
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	3e-15
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	7e-15
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	6e-14
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	1e-13

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O ... Length = 116

 Score = 73.0 bits (180), Expect = 2e-18
 Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T +++ AQV+    + V  +AS+ EKA+   +  T +  AA+ +GK + ER L K
Sbjct: 25  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 84

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
            I  V  F +   +YHG+V+A+ D+ REAG++
Sbjct: 85  GIKDV-SFDRSGFQYHGRVQALADAAREAGLQ 115

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Length = 120

 Score = 66.8 bits (164), Expect = 6e-16
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +  +NK++ AQ++    +    SAS+ +K           + AA K+G+L+ +R L K
Sbjct: 31  LSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNN--IEAAKKVGELVAKRALEK 88

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
            I  V VF +    YHG+VKA+ D+ REAG++
Sbjct: 89  GIKQV-VFDRGGYLYHGRVKALADAAREAGLE 119

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Length = 112

 Score = 64.9 bits (159), Expect = 3e-15
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 26  TNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
           + K++ AQ++         SASS    L+           A ++G+ L E+ L   I  V
Sbjct: 31  SLKHIYAQIIDDEKGVTLVSASSLALKLKGN-----KTEVARQVGRALAEKALALGIKQV 85

Query: 86  SVFLKREQRYHGKVKAIIDSLREAGVK 112
             F +   +YHG+VKA+ +  RE G++
Sbjct: 86  -AFDRGPYKYHGRVKALAEGAREGGLE 111

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 161

 Score = 65.5 bits (160), Expect = 7e-15
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTR--DVAAASKIGKLLGERLL 78
           L +  +NK++  QV+        +SAS+ +K++   +  +    +  A K+G+++    L
Sbjct: 68  LCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACL 127

Query: 79  LKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
            K I  V  F +    YHG+VKA+ D+ RE G++
Sbjct: 128 EKGITKV-AFDRGGYPYHGRVKALADAAREKGLQ 160

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Length = 114

 Score = 61.8 bits (151), Expect = 6e-14
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L ++ ++K++ AQ++        ++ASS      +          A+ +GK L      K
Sbjct: 29  LSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSGNKT------DTAAAVGKALAAAAAEK 82

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
            I  V VF +   +YHG+VKA+ D+ RE G+ 
Sbjct: 83  GIKQV-VFDRGSYKYHGRVKALADAAREGGLD 113

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187

 Score = 62.6 bits (152), Expect = 1e-13
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 24  HLTNKYVSAQVVHS--PTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKD 81
             +NK+V AQ+V          +SA S + A       T ++ +A   G L G R     
Sbjct: 38  RKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAG 97

Query: 82  IPAVSVFLK-REQRYHGKVKAIIDSLREAGVK 112
           +    + +         KV AI +   +AG+ 
Sbjct: 98  VEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLD 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	100.0
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	100.0
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	100.0
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	100.0
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	100.0
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	100.0
3j21_O	203	50S ribosomal protein L18P; archaea, archaeal, KIN	100.0
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	99.96
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	99.94
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	99.94
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	99.89
2vqe_K	129	30S ribosomal protein S11, 30S ribosomal protein S	98.11
2xzm_K	151	RPS14E; ribosome, translation; 3.93A {Tetrahymena	97.95
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	97.85
3j20_M	137	30S ribosomal protein S11P; archaea, archaeal, KIN	97.83
3bbn_K	140	Ribosomal protein S11; small ribosomal subunit, sp	97.77
3u5c_O	137	RP59A, 40S ribosomal protein S14-A; translation, r	97.38
4fnq_A	729	Alpha-galactosidase AGAB; glycoside hydrolase, hyd	80.68
3b09_A	88	Peptidyl-prolyl CIS-trans isomerase; Val-Leu zippe	80.17

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...

Probab=100.00  E-value=2.4e-42  Score=241.48  Aligned_cols=97  Identities=35%  Similarity=0.454  Sum_probs=95.2

Q ss_pred             CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRY   95 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~y   95 (114)
                      +++|||+|++||+|||||||||++|+||+||||+|+++++++.+++|++||+.||++||+||+++||++|+|| ||+++|
T Consensus        20 ~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y   98 (116)
T 3r8s_O           20 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY   98 (116)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEE-CTTSCS
T ss_pred             CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCcc
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999 799999


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033650           96 HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        96 hGrv~a~~~~lre~Gl~~  113 (114)
                      ||||+||+|++||+||+|
T Consensus        99 hGrV~Ala~~are~Gl~f  116 (116)
T 3r8s_O           99 HGRVQALADAAREAGLQF  116 (116)
T ss_dssp             SSHHHHHHHHHHHTTCCC
T ss_pred             cHHHHHHHHHHHHhCCCC
Confidence            999999999999999998

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=5.1e-42  Score=250.88  Aligned_cols=101  Identities=27%  Similarity=0.392  Sum_probs=96.0

Q ss_pred             cCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccC--CCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650           12 TYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIG--CTRDVAAASKIGKLLGERLLLKDIPAVSVFL   89 (114)
Q Consensus        12 ~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~--~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~   89 (114)
                      ..++.++|||+|++||+|||||||||.+|+||+||||+||++++.++  +++|++||+.||++||+||+++||++|+|| 
T Consensus        59 i~gt~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFD-  137 (161)
T 3bbo_Q           59 VEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFD-  137 (161)
T ss_dssp             GGGSSSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCC-
T ss_pred             hccCCCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence            35668899999999999999999999999999999999999997666  789999999999999999999999999988 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCccc
Q 033650           90 KREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        90 r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      ||+|+|||||+||+|++||+||+|
T Consensus       138 Rgg~~YhGRVkAladaaRe~GL~F  161 (161)
T 3bbo_Q          138 RGGYPYHGRVKALADAAREKGLQF  161 (161)
T ss_dssp             CSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred             CCCCcchHHHHHHHHHHHHhCCcC
Confidence            899999999999999999999997

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1

Probab=100.00  E-value=6.6e-41  Score=235.35  Aligned_cols=99  Identities=32%  Similarity=0.487  Sum_probs=93.3

Q ss_pred             cCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC
Q 033650           12 TYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR   91 (114)
Q Consensus        12 ~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~   91 (114)
                      ..++.++|||+|++||+|||||||||++|+||+||||+||+++  +++++|++||+.||++||+||+++||++|+|| ||
T Consensus        22 i~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rg   98 (120)
T 1ovy_A           22 IFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RG   98 (120)
T ss_dssp             --CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-ST
T ss_pred             hcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-cC
Confidence            3566889999999999999999999999999999999999987  67889999999999999999999999999988 89


Q ss_pred             CcchhhHHHHHHHHHHHcCccc
Q 033650           92 EQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        92 ~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      +++|||||+||+|++||+||+|
T Consensus        99 g~~yhgrV~ala~~are~GL~f  120 (120)
T 1ovy_A           99 GYLYHGRVKALADAAREAGLEF  120 (120)
T ss_dssp             TCSSCSSTHHHHHHHHHHHCCC
T ss_pred             CccccHHHHHHHHHHHHhCCcC
Confidence            9999999999999999999997

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...

Probab=100.00  E-value=1e-40  Score=231.93  Aligned_cols=94  Identities=27%  Similarity=0.391  Sum_probs=89.4

Q ss_pred             CCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033650           13 YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE   92 (114)
Q Consensus        13 ~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~   92 (114)
                      .++. +|||+|++||+|||||||||++|+||+||||+||+++     ++|++||+.||++||+||+++||++|+|| ||+
T Consensus        19 ~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~ra~~~GI~~vvfD-rgg   91 (112)
T 3v2d_S           19 KRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFD-RGP   91 (112)
T ss_dssp             HHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHHHHTTTCCBCEEE-CTT
T ss_pred             cCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCC
Confidence            3455 9999999999999999999999999999999999874     68999999999999999999999999999 899


Q ss_pred             cchhhHHHHHHHHHHHcCccc
Q 033650           93 QRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        93 ~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      |+|||||+||+|++||+||+|
T Consensus        92 ~~yhGrV~Ala~~are~GL~f  112 (112)
T 3v2d_S           92 YKYHGRVKALAEGAREGGLEF  112 (112)
T ss_dssp             SCSCSSTTHHHHHHHHTTCBC
T ss_pred             CcccHHHHHHHHHHHHcCCCC
Confidence            999999999999999999998

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P

Probab=100.00  E-value=2.9e-39  Score=225.20  Aligned_cols=94  Identities=28%  Similarity=0.375  Sum_probs=86.8

Q ss_pred             CCC---CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650           13 YQP---SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFL   89 (114)
Q Consensus        13 ~~~---~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~   89 (114)
                      .++   +++|||+|++||+|||||||||++|+||+||||.|  +    ++++|++||+.||++||+||+++||++|+|| 
T Consensus        18 ~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-   90 (114)
T 2zjr_L           18 RTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALAAAAAEKGIKQVVFD-   90 (114)
T ss_dssp             HSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-
T ss_pred             ccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence            566   89999999999999999999999999999999999  3    4678999999999999999999999999988 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCccc
Q 033650           90 KREQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        90 r~~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      ||+++|||||+||+|++||+||+|
T Consensus        91 rgg~~yhgrV~Ala~~are~GL~f  114 (114)
T 2zjr_L           91 RGSYKYHGRVKALADAAREGGLDF  114 (114)
T ss_dssp             CCSSCSCSHHHHHHHHHHHHC---
T ss_pred             cCCccccHHHHHHHHHHHHhCCcC
Confidence            899999999999999999999997

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...

Probab=100.00  E-value=2.8e-35  Score=219.80  Aligned_cols=98  Identities=24%  Similarity=0.145  Sum_probs=92.0

Q ss_pred             CCCCCcEEEEEEeCCceeeEEE--ECCCCeEEEEecchhHhhhhcc-CCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033650           14 QPSEPYVLKMHLTNKYVSAQVV--HSPTATVASSASSQEKALRSTI-GCTRDVAAASKIGKLLGERLLLKDIPAVSVFLK   90 (114)
Q Consensus        14 ~~~~~~rL~V~~Snkhi~Aqvi--~~~~~~~l~saST~e~~~k~~l-~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r   90 (114)
                      ..+++|||+|++||+|||||||  ||++|+||+||||.||+ +..+ .+++|++||+.||++||+||+++||++|+|| |
T Consensus        28 ~~~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-r  105 (187)
T 1vq8_N           28 LKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-I  105 (187)
T ss_dssp             HTTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-C
T ss_pred             HhcCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEc-C
Confidence            3478999999999999999999  99999999999999999 5433 6789999999999999999999999999988 7


Q ss_pred             CCcchh--hHHHHHHHHHHHcCccc
Q 033650           91 REQRYH--GKVKAIIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yh--Grv~a~~~~lre~Gl~~  113 (114)
                      |+++||  |||+||+|++||+||+|
T Consensus       106 gg~~yh~GgRV~Ala~gAre~GL~f  130 (187)
T 1vq8_N          106 GLNSPTPGSKVFAIQEGAIDAGLDI  130 (187)
T ss_dssp             TTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred             CCceeccchHHHHHHHHhhcCCEec
Confidence            999999  99999999999999997

>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.3e-34  Score=217.08  Aligned_cols=98  Identities=17%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             CCCCcEEEEEEeCCceeeEEEE--CCCCeEEEEecchhHhh-hhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC
Q 033650           15 PSEPYVLKMHLTNKYVSAQVVH--SPTATVASSASSQEKAL-RSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR   91 (114)
Q Consensus        15 ~~~~~rL~V~~Snkhi~Aqvi~--~~~~~~l~saST~e~~~-k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~   91 (114)
                      .+++|||+|++||+||||||||  +++|+||+||||.|+++ .+++.+++|++||+.||++||+||+++||++|+|| ||
T Consensus        29 ~~~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rg  107 (203)
T 3j21_O           29 KSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILD-IG  107 (203)
T ss_dssp             TTCCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEE-CC
T ss_pred             hcCCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe-cC
Confidence            4679999999999999999998  88899999999999996 47778899999999999999999999999999998 79


Q ss_pred             Ccch--hhHHHHHHHHHHHcCccc
Q 033650           92 EQRY--HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        92 ~~~y--hGrv~a~~~~lre~Gl~~  113 (114)
                      +++|  ||||+||+|++||+||+|
T Consensus       108 g~~y~~hgRV~Ala~gAre~GL~i  131 (203)
T 3j21_O          108 LHPPVRGSSVFAVLKGAVDAGLNV  131 (203)
T ss_dssp             SSCCCTTSHHHHHHHHHHHHTCCC
T ss_pred             cceeccCcchhhhhhhcccCCeec
Confidence            9999  899999999999999987

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.96  E-value=3.8e-29  Score=196.56  Aligned_cols=97  Identities=19%  Similarity=0.174  Sum_probs=89.8

Q ss_pred             CCCcEEEEEEeCCceeeEEEECC--CCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC-------------
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHSP--TATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK-------------   80 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~~--~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~-------------   80 (114)
                      +.+|||+|++||+|||||||++.  +|+||+||||.|+.-.++..+++|.+||+.||.+||+||+++             
T Consensus        46 t~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~  125 (297)
T 2zkr_n           46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV  125 (297)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSS
T ss_pred             CCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCcccc
Confidence            45699999999999999999977  999999999999983355557899999999999999999999             


Q ss_pred             --------------CCCEEEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033650           81 --------------DIPAVSVFLKREQRY--HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        81 --------------gI~~v~~d~r~~~~y--hGrv~a~~~~lre~Gl~~  113 (114)
                                    ||.+++|| +|+++|  ||||+|+++|++|+||+|
T Consensus       126 ~g~~~~ve~~~~~~gi~~vvfD-rGl~ryttggRVfa~akGArDgGL~~  173 (297)
T 2zkr_n          126 TGDEYNVESIDGQPGAFTCYLD-AGLARTTTGNKVFGALKGAVDGGLSI  173 (297)
T ss_dssp             SSCCCCCSSSCSSSCCCBEEEE-CTTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred             ccccccccccccCCCceEEEEe-cCCcccCCCchHHHHHHHHHhcCccc
Confidence                          99999999 799999  999999999999999987

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=99.94  E-value=4e-27  Score=185.21  Aligned_cols=97  Identities=25%  Similarity=0.248  Sum_probs=90.2

Q ss_pred             CCCcEEEEEEeCCceeeEEEEC--CCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC--------CCCE-
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHS--PTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK--------DIPA-   84 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~--~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~--------gI~~-   84 (114)
                      +.+|||+|++||+||||||||+  ++|+||+||||.|++..++...++|++||+.||.+||+||+++        |+++ 
T Consensus        46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~  125 (297)
T 3u5e_D           46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEV  125 (297)
T ss_dssp             CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSC
T ss_pred             CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcccc
Confidence            4699999999999999999998  6899999999999997777667889999999999999999999        9988 


Q ss_pred             ------------------EEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033650           85 ------------------VSVFLKREQRY--HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        85 ------------------v~~d~r~~~~y--hGrv~a~~~~lre~Gl~~  113 (114)
                                        ++|| .|+.++  |+||+++++|++|+||++
T Consensus       126 ~g~~~~ve~~~~~~~~f~~~LD-vGl~rtttG~RVfaalKGA~DgGL~I  173 (297)
T 3u5e_D          126 EGEYELTEAVEDGPRPFKVFLD-IGLQRTTTGARVFGALKGASDGGLYV  173 (297)
T ss_dssp             CCCCCCCCCCSSSCCCCBCEEE-CTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred             ccceeccccccCCCCceeEEEe-cCCCccCccceehhhhhcccccCccc
Confidence                              8889 699998  999999999999999975

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=99.94  E-value=4.3e-27  Score=185.21  Aligned_cols=97  Identities=24%  Similarity=0.208  Sum_probs=90.1

Q ss_pred             CCCcEEEEEEeCCceeeEEEEC--CCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC--------CCC--
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHS--PTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK--------DIP--   83 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~--~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~--------gI~--   83 (114)
                      +.+|||+|++||+||||||||+  ++|+||+||||.|++..++...++|++||+.||.+||+||+++        |++  
T Consensus        46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~  125 (301)
T 4a17_M           46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKV  125 (301)
T ss_dssp             CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSC
T ss_pred             CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcccc
Confidence            5589999999999999999998  6889999999999998887778899999999999999999999        999  


Q ss_pred             -----------------EEEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033650           84 -----------------AVSVFLKREQRY--HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        84 -----------------~v~~d~r~~~~y--hGrv~a~~~~lre~Gl~~  113 (114)
                                       .++|| .|+.++  |+||+++++|++|+||++
T Consensus       126 ~g~~~~ve~~~~~~~~f~~~LD-~Gl~rtt~G~RVfaalKGA~DgGL~I  173 (301)
T 4a17_M          126 DGAYFNVDEDQKEKKPFKAILD-AGLVRTTTGNRVFGVLKGACDGGINI  173 (301)
T ss_dssp             CCSCCCGGGTCCSSCCCBCEEE-CTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred             ccceeecccccCCCCceEEEEe-cCCcccCcccchhhhhhcccccCccc
Confidence                             58889 699998  999999999999999975

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...

Probab=98.11  E-value=3e-05  Score=54.43  Aligned_cols=92  Identities=12%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRY   95 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~y   95 (114)
                      -....+.|+-|-+.+..+|.| .+|.++..+|+-...+++..  .+.--||..+++.++++|+|.||..+.+..+|.-  
T Consensus        14 ~~~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G--   88 (129)
T 2vqe_K           14 VASGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG--   88 (129)
T ss_dssp             CSEEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCC--
T ss_pred             ccceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC--
Confidence            445889999999999999998 55677788888766676542  4678899999999999999999999887776531  


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033650           96 HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        96 hGrv~a~~~~lre~Gl~~  113 (114)
                      -|| ++++.+|...||++
T Consensus        89 ~Gr-e~airaL~~~Gl~I  105 (129)
T 2vqe_K           89 AGR-EQAIRALQASGLQV  105 (129)
T ss_dssp             TTH-HHHHHHHHTSSSEE
T ss_pred             CCH-HHHHHHHHHCCCEE
Confidence            244 57788999899875

>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*

Probab=97.95  E-value=0.0001  Score=53.07  Aligned_cols=98  Identities=13%  Similarity=0.055  Sum_probs=71.5

Q ss_pred             CCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033650           13 YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE   92 (114)
Q Consensus        13 ~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~   92 (114)
                      .+......+.|+-|-+.+...|.|..+..++.++|. ...+++. ...+.--||...++.+|++|++.||+.+.+..+|.
T Consensus        23 ~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssg-g~~~k~~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~  100 (151)
T 2xzm_K           23 ANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTG-GMKVKAD-REESSPYAAMQAAIDVVNRCKELKINALHIKLRAK  100 (151)
T ss_dssp             TTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCH-HHHCSSG-GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred             CCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecC-cceEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcC
Confidence            444556889999999999999998766666655443 3333321 12456788999999999999999999998877642


Q ss_pred             --cc---h-hhHHHHHHHHHHHcCccc
Q 033650           93 --QR---Y-HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        93 --~~---y-hGrv~a~~~~lre~Gl~~  113 (114)
                        .+   + -|| ++++.+|..+||++
T Consensus       101 gg~~~kgpG~Gr-esairaL~~~GlkI  126 (151)
T 2xzm_K          101 GGVETKQPGPGA-QSALRALARSGMKI  126 (151)
T ss_dssp             CTTSCCSCCSHH-HHHHHHHHHTSCEE
T ss_pred             CCCCccCCCccH-HHHHHHHHHCCCEE
Confidence              21   2 244 67888898999976

>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=97.83  E-value=0.00024  Score=50.38  Aligned_cols=94  Identities=18%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             CCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC--cc
Q 033650           17 EPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE--QR   94 (114)
Q Consensus        17 ~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~--~~   94 (114)
                      ....+.|+-|-+.+...|.|..+..+|+.+|.-..-+++  ...+.--||...++.++++|++.||+.+.+..+|.  .+
T Consensus        13 ~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg--~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~   90 (137)
T 3j20_M           13 KWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKAD--RDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSK   90 (137)
T ss_dssp             EEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCT--TTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSS
T ss_pred             cceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecC--CccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCC
Confidence            456788999999999999996665788877776555554  23456779999999999999999999998877662  21


Q ss_pred             ---h-hhHHHHHHHHHHHcCccc
Q 033650           95 ---Y-HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        95 ---y-hGrv~a~~~~lre~Gl~~  113 (114)
                         + -|| ++++.+|...||++
T Consensus        91 ~~~pG~Gr-esairaL~~~Gl~I  112 (137)
T 3j20_M           91 SKTPGPGA-QAAIRALARAGLKI  112 (137)
T ss_dssp             CCSCCTHH-HHHHHHHHHHTCEE
T ss_pred             CcCCCCcH-HHHHHHHHhCCCEE
Confidence               2 244 55577888889876

>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=97.77  E-value=4.8e-05  Score=54.15  Aligned_cols=91  Identities=19%  Similarity=0.183  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchh
Q 033650           17 EPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYH   96 (114)
Q Consensus        17 ~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yh   96 (114)
                      ..+.+.|+-|-+.+...|.| .+|.++..+|+-...+++.  ..+.--||..+++.++++|+|.||+.+.+..+|.-  -
T Consensus        28 ~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~--rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G--~  102 (140)
T 3bbn_K           28 PKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT--KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPG--L  102 (140)
T ss_dssp             CCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT--SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCS--T
T ss_pred             eeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc--ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC--C
Confidence            35889999999999999998 5567778888866667763  35678899999999999999999999887776531  1


Q ss_pred             hHHHHHHHHHHHcCccc
Q 033650           97 GKVKAIIDSLREAGVKL  113 (114)
Q Consensus        97 Grv~a~~~~lre~Gl~~  113 (114)
                      || ++++.+|...||++
T Consensus       103 GR-eaairaL~~~Gl~I  118 (140)
T 3bbn_K          103 GR-DAALRAIRRSGILL  118 (140)
T ss_dssp             TS-SHHHHHHHTTTCEE
T ss_pred             cH-HHHHHHHHHCCCEE
Confidence            33 46788888889875

>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*

Probab=97.38  E-value=0.00036  Score=49.41  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=68.0

Q ss_pred             CccCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650           10 LKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFL   89 (114)
Q Consensus        10 ~~~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~   89 (114)
                      |.....-....+.|+-|-+.+...|.|..+..+ ...|+-...+++. ...+.--||...++.++++|+|.||+.+.+..
T Consensus         6 ~~~~~~~~~gi~hI~asfNNTivtvTD~~G~~~-~~~ssG~~gfKg~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~v   83 (137)
T 3u5c_O            6 QARDNSQVFGVARIYASFNDTFVHVTDLSGKET-IARVTGGMKVKAD-RDESSPYAAMLAAQDVAAKCKEVGITAVHVKI   83 (137)
T ss_dssp             -----CCCEEECCEEEETTEEEECCEETTSSSC-CCCCBTTTTSCCS-TTTTCHHHHHHHHHHHHHHHHHHTCCEEECEE
T ss_pred             eeccCceeeEEEEEEccCCCEEEEEEcCCCCEE-EEEeCCCcEEeCC-cccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence            334444555667899999999999998655444 5555554455542 11356778999999999999999999988776


Q ss_pred             CC--Ccch----hhHHHHHHHHHHHcCccc
Q 033650           90 KR--EQRY----HGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        90 r~--~~~y----hGrv~a~~~~lre~Gl~~  113 (114)
                      |+  +.+.    -| -++++.+|..+||++
T Consensus        84 ra~gg~~~kgpG~G-r~sairaL~~~Gl~I  112 (137)
T 3u5c_O           84 RATGGTRTKTPGPG-GQAALRALARSGLRI  112 (137)
T ss_dssp             ECSCTTSCCSCCGG-GHHHHHHHHTTTCEE
T ss_pred             eccCCCcccCCCcc-hHHHHHHHHhCCCEE
Confidence            52  2221    23 456677888889876

>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*

Probab=80.68  E-value=1.8  Score=37.20  Aligned_cols=40  Identities=8%  Similarity=0.077  Sum_probs=32.5

Q ss_pred             HHHHHhhCCCCEEEEecCCC------------------cchhhHHHHHHHHHHHcCccc
Q 033650           73 LGERLLLKDIPAVSVFLKRE------------------QRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        73 la~ra~e~gI~~v~~d~r~~------------------~~yhGrv~a~~~~lre~Gl~~  113 (114)
                      +|++|++.|++-+++|| |=                  .++-+-+++++|.+++.|++|
T Consensus       351 ~ad~aa~lG~e~fviDD-GWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~Gmkf  408 (729)
T 4fnq_A          351 IAKTEAELGIELFVLDD-GWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQF  408 (729)
T ss_dssp             HHHHHHHHTCCEEEECS-CCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHhcCccEEEEcc-eeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEE
Confidence            67889999999999997 31                  123345999999999999987

>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}

Probab=80.17  E-value=2.3  Score=27.32  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHH
Q 033650           63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLRE  108 (114)
Q Consensus        63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre  108 (114)
                      -.++|.+|..+|+..++.|++.+  |          +.+|++|+++
T Consensus        30 ~K~SYaIG~~mG~~L~~~g~~~l--D----------~dav~~Gl~D   63 (88)
T 3b09_A           30 QHASYGVGRQMGEQLAANSFEGI--D----------IPAVQAGLAD   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTC--C----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcccc--C----------HHHHHHHHHH
Confidence            35899999999999999988764  5          4566666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1ovya_	97	c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill	3e-20
d2gycm1	113	c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E	2e-17
d2j01s1	86	c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {	2e-17
d2zjrl1	104	c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {D	2e-13
d1vqon1	186	c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A	1e-12

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 76.4 bits (188), Expect = 3e-20
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 16  SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGE 75
           +E   L +  +NK++ AQ++    +    SAS+ +K        T ++ AA K+G+L+ +
Sbjct: 3   TERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLD--STNNIEAAKKVGELVAK 60

Query: 76  RLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
           R L K I  V VF +    YHG+VKA+ D+ REAG++
Sbjct: 61  RALEKGIKQV-VFDRGGYLYHGRVKALADAAREAGLE 96

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (171), Expect = 2e-17
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 21  LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
           L +H T +++ AQV+    + V  +AS+ EKA+   +  T +  AA+ +GK + ER L K
Sbjct: 24  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 83

Query: 81  DIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111
            I  V  F +   +YHG+V+A+ D+ REAG+
Sbjct: 84  GIKDV-SFDRSGFQYHGRVQALADAAREAGL 113

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

 Score = 69.0 bits (169), Expect = 2e-17
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 19  YVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLL 78
             L +  + K++ AQ++         SASS    L+           A ++G+ L E+ L
Sbjct: 2   LRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG-----NKTEVARQVGRALAEKAL 56

Query: 79  LKDIPAVSVFLKREQRYHGKVKAIIDSLRE 108
              I  V  F +   +YHG+VKA+ +  RE
Sbjct: 57  ALGIKQV-AFDRGPYKYHGRVKALAEGARE 85

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 58.7 bits (142), Expect = 2e-13
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 11  KTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIG 70
            T   S    L ++ ++K++ AQ++        ++ASS        +        A+ +G
Sbjct: 12  TTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSA------ALKSGNKTDTAAAVG 65

Query: 71  KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110
           K L      K I  V VF +   +YHG+VKA+ D+ RE G
Sbjct: 66  KALAAAAAEKGIKQV-VFDRGSYKYHGRVKALADAAREGG 104

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 58.8 bits (142), Expect = 1e-12
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 16  SEPYVLKMHLTNKYVSAQVVHSPTA--TVASSASSQEKALRSTIGCTRDVAAASKIGKLL 73
           S    L    +NK+V AQ+V          +SA S + A       T ++ +A   G L 
Sbjct: 29  SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLA 88

Query: 74  GERLLLKDIPAVSVFLKREQ-RYHGKVKAIIDSLREAGVKL 113
           G R     +    + +         KV AI +   +AG+ +
Sbjct: 89  GLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDI 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2gycm1	113	Ribosomal protein L18 (L18p) {Escherichia coli [Ta	100.0
d1ovya_	97	Ribosomal protein L18 (L18p) {Bacillus stearotherm	100.0
d2j01s1	86	Ribosomal protein L18 (L18p) {Thermus thermophilus	100.0
d2zjrl1	104	Ribosomal protein L18 (L18p) {Deinococcus radiodur	100.0
d1vqon1	186	Ribosomal protein L18 (L18p) {Archaeon Haloarcula	100.0
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	98.06
d2qalk1	117	Ribosomal protein S11 {Escherichia coli [TaxId: 56	97.81
d1p5dx1	146	Phosphomannomutase/phosphoglucomutase {Pseudomonas	92.21

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-41  Score=232.93  Aligned_cols=95  Identities=36%  Similarity=0.451  Sum_probs=92.0

Q ss_pred             CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033650           16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRY   95 (114)
Q Consensus        16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~y   95 (114)
                      ..+|||+|++||+|||||||||.+++||+||||+|++++.+++.++|++||+.||++||++|+++||++|+|| |++|+|
T Consensus        19 ~~~pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~vvfD-R~g~~Y   97 (113)
T d2gycm1          19 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY   97 (113)
T ss_dssp             TTCCCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCCCCB-CCSCCS
T ss_pred             CCCCeEEEEEeCCcEEEEEEEccCCcEEEEeeehhhhhhhhcCCCcchHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCcc
Confidence            3469999999999999999999999999999999999999999999999999999999999999999999988 899999


Q ss_pred             hhHHHHHHHHHHHcCc
Q 033650           96 HGKVKAIIDSLREAGV  111 (114)
Q Consensus        96 hGrv~a~~~~lre~Gl  111 (114)
                      ||||+||+|++||+||
T Consensus        98 hGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          98 HGRVQALADAAREAGL  113 (113)
T ss_dssp             SSHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHcCC
Confidence            9999999999999997

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=8.9e-41  Score=225.48  Aligned_cols=97  Identities=33%  Similarity=0.465  Sum_probs=91.7

Q ss_pred             CCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033650           14 QPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQ   93 (114)
Q Consensus        14 ~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~   93 (114)
                      +++++|||+|++||+|||||||||.+++||+++||++++++.  ...+|+++|+.||++||+||+++||++++|| ||++
T Consensus         1 gt~~rpRL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~--~~~~n~~aA~~vG~~~a~kak~~gi~~vvfD-r~g~   77 (97)
T d1ovya_           1 GTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGL--DSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RGGY   77 (97)
T ss_dssp             CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCS--SCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-STTC
T ss_pred             CCCCCCEEEEEEeCCeEEEEEEEcCCCeEEEEecchhhhhcc--cccCcHHHHHHHHHHHHHHHHHcCCCEEEEc-CCCC
Confidence            468899999999999999999999999999999999999864  3457999999999999999999999999988 8999


Q ss_pred             chhhHHHHHHHHHHHcCccc
Q 033650           94 RYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        94 ~yhGrv~a~~~~lre~Gl~~  113 (114)
                      +|||||+||+|++||+||+|
T Consensus        78 ~yhGrvka~a~~~R~~Gl~F   97 (97)
T d1ovya_          78 LYHGRVKALADAAREAGLEF   97 (97)
T ss_dssp             SSCSSTHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-38  Score=209.15  Aligned_cols=86  Identities=28%  Similarity=0.388  Sum_probs=81.9

Q ss_pred             CcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhh
Q 033650           18 PYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHG   97 (114)
Q Consensus        18 ~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhG   97 (114)
                      +|||+|++||+|||||||||.+++||+|+||.++++++     +|+++|..||++||++|+++||++|+|| |+||+|||
T Consensus         1 R~RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~-----~~~~~A~~vG~~la~~ak~~gI~~v~FD-R~g~~YHG   74 (86)
T d2j01s1           1 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG-----NKTEVARQVGRALAEKALALGIKQVAFD-RGPYKYHG   74 (86)
T ss_dssp             SCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS-----CHHHHHHHHHHHHHHHHHHTSCCCCBCC-CSTTCSSS
T ss_pred             CcEEEEEEcCCeEEEEEEEcCCCeEEEEEeccchhhcC-----CCHHHHHHHHHHHHHHHHHCCCCEEEEe-CCCCcccc
Confidence            69999999999999999999999999999999998763     6899999999999999999999999988 89999999


Q ss_pred             HHHHHHHHHHHc
Q 033650           98 KVKAIIDSLREA  109 (114)
Q Consensus        98 rv~a~~~~lre~  109 (114)
                      ||+||+|++||+
T Consensus        75 rvka~Ad~~Reg   86 (86)
T d2j01s1          75 RVKALAEGAREG   86 (86)
T ss_dssp             SCCCCSSCTTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999985

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=4.5e-37  Score=209.55  Aligned_cols=91  Identities=27%  Similarity=0.352  Sum_probs=84.3

Q ss_pred             CCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033650           13 YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE   92 (114)
Q Consensus        13 ~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~   92 (114)
                      ....++|||+||+||+|||||||||++++||+|+||.+++      .++|+++|..||++||++++++||++|+|| |||
T Consensus        14 ~~~~~rpRL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~------~~~~~~~a~~vG~~ia~~a~~kgi~~v~FD-R~g   86 (104)
T d2zjrl1          14 TAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALK------SGNKTDTAAAVGKALAAAAAEKGIKQVVFD-RGS   86 (104)
T ss_dssp             STTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCSCC------TTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-CCS
T ss_pred             cccCCCcEEEEEEccCeeEEEEEecCCCeEEEeecccccc------ccchhhHHHHHHHHHHHHHHHCCCCEEEEC-CCC
Confidence            3556789999999999999999999999999999998753      346889999999999999999999999988 899


Q ss_pred             cchhhHHHHHHHHHHHcC
Q 033650           93 QRYHGKVKAIIDSLREAG  110 (114)
Q Consensus        93 ~~yhGrv~a~~~~lre~G  110 (114)
                      |+|||||+||+|++||+|
T Consensus        87 ~~YHGrvka~ad~~R~~G  104 (104)
T d2zjrl1          87 YKYHGRVKALADAAREGG  104 (104)
T ss_dssp             SCSCSHHHHHHHHHHHHC
T ss_pred             CcchhHHHHHHHHHHhCC
Confidence            999999999999999998

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=4.5e-33  Score=206.03  Aligned_cols=98  Identities=24%  Similarity=0.133  Sum_probs=93.1

Q ss_pred             CCCCcEEEEEEeCCceeeEEE--ECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC-
Q 033650           15 PSEPYVLKMHLTNKYVSAQVV--HSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR-   91 (114)
Q Consensus        15 ~~~~~rL~V~~Snkhi~Aqvi--~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~-   91 (114)
                      .+.+|||+|++||+|||||||  |+.+++||+||||.|+..++|..+++|++||+.+|.++|+||+++||++++|| +| 
T Consensus        28 ~s~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvfD-~G~  106 (186)
T d1vqon1          28 KSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-IGL  106 (186)
T ss_dssp             TTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-CTT
T ss_pred             cCCCCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhccccCccHHHHHHHhHHHHHHHHHhhcccceEEe-eCC
Confidence            467899999999999999999  57799999999999999999999999999999999999999999999999999 57 


Q ss_pred             -CcchhhHHHHHHHHHHHcCccc
Q 033650           92 -EQRYHGKVKAIIDSLREAGVKL  113 (114)
Q Consensus        92 -~~~yhGrv~a~~~~lre~Gl~~  113 (114)
                       ++.|||||+|++|++||+||++
T Consensus       107 ~~~~yhgRV~A~akgard~GL~I  129 (186)
T d1vqon1         107 NSPTPGSKVFAIQEGAIDAGLDI  129 (186)
T ss_dssp             SCCCTTCHHHHHHHHHHHTTCBC
T ss_pred             CCCCccchHHHHHHHHHhcCccC
Confidence             8999999999999999999986

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=1.5e-05  Score=53.48  Aligned_cols=88  Identities=11%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             EEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033650           20 VLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKV   99 (114)
Q Consensus        20 rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv   99 (114)
                      .+.|+-|.+.+...+.|.. |+++..+|+-...+++.  ....-.||+.+++.+++++++.|+..+.+..+|. - .|| 
T Consensus         8 ivhI~~t~NNT~itlTD~~-Gn~i~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~-G-~gR-   81 (119)
T d2uubk1           8 RAYIHASYNNTIVTITDPD-GNPITWSSGGVIGYKGS--RKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT-G-AGR-   81 (119)
T ss_dssp             EEEEEECSSCEEEEEECTT-SCEEEEEETTTSSCCSG--GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECC-C-TTH-
T ss_pred             EEEEEeccCCEEEEEECCC-CCEEEEEecccceeccc--cccchhHHHHHHHHHHHHHHHcCCcEEEEEEEcC-C-CCh-
Confidence            5789999999999999754 57788877765556552  2456789999999999999999999987776652 1 244 


Q ss_pred             HHHHHHHHHcCccc
Q 033650          100 KAIIDSLREAGVKL  113 (114)
Q Consensus       100 ~a~~~~lre~Gl~~  113 (114)
                      .+++.+|...|+++
T Consensus        82 ~~~ik~l~~~g~kI   95 (119)
T d2uubk1          82 EQAIRALQASGLQV   95 (119)
T ss_dssp             HHHHHHHHTSSSEE
T ss_pred             HHHHHHHHHCCCEE
Confidence            57778888999876

>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=2.8e-05  Score=51.95  Aligned_cols=88  Identities=16%  Similarity=0.213  Sum_probs=67.9

Q ss_pred             EEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033650           20 VLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKV   99 (114)
Q Consensus        20 rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv   99 (114)
                      .+.|+-|.+.+...+.| .+|.++..+|+-..-+++..  .+.-.||..+++.++++|++.|++.+.+..+|. - -|| 
T Consensus         8 i~hI~~t~NNTiitlTD-~~G~~~~~~S~G~~gfkg~~--K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~-G-~GR-   81 (117)
T d2qalk1           8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEYGIKNLEVMVKGP-G-PGR-   81 (117)
T ss_dssp             EEEEECCSSCCEEEEEE-TTSCEEEEEETTTSSCCHHH--HTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECC-S-TTT-
T ss_pred             EEEEEecCCCEEEEEEC-CCCCEEEEEecccccccccc--ccchHHHHHHHHHHHHHHHHcCCcEEEEEEeCC-C-Cch-
Confidence            57788999999999997 56677777777655565532  346779999999999999999999988777652 1 234 


Q ss_pred             HHHHHHHHHcCccc
Q 033650          100 KAIIDSLREAGVKL  113 (114)
Q Consensus       100 ~a~~~~lre~Gl~~  113 (114)
                      .+++.+++.+||++
T Consensus        82 ~~air~l~~~gl~I   95 (117)
T d2qalk1          82 ESTIRALNAAGFRI   95 (117)
T ss_dssp             THHHHHHHHTTCEE
T ss_pred             HHHHHHHHhCCCEE
Confidence            46788899999876

>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.21  E-value=0.2  Score=33.14  Aligned_cols=64  Identities=25%  Similarity=0.309  Sum_probs=46.1

Q ss_pred             HhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650           51 KALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL  114 (114)
Q Consensus        51 ~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~  114 (114)
                      -++|+..+..-|-+-++.+|..+|...++.|...|++=......-.--..+++++|.+.|++++
T Consensus         9 ~dIRGi~~~~lt~~~~~~ig~a~~~~~~~~~~~~VvIg~D~R~ss~~~~~~~~~gl~~~G~~V~   72 (146)
T d1p5dx1           9 YDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVS   72 (146)
T ss_dssp             SSEEEEBTTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEE
T ss_pred             cCEeeeCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEEECCccchhhhhhhhheeeccCceEEE
Confidence            3455555556688999999999999999998888765311111112346789999999999863