Citrus Sinensis ID: 033657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHcccEEEEEEEcccEEEEEEEEccccEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEcccccEEccHHHHHHHHHHHccccEc
Coil and Loop (DISEMBL)
mvipppvrppklsnflkpyvlRMHFTnkyvsaqvihsptatvassATSQEKALRSSIGCTRDVAAASKIGKILGerlllkdipAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Flexible Loop (DISEMBL)
mvipppvrppklsnFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALrssigctrdVAAASKIGkilgerlllkdiPAVTVFLkreqryhgkvkavIDSLREAGVKLL
Low Complexity Region (SEG)
MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPtatvassatsQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Disordered region (IsUnstruct)
*************NFLKPYVLRMHFTNKYVSAQVIHSP*****************SIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSL********
Disordered Region (DISOPRED)
**************FLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEK***********VAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Disordered Region (DISEMBL)
MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPT******************GCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Disordered Region (DISPRO)
*VIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
B6EPU1	117	50S ribosomal protein L18	yes	no	0.807	0.786	0.419	9e-11
A8IAP8	120	50S ribosomal protein L18	yes	no	0.807	0.766	0.408	1e-10
C0QW11	118	50S ribosomal protein L18	yes	no	0.771	0.745	0.430	1e-10
Q89A81	121	50S ribosomal protein L18	yes	no	0.842	0.793	0.383	2e-10
Q5E898	117	50S ribosomal protein L18	yes	no	0.807	0.786	0.408	2e-10
A7IPQ4	120	50S ribosomal protein L18	yes	no	0.807	0.766	0.387	2e-10
B5FG25	117	50S ribosomal protein L18	yes	no	0.807	0.786	0.408	2e-10
P52863	117	50S ribosomal protein L18	N/A	no	0.807	0.786	0.408	3e-10
A7HM36	122	50S ribosomal protein L18	yes	no	0.763	0.713	0.375	6e-10
A5ELL1	120	50S ribosomal protein L18	yes	no	0.763	0.725	0.397	1e-09

>sp|B6EPU1|RL18_ALISL 50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T ++  AQVI    + V ++A++ EKA+R  +G T + AAA  IGK++ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            I  V  F +   +YHG+V A+ DS REAG+K 
Sbjct: 86  GITNV-AFDRSGFQYHGRVAALADSAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
Aliivibrio salmonicida (strain LFI1238) (taxid: 316275)

>sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplR PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T+K++ AQ+I         +A+S EK LRSS+    DV AA  IGK++ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            + AV VF +    YHG+VKA+ +  RE G++ 
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQF 120

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

>sp|C0QW11|RL18_BRAHW 50S ribosomal protein L18 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplR PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H + KYVSAQ+I        +SA+SQEK L+S     ++V  A +IGK+L  R   K
Sbjct: 31  LTVHKSLKYVSAQIIDDSKGITLASASSQEKDLKSG----KNVDIAKEIGKVLATRAKEK 86

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
           +I  V VF +    YHGK+K++ D  REAG+K 
Sbjct: 87  NISEV-VFDRNGYIYHGKIKSLADGAREAGLKF 118

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) (taxid: 565034)

>sp|Q89A81|RL18_BUCBP 50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rplR PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 17  KPYVLRM--HFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILG 74
           K +++R+  H T+K++ AQ+I S  A V +SA++ EK + + +  T ++ A+  IGK + 
Sbjct: 24  KLHLIRLVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIGKKIA 83

Query: 75  ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
           ER L+K I  V+ F +   +YHG+VKA+ D+ RE+G+K 
Sbjct: 84  ERALMKGIINVS-FDRSGFQYHGRVKALADAARESGLKF 121

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

>sp|Q5E898|RL18_VIBF1 50S ribosomal protein L18 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplR PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T ++  AQVI    + V ++A++ EKA+R  +G T + AAA  IGK++ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGSTSNKAAAEAIGKLIAERAIEK 85

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            I  V  F +   +YHG+V A+ +S REAG+K 
Sbjct: 86  GITNV-AFDRSGFQYHGRVAALAESAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Vibrio fischeri (strain ATCC 700601 / ES114) (taxid: 312309)

>sp|A7IPQ4|RL18_XANP2 50S ribosomal protein L18 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplR PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T++++ AQVI        ++A+S EK LR+S+    D  AA  IGK++ ER L K
Sbjct: 29  LSVHRTSQHIYAQVIDDANGETLAAASSLEKDLRTSLKTGADTDAAKTIGKLVAERALAK 88

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            + AV VF +    +HG+VKA+ +  RE G++ 
Sbjct: 89  GVTAV-VFDRGAYIFHGRVKALAEGAREGGLQF 120

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

>sp|B5FG25|RL18_VIBFM 50S ribosomal protein L18 OS=Vibrio fischeri (strain MJ11) GN=rplR PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T ++  AQVI    + V ++A++ EKA+R  +G T + AAA  IGK++ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGNTSNKAAAEAIGKLIAERAIEK 85

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            I  V  F +   +YHG+V A+ +S REAG+K 
Sbjct: 86  GITNV-AFDRSGFQYHGRVAALAESAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Vibrio fischeri (strain MJ11) (taxid: 388396)

>sp|P52863|RL18_VIBPR 50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T ++V AQVI S  + V ++A++ EKA+R  +  T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            +  V  F +   +YHG+V A+ +S REAG+K 
Sbjct: 86  GVETVA-FDRSGFQYHGRVAALAESAREAGLKF 117

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Vibrio proteolyticus (taxid: 671)

>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 26  TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
           + K++ AQ+I         +A++ EKA++  +  T ++ AA ++GK++ ER L K I  V
Sbjct: 36  SEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIAERALAKGIKEV 95

Query: 86  TVFLKREQRYHGKVKAVIDSLREAGVKL 113
            VF +   +YHG+VKA+ D+ REAG+K 
Sbjct: 96  -VFDRGGFKYHGRVKALADAAREAGLKF 122

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) (taxid: 381764)

>sp|A5ELL1|RL18_BRASB 50S ribosomal protein L18 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplR PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 26  TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
           ++K++ AQVI        +SA+S EK +RSS     D+ AA  +GK+L ER +   I  V
Sbjct: 34  SSKHIYAQVIDDQKGETLASASSMEKEMRSSGNTGADIDAAKAVGKLLAERAVKAGIKEV 93

Query: 86  TVFLKREQRYHGKVKAVIDSLREAGVKL 113
            VF +    YHG+VKA+ D+ RE+G+  
Sbjct: 94  -VFDRGGYLYHGRVKALADAARESGLSF 120

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
224096087	114	predicted protein [Populus trichocarpa]	1.0	1.0	0.798	4e-48
297812923	114	ribosomal protein L18 family protein [Ar	1.0	1.0	0.815	4e-48
15241056	114	Ribosomal L18p/L5e family protein [Arabi	1.0	1.0	0.815	5e-48
449453185	114	PREDICTED: 50S ribosomal protein L18-lik	1.0	1.0	0.798	6e-47
255542770	115	50S ribosomal protein L18, putative [Ric	1.0	0.991	0.791	2e-46
147798815	241	hypothetical protein VITISV_043330 [Viti	1.0	0.473	0.789	8e-46
226496289	114	50S ribosomal protein L18 [Zea mays] gi|	1.0	1.0	0.754	3e-44
242072312	114	hypothetical protein SORBIDRAFT_06g00163	1.0	1.0	0.763	7e-44
388498984	114	unknown [Lotus japonicus]	0.885	0.885	0.871	8e-44
357129656	114	PREDICTED: 50S ribosomal protein L18-lik	1.0	1.0	0.745	9e-44

>gi|224096087|ref|XP_002310534.1| predicted protein [Populus trichocarpa] gi|222853437|gb|EEE90984.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 106/114 (92%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPPPVR P+++ FLKPYVL+MHFTN+YV+AQV HSPTATVAS+A+SQEKALRS++  T
Sbjct: 1   MVIPPPVRAPRVTQFLKPYVLKMHFTNQYVNAQVTHSPTATVASAASSQEKALRSTMENT 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA+KIGKILGERLLLKDIPAVTVFL R Q+YHGKVKAVIDSLRE G+K++
Sbjct: 61  RDVAAAAKIGKILGERLLLKDIPAVTVFLNRNQKYHGKVKAVIDSLREVGIKII 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812923|ref|XP_002874345.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp. lyrata] gi|297320182|gb|EFH50604.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 106/114 (92%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPP VRPP+L ++LKPYVL+MHFTNK+V AQVIHSPTATVA SA+SQEKALR ++  T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA+KIGKILGERLL+KDIPAVT+ +KREQRYHGKVKAVIDS+REAGVKLL
Sbjct: 61  RDVAAAAKIGKILGERLLMKDIPAVTIQMKREQRYHGKVKAVIDSVREAGVKLL 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241056|ref|NP_198134.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana] gi|21554086|gb|AAM63167.1| unknown [Arabidopsis thaliana] gi|88011066|gb|ABD38897.1| At5g27820 [Arabidopsis thaliana] gi|332006345|gb|AED93728.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 106/114 (92%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPP VRPP+L ++LKPYVL+MHFTNK+V AQVIHSPTATVA SA+SQEKALR ++  T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAASKIGKILGERLL+KDIPAVT+ +K+EQRYHGKVKAVIDS+REAGVKLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453185|ref|XP_004144339.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus] gi|449480883|ref|XP_004156021.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 106/114 (92%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPPP++PP+L+ +LKPYVL+MHFTNK+VSAQVIHS TA VAS+A+SQEKAL+SS+  T
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA+KIGK+LGERLLLK IPAV V LKREQRYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542770|ref|XP_002512448.1| 50S ribosomal protein L18, putative [Ricinus communis] gi|223548409|gb|EEF49900.1| 50S ribosomal protein L18, putative [Ricinus communis]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 109/115 (94%), Gaps = 1/115 (0%)

Query: 1   MVIPPPVR-PPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGC 59
           MVIPPPV+ PP++++FLKPYVL+MHFTNK+VSAQVIHSP+ATVA SA+SQEKALR S+  
Sbjct: 1   MVIPPPVKWPPRVADFLKPYVLKMHFTNKFVSAQVIHSPSATVACSASSQEKALRPSMEN 60

Query: 60  TRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           TRDVAAA+KIGKILGERLL+K IPA++VFLKREQ+YHGKVKAV+DS+RE+GVKLL
Sbjct: 61  TRDVAAAAKIGKILGERLLVKGIPAISVFLKREQKYHGKVKAVVDSVRESGVKLL 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798815|emb|CAN74240.1| hypothetical protein VITISV_043330 [Vitis vinifera]

 Score =  187 bits (475), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 105/114 (92%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPPPV+PP++  FLKPYVL+MHFTNK+V+AQVIHSPTATVAS+A+SQEK LRS++  T
Sbjct: 1   MVIPPPVKPPRIMKFLKPYVLKMHFTNKFVNAQVIHSPTATVASAASSQEKTLRSTMEST 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA+ IGKILGERLLL+DIPAVTVFLKR+Q+YHGKVKAVIDSLREA   L+
Sbjct: 61  RDVAAAAMIGKILGERLLLQDIPAVTVFLKRDQKYHGKVKAVIDSLREAYFCLI 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496289|ref|NP_001152098.1| 50S ribosomal protein L18 [Zea mays] gi|226510381|ref|NP_001150322.1| 50S ribosomal protein L18 [Zea mays] gi|195608440|gb|ACG26050.1| 50S ribosomal protein L18 [Zea mays] gi|195609138|gb|ACG26399.1| 50S ribosomal protein L18 [Zea mays] gi|195638354|gb|ACG38645.1| 50S ribosomal protein L18 [Zea mays] gi|195652601|gb|ACG45768.1| 50S ribosomal protein L18 [Zea mays] gi|223943857|gb|ACN26012.1| unknown [Zea mays] gi|414588054|tpg|DAA38625.1| TPA: 50S ribosomal protein L18 isoform 1 [Zea mays] gi|414588055|tpg|DAA38626.1| TPA: 50S ribosomal protein L18 isoform 2 [Zea mays]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 103/114 (90%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPPP R  +++ FLKPY+LRMHF+NKYVSAQV+H+PTATVA SA+SQEK LR ++  T
Sbjct: 1   MVIPPPARAARVTRFLKPYLLRMHFSNKYVSAQVVHTPTATVACSASSQEKLLRPNMEST 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA+KIGK+LGERLLLK IPAV++ +KREQ+YHGKVKAVIDS+REAGVKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVSIHMKREQKYHGKVKAVIDSVREAGVKLL 114

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242072312|ref|XP_002446092.1| hypothetical protein SORBIDRAFT_06g001630 [Sorghum bicolor] gi|241937275|gb|EES10420.1| hypothetical protein SORBIDRAFT_06g001630 [Sorghum bicolor]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 102/114 (89%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPPP R  +++ FLKPY+LRMHFTNKYVSAQVIH+PT+TVA SA+SQEK LR ++  T
Sbjct: 1   MVIPPPERAARVTRFLKPYLLRMHFTNKYVSAQVIHTPTSTVACSASSQEKLLRPNMEST 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA KIGK+LGERLLLK IPAV++ +KREQ+YHGKVKAVIDS+REAGVKLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVSIHMKREQKYHGKVKAVIDSVREAGVKLL 114

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498984|gb|AFK37558.1| unknown [Lotus japonicus]

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/101 (87%), Positives = 96/101 (95%)

Query: 14  NFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKIL 73
           +FLKPYVLRMHFTNKYVSAQVIH+PTATVASSA+SQEKALRSS+   RDVAAA+KIGKIL
Sbjct: 14  DFLKPYVLRMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETKRDVAAAAKIGKIL 73

Query: 74  GERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
            ERLLLK+IPAV+V LKREQ+YHGKVKAVIDSLREAGVKLL
Sbjct: 74  AERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357129656|ref|XP_003566477.1| PREDICTED: 50S ribosomal protein L18-like [Brachypodium distachyon]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 103/114 (90%)

Query: 1   MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT 60
           MVIPPP R  ++ ++LKPY+LRMHF+NKYVSAQVIH+PTATVA SA+SQEK LRS +  T
Sbjct: 1   MVIPPPDRAARIVSYLKPYLLRMHFSNKYVSAQVIHTPTATVACSASSQEKLLRSDLEST 60

Query: 61  RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
           RDVAAA+KIGK+LGER+LLK IPAV++ +KREQ+YHGKV+AVIDS+REAGVKLL
Sbjct: 61  RDVAAAAKIGKLLGERMLLKGIPAVSIHMKREQKYHGKVRAVIDSVREAGVKLL 114

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2180310	114	AT5G27820 [Arabidopsis thalian	1.0	1.0	0.745	4.6e-41
TAIR|locus:2087535	187	AT3G20230 [Arabidopsis thalian	0.850	0.518	0.288	1.5e-10
UNIPROTKB|Q9KP00	117	rplR "50S ribosomal protein L1	0.798	0.777	0.380	2.5e-10
TIGR_CMR|VC_2580	117	VC_2580 "ribosomal protein L18	0.798	0.777	0.380	2.5e-10
TIGR_CMR|SO_0247	116	SO_0247 "ribosomal protein L18	0.789	0.775	0.347	4.7e-09
UNIPROTKB|P0C018	117	rplR "50S ribosomal subunit pr	0.798	0.777	0.347	4.2e-08
TIGR_CMR|CHY_2293	122	CHY_2293 "ribosomal protein L1	0.798	0.745	0.304	1.8e-07
TIGR_CMR|CPS_0617	117	CPS_0617 "ribosomal protein L1	0.754	0.735	0.321	2.3e-07
TIGR_CMR|GSU_2841	122	GSU_2841 "ribosomal protein L1	0.728	0.680	0.309	6.1e-07
TAIR|locus:1005716736	234	AT1G08845 [Arabidopsis thalian	0.850	0.414	0.237	6.6e-07

TAIR|locus:2180310 AT5G27820 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 85/114 (74%), Positives = 97/114 (85%)

Query:     1 MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCT 60
             MVIPP VRPP+L ++LKPYVL+MHFTNK+V AQVIHSP          QEKALR ++  T
Sbjct:     1 MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query:    61 RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
             RDVAAASKIGKILGERLL+KDIPAVT+ +K+EQRYHGKVKAVIDS+REAGVKLL
Sbjct:    61 RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2087535 AT3G20230 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/97 (28%), Positives = 56/97 (57%)

Query:    15 FLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILG 74
             +++P++L + F+ K++ A+V+H P            + +R++I    D  A   IGK++ 
Sbjct:    87 YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 146

Query:    75 ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGV 111
             ER +  D+ AV+   ++ +R  GK+  VID+++E G+
Sbjct:   147 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

UNIPROTKB|Q9KP00 rplR "50S ribosomal protein L18" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:    21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
             L +H T ++V AQVI +            EKA+R  +  T ++ AA  +GK + ER L K
Sbjct:    26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85

Query:    81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
              +  V  F +   +YHG+V A+ DS REAG+K
Sbjct:    86 GV-TVVAFDRSGFQYHGRVAALADSAREAGLK 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2580 VC_2580 "ribosomal protein L18" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:    21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
             L +H T ++V AQVI +            EKA+R  +  T ++ AA  +GK + ER L K
Sbjct:    26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85

Query:    81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
              +  V  F +   +YHG+V A+ DS REAG+K
Sbjct:    86 GV-TVVAFDRSGFQYHGRVAALADSAREAGLK 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SO_0247 SO_0247 "ribosomal protein L18" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:    21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
             L +H T +++ AQVI+ P           EKA++  +  T +V AA  +GK + ER + K
Sbjct:    26 LVVHRTPRHIYAQVIN-PEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEK 84

Query:    81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
              +  V  F +   +YHG+V A+ D+ REAG++
Sbjct:    85 GVTNVA-FDRSGFKYHGRVAALADAAREAGLQ 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0C018 rplR "50S ribosomal subunit protein L18" [Escherichia coli K-12 (taxid:83333)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 32/92 (34%), Positives = 51/92 (55%)

Query:    21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
             L +H T +++ AQVI              EKA+   +  T +  AA+ +GK + ER L K
Sbjct:    26 LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 85

Query:    81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
              I  V+ F +   +YHG+V+A+ D+ REAG++
Sbjct:    86 GIKDVS-FDRSGFQYHGRVQALADAAREAGLQ 116

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CHY_2293 CHY_2293 "ribosomal protein L18" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 28/92 (30%), Positives = 48/92 (52%)

Query:    21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
             L ++ + K++ AQ+I              +  LR  IG   ++ AA  +G+++ ER   K
Sbjct:    31 LNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGYGGNIEAAKAVGRLIAERAKAK 90

Query:    81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
              I  V VF +    YHG+VKA+ ++ RE G++
Sbjct:    91 GIEKV-VFDRGGYLYHGRVKALAEAAREGGLQ 121

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_0617 CPS_0617 "ribosomal protein L18" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query:    26 TNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
             T +++ AQ+I              +K + + I  T +VAAA+ +GK + ER + K I  +
Sbjct:    31 TPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGNVAAATAVGKAIAERAVAKGITKI 90

Query:    86 TVFLKREQRYHGKVKAVIDSLREAGVK 112
               F +    YHG+VKA+ ++ REAG++
Sbjct:    91 A-FDRSGFLYHGRVKALAEAAREAGLQ 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_2841 GSU_2841 "ribosomal protein L18" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query:    28 KYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTV 87
             +++ AQ+I              +K    S+    +V AA ++G ++ +R L K+I A  V
Sbjct:    38 QHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEKNI-ATVV 96

Query:    88 FLKREQRYHGKVKAVIDSLREAGV 111
             F +    YHG++KA+ DS RE G+
Sbjct:    97 FDRNGFLYHGRIKALADSARENGL 120

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:1005716736 AT1G08845 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
 Identities = 23/97 (23%), Positives = 49/97 (50%)

Query:    15 FLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILG 74
             +++P+ L +  + ++VSA + H              K +++ +    D+ A   IG+IL 
Sbjct:   131 YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 190

Query:    75 ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGV 111
             ER    D+   +   + + ++ GK++AV+ SL + G+
Sbjct:   191 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7Z0Q4	RL18_BACA2	No assigned EC number	0.3557	0.8859	0.8416	yes	no
A1WVA6	RL18_HALHL	No assigned EC number	0.3578	0.8245	0.8034	yes	no
P46899	RL18_BACSU	No assigned EC number	0.3557	0.8859	0.8416	yes	no
Q3IJK1	RL18_PSEHT	No assigned EC number	0.3529	0.8596	0.8448	yes	no
A4XZ74	RL18_PSEMY	No assigned EC number	0.3469	0.8333	0.8189	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
cd00432	103	cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18	2e-25
PRK05593	117	PRK05593, rplR, 50S ribosomal protein L18; Reviewe	6e-15
COG0256	125	COG0256, RplR, Ribosomal protein L18 [Translation,	1e-14
CHL00139	109	CHL00139, rpl18, ribosomal protein L18; Validated	1e-13
pfam00861	119	pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami	2e-13
TIGR00060	114	TIGR00060, L18_bact, ribosomal protein L18, bacter	4e-13
PTZ00032	211	PTZ00032, PTZ00032, 60S ribosomal protein L18; Pro	1e-04

>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

 Score = 91.1 bits (227), Expect = 2e-25
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 17  KPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGER 76
           +   L +  +NK++ AQ+I         SA++ E A++  +G   +V AA  +G++L +R
Sbjct: 10  ERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKR 69

Query: 77  LLLKDIPAVTVFLKRE-QRYHGKVKAVIDSLREAGV 111
            L K I    V   R   RYHG+VKA+    RE G+
Sbjct: 70  ALEKGI--KKVVFDRGGYRYHGRVKALAKGAREGGL 103

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified. Length = 103

>gnl|CDD|235524 PRK05593, rplR, 50S ribosomal protein L18; Reviewed

 Score = 64.8 bits (159), Expect = 6e-15
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 26  TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
           +N+++ AQVI        +SA++ EK +R+ +    +  AA K+GK++ ER   K I  V
Sbjct: 32  SNRHIYAQVIDDVKGKTLASASTLEKDVRAGLK-GGNKEAAKKVGKLIAERAKAKGIKQV 90

Query: 86  TVFLKREQRYHGKVKAVIDSLREAGVK 112
            VF +   +YHG+VKA+ D+ REAG+K
Sbjct: 91  -VFDRGGYKYHGRVKALADAAREAGLK 116

Length = 117

>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

 Score = 64.5 bits (158), Expect = 1e-14
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 11  KLSNFLKPYVLRMHFTNKYVSAQVI-HSPTATVAS-SATSQEKALRSSIGCTRDVAAASK 68
           KL        L +  +N+++ AQ+I      T+AS S  S+E       G   +  AA  
Sbjct: 22  KLLGTSGRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYL 81

Query: 69  IGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
           +GK++ ER L K I  V VF +   +YHG+V A+ D  REAG++
Sbjct: 82  VGKLIAERALAKGIEEV-VFDRGGYKYHGRVAALADGAREAGLE 124

Length = 125

>gnl|CDD|214373 CHL00139, rpl18, ribosomal protein L18; Validated

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +  +NK++ AQ+I         + ++ E  ++SS+  T    A+  +G+ L ++ L K
Sbjct: 18  LSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKK 77

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            I  V VF +  + YHG++KA+ ++ REAG++
Sbjct: 78  GITKV-VFDRGGKLYHGRIKALAEAAREAGLQ 108

Length = 109

>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 19  YVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSI--GCTRDVAAASKIGKILGER 76
             L +  +NK++ AQ+I         SA++  K L+     G   + AAA  +G +L +R
Sbjct: 24  PRLVVRRSNKHIYAQIIDDTKGGTLVSASTLSKELKKYGLKGGGNNTAAAYLVGLLLAKR 83

Query: 77  LLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
            L K I  V         YHG+V A+    REAG+  
Sbjct: 84  ALKKGIAVVVFDRGGYT-YHGRVFALAKGAREAGLNF 119

This family includes ribosomal proteins from the large subunit. This family includes L18 from bacteria and L5 from eukaryotes. It has been shown that the amino terminal 93 amino acids of rat Rpl5 are necessary and sufficient to bind 5S rRNA in vitro. Suggesting that the entire family has a function in rRNA binding. Length = 119

>gnl|CDD|213499 TIGR00060, L18_bact, ribosomal protein L18, bacterial type

 Score = 60.2 bits (146), Expect = 4e-13
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 20  VLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLL 79
            L +  +N+++ AQVI    + V +SA++ EK L+     T +  AA K+GK++ ERL  
Sbjct: 26  RLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLKY----TGNKDAAKKVGKLVAERLKE 81

Query: 80  KDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
           K I  V VF +   +YHG+V A+ ++ REAG+  
Sbjct: 82  KGIKDV-VFDRGGYKYHGRVAALAEAAREAGLNF 114

The archaeal and eukaryotic type rpL18 is not detectable under this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 114

>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRD------------VAAASK 68
           L +  TN  + A ++   T  V   + +  K L    G                + AA +
Sbjct: 108 LTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYE 167

Query: 69  IGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
           +GK++G + L K I  V  F +   +Y GKV+A+ +  R  G++ 
Sbjct: 168 LGKLIGRKALSKGISKV-RFDRAHYKYAGKVEALAEGARAVGLQF 211

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
CHL00139	109	rpl18 ribosomal protein L18; Validated	100.0
PRK05593	117	rplR 50S ribosomal protein L18; Reviewed	100.0
TIGR00060	114	L18_bact ribosomal protein L18, bacterial type. Th	100.0
PTZ00032	211	60S ribosomal protein L18; Provisional	100.0
COG0256	125	RplR Ribosomal protein L18 [Translation, ribosomal	100.0
cd00432	103	Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is	100.0
PF00861	119	Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr	100.0
PRK08569	193	rpl18p 50S ribosomal protein L18P; Reviewed	100.0
KOG3333	188	consensus Mitochondrial/chloroplast ribosomal prot	99.86
PTZ00069	300	60S ribosomal protein L5; Provisional	99.66
PTZ00090	233	40S ribosomal protein S11; Provisional	98.33
PF00411	110	Ribosomal_S11: Ribosomal protein S11; InterPro: IP	98.16
CHL00041	116	rps11 ribosomal protein S11	98.04
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	98.01
PRK05309	128	30S ribosomal protein S11; Validated	97.97
KOG0875	264	consensus 60S ribosomal protein L5 [Translation, r	97.68
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	97.63
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	97.61
PTZ00129	149	40S ribosomal protein S14; Provisional	97.4
COG0100	129	RpsK Ribosomal protein S11 [Translation, ribosomal	96.82
KOG0408	190	consensus Mitochondrial/chloroplast ribosomal prot	95.81
KOG0407	139	consensus 40S ribosomal protein S14 [Translation,	93.4
smart00481	67	POLIIIAc DNA polymerase alpha chain like domain. D	82.11
PF14419	173	SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fus	80.51

>CHL00139 rpl18 ribosomal protein L18; Validated

Probab=100.00  E-value=5.9e-42  Score=238.71  Aligned_cols=102  Identities=26%  Similarity=0.403  Sum_probs=98.7

Q ss_pred             CccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033657           11 KLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLK   90 (114)
Q Consensus        11 ~~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r   90 (114)
                      |+.++..+|||+|++||+|||||||||.+|+||+||||.||++++++++++|++||+.+|++||+||+++||++|+|| |
T Consensus         8 ki~g~~~rpRL~V~rSnkhiyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~gi~~vvfD-r   86 (109)
T CHL00139          8 KIKGTAERPRLSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKGITKVVFD-R   86 (109)
T ss_pred             eecCCCCCCEEEEEEeCCeEEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEc-C
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999999999 7


Q ss_pred             CCcchhhHHHHHHHHHHHcCccc
Q 033657           91 REQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      |+|+|||||+||+|++||+||+|
T Consensus        87 gg~~yhGrV~a~a~~are~GL~f  109 (109)
T CHL00139         87 GGKLYHGRIKALAEAAREAGLQF  109 (109)
T ss_pred             CCCccchHHHHHHHHHHHhCCCC
Confidence            99999999999999999999997

>PRK05593 rplR 50S ribosomal protein L18; Reviewed

Probab=100.00  E-value=8.1e-40  Score=230.38  Aligned_cols=101  Identities=35%  Similarity=0.472  Sum_probs=95.7

Q ss_pred             CccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033657           11 KLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLK   90 (114)
Q Consensus        11 ~~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r   90 (114)
                      ++.++..+|||+|++||+||||||+||++++||+||||.||+++..+. ++|++||+.||++||+||+++||++|+|| |
T Consensus        17 ki~g~~~rpRL~V~~SnkhiyAQvidd~~~~tl~saST~e~~~k~~~~-~~n~~aa~~vG~~la~ra~~~gi~~vvfD-r   94 (117)
T PRK05593         17 KISGTAERPRLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVRAGLK-GGNKEAAKKVGKLIAERAKAKGIKQVVFD-R   94 (117)
T ss_pred             HhcCCCCCCEEEEEEeCCeEEEEEEECCCCEEEEEEecCcHhHhcccc-CCCHHHHHHHHHHHHHHHHHCCCCEEEEc-C
Confidence            356789999999999999999999999999999999999999976654 89999999999999999999999999999 7


Q ss_pred             CCcchhhHHHHHHHHHHHcCccc
Q 033657           91 REQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      |+++|||||+||+|++||+||+|
T Consensus        95 g~~~yhGrV~a~a~~are~Gl~f  117 (117)
T PRK05593         95 GGYKYHGRVKALADAAREAGLKF  117 (117)
T ss_pred             CCCcccHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999997

>TIGR00060 L18_bact ribosomal protein L18, bacterial type

Probab=100.00  E-value=9.4e-40  Score=229.15  Aligned_cols=97  Identities=35%  Similarity=0.460  Sum_probs=91.9

Q ss_pred             ccCCC--CCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033657           12 LSNFL--KPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFL   89 (114)
Q Consensus        12 ~~~~~--~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~   89 (114)
                      +.++.  .+|||+||+||+|||||||||.+++||+||||+|++++    +++|+++|+.||++||+||+++||++|+|| 
T Consensus        16 i~gt~~~~rpRL~V~rSnk~iyaQiIdd~~~~tlasaST~ek~~~----~~~n~~aA~~vG~~la~ra~~~gi~~vvfD-   90 (114)
T TIGR00060        16 LRETGEANRPRLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLK----YTGNKDAAKKVGKLVAERLKEKGIKDVVFD-   90 (114)
T ss_pred             hcCCCCCCCcEEEEEEeCCeEEEEEEECCCCEEEEEEecchhhhc----CCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence            44566  78999999999999999999999999999999999876    678999999999999999999999999999 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCccc
Q 033657           90 KREQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        90 r~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      ||+|+|||||+||+|++||+||+|
T Consensus        91 rgg~~YhGrv~A~a~~aRe~Gl~F  114 (114)
T TIGR00060        91 RGGYKYHGRVAALAEAAREAGLNF  114 (114)
T ss_pred             CCCCcchHHHHHHHHHHHHhCCCC
Confidence            799999999999999999999997

The archaeal and eukaryotic type rpL18 is not detectable under this model.

>PTZ00032 60S ribosomal protein L18; Provisional

Probab=100.00  E-value=1.5e-38  Score=240.63  Aligned_cols=100  Identities=25%  Similarity=0.331  Sum_probs=94.9

Q ss_pred             cCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccC------------CCCCHHHHHHHHHHHHHHHhhC
Q 033657           13 SNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIG------------CTRDVAAASKIGKILGERLLLK   80 (114)
Q Consensus        13 ~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~------------~~~n~~Aa~~vG~~la~R~~e~   80 (114)
                      ....++|||+||+||+|||||||||.+++|||||||+++++++.+.            .++|++||+.||++||+||+++
T Consensus       100 ~~gkrrPRLsV~RSnkHIYAQIIDD~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~k  179 (211)
T PTZ00032        100 IKGKRRPRLTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSK  179 (211)
T ss_pred             HcCCCcceEEEEecCCeEEEEEEECCCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHC
Confidence            3567899999999999999999999999999999999999988665            5789999999999999999999


Q ss_pred             CCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033657           81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        81 gI~~v~~d~r~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      ||++|+|| ||||+|||||+||||++||+||+|
T Consensus       180 GI~kVvFD-RgGy~YHGRVkALAdaARe~GLkF  211 (211)
T PTZ00032        180 GISKVRFD-RAHYKYAGKVEALAEGARAVGLQF  211 (211)
T ss_pred             CCCEEEEe-CCCCeehhHHHHHHHHHHHcCCCC
Confidence            99999999 899999999999999999999987

>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-37  Score=220.00  Aligned_cols=101  Identities=32%  Similarity=0.409  Sum_probs=95.4

Q ss_pred             ccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhc--ccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033657           12 LSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRS--SIGCTRDVAAASKIGKILGERLLLKDIPAVTVFL   89 (114)
Q Consensus        12 ~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~--~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~   89 (114)
                      +.+..++|||+|++||+|||||||||..+.++++|||.++++++  +...++|+++|++||+++|+||+++||++++|| 
T Consensus        23 l~g~~~rpRL~V~rSnkhi~aQiId~~~~~tla~aSt~~~~l~~~g~~~~~~N~~aA~~vG~lia~ra~~kgi~~vVfd-  101 (125)
T COG0256          23 LLGTSGRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERALAKGIEEVVFD-  101 (125)
T ss_pred             hccCCCCcEEEEEEeCCcEEEEEEEcCCCceEEEEEcchHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEc-
Confidence            44788999999999999999999999999999999999999965  566778999999999999999999999999998 


Q ss_pred             CCCcchhhHHHHHHHHHHHcCccc
Q 033657           90 KREQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        90 r~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      |++|+|||||+|++|++||+||+|
T Consensus       102 r~g~~yhgRV~Ala~~AreaGL~f  125 (125)
T COG0256         102 RGGYKYHGRVAALADGAREAGLEF  125 (125)
T ss_pred             CCCCCcchHHHHHHHHHHHcCcCC
Confidence            799999999999999999999997

>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit

Probab=100.00  E-value=8.3e-37  Score=209.47  Aligned_cols=100  Identities=32%  Similarity=0.414  Sum_probs=95.9

Q ss_pred             CccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033657           11 KLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLK   90 (114)
Q Consensus        11 ~~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r   90 (114)
                      +..+...+|||+|++||+||||||+||.+++||++|||.||++++++++++|.+||+.+|++||+||+++|+++++|| |
T Consensus         4 ~~~~~~~~~RL~v~~Sn~~i~aqvi~~~~~~vl~sast~e~~~~~~~~~~~n~~aA~~vG~~la~r~~~~gi~~vv~D-~   82 (103)
T cd00432           4 KRLGTQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEKGIKKVVFD-R   82 (103)
T ss_pred             EecCcCCCCEEEEEEeCCEEEEEEEEeCcCeEEEEEecCchhhcccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-C
Confidence            345677899999999999999999999999999999999999999999999999999999999999999999999999 7


Q ss_pred             CCcchhhHHHHHHHHHHHcCc
Q 033657           91 REQRYHGKVKAVIDSLREAGV  111 (114)
Q Consensus        91 ~~~~yhGrV~a~~~~lre~Gl  111 (114)
                      ++++|||||+||+|++||+||
T Consensus        83 ~~~~~~grv~a~~~~~r~~Gl  103 (103)
T cd00432          83 GGYRYHGRVKALAKGAREGGL  103 (103)
T ss_pred             CCcccccHHHHHHHHHHHcCC
Confidence            999999999999999999997

L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.

>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.7e-36  Score=213.51  Aligned_cols=100  Identities=32%  Similarity=0.445  Sum_probs=94.1

Q ss_pred             cCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcc--cCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033657           13 SNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSS--IGCTRDVAAASKIGKILGERLLLKDIPAVTVFLK   90 (114)
Q Consensus        13 ~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~--l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r   90 (114)
                      .+..++|||+|++||+||||||+||.++.++++|||.|+++++.  ..+++|++||+.||++||+||+++||..++|| |
T Consensus        18 ~~~~~~~RL~V~~Snk~i~aQii~~~~~~~l~~aSt~~~~l~~~~~~~~~~n~~aa~~vG~lla~ra~~~gi~~v~fd-r   96 (119)
T PF00861_consen   18 KGTAERPRLVVFRSNKHIYAQIIDDSKGGTLASASTLSKELKKYGWKGSTKNVEAAYLVGELLAKRALEKGIAKVVFD-R   96 (119)
T ss_dssp             HHTTSSEEEEEEEESSEEEEEEEECTTTEEEEEEEEETTTGGGTT-SSTTSSHHHHHHHHHHHHHHHHHTTSSEEEEC-T
T ss_pred             hcCCCCCEEEEEeccCeEEEEEEeeCCCCeEEEEEecchhhhhhhhccCCCCEehHHHHHHHHHHHHHHcCCcEEEEc-C
Confidence            45678899999999999999999999999999999999999975  47788999999999999999999999999998 7


Q ss_pred             CCcchhhHHHHHHHHHHHcCccc
Q 033657           91 REQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      ++++|||||+||+|++||+||+|
T Consensus        97 ~~~~y~grv~a~~~~~re~Gl~f  119 (119)
T PF00861_consen   97 GGYKYHGRVKALADGAREGGLEF  119 (119)
T ss_dssp             STSSSSSHHHHHHHHHHHTTCB-
T ss_pred             CCCcccHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....

>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed

Probab=100.00  E-value=5e-34  Score=215.24  Aligned_cols=97  Identities=25%  Similarity=0.202  Sum_probs=93.5

Q ss_pred             CCCcEEEEEEeCCceEEEEE--eCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033657           16 LKPYVLRMHFTNKYVSAQVI--HSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQ   93 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvi--d~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~   93 (114)
                      ..+|||+|++||+|||||||  ||.+|+||+||||.|++.+++..+++|++||+.||.++|+||+++||++|+|| ||++
T Consensus        30 ~~kpRLvV~rSNkhIyaQiI~~dd~gd~tLaSAsS~el~~~g~~~~~~N~~AAy~vG~llA~ral~kGi~~vvfD-rGg~  108 (193)
T PRK08569         30 SGKPRLVVRKTNKHVIAQIVKYDPKGDRTLASAHSRELAKYGWKGDTGNTPAAYLTGLLAGKKALKAGVEEAVLD-IGLH  108 (193)
T ss_pred             cCCCEEEEEEeCCeEEEEEEEccCCCCEEEEEEecCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCc
Confidence            45799999999999999999  89999999999999999999988999999999999999999999999999999 6999


Q ss_pred             chh--hHHHHHHHHHHHcCccc
Q 033657           94 RYH--GKVKAVIDSLREAGVKL  113 (114)
Q Consensus        94 ~yh--GrV~a~~~~lre~Gl~~  113 (114)
                      +||  |||+|++|++||+||+|
T Consensus       109 ~yh~gGRV~A~akgArd~GL~f  130 (193)
T PRK08569        109 RPTKGSRVFAALKGAIDAGLEI  130 (193)
T ss_pred             cccCCccHHHHHHHHHHcCCcC
Confidence            999  99999999999999987

>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.6e-21  Score=143.40  Aligned_cols=94  Identities=27%  Similarity=0.322  Sum_probs=84.1

Q ss_pred             cEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhH
Q 033657           19 YVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGK   98 (114)
Q Consensus        19 ~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGr   98 (114)
                      |+|.|.++..|+.+-|.|..+|.+| ||||.||+|+++||++.|++||.++|++||+||+++||.++++...-...-...
T Consensus        61 h~lev~~~~~hveg~v~H~~~gvvv-SAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~fm~~~~t~ea~~~s~  139 (188)
T KOG3333|consen   61 HRLEVIRTQHHVEGLVEHQNGGVVV-SASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINFMVYQPTPEAAASSS  139 (188)
T ss_pred             eEEEEeecccceeeeeeEecCCEEE-EecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcceeccCCChhhccchH
Confidence            8999999999999999998777666 999999999999999999999999999999999999999998764223345667


Q ss_pred             HHHHHHHHHHcCccc
Q 033657           99 VKAVIDSLREAGVKL  113 (114)
Q Consensus        99 V~a~~~~lre~Gl~~  113 (114)
                      .+-|..++.|+|+.|
T Consensus       140 ~q~l~~a~~e~Gv~l  154 (188)
T KOG3333|consen  140 MQRLQSAMTEGGVVL  154 (188)
T ss_pred             HHHHHHHHHhCCeee
Confidence            888999999999976

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=99.66  E-value=3.6e-16  Score=124.23  Aligned_cols=95  Identities=22%  Similarity=0.208  Sum_probs=85.8

Q ss_pred             CcEEEEEEeCCceEEEEEe--CCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhC--------CCC----
Q 033657           18 PYVLRMHFTNKYVSAQVIH--SPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK--------DIP----   83 (114)
Q Consensus        18 ~~RL~V~~Snkhi~Aqvid--~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~--------gI~----   83 (114)
                      +|||+|.+||++|.|||+.  .+++.||++|+|.|+.-.+|..+.+|.+|||.+|.++|.|++++        |++    
T Consensus        48 K~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g  127 (300)
T PTZ00069         48 KYRLVVRITNKDIICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADG  127 (300)
T ss_pred             CceEEEEEECCcEEEEEEEeecCCCEEEEEeehhhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccC
Confidence            6999999999999999998  56999999999999999999999999999999999999999998        773    


Q ss_pred             ----------------EEEEecCCC--cchhhHHHHHHHHHHHcCccc
Q 033657           84 ----------------AVTVFLKRE--QRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        84 ----------------~v~~d~r~~--~~yhGrV~a~~~~lre~Gl~~  113 (114)
                                      ++++|. |-  ...++||+|+++|+.++||.+
T Consensus       128 ~~y~v~e~~~~~~rpf~a~LDi-GL~rtt~G~RVFaalKGa~DgGl~I  174 (300)
T PTZ00069        128 EYYHVDEEDDEERRPFKAILDV-GLARTTTGNRVFGALKGAVDGGLHI  174 (300)
T ss_pred             cccccccccccCCCCceEEEee-ccccCCCCceeeeehhcccccCccc
Confidence                            667886 63  346789999999999999975

>PTZ00090 40S ribosomal protein S11; Provisional

Probab=98.33  E-value=1.4e-05  Score=61.91  Aligned_cols=100  Identities=16%  Similarity=0.247  Sum_probs=80.3

Q ss_pred             CCCCccCCCCCcEEEEEEeCCceEEEEEeCCCCe-EEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEE
Q 033657            8 RPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTAT-VASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVT   86 (114)
Q Consensus         8 ~~~~~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~-~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~   86 (114)
                      |+-.+..-...+.++|.-|-+++.++|.|..++. ||+-+|+-...+++..  .+.--||+.+++.+|++|++.||.+|.
T Consensus       108 ~~~~i~~p~~~f~~vI~aSfNNTIVTlTD~~GNv~tl~WSSAG~~GFKGsK--KsTpfAAQ~aae~aakka~~~GIk~V~  185 (233)
T PTZ00090        108 KNGLIIEPTDRFMLVITTSKNNVHAQVVNKSKNYKTVFGSFAGNVGFRKKL--QQSERCAYRIGENIAKKCRRLGIFAVD  185 (233)
T ss_pred             cCCcEecCCCcEEEEEEeccCcEEEEEEeCCCCEEEEEEEcccccCcccCc--cCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            3445555566799999999999999999966554 6877777777676643  345678999999999999999999998


Q ss_pred             EecCCCcchhhHHHHHHHHHHHcCccc
Q 033657           87 VFLKREQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        87 ~d~r~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      +..+|.    |..++++.++..+||++
T Consensus       186 V~vKGp----GgREtALRaL~~~GLkI  208 (233)
T PTZ00090        186 IKFRRI----MRVETVLQAFYANGLQV  208 (233)
T ss_pred             EEEeCC----ChHHHHHHHHHHCCCEE
Confidence            877554    34899999999999986

>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.16  E-value=3.3e-05  Score=53.63  Aligned_cols=87  Identities=14%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             EEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHH
Q 033657           21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVK  100 (114)
Q Consensus        21 L~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV~  100 (114)
                      +.|+-|.++...++.| .+|.++.+.|+-...+++..  .....||+.+++.++++|++.||+.+.+..+|.  --||- 
T Consensus         3 ihI~~s~NNt~vtlTd-~~G~~~~~~S~G~~gfK~~r--k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~--g~gr~-   76 (110)
T PF00411_consen    3 IHIKSSFNNTIVTLTD-LKGNVLFWSSAGSLGFKGAR--KSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGF--GPGRE-   76 (110)
T ss_dssp             EEEEEESSEEEEEEEE-TTSEEEEEEETTTSSTTTTC--GSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESS--STTHH-
T ss_pred             EEEEecCCCEEEEEEC-CCCCEEEEEecccccccccc--ccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCC--CccHH-
Confidence            6788999999999999 55888889898887777643  567899999999999999999999988877551  13444 


Q ss_pred             HHHHHHHHcCccc
Q 033657          101 AVIDSLREAGVKL  113 (114)
Q Consensus       101 a~~~~lre~Gl~~  113 (114)
                      +++.++...|+++
T Consensus        77 ~~lk~l~~~gl~I   89 (110)
T PF00411_consen   77 AALKALKKSGLKI   89 (110)
T ss_dssp             HHHHHHHHTTSEE
T ss_pred             HHHHHHHhcCCEE
Confidence            5568888899876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....

>CHL00041 rps11 ribosomal protein S11

Probab=98.04  E-value=9.9e-05  Score=51.86  Aligned_cols=88  Identities=15%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             EEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033657           20 VLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKV   99 (114)
Q Consensus        20 RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV   99 (114)
                      .+.|+.|.++....+.|. .|.+++++|+-...+++..  ....-||..+++.++++|++.|++.+.+..+|. - .|| 
T Consensus        15 i~hI~~t~NNTiiTlTd~-~G~~l~~~S~G~~gfKg~r--K~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~-G-~Gr-   88 (116)
T CHL00041         15 VIHIQASFNNTIVTVTDV-RGRVISWSSAGACGFKGAR--KGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGP-G-LGR-   88 (116)
T ss_pred             EEEEEcccCCEEEEEEcC-CCCEEEEEecCceeeCCCc--cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-CcH-
Confidence            478999999999999985 5788989988877777643  456789999999999999999999998887653 2 355 


Q ss_pred             HHHHHHHHHcCccc
Q 033657          100 KAVIDSLREAGVKL  113 (114)
Q Consensus       100 ~a~~~~lre~Gl~~  113 (114)
                      ++++.+++..||++
T Consensus        89 ~~~ir~l~~~glkI  102 (116)
T CHL00041         89 DTALRAIRRSGLKL  102 (116)
T ss_pred             HHHHHHHHHCCCEE
Confidence            66779999999976

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=98.01  E-value=0.00013  Score=50.66  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             EEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHH
Q 033657           21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVK  100 (114)
Q Consensus        21 L~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV~  100 (114)
                      +.|+.|.++....+.|. +|.+++.+|+-...+++.  ...+.-||..+++.++++|++.||..+.+..+|. - -|| +
T Consensus         3 ~hI~~s~NNT~itlTd~-~g~~~~~~S~G~~gfkg~--rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~-G-~gr-~   76 (108)
T TIGR03632         3 AHIHATFNNTIVTITDP-QGNVLSWASAGAVGFKGS--KKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGP-G-AGR-E   76 (108)
T ss_pred             EEEEccCCCEEEEEEcC-CCCEEEEEecCceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-CcH-H
Confidence            67889999999999996 566888888877777764  3456889999999999999999999998887653 2 244 6


Q ss_pred             HHHHHHHHcCccc
Q 033657          101 AVIDSLREAGVKL  113 (114)
Q Consensus       101 a~~~~lre~Gl~~  113 (114)
                      +++.++...||++
T Consensus        77 ~~ir~l~~~glkI   89 (108)
T TIGR03632        77 SAIRALQAAGLEV   89 (108)
T ss_pred             HHHHHHHHCCCEE
Confidence            7888888899876

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>PRK05309 30S ribosomal protein S11; Validated

Probab=97.97  E-value=0.00017  Score=51.58  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=71.6

Q ss_pred             cEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhH
Q 033657           19 YVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGK   98 (114)
Q Consensus        19 ~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGr   98 (114)
                      -.+.|+-|.++....+.|. .|.+++.+|.-...+++.  ..+..-||..+++.+++.|++.||+.+.+..+|. - -||
T Consensus        18 gi~hI~~t~NNTiitlTd~-~G~~~~~~S~G~~gfKg~--rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~-G-~Gr   92 (128)
T PRK05309         18 GVAHIHATFNNTIVTITDR-QGNVISWASAGGLGFKGS--RKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGP-G-SGR   92 (128)
T ss_pred             eEEEEEccCCCEEEEEEcC-CCCEEEEEecCccEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECC-C-CcH
Confidence            3688999999999999994 677888888776666664  3456789999999999999999999998887653 2 244


Q ss_pred             HHHHHHHHHHcCccc
Q 033657           99 VKAVIDSLREAGVKL  113 (114)
Q Consensus        99 V~a~~~~lre~Gl~~  113 (114)
                       ++++.+|...||++
T Consensus        93 -~~air~L~~~glkI  106 (128)
T PRK05309         93 -ESAIRALQAAGLEV  106 (128)
T ss_pred             -HHHHHHHHHCCCEE
Confidence             67778888899876

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=3.7e-05  Score=60.56  Aligned_cols=97  Identities=18%  Similarity=0.124  Sum_probs=77.0

Q ss_pred             CCCcEEEEEEeCCceEEEEEe--CCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhh-CCCCEE-------
Q 033657           16 LKPYVLRMHFTNKYVSAQVIH--SPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLL-KDIPAV-------   85 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvid--~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e-~gI~~v-------   85 (114)
                      ...|||.|..+|+.+.+|+.-  -+.+.++++|.+.|+...+.+.+..|-.||+.+|.+||.|+++ .|+++.       
T Consensus        46 t~kyR~ivr~~n~~iicqi~~~~i~gd~v~~~a~s~elpkyg~~~GLtNyaAay~TglLLarR~l~~~gmD~~yeg~~e~  125 (264)
T KOG0875|consen   46 TPKYRMIVRVINKDIICQIAYATIEGDVIVRAAYAHELPKYGVKVGLTNYAAAYCTGLLLACRLLKRFGMDKIYEGQVEV  125 (264)
T ss_pred             CCceEEEEEEechhhHHHHHhheecceEEEEeeccccccccccccccchhHHHHhhHHHHHHHHHHHhCcccccccceee
Confidence            456999999999999999987  3477889999999999888888889999999999999999997 675542       


Q ss_pred             -------------------EEecCCCc--chhhHHHHHHHHHHHcCccc
Q 033657           86 -------------------TVFLKREQ--RYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        86 -------------------~~d~r~~~--~yhGrV~a~~~~lre~Gl~~  113 (114)
                                         .+|. |-.  ....||...++++.++||.+
T Consensus       126 ~gde~~~e~idgq~~aFt~~Ld~-GLaRtttg~kvFGAlkga~dGGL~I  173 (264)
T KOG0875|consen  126 TGDEYNVESIDGQPGAFTCYLDA-GLARTTTGNKVFGALKGAVDGGLSI  173 (264)
T ss_pred             cCcccccccccCCCCCeEEEecc-cccccCCCceeeeeeehhcccceec
Confidence                               1111 111  13448888999999999864

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=97.63  E-value=0.00096  Score=48.12  Aligned_cols=92  Identities=13%  Similarity=0.098  Sum_probs=68.5

Q ss_pred             EEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC-C-c--c-
Q 033657           20 VLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR-E-Q--R-   94 (114)
Q Consensus        20 RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~-~-~--~-   94 (114)
                      .+.|+-|-++....|.|..+..+++.+|.-...+++.  ..+.--||...++.++++|++.||+.|.+..+| | .  + 
T Consensus        11 i~hI~as~NNTivtvTD~~G~~~~~~~S~G~~g~kg~--kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~   88 (132)
T PRK09607         11 IAHIYASFNNTIITITDLTGAETIAKSSGGMVVKADR--DESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKS   88 (132)
T ss_pred             EEEEEcccCCeEEEEEcCCCCEEEEEecCcceeeCCC--ccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcC
Confidence            5788999999999999966556887777765555442  133556899999999999999999999888876 1 1  1 


Q ss_pred             hhhHHHHHHHHHHHcCccc
Q 033657           95 YHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        95 yhGrV~a~~~~lre~Gl~~  113 (114)
                      ..--=++.+.+|...||++
T Consensus        89 ~G~Gr~~airal~~~glkI  107 (132)
T PRK09607         89 PGPGAQAAIRALARAGLRI  107 (132)
T ss_pred             CCCcHHHHHHHHHHCCCEE
Confidence            1112456678888899886

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=97.61  E-value=0.0013  Score=46.32  Aligned_cols=91  Identities=11%  Similarity=0.064  Sum_probs=68.3

Q ss_pred             EEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccc---h
Q 033657           21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR--EQR---Y   95 (114)
Q Consensus        21 L~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~--~~~---y   95 (114)
                      +.|+-|-++....|.|..+..+++-+|+-...+++..  .+.--||....+.++++|++.||+.+.+..||  +.+   .
T Consensus         5 ~hI~as~NNTiitvTD~~G~~~~~~~S~G~~g~kg~k--k~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~   82 (114)
T TIGR03628         5 AHIYSSFNNTIITITDITGAETIARSSGGMVVKADRD--ESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSP   82 (114)
T ss_pred             EEEEccCCCeEEEEEcCCCCEEEEEecCcceEeCCCc--cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCC
Confidence            5678888999999999666578888777666555422  34556899999999999999999999888876  122   1


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033657           96 HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        96 hGrV~a~~~~lre~Gl~~  113 (114)
                      .---++.+.+|...||++
T Consensus        83 G~Gr~~air~l~~~glkI  100 (114)
T TIGR03628        83 GPGAQAAIRALARAGLRI  100 (114)
T ss_pred             CCcHHHHHHHHHHCCCEE
Confidence            112356678889999986

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>PTZ00129 40S ribosomal protein S14; Provisional

Probab=97.40  E-value=0.0024  Score=46.93  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             cEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccchh
Q 033657           19 YVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR--EQRYH   96 (114)
Q Consensus        19 ~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~--~~~yh   96 (114)
                      =.+.|+-|-++...+|.|.. |.+++.+|+-...+++... .+.--||....+.++++|++.||+.+.+..|+  |...+
T Consensus        29 Gi~hI~as~NNTiItiTD~~-G~~~~w~SsG~~gfKg~r~-KsTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~k  106 (149)
T PTZ00129         29 GVAHIFASFNDTFIHVTDLS-GRETLVRVTGGMKVKADRD-ESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTK  106 (149)
T ss_pred             EEEEEEcccCCeEEEEEccc-CCEEEEEecCcceeccccc-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCC
Confidence            35789999999999999854 6666677776666665321 23456899999999999999999999888753  22221


Q ss_pred             h---HHHHHHHHHHHcCccc
Q 033657           97 G---KVKAVIDSLREAGVKL  113 (114)
Q Consensus        97 G---rV~a~~~~lre~Gl~~  113 (114)
                      |   -=++.+.+|..+||++
T Consensus       107 g~GpGr~~airaL~~~glkI  126 (149)
T PTZ00129        107 TPGPGAQAALRALARAGLKI  126 (149)
T ss_pred             CCCCCHHHHHHHHHHCCCEE
Confidence            1   2467778999999986

>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=96.82  E-value=0.015  Score=41.89  Aligned_cols=87  Identities=22%  Similarity=0.185  Sum_probs=64.4

Q ss_pred             EEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHH
Q 033657           21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVK  100 (114)
Q Consensus        21 L~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV~  100 (114)
                      .-|+.|-++....+.| .+|.+++.+||=-.-+++.-  .+.--||...++.+++.++|.||..+.+..+|.-  -| -+
T Consensus        21 ahI~asfNNTivtitD-~~Gn~i~wassG~~gfk~~r--k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG--~G-re   94 (129)
T COG0100          21 AHIHASFNNTIVTITD-LTGNVIIWASSGGMGFKGSR--KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPG--PG-RE   94 (129)
T ss_pred             EEEEcccCCcEEEecC-CCCCEEEEEecCCceEcCCC--CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCC--Cc-HH
Confidence            4466676666667766 67888889999888887754  4566788888999999999999998887766611  23 35


Q ss_pred             HHHHHHHHcCccc
Q 033657          101 AVIDSLREAGVKL  113 (114)
Q Consensus       101 a~~~~lre~Gl~~  113 (114)
                      ++..+|..+|+++
T Consensus        95 aAiraL~~ag~~i  107 (129)
T COG0100          95 AAIRALAAAGLKI  107 (129)
T ss_pred             HHHHHHHHccceE
Confidence            6667777888764

>KOG0408 consensus Mitochondrial/chloroplast ribosomal protein S11 [Translation, ribosomal structure and biogenesis]

Probab=95.81  E-value=0.12  Score=38.95  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=70.6

Q ss_pred             CCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033657           14 NFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQ   93 (114)
Q Consensus        14 ~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~   93 (114)
                      .|.+-|-..|.-|.++...+|.| ..|.++..+|----.+++.-  .+.--||...|--.+.|+.+.|+..|.+-.+|. 
T Consensus        75 ~f~eiPi~hIraS~NNTivtVtd-~kg~vi~~~ScgteGFrntr--kgT~iAaQtaavaa~~r~v~~G~~~vrV~VkGl-  150 (190)
T KOG0408|consen   75 NFREIPIIHIRASFNNTIVTVTD-VKGEVISWSSCGTEGFRNTR--KGTPIAAQTAAVAAIRRAVDQGMQTVRVRVKGL-  150 (190)
T ss_pred             cccccceEEEEecCCCeEEEEEc-cCCcEEEEeecccccccccc--cCCchhHHHHHHHHHHHHHHhcceEEEEEEecC-
Confidence            45666788999999999999998 66788866665555566532  234567888888999999999999887766542 


Q ss_pred             chhhHHHHHHHHHHHcCccc
Q 033657           94 RYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        94 ~yhGrV~a~~~~lre~Gl~~  113 (114)
                       =-||..| +.+|+-+||.+
T Consensus       151 -GpGRmsa-~kgl~m~Gl~v  168 (190)
T KOG0408|consen  151 -GPGRMSA-LKGLRMGGLLV  168 (190)
T ss_pred             -CccHHHH-HhhhhhcceEE
Confidence             2466655 68999999865

>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=93.40  E-value=1.3  Score=31.61  Aligned_cols=91  Identities=11%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             EEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--Ccc---h
Q 033657           21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR--EQR---Y   95 (114)
Q Consensus        21 L~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~--~~~---y   95 (114)
                      ..||-|-+.....|.|-.+..||+-.+---+ .|.+ ..-++--||-+-....|.+|++.||+.+.|-.|.  |-+   .
T Consensus        19 ahi~asfndtfvhitdlsg~eti~rvtggmk-vkad-rdesspyaamlaaqdva~kck~~gi~alh~klratgg~ktktp   96 (139)
T KOG0407|consen   19 AHIFASFNDTFVHVTDLSGKETIVRVTGGMK-VKAD-RDESSPYAAMLAAQDVAAKCKELGITALHIKLRATGGTKTKTP   96 (139)
T ss_pred             EEEEeecccceEEEeccCCceEEEEecCCeE-Eecc-cccCChHHHHHHHHHHHHHHHhcCeeEEEEEEEecCCcccCCC
Confidence            4567777777788888777788876554322 2322 1234566788888999999999999999887653  221   1


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033657           96 HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        96 hGrV~a~~~~lre~Gl~~  113 (114)
                      .---++.+.+|-.+|+.+
T Consensus        97 gpgaqsalralar~gmri  114 (139)
T KOG0407|consen   97 GPGAQSALRALARSGMRI  114 (139)
T ss_pred             CccHHHHHHHHHHhccee
Confidence            223556667777777754

>smart00481 POLIIIAc DNA polymerase alpha chain like domain

Probab=82.11  E-value=4.6  Score=24.53  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             HHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033657           70 GKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL  114 (114)
Q Consensus        70 G~~la~R~~e~gI~~v~~d~r~~~~yhGrV~a~~~~lre~Gl~~~  114 (114)
                      -+.+.++|++.|++.+.+.+.+  .+.|- ..+.+..++.||++|
T Consensus        17 ~~~~~~~a~~~g~~~v~iTDh~--~~~~~-~~~~~~~~~~gi~~i   58 (67)
T smart00481       17 PEELVKRAKELGLKAIAITDHG--NLFGA-VEFYKAAKKAGIKPI   58 (67)
T ss_pred             HHHHHHHHHHcCCCEEEEeeCC--cccCH-HHHHHHHHHcCCeEE
Confidence            3467899999999999888754  23343 355677778888764

DNA polymerase alpha chain like domain, incl. family of hypothetical proteins

>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP

Probab=80.51  E-value=7.5  Score=29.23  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc
Q 033657           60 TRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREA  109 (114)
Q Consensus        60 ~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV~a~~~~lre~  109 (114)
                      .++.+||++.|+-+++-+....+.+.++-+ .++--.=-+..|+++++++
T Consensus        10 lGd~~a~r~mGerIGRaaQ~FEV~eLiiap-~~~vda~eL~~Fl~gV~~G   58 (173)
T PF14419_consen   10 LGDLKACRKMGERIGRAAQAFEVKELIIAP-KEKVDAYELMEFLRGVREG   58 (173)
T ss_pred             cCCHHHHHHHHHHHhHHHhhcchheEEEec-cCccCHHHHHHHHHHHHHh
Confidence            478999999999999999999999998875 2322222478899998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
1ovy_A	120	Solution Structure Of Ribosomal Protein L18 From Ba		5e-07

>pdb|1OVY|A Chain A, Solution Structure Of Ribosomal Protein L18 From Bacillus Stearothermophilus Length = 120

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 26  TNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
           +NK++ AQ+I              +K     +  T ++ AA K+G+++ +R L K I  V
Sbjct: 36  SNKHIYAQIIDDTKSATIVSASTLDKEF--GLDSTNNIEAAKKVGELVAKRALEKGIKQV 93
Query: 86  TVFLKREQRYHGKVKAVIDSLREAGVKL 113
            VF +    YHG+VKA+ D+ REAG++ 
Sbjct: 94  -VFDRGGYLYHGRVKALADAAREAGLEF 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	5e-18
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	9e-16
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	8e-15
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	8e-15
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	7e-14
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	1e-13

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O ... Length = 116

 Score = 72.2 bits (178), Expect = 5e-18
 Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T +++ AQVI    + V  +A++ EKA+   +  T +  AA+ +GK + ER L K
Sbjct: 25  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 84

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            I  V  F +   +YHG+V+A+ D+ REAG++
Sbjct: 85  GIKDV-SFDRSGFQYHGRVQALADAAREAGLQ 115

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Length = 120

 Score = 66.5 bits (163), Expect = 9e-16
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +  +NK++ AQ+I    +    SA++ +K           + AA K+G+++ +R L K
Sbjct: 31  LSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNN--IEAAKKVGELVAKRALEK 88

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            I  V VF +    YHG+VKA+ D+ REAG++
Sbjct: 89  GIKQV-VFDRGGYLYHGRVKALADAAREAGLE 119

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 161

 Score = 65.1 bits (159), Expect = 8e-15
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTR--DVAAASKIGKILGERLL 78
           L +  +NK++  QVI        +SA++ +K++   +  +    +  A K+G+++    L
Sbjct: 68  LCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACL 127

Query: 79  LKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            K I  V  F +    YHG+VKA+ D+ RE G++
Sbjct: 128 EKGITKV-AFDRGGYPYHGRVKALADAAREKGLQ 160

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Length = 112

 Score = 64.1 bits (157), Expect = 8e-15
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +  + K++ AQ+I         SA+S    L+ +         A ++G+ L E+ L  
Sbjct: 26  LSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKGN-----KTEVARQVGRALAEKALAL 80

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            I  V  F +   +YHG+VKA+ +  RE G++
Sbjct: 81  GIKQV-AFDRGPYKYHGRVKALAEGAREGGLE 111

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187

 Score = 63.3 bits (154), Expect = 7e-14
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 21  LRMHFTNKYVSAQVIHS--PTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLL 78
           L    +NK+V AQ++          +SA S + A       T ++ +A   G + G R  
Sbjct: 35  LVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQ 94

Query: 79  LKDIPAVTVFLK-REQRYHGKVKAVIDSLREAGVK 112
              +    + +         KV A+ +   +AG+ 
Sbjct: 95  EAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLD 129

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Length = 114

 Score = 61.1 bits (149), Expect = 1e-13
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L ++ ++K++ AQ+I        ++A+S      +          A+ +GK L      K
Sbjct: 29  LSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSGN------KTDTAAAVGKALAAAAAEK 82

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            I  V VF +   +YHG+VKA+ D+ RE G+ 
Sbjct: 83  GIKQV-VFDRGSYKYHGRVKALADAAREGGLD 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3r8s_O	116	50S ribosomal protein L18; protein biosynthesis, R	100.0
3bbo_Q	161	Ribosomal protein L18; large ribosomal subunit, sp	100.0
3v2d_S	112	50S ribosomal protein L18; ribosome associated inh	100.0
1ovy_A	120	50S ribosomal protein L18; ribosome; NMR {Geobacil	100.0
2zjr_L	114	50S ribosomal protein L18; ribosome, large ribosom	100.0
1vq8_N	187	50S ribosomal protein L18P; ribosome 50S, protein-	100.0
3j21_O	203	50S ribosomal protein L18P; archaea, archaeal, KIN	100.0
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	99.96
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	99.94
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	99.94
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	99.88
2xzm_K	151	RPS14E; ribosome, translation; 3.93A {Tetrahymena	98.06
2vqe_K	129	30S ribosomal protein S11, 30S ribosomal protein S	98.05
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	97.91
3j20_M	137	30S ribosomal protein S11P; archaea, archaeal, KIN	97.82
3bbn_K	140	Ribosomal protein S11; small ribosomal subunit, sp	97.78
3u5c_O	137	RP59A, 40S ribosomal protein S14-A; translation, r	97.28

>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...

Probab=100.00  E-value=2e-42  Score=242.30  Aligned_cols=97  Identities=35%  Similarity=0.466  Sum_probs=95.0

Q ss_pred             CCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033657           16 LKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRY   95 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~y   95 (114)
                      ..+|||+||+||+|||||||||++|+||+||||.||++++++.+++|++||+.||++||+||+++||++|+|| ||+|+|
T Consensus        20 ~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y   98 (116)
T 3r8s_O           20 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY   98 (116)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEE-CTTSCS
T ss_pred             CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCcc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999 799999


Q ss_pred             hhHHHHHHHHHHHcCccc
Q 033657           96 HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        96 hGrV~a~~~~lre~Gl~~  113 (114)
                      ||||+||+|++||+||+|
T Consensus        99 hGrV~Ala~~are~Gl~f  116 (116)
T 3r8s_O           99 HGRVQALADAAREAGLQF  116 (116)
T ss_dssp             SSHHHHHHHHHHHTTCCC
T ss_pred             cHHHHHHHHHHHHhCCCC
Confidence            999999999999999998

>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=7.5e-42  Score=250.54  Aligned_cols=102  Identities=26%  Similarity=0.394  Sum_probs=96.7

Q ss_pred             CccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccC--CCCCHHHHHHHHHHHHHHHhhCCCCEEEEe
Q 033657           11 KLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIG--CTRDVAAASKIGKILGERLLLKDIPAVTVF   88 (114)
Q Consensus        11 ~~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~--~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d   88 (114)
                      ++.++.++|||+||+||+|||||||||.+|+||+||||+||++++.++  +++|++||+.||++||+||+|+||++|+||
T Consensus        58 ki~gt~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFD  137 (161)
T 3bbo_Q           58 KVEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFD  137 (161)
T ss_dssp             GGGGSSSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCC
T ss_pred             hhccCCCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence            446677899999999999999999999999999999999999998776  689999999999999999999999999998


Q ss_pred             cCCCcchhhHHHHHHHHHHHcCccc
Q 033657           89 LKREQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        89 ~r~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                       ||+|+|||||+||+|++||+||+|
T Consensus       138 -Rgg~~YhGRVkAladaaRe~GL~F  161 (161)
T 3bbo_Q          138 -RGGYPYHGRVKALADAAREKGLQF  161 (161)
T ss_dssp             -CSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred             -CCCCcchHHHHHHHHHHHHhCCcC
Confidence             799999999999999999999997

>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...

Probab=100.00  E-value=1.2e-40  Score=232.07  Aligned_cols=95  Identities=26%  Similarity=0.367  Sum_probs=90.0

Q ss_pred             ccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC
Q 033657           12 LSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR   91 (114)
Q Consensus        12 ~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~   91 (114)
                      +.++. +|||+||+||+||||||+||++|+||+||||.||+++     ++|++||+.||++||+||+++||++|+|| ||
T Consensus        18 i~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~ra~~~GI~~vvfD-rg   90 (112)
T 3v2d_S           18 IKRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFD-RG   90 (112)
T ss_dssp             HHHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHHHHTTTCCBCEEE-CT
T ss_pred             hcCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cC
Confidence            34566 8999999999999999999999999999999999974     68999999999999999999999999999 79


Q ss_pred             CcchhhHHHHHHHHHHHcCccc
Q 033657           92 EQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        92 ~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      +|+|||||+||+|++||+||+|
T Consensus        91 g~~yhGrV~Ala~~are~GL~f  112 (112)
T 3v2d_S           91 PYKYHGRVKALAEGAREGGLEF  112 (112)
T ss_dssp             TSCSCSSTTHHHHHHHHTTCBC
T ss_pred             CCcccHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999998

>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1

Probab=100.00  E-value=8.3e-41  Score=235.31  Aligned_cols=100  Identities=31%  Similarity=0.450  Sum_probs=93.6

Q ss_pred             CccCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033657           11 KLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLK   90 (114)
Q Consensus        11 ~~~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r   90 (114)
                      ++.++..+|||+||+||+||||||+||++|+||+||||.||+++  +++++|++||+.||++||+||+++||++|+|| |
T Consensus        21 ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-r   97 (120)
T 1ovy_A           21 KIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-R   97 (120)
T ss_dssp             ---CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-S
T ss_pred             HhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-c
Confidence            45677889999999999999999999999999999999999987  67889999999999999999999999999998 7


Q ss_pred             CCcchhhHHHHHHHHHHHcCccc
Q 033657           91 REQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        91 ~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      |+|+|||||+||+|++||+||+|
T Consensus        98 gg~~yhgrV~ala~~are~GL~f  120 (120)
T 1ovy_A           98 GGYLYHGRVKALADAAREAGLEF  120 (120)
T ss_dssp             TTCSSCSSTHHHHHHHHHHHCCC
T ss_pred             CCccccHHHHHHHHHHHHhCCcC
Confidence            99999999999999999999997

>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P

Probab=100.00  E-value=4.8e-39  Score=224.59  Aligned_cols=96  Identities=27%  Similarity=0.366  Sum_probs=87.7

Q ss_pred             CccCC---CCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEE
Q 033657           11 KLSNF---LKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTV   87 (114)
Q Consensus        11 ~~~~~---~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~   87 (114)
                      |+.++   ..+|||+||+||+|||||||||++|+||+||||.|  +    ++++|++||+.||++||+||+++||++|+|
T Consensus        16 ki~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA~Ral~~GI~~vvf   89 (114)
T 2zjr_L           16 KVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALAAAAAEKGIKQVVF   89 (114)
T ss_dssp             HHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHHHHHHTTCCCCCEE
T ss_pred             hhccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            34567   88999999999999999999999999999999999  3    467899999999999999999999999999


Q ss_pred             ecCCCcchhhHHHHHHHHHHHcCccc
Q 033657           88 FLKREQRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        88 d~r~~~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      | ||+|+|||||+||+|++||+||+|
T Consensus        90 D-rgg~~yhgrV~Ala~~are~GL~f  114 (114)
T 2zjr_L           90 D-RGSYKYHGRVKALADAAREGGLDF  114 (114)
T ss_dssp             C-CCSSCSCSHHHHHHHHHHHHC---
T ss_pred             e-cCCccccHHHHHHHHHHHHhCCcC
Confidence            8 799999999999999999999987

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...

Probab=100.00  E-value=5e-35  Score=218.89  Aligned_cols=96  Identities=21%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             CCCcEEEEEEeCCceEEEEE--eCCCCeEEEEEechhHhhhccc-CCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033657           16 LKPYVLRMHFTNKYVSAQVI--HSPTATVASSATSQEKALRSSI-GCTRDVAAASKIGKILGERLLLKDIPAVTVFLKRE   92 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvi--d~~~~~~lasaST~e~~~k~~l-~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~   92 (114)
                      ..+|||+|++||+|||||||  ||++|+||+||||.||+ +..+ .+++|++||+.||++||+||+++||++|+|| ||+
T Consensus        30 ~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rgg  107 (187)
T 1vq8_N           30 SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-IGL  107 (187)
T ss_dssp             TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-CTT
T ss_pred             cCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEc-CCC
Confidence            56799999999999999999  99999999999999999 5444 6789999999999999999999999999998 799


Q ss_pred             cchh--hHHHHHHHHHHHcCccc
Q 033657           93 QRYH--GKVKAVIDSLREAGVKL  113 (114)
Q Consensus        93 ~~yh--GrV~a~~~~lre~Gl~~  113 (114)
                      ++||  |||+||+|++||+||+|
T Consensus       108 ~~yh~GgRV~Ala~gAre~GL~f  130 (187)
T 1vq8_N          108 NSPTPGSKVFAIQEGAIDAGLDI  130 (187)
T ss_dssp             SCCCTTCHHHHHHHHHHHTTCBC
T ss_pred             ceeccchHHHHHHHHhhcCCEec
Confidence            9999  99999999999999997

>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5.9e-34  Score=215.27  Aligned_cols=97  Identities=18%  Similarity=0.079  Sum_probs=90.8

Q ss_pred             CCCcEEEEEEeCCceEEEEEe--CCCCeEEEEEechhHhh-hcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033657           16 LKPYVLRMHFTNKYVSAQVIH--SPTATVASSATSQEKAL-RSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKRE   92 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvid--~~~~~~lasaST~e~~~-k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~   92 (114)
                      ..+|||+|++||+||||||+|  +++|+||+||||.||++ .+++.+++|++||+.||++||+||+++||++|+|| ||+
T Consensus        30 ~~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rgg  108 (203)
T 3j21_O           30 SGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILD-IGL  108 (203)
T ss_dssp             TCCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEE-CCS
T ss_pred             cCCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe-cCc
Confidence            457999999999999999998  78899999999999996 46667889999999999999999999999999998 799


Q ss_pred             cch--hhHHHHHHHHHHHcCccc
Q 033657           93 QRY--HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        93 ~~y--hGrV~a~~~~lre~Gl~~  113 (114)
                      ++|  ||||+||+|++||+||+|
T Consensus       109 ~~y~~hgRV~Ala~gAre~GL~i  131 (203)
T 3j21_O          109 HPPVRGSSVFAVLKGAVDAGLNV  131 (203)
T ss_dssp             SCCCTTSHHHHHHHHHHHHTCCC
T ss_pred             ceeccCcchhhhhhhcccCCeec
Confidence            999  899999999999999987

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.96  E-value=8.7e-29  Score=194.94  Aligned_cols=96  Identities=18%  Similarity=0.156  Sum_probs=89.1

Q ss_pred             CCcEEEEEEeCCceEEEEEeCC--CCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhC--------------
Q 033657           17 KPYVLRMHFTNKYVSAQVIHSP--TATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK--------------   80 (114)
Q Consensus        17 ~~~RL~V~~Snkhi~Aqvid~~--~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~--------------   80 (114)
                      .+|||+|++||+||||||||+.  +|+|||||||.|++-.++..+++|.+||+.+|.+||+||+++              
T Consensus        47 ~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~  126 (297)
T 2zkr_n           47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVT  126 (297)
T ss_dssp             CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSS
T ss_pred             CCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccc
Confidence            4699999999999999999977  999999999999994445557899999999999999999999              


Q ss_pred             -------------CCCEEEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033657           81 -------------DIPAVTVFLKREQRY--HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        81 -------------gI~~v~~d~r~~~~y--hGrV~a~~~~lre~Gl~~  113 (114)
                                   ||.+++|| +|+++|  ||||+|++++++|+||+|
T Consensus       127 g~~~~ve~~~~~~gi~~vvfD-rGl~ryttggRVfa~akGArDgGL~~  173 (297)
T 2zkr_n          127 GDEYNVESIDGQPGAFTCYLD-AGLARTTTGNKVFGALKGAVDGGLSI  173 (297)
T ss_dssp             SCCCCCSSSCSSSCCCBEEEE-CTTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred             cccccccccccCCCceEEEEe-cCCcccCCCchHHHHHHHHHhcCccc
Confidence                         99999999 799999  999999999999999987

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=99.94  E-value=2.4e-26  Score=181.23  Aligned_cols=96  Identities=26%  Similarity=0.261  Sum_probs=88.9

Q ss_pred             CCcEEEEEEeCCceEEEEEeC--CCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhC--------CCCE--
Q 033657           17 KPYVLRMHFTNKYVSAQVIHS--PTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK--------DIPA--   84 (114)
Q Consensus        17 ~~~RL~V~~Snkhi~Aqvid~--~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~--------gI~~--   84 (114)
                      .+|||+|++||+||||||||+  ++|+|||||||.|++.+++..+++|.+||+.||.+||+||+++        |+++  
T Consensus        47 ~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~  126 (297)
T 3u5e_D           47 PKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVE  126 (297)
T ss_dssp             CCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCC
T ss_pred             CCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccc
Confidence            689999999999999999998  6889999999999997776667889999999999999999999        9887  


Q ss_pred             -----------------EEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033657           85 -----------------VTVFLKREQRY--HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        85 -----------------v~~d~r~~~~y--hGrV~a~~~~lre~Gl~~  113 (114)
                                       ++|| .|..++  |+||++++++++++||++
T Consensus       127 g~~~~ve~~~~~~~~f~~~LD-vGl~rtttG~RVfaalKGA~DgGL~I  173 (297)
T 3u5e_D          127 GEYELTEAVEDGPRPFKVFLD-IGLQRTTTGARVFGALKGASDGGLYV  173 (297)
T ss_dssp             CCCCCCCCCSSSCCCCBCEEE-CTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred             cceeccccccCCCCceeEEEe-cCCCccCccceehhhhhcccccCccc
Confidence                             7898 698888  999999999999999975

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=99.94  E-value=2.8e-26  Score=181.00  Aligned_cols=97  Identities=23%  Similarity=0.188  Sum_probs=89.1

Q ss_pred             CCCcEEEEEEeCCceEEEEEeC--CCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhC--------CCC--
Q 033657           16 LKPYVLRMHFTNKYVSAQVIHS--PTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK--------DIP--   83 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvid~--~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~--------gI~--   83 (114)
                      ..+|||+|++||+|||||||||  ++|+|||||||.|++.+++..+++|.+||+.||.+||+||+++        |++  
T Consensus        46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~  125 (301)
T 4a17_M           46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKV  125 (301)
T ss_dssp             CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSC
T ss_pred             CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcccc
Confidence            3579999999999999999998  5789999999999998777678899999999999999999999        998  


Q ss_pred             -----------------EEEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033657           84 -----------------AVTVFLKREQRY--HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        84 -----------------~v~~d~r~~~~y--hGrV~a~~~~lre~Gl~~  113 (114)
                                       .++|| .|..++  |+||++++++++++||++
T Consensus       126 ~g~~~~ve~~~~~~~~f~~~LD-~Gl~rtt~G~RVfaalKGA~DgGL~I  173 (301)
T 4a17_M          126 DGAYFNVDEDQKEKKPFKAILD-AGLVRTTTGNRVFGVLKGACDGGINI  173 (301)
T ss_dssp             CCSCCCGGGTCCSSCCCBCEEE-CTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred             ccceeecccccCCCCceEEEEe-cCCcccCcccchhhhhhcccccCccc
Confidence                             57888 698888  999999999999999975

>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*

Probab=98.06  E-value=4.2e-05  Score=55.17  Aligned_cols=98  Identities=14%  Similarity=0.049  Sum_probs=72.2

Q ss_pred             cCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033657           13 SNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKRE   92 (114)
Q Consensus        13 ~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~   92 (114)
                      ++......+.|+-|-++...+|.|..+..++.++ |--...++. ...++--||...++.+|++|+|.||+.+.+..+|.
T Consensus        23 ~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~s-sgg~~~k~~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~  100 (151)
T 2xzm_K           23 ANENVFGVCHIMATWNDTFIHVTDLSGRETLVRV-TGGMKVKAD-REESSPYAAMQAAIDVVNRCKELKINALHIKLRAK  100 (151)
T ss_dssp             TTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEEC-CHHHHCSSG-GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred             CCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEe-cCcceEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcC
Confidence            5566678899999999999999997766677554 433333332 11456788999999999999999999988877642


Q ss_pred             --cc---h-hhHHHHHHHHHHHcCccc
Q 033657           93 --QR---Y-HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        93 --~~---y-hGrV~a~~~~lre~Gl~~  113 (114)
                        .+   . -| -++++.+|..+||++
T Consensus       101 gg~~~kgpG~G-resairaL~~~GlkI  126 (151)
T 2xzm_K          101 GGVETKQPGPG-AQSALRALARSGMKI  126 (151)
T ss_dssp             CTTSCCSCCSH-HHHHHHHHHHTSCEE
T ss_pred             CCCCccCCCcc-HHHHHHHHHHCCCEE
Confidence              11   1 23 478888888899875

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...

Probab=98.05  E-value=4.8e-05  Score=53.50  Aligned_cols=90  Identities=12%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             CcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhh
Q 033657           18 PYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHG   97 (114)
Q Consensus        18 ~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhG   97 (114)
                      ...+.|+-|.++...+|.| .+|.+++.+|+-...+++..  .+.--||...++.++++|+|.||+.+.+..+|.-  -|
T Consensus        16 ~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G--~G   90 (129)
T 2vqe_K           16 SGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG--AG   90 (129)
T ss_dssp             EEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCC--TT
T ss_pred             ceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC--CC
Confidence            4779999999999999998 55778878888777777653  4678899999999999999999999888776531  24


Q ss_pred             HHHHHHHHHHHcCccc
Q 033657           98 KVKAVIDSLREAGVKL  113 (114)
Q Consensus        98 rV~a~~~~lre~Gl~~  113 (114)
                      | ++++.+|...||++
T Consensus        91 r-e~airaL~~~Gl~I  105 (129)
T 2vqe_K           91 R-EQAIRALQASGLQV  105 (129)
T ss_dssp             H-HHHHHHHHTSSSEE
T ss_pred             H-HHHHHHHHHCCCEE
Confidence            4 57788998899875

>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=97.82  E-value=0.00027  Score=50.21  Aligned_cols=93  Identities=17%  Similarity=0.097  Sum_probs=70.5

Q ss_pred             CcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC--cc-
Q 033657           18 PYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKRE--QR-   94 (114)
Q Consensus        18 ~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~--~~-   94 (114)
                      ...+.|+-|-++...+|.|..+..+|+.+|.-...+++.  ..+.--||...++.++++|+|.||+.+.+..+|.  .+ 
T Consensus        14 ~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~   91 (137)
T 3j20_M           14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKS   91 (137)
T ss_dssp             EEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSSC
T ss_pred             ceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCCC
Confidence            346789999999999999966557998887776655542  2356779999999999999999999988877661  11 


Q ss_pred             --h-hhHHHHHHHHHHHcCccc
Q 033657           95 --Y-HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        95 --y-hGrV~a~~~~lre~Gl~~  113 (114)
                        . -| -++++.+|...||++
T Consensus        92 ~~pG~G-resairaL~~~Gl~I  112 (137)
T 3j20_M           92 KTPGPG-AQAAIRALARAGLKI  112 (137)
T ss_dssp             CSCCTH-HHHHHHHHHHHTCEE
T ss_pred             cCCCCc-HHHHHHHHHhCCCEE
Confidence              1 34 455677888889875

>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=97.78  E-value=5e-05  Score=54.16  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             CcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhh
Q 033657           18 PYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHG   97 (114)
Q Consensus        18 ~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhG   97 (114)
                      ...+.|+-|.++...+|.| .+|.+++.+|+-...+++..  .+.--||...++.++++|+|.||+.+.+..+|.-  -|
T Consensus        29 ~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G--~G  103 (140)
T 3bbn_K           29 KGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPG--LG  103 (140)
T ss_dssp             CCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCS--TT
T ss_pred             eeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC--Cc
Confidence            4789999999999999998 56778878888777777653  5678899999999999999999999888776521  24


Q ss_pred             HHHHHHHHHHHcCccc
Q 033657           98 KVKAVIDSLREAGVKL  113 (114)
Q Consensus        98 rV~a~~~~lre~Gl~~  113 (114)
                      | ++++.+|...||++
T Consensus       104 R-eaairaL~~~Gl~I  118 (140)
T 3bbn_K          104 R-DAALRAIRRSGILL  118 (140)
T ss_dssp             S-SHHHHHHHTTTCEE
T ss_pred             H-HHHHHHHHHCCCEE
Confidence            4 46788888889875

>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*

Probab=97.28  E-value=0.00049  Score=48.82  Aligned_cols=98  Identities=15%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             cCCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC-
Q 033657           13 SNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR-   91 (114)
Q Consensus        13 ~~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~-   91 (114)
                      ++....-.+.|+-|-++...+|.|.. |.++...|+-...+|+.. ..+.--||...++.++++|+|.||+.+.+..|+ 
T Consensus         9 ~~~~~~gi~hI~asfNNTivtvTD~~-G~~~~~~ssG~~gfKg~r-~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~   86 (137)
T 3u5c_O            9 DNSQVFGVARIYASFNDTFVHVTDLS-GKETIARVTGGMKVKADR-DESSPYAAMLAAQDVAAKCKEVGITAVHVKIRAT   86 (137)
T ss_dssp             --CCCEEECCEEEETTEEEECCEETT-SSSCCCCCBTTTTSCCST-TTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECS
T ss_pred             cCceeeEEEEEEccCCCEEEEEEcCC-CCEEEEEeCCCcEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence            33444456779999999999999955 444445566555665521 135677999999999999999999998877652 


Q ss_pred             -Ccch----hhHHHHHHHHHHHcCccc
Q 033657           92 -EQRY----HGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        92 -~~~y----hGrV~a~~~~lre~Gl~~  113 (114)
                       |.+.    -| -++++.+|..+||++
T Consensus        87 gg~~~kgpG~G-r~sairaL~~~Gl~I  112 (137)
T 3u5c_O           87 GGTRTKTPGPG-GQAALRALARSGLRI  112 (137)
T ss_dssp             CTTSCCSCCGG-GHHHHHHHHTTTCEE
T ss_pred             CCCcccCCCcc-hHHHHHHHHhCCCEE
Confidence             2211    23 456677888889876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1ovya_	97	c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill	1e-20
d2gycm1	113	c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E	4e-19
d2j01s1	86	c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {	4e-18
d2zjrl1	104	c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {D	7e-14
d1vqon1	186	c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A	1e-13

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.2 bits (190), Expect = 1e-20
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +  +NK++ AQ+I    +    SA++ +K        T ++ AA K+G+++ +R L K
Sbjct: 8   LSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLD--STNNIEAAKKVGELVAKRALEK 65

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
            I  V VF +    YHG+VKA+ D+ REAG++
Sbjct: 66  GIKQV-VFDRGGYLYHGRVKALADAAREAGLE 96

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

 Score = 73.8 bits (181), Expect = 4e-19
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L +H T +++ AQVI    + V  +A++ EKA+   +  T +  AA+ +GK + ER L K
Sbjct: 24  LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 83

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAGV 111
            I  V  F +   +YHG+V+A+ D+ REAG+
Sbjct: 84  GIKDV-SFDRSGFQYHGRVQALADAAREAGL 113

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

 Score = 70.5 bits (173), Expect = 4e-18
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 19  YVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLL 78
             L +  + K++ AQ+I         SA+S    L+           A ++G+ L E+ L
Sbjct: 2   LRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG-----NKTEVARQVGRALAEKAL 56

Query: 79  LKDIPAVTVFLKREQRYHGKVKAVIDSLRE 108
              I  V  F +   +YHG+VKA+ +  RE
Sbjct: 57  ALGIKQV-AFDRGPYKYHGRVKALAEGARE 85

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 60.3 bits (146), Expect = 7e-14
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 21  LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
           L ++ ++K++ AQ+I        ++A+S        +        A+ +GK L      K
Sbjct: 22  LSVYRSSKHIYAQIIDDSRGQTLAAASSAA------LKSGNKTDTAAAVGKALAAAAAEK 75

Query: 81  DIPAVTVFLKREQRYHGKVKAVIDSLREAG 110
            I  V VF +   +YHG+VKA+ D+ RE G
Sbjct: 76  GIKQV-VFDRGSYKYHGRVKALADAAREGG 104

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 61.5 bits (149), Expect = 1e-13
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 19  YVLRMHFTNKYVSAQVIHSPTA--TVASSATSQEKALRSSIGCTRDVAAASKIGKILGER 76
             L    +NK+V AQ++          +SA S + A       T ++ +A   G + G R
Sbjct: 32  PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLR 91

Query: 77  LLLKDIPAVTVFLKREQ-RYHGKVKAVIDSLREAGVKL 113
                +    + +         KV A+ +   +AG+ +
Sbjct: 92  AQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDI 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2gycm1	113	Ribosomal protein L18 (L18p) {Escherichia coli [Ta	100.0
d1ovya_	97	Ribosomal protein L18 (L18p) {Bacillus stearotherm	100.0
d2j01s1	86	Ribosomal protein L18 (L18p) {Thermus thermophilus	100.0
d2zjrl1	104	Ribosomal protein L18 (L18p) {Deinococcus radiodur	100.0
d1vqon1	186	Ribosomal protein L18 (L18p) {Archaeon Haloarcula	99.98
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	98.09
d2qalk1	117	Ribosomal protein S11 {Escherichia coli [TaxId: 56	97.87
d1p5dx1	146	Phosphomannomutase/phosphoglucomutase {Pseudomonas	92.23

>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-41  Score=231.65  Aligned_cols=95  Identities=36%  Similarity=0.463  Sum_probs=91.9

Q ss_pred             CCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033657           16 LKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRY   95 (114)
Q Consensus        16 ~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~y   95 (114)
                      ..+|||+||+||+|||||||||.+++||+||||+|++++.+++.++|++||+.||++||++|+++||++|+|| |+||+|
T Consensus        19 ~~~pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~vvfD-R~g~~Y   97 (113)
T d2gycm1          19 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY   97 (113)
T ss_dssp             TTCCCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCCCCB-CCSCCS
T ss_pred             CCCCeEEEEEeCCcEEEEEEEccCCcEEEEeeehhhhhhhhcCCCcchHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCcc
Confidence            3469999999999999999999999999999999999999999999999999999999999999999999998 899999


Q ss_pred             hhHHHHHHHHHHHcCc
Q 033657           96 HGKVKAVIDSLREAGV  111 (114)
Q Consensus        96 hGrV~a~~~~lre~Gl  111 (114)
                      ||||+||+|++||+||
T Consensus        98 hGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          98 HGRVQALADAAREAGL  113 (113)
T ss_dssp             SSHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHcCC
Confidence            9999999999999997

>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.8e-40  Score=224.37  Aligned_cols=97  Identities=31%  Similarity=0.436  Sum_probs=91.7

Q ss_pred             CCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033657           14 NFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQ   93 (114)
Q Consensus        14 ~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~   93 (114)
                      ++..+|||+|++||+|||||||||.+++||+++||++++++.  ...+|+++|+.||++||+||+++||++++|| ||+|
T Consensus         1 gt~~rpRL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~--~~~~n~~aA~~vG~~~a~kak~~gi~~vvfD-r~g~   77 (97)
T d1ovya_           1 GTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGL--DSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RGGY   77 (97)
T ss_dssp             CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCS--SCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-STTC
T ss_pred             CCCCCCEEEEEEeCCeEEEEEEEcCCCeEEEEecchhhhhcc--cccCcHHHHHHHHHHHHHHHHHcCCCEEEEc-CCCC
Confidence            567899999999999999999999999999999999999865  3457999999999999999999999999998 7999


Q ss_pred             chhhHHHHHHHHHHHcCccc
Q 033657           94 RYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        94 ~yhGrV~a~~~~lre~Gl~~  113 (114)
                      +|||||+||+|++||+||+|
T Consensus        78 ~yhGrvka~a~~~R~~Gl~F   97 (97)
T d1ovya_          78 LYHGRVKALADAAREAGLEF   97 (97)
T ss_dssp             SSCSSTHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998

>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-38  Score=209.61  Aligned_cols=86  Identities=28%  Similarity=0.380  Sum_probs=81.7

Q ss_pred             CcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhh
Q 033657           18 PYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHG   97 (114)
Q Consensus        18 ~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhG   97 (114)
                      +|||+||+||+|||||||||.+++||+|+||.++++++     +|+++|..||++||++|+++||++|+|| ||||+|||
T Consensus         1 R~RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~-----~~~~~A~~vG~~la~~ak~~gI~~v~FD-R~g~~YHG   74 (86)
T d2j01s1           1 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG-----NKTEVARQVGRALAEKALALGIKQVAFD-RGPYKYHG   74 (86)
T ss_dssp             SCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS-----CHHHHHHHHHHHHHHHHHHTSCCCCBCC-CSTTCSSS
T ss_pred             CcEEEEEEcCCeEEEEEEEcCCCeEEEEEeccchhhcC-----CCHHHHHHHHHHHHHHHHHCCCCEEEEe-CCCCcccc
Confidence            58999999999999999999999999999999998753     6899999999999999999999999998 89999999


Q ss_pred             HHHHHHHHHHHc
Q 033657           98 KVKAVIDSLREA  109 (114)
Q Consensus        98 rV~a~~~~lre~  109 (114)
                      ||+||+|++||+
T Consensus        75 rvka~Ad~~Reg   86 (86)
T d2j01s1          75 RVKALAEGAREG   86 (86)
T ss_dssp             SCCCCSSCTTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999985

>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=4.1e-37  Score=210.16  Aligned_cols=90  Identities=27%  Similarity=0.333  Sum_probs=83.5

Q ss_pred             CCCCCcEEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc
Q 033657           14 NFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQ   93 (114)
Q Consensus        14 ~~~~~~RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~   93 (114)
                      +...+|||+||+||+|||||||||++++||+|+||.+++      ..+|+++|..+|++||++++++||++|+|| ||||
T Consensus        15 ~~~~rpRL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~------~~~~~~~a~~vG~~ia~~a~~kgi~~v~FD-R~g~   87 (104)
T d2zjrl1          15 AASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALK------SGNKTDTAAAVGKALAAAAAEKGIKQVVFD-RGSY   87 (104)
T ss_dssp             TTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCSCC------TTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-CCSS
T ss_pred             ccCCCcEEEEEEccCeeEEEEEecCCCeEEEeecccccc------ccchhhHHHHHHHHHHHHHHHCCCCEEEEC-CCCC
Confidence            445679999999999999999999999999999998764      346889999999999999999999999998 8999


Q ss_pred             chhhHHHHHHHHHHHcC
Q 033657           94 RYHGKVKAVIDSLREAG  110 (114)
Q Consensus        94 ~yhGrV~a~~~~lre~G  110 (114)
                      +|||||+||||++||+|
T Consensus        88 ~YHGrvka~ad~~R~~G  104 (104)
T d2zjrl1          88 KYHGRVKALADAAREGG  104 (104)
T ss_dssp             CSCSHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHHHHhCC
Confidence            99999999999999998

>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.98  E-value=1.5e-32  Score=203.60  Aligned_cols=96  Identities=21%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             CCcEEEEEEeCCceEEEEE--eCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC--C
Q 033657           17 KPYVLRMHFTNKYVSAQVI--HSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKR--E   92 (114)
Q Consensus        17 ~~~RL~V~~Snkhi~Aqvi--d~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~--~   92 (114)
                      .+|||+|++||+||||||+  |+.+++|||||||.|+..+++..+++|++||+.+|.++|+||+++||++++|| +|  +
T Consensus        30 ~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvfD-~G~~~  108 (186)
T d1vqon1          30 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-IGLNS  108 (186)
T ss_dssp             CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-CTTSC
T ss_pred             CCCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhccccCccHHHHHHHhHHHHHHHHHhhcccceEEe-eCCCC
Confidence            4799999999999999999  57799999999999999999999999999999999999999999999999999 57  9


Q ss_pred             cchhhHHHHHHHHHHHcCccc
Q 033657           93 QRYHGKVKAVIDSLREAGVKL  113 (114)
Q Consensus        93 ~~yhGrV~a~~~~lre~Gl~~  113 (114)
                      ++|||||+|+++++||+||++
T Consensus       109 ~~yhgRV~A~akgard~GL~I  129 (186)
T d1vqon1         109 PTPGSKVFAIQEGAIDAGLDI  129 (186)
T ss_dssp             CCTTCHHHHHHHHHHHTTCBC
T ss_pred             CCccchHHHHHHHHHhcCccC
Confidence            999999999999999999985

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=1.3e-05  Score=53.80  Aligned_cols=88  Identities=11%  Similarity=0.151  Sum_probs=69.8

Q ss_pred             EEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033657           20 VLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKV   99 (114)
Q Consensus        20 RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV   99 (114)
                      .+.|+-|.++...++.|.. |+++..+|+-...+++..  ..+..||+.+++.+++++++.|++.+.+..+|- - -|| 
T Consensus         8 ivhI~~t~NNT~itlTD~~-Gn~i~~~S~G~~gfkg~r--k~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~-G-~gR-   81 (119)
T d2uubk1           8 RAYIHASYNNTIVTITDPD-GNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT-G-AGR-   81 (119)
T ss_dssp             EEEEEECSSCEEEEEECTT-SCEEEEEETTTSSCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECC-C-TTH-
T ss_pred             EEEEEeccCCEEEEEECCC-CCEEEEEecccceecccc--ccchhHHHHHHHHHHHHHHHcCCcEEEEEEEcC-C-CCh-
Confidence            5789999999999999854 678888888766666532  457789999999999999999999987776652 1 344 


Q ss_pred             HHHHHHHHHcCccc
Q 033657          100 KAVIDSLREAGVKL  113 (114)
Q Consensus       100 ~a~~~~lre~Gl~~  113 (114)
                      ++++.+|...||++
T Consensus        82 ~~~ik~l~~~g~kI   95 (119)
T d2uubk1          82 EQAIRALQASGLQV   95 (119)
T ss_dssp             HHHHHHHHTSSSEE
T ss_pred             HHHHHHHHHCCCEE
Confidence            57778888899876

>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.2e-05  Score=52.57  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=69.3

Q ss_pred             EEEEEEeCCceEEEEEeCCCCeEEEEEechhHhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033657           20 VLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKV   99 (114)
Q Consensus        20 RL~V~~Snkhi~Aqvid~~~~~~lasaST~e~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhGrV   99 (114)
                      .+.|+-|.++...++.| .+|.+++..|+-...+++..  .+.-.||..+++.++++|++.|++.+.+..+|- - -|| 
T Consensus         8 i~hI~~t~NNTiitlTD-~~G~~~~~~S~G~~gfkg~~--K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~-G-~GR-   81 (117)
T d2qalk1           8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEYGIKNLEVMVKGP-G-PGR-   81 (117)
T ss_dssp             EEEEECCSSCCEEEEEE-TTSCEEEEEETTTSSCCHHH--HTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECC-S-TTT-
T ss_pred             EEEEEecCCCEEEEEEC-CCCCEEEEEecccccccccc--ccchHHHHHHHHHHHHHHHHcCCcEEEEEEeCC-C-Cch-
Confidence            47789999999999998 56777878787766666543  346789999999999999999999988877652 1 244 


Q ss_pred             HHHHHHHHHcCccc
Q 033657          100 KAVIDSLREAGVKL  113 (114)
Q Consensus       100 ~a~~~~lre~Gl~~  113 (114)
                      ++++.+++.+||++
T Consensus        82 ~~air~l~~~gl~I   95 (117)
T d2qalk1          82 ESTIRALNAAGFRI   95 (117)
T ss_dssp             THHHHHHHHTTCEE
T ss_pred             HHHHHHHHhCCCEE
Confidence            46788899999875

>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.23  E-value=0.19  Score=33.30  Aligned_cols=62  Identities=29%  Similarity=0.418  Sum_probs=46.4

Q ss_pred             HhhhcccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhh--HHHHHHHHHHHcCcccC
Q 033657           51 KALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHG--KVKAVIDSLREAGVKLL  114 (114)
Q Consensus        51 ~~~k~~l~~~~n~~Aa~~vG~~la~R~~e~gI~~v~~d~r~~~~yhG--rV~a~~~~lre~Gl~~~  114 (114)
                      .++|+..+..-|-+-++.+|+-+|...++.|...|++=.  ..+..|  -..+++++|.++|++++
T Consensus         9 ~dIRGi~~~~lt~~~~~~ig~a~~~~~~~~~~~~VvIg~--D~R~ss~~~~~~~~~gl~~~G~~V~   72 (146)
T d1p5dx1           9 YDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGR--DGRLSGPELVKQLIQGLVDCGCQVS   72 (146)
T ss_dssp             SSEEEEBTTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEE--CSCTTHHHHHHHHHHHHHTBTCEEE
T ss_pred             cCEeeeCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEEE--CCccchhhhhhhhheeeccCceEEE
Confidence            345665555668899999999999999998888876642  223333  46789999999998763