Citrus Sinensis ID: 033672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNfglryddlydpyydlDIKEALDRLPREIVDARNQRLKRAMDlsmkheylpeDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Flexible Loop (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Low Complexity Region (SEG)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRyddlydpyydldIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Disordered region (IsUnstruct)
************KNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDL**
Disordered Region (DISOPRED)
******SLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Disordered Region (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Disordered Region (DISPRO)
*ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCK*LGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q9SUU5	122	Cytochrome b-c1 complex s	no	no	0.771	0.721	0.75	6e-34
F4JWS8	122	Cytochrome b-c1 complex s	no	no	0.771	0.721	0.761	9e-34
P48502	123	Cytochrome b-c1 complex s	N/A	no	0.973	0.902	0.625	2e-32
Q5RC24	111	Cytochrome b-c1 complex s	yes	no	0.429	0.441	0.490	0.0001
P14927	111	Cytochrome b-c1 complex s	yes	no	0.429	0.441	0.470	0.0003
Q9D855	111	Cytochrome b-c1 complex s	yes	no	0.324	0.333	0.513	0.0003

>sp|Q9SUU5|QCR71_ARATH Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana GN=QCR7-1 PE=1 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 78/88 (88%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MASLL++ +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1  MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          ARNQRLKRAMDLSMKHEYLP+DLQ + +
Sbjct: 61 ARNQRLKRAMDLSMKHEYLPKDLQAVQT 88

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.
Arabidopsis thaliana (taxid: 3702)

>sp|F4JWS8|QCR72_ARATH Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana GN=QCR7-2 PE=1 SV=1

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 78/88 (88%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1  MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          ARNQRL RAMDLSMKHEYLP++LQ + +
Sbjct: 61 ARNQRLMRAMDLSMKHEYLPDNLQAVQT 88

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Arabidopsis thaliana (taxid: 3702)

>sp|P48502|QCR7_SOLTU Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 2   ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
           +S  + L+DPKKN LAA HMKT+S RLRN+GLR+DDLYDP YDLD+KEAL+RLPREIVDA
Sbjct: 3   SSFSRWLVDPKKNPLAAIHMKTLSSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDA 62

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKDLG 113
           RNQRL RAMDLSMKH+YLPEDLQ + +   R   +  + ++K+     + LG
Sbjct: 63  RNQRLLRAMDLSMKHQYLPEDLQAMQT-PFRNYLQEMLALVKRESAEREALG 113

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Solanum tuberosum (taxid: 4113)

>sp|Q5RC24|QCR7_PONAB Cytochrome b-c1 complex subunit 7 OS=Pongo abelii GN=UQCRB PE=3 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 32 GLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
          GL  DD    Y D D+KEA+ RLP  + + R  R+KRA+DLS+KH+ LP++
Sbjct: 31 GLMRDDTI--YEDEDVKEAIRRLPENLYNDRMFRIKRALDLSLKHQILPKE 79

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Pongo abelii (taxid: 9601)

>sp|P14927|QCR7_HUMAN Cytochrome b-c1 complex subunit 7 OS=Homo sapiens GN=UQCRB PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 32 GLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
          GL  DD    Y D D+KEA+ RLP  + + R  R+KRA+DL++KH+ LP++
Sbjct: 31 GLMRDDTI--YEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKE 79

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Homo sapiens (taxid: 9606)

>sp|Q9D855|QCR7_MOUSE Cytochrome b-c1 complex subunit 7 OS=Mus musculus GN=Uqcrb PE=1 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 30/37 (81%)

Query: 46 DIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
          D+KEA+ RLP ++ + R  R+KRA+DL+M+H+ LP+D
Sbjct: 43 DVKEAIRRLPEDLYNDRMLRIKRALDLTMRHQILPKD 79

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
224089146	122	predicted protein [Populus trichocarpa]	0.912	0.852	0.730	2e-37
224141859	118	predicted protein [Populus trichocarpa]	0.771	0.745	0.840	2e-37
118481517	122	unknown [Populus trichocarpa]	0.912	0.852	0.721	5e-37
224165641	84	predicted protein [Populus trichocarpa]	0.736	1.0	0.869	2e-36
324331821	123	ubiquinol-cytochrome C reductase complex	0.763	0.707	0.793	1e-34
297808563	122	predicted protein [Arabidopsis lyrata su	0.771	0.721	0.772	4e-33
225430198	122	PREDICTED: cytochrome b-c1 complex subun	0.771	0.721	0.784	6e-33
297798716	122	hypothetical protein ARALYDRAFT_913201 [	0.771	0.721	0.761	1e-32
338173927	122	ubiquinol-cytochrome C reductase complex	0.771	0.721	0.772	1e-32
334187934	106	ubiquinol-cytochrome c reductase subunit	0.745	0.801	0.8	2e-32

>gi|224089146|ref|XP_002308646.1| predicted protein [Populus trichocarpa] gi|222854622|gb|EEE92169.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 87/104 (83%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQSL+DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1   MASFLQSLIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQ 104
           ARNQRLKRAMDLSMKH+YLPEDLQ + +       E   FV ++
Sbjct: 61  ARNQRLKRAMDLSMKHDYLPEDLQAMQTPFRSYLQEMLAFVKRE 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141859|ref|XP_002324279.1| predicted protein [Populus trichocarpa] gi|222865713|gb|EEF02844.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/88 (84%), Positives = 82/88 (93%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MAS LQSL+DP+KNWLA QHMKT+S RLR +GLRYDDLYDPYY+LDIKEAL+RLPREIVD
Sbjct: 1  MASFLQSLVDPRKNWLAKQHMKTLSSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          ARNQRLKRAMDLSMKHEYLPEDLQ + +
Sbjct: 61 ARNQRLKRAMDLSMKHEYLPEDLQAMQT 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481517|gb|ABK92701.1| unknown [Populus trichocarpa]

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 85/104 (81%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQS +DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1   MASFLQSFIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQVLVSFILRKCTEASIFVIKQ 104
           ARNQRLKRAMDLSMKH YLPEDLQ + +       E   FV ++
Sbjct: 61  ARNQRLKRAMDLSMKHAYLPEDLQAMQTPFRSYLQEMLAFVKRE 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224165641|ref|XP_002338838.1| predicted protein [Populus trichocarpa] gi|222873587|gb|EEF10718.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 80/84 (95%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MAS LQSL+DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1  MASFLQSLIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQ 84
          ARNQRLKRAMDLSMKH+YLPEDLQ
Sbjct: 61 ARNQRLKRAMDLSMKHDYLPEDLQ 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331821|gb|ADY38691.1| ubiquinol-cytochrome C reductase complex [Camellia sinensis]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 81/87 (93%)

Query: 2  ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
          +SL++ L+DPKKNW AAQHMK+ISKRLR +GLRYDDL+DPYYDLD+KEAL+RLPREIVDA
Sbjct: 3  SSLMKWLVDPKKNWFAAQHMKSISKRLRRYGLRYDDLFDPYYDLDVKEALNRLPREIVDA 62

Query: 62 RNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          RNQRLKRAMDLSMKH+YLPE LQ + +
Sbjct: 63 RNQRLKRAMDLSMKHDYLPEHLQAMQT 89

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808563|ref|XP_002872165.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318002|gb|EFH48424.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 79/88 (89%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1  MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          ARNQRLKRAMDLSMKHEYLP++LQ + +
Sbjct: 61 ARNQRLKRAMDLSMKHEYLPDNLQAMQT 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430198|ref|XP_002284960.1| PREDICTED: cytochrome b-c1 complex subunit 7 [Vitis vinifera] gi|296081993|emb|CBI20998.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 78/88 (88%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          M SL++ L+DPKKNW A QHMKTIS RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1  MESLMKWLVDPKKNWFARQHMKTISTRLRKYGLRYDDLYDPKYDLDIKEALNRLPREIVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          AR+QRLKRA+DLSMKHEYL EDLQ + +
Sbjct: 61 ARHQRLKRAIDLSMKHEYLAEDLQAMQT 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798716|ref|XP_002867242.1| hypothetical protein ARALYDRAFT_913201 [Arabidopsis lyrata subsp. lyrata] gi|297313078|gb|EFH43501.1| hypothetical protein ARALYDRAFT_913201 [Arabidopsis lyrata subsp. lyrata]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 78/88 (88%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MASLL+S +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1  MASLLKSFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          ARNQRLKRAMDLSMKHEYLP+DLQ + +
Sbjct: 61 ARNQRLKRAMDLSMKHEYLPKDLQAVQT 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338173927|gb|AEI83504.1| ubiquinol-cytochrome C reductase complex 14kD subunit [Wolffia arrhiza]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 77/88 (87%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MA  ++ L+DP +NWLAAQH K IS+RLR +GLRYDDLYDP +DLDIKEAL RLPREIVD
Sbjct: 1  MAGFMRWLVDPSRNWLAAQHCKAISRRLRKYGLRYDDLYDPLHDLDIKEALARLPREIVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQVLVS 88
          ARNQRLKRAMDLSMKH+YLPEDLQ L +
Sbjct: 61 ARNQRLKRAMDLSMKHDYLPEDLQALQT 88

Source: Wolffia arrhiza

Species: Wolffia arrhiza

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187934|ref|NP_001190394.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana] gi|332006062|gb|AED93445.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 77/85 (90%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
          MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1  MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQV 85
          ARNQRL RAMDLSMKHEYLP++LQV
Sbjct: 61 ARNQRLMRAMDLSMKHEYLPDNLQV 85

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2127846	122	AT4G32470 [Arabidopsis thalian	0.754	0.704	0.662	2.2e-25
TAIR|locus:2145527	122	AT5G25450 [Arabidopsis thalian	0.754	0.704	0.651	2.6e-24
ZFIN|ZDB-GENE-050522-542	111	uqcrb "ubiquinol-cytochrome c	0.315	0.324	0.611	1.6e-06
UNIPROTKB|F1P3M8	108	UQCRB "Cytochrome b-c1 complex	0.315	0.333	0.527	4.3e-06
MGI|MGI:1914780	111	Uqcrb "ubiquinol-cytochrome c	0.315	0.324	0.5	7e-06
RGD|1311971	111	Uqcrb "ubiquinol-cytochrome c	0.315	0.324	0.527	7e-06
UNIPROTKB|F1PLP2	106	UQCRB "Cytochrome b-c1 complex	0.315	0.339	0.472	3.9e-05
UNIPROTKB|B7Z2R2	161	UQCRB "cDNA FLJ52271, moderate	0.315	0.223	0.472	3.9e-05
UNIPROTKB|E5RHG9	76	UQCRB "Cytochrome b-c1 complex	0.315	0.473	0.472	3.9e-05
UNIPROTKB|P14927	111	UQCRB "Cytochrome b-c1 complex	0.315	0.324	0.472	3.9e-05

TAIR|locus:2127846 AT4G32470 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 57/86 (66%), Positives = 67/86 (77%)

Query:     1 MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVD 60
             MASLL++ +DPKKN+LA  HMK IS RLR +GLR            IKEA++RLPRE+VD
Sbjct:     1 MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query:    61 ARNQRLKRAMDLSMKHEYLPEDLQVL 86
             ARNQRLKRAMDLSMKHEYLP+DLQ +
Sbjct:    61 ARNQRLKRAMDLSMKHEYLPKDLQAV 86

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA;ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2145527 AT5G25450 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 56/86 (65%), Positives = 66/86 (76%)

Query:     1 MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVD 60
             MAS LQ L+DP+KN+LA  HMK++S RLR +GLR            IKEAL+RLPREIVD
Sbjct:     1 MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query:    61 ARNQRLKRAMDLSMKHEYLPEDLQVL 86
             ARNQRL RAMDLSMKHEYLP++LQ +
Sbjct:    61 ARNQRLMRAMDLSMKHEYLPDNLQAV 86

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA;ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

ZFIN|ZDB-GENE-050522-542 uqcrb "ubiquinol-cytochrome c reductase binding protein" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/36 (61%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  RLKRAMDLSMKH+ LP+D
Sbjct:    44 VKEAVRRLPEPLYNERVFRLKRAMDLSMKHQILPKD 79

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1P3M8 UQCRB "Cytochrome b-c1 complex subunit 7" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 19/36 (52%), Positives = 29/36 (80%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEAL RLP+++ + R  R+KRA+DLS+KH  LP++
Sbjct:    41 VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKE 76

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

MGI|MGI:1914780 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Mus musculus (taxid:10090)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 18/36 (50%), Positives = 29/36 (80%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP ++ + R  R+KRA+DL+M+H+ LP+D
Sbjct:    44 VKEAIRRLPEDLYNDRMLRIKRALDLTMRHQILPKD 79

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISO

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

RGD|1311971 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  R+KRA+DLSM+H+ LP+D
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLSMRHQILPKD 79

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|F1PLP2 UQCRB "Cytochrome b-c1 complex subunit 7" [Canis lupus familiaris (taxid:9615)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 17/36 (47%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  R+KRA+DL+M+H+ LP++
Sbjct:    39 VKEAIRRLPENLYNDRMFRIKRALDLTMRHQILPKE 74

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|B7Z2R2 UQCRB "cDNA FLJ52271, moderately similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein (EC 1.10.2.2)" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 17/36 (47%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  R+KRA+DL++KH+ LP++
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKE 79

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

UNIPROTKB|E5RHG9 UQCRB "Cytochrome b-c1 complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 17/36 (47%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  R+KRA+DL++KH+ LP++
Sbjct:    12 VKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKE 47

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

UNIPROTKB|P14927 UQCRB "Cytochrome b-c1 complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 17/36 (47%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  R+KRA+DL++KH+ LP++
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKE 79

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48502	QCR7_SOLTU	No assigned EC number	0.625	0.9736	0.9024	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam02271	105	pfam02271, UCR_14kD, Ubiquinol-cytochrome C reduct	3e-19

>gnl|CDD|202184 pfam02271, UCR_14kD, Ubiquinol-cytochrome C reductase complex 14kD subunit

 Score = 75.8 bits (187), Expect = 3e-19
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 5  LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQ 64
          L  LL P   W    +        R  GLRYDDL     + D++EAL RLPRE   AR  
Sbjct: 7  LSKLLKPLAKW----YFNA--SGYRQLGLRYDDLIPEE-NPDVQEALRRLPREESYARVF 59

Query: 65 RLKRAMDLSMKHEYLPED 82
          R+KRAM LS+ H+ LP++
Sbjct: 60 RIKRAMQLSLSHQLLPKE 77

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PF02271	105	UCR_14kD: Ubiquinol-cytochrome C reductase complex	100.0
KOG3440	122	consensus Ubiquinol cytochrome c reductase, subuni	100.0

>PF02271 UCR_14kD: Ubiquinol-cytochrome C reductase complex 14kD subunit; InterPro: IPR003197 The cytochrome bd type terminal oxidases catalyse quinol dependent, Na+ independent oxygen uptake []

Probab=100.00  E-value=9.5e-40  Score=234.27  Aligned_cols=91  Identities=37%  Similarity=0.637  Sum_probs=75.3

Q ss_pred             hHHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCc
Q 033672            2 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPE   81 (114)
Q Consensus         2 ~~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPk   81 (114)
                      +++|+++++|+++||.|      ++||||+||+||||++| +||+|+|||+|||+++.++|+|||+||+|||++|++||+
T Consensus         4 ~p~~~~~~~~~~~w~~n------~~gyrk~GL~~DDl~~e-~~~~v~eAl~RLp~~~~~~R~~Ri~RA~~ls~~~~~LPk   76 (105)
T PF02271_consen    4 SPWLSKFFKPLAKWYYN------ASGYRKYGLRYDDLLNE-EDPDVQEALRRLPPDEQYDRNFRIKRAMQLSLKHQYLPK   76 (105)
T ss_dssp             SCHHHHHHHHHHHHHHH------HHGGGGGT--GGGGS----SHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT----G
T ss_pred             cHHHHHHHHHHHHHHHH------hcchhhhcccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            47899999999999998      79999999999999997 699999999999999999999999999999999999999


Q ss_pred             ccchhh----hhHHHHHhhhhh
Q 033672           82 DLQVLV----SFILRKCTEASI   99 (114)
Q Consensus        82 e~q~k~----pYL~p~i~Ea~~   99 (114)
                      |+||++    |||.|||+|++.
T Consensus        77 e~wtk~e~d~~YL~p~i~ev~~   98 (105)
T PF02271_consen   77 EQWTKPEEDVPYLQPYIEEVEK   98 (105)
T ss_dssp             GGS--GGGS--SSHHHHHHHHH
T ss_pred             HHccCcccchHHHHHHHHHHHH
Confidence            999999    999999999875

Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. The 14 kDa (or VI) subunit of the complex is not directly involved in electron transfer, but has a role in assembly of the complex [].; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c; PDB: 3L74_F 3H1K_F 3L72_F 3H1L_S 3L71_S 3L70_S 3L73_F 3L75_F 1P84_G 3CXH_G ....

>KOG3440 consensus Ubiquinol cytochrome c reductase, subunit QCR7 [Energy production and conversion]

Probab=100.00  E-value=3.8e-36  Score=220.74  Aligned_cols=89  Identities=46%  Similarity=0.724  Sum_probs=83.3

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCcc
Q 033672            3 SLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED   82 (114)
Q Consensus         3 ~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPke   82 (114)
                      +.+.++|.|+++|+.|      .+|||+|||+||||+.| +|++|+|||||||++++|+|++||+||||||++|++|||+
T Consensus        10 ~~~~k~~~~~~~~~~n------l~g~rkyGL~~DDl~~e-~n~dvkeAlrRLPr~~~d~R~~Ri~RA~~Lsm~h~~LPk~   82 (122)
T KOG3440|consen   10 PVLGKLFLPLRKWAYN------LSGFRKYGLRYDDLYYE-ENEDVKEALRRLPRELYDARNYRIKRAMDLSMTHEILPKE   82 (122)
T ss_pred             ccchHHHHHHHHHHHH------HhhhhhhCccccccccc-cCHHHHHHHHHCcHHHHHHHHHHHHHHHHHhhhcccCCHH
Confidence            3567899999999998      89999999999999998 5999999999999999999999999999999999999999


Q ss_pred             cchhh----hhHHHHHhhhh
Q 033672           83 LQVLV----SFILRKCTEAS   98 (114)
Q Consensus        83 ~q~k~----pYL~p~i~Ea~   98 (114)
                      +||++    +||.||+.|++
T Consensus        83 ewtk~eed~~YL~pyL~ev~  102 (122)
T KOG3440|consen   83 EWTKYEEDVKYLEPYLAEVE  102 (122)
T ss_pred             HhhcccchhhHHHHHHHHHH
Confidence            99999    88888888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3cwb_F	110	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		7e-05
3h1h_F	110	Cytochrome Bc1 Complex From Chicken Length = 110		1e-04

>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 110

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQV 85
          +KEAL RLP+++ + R  R+KRA+DLS+KH  LP++  V
Sbjct: 43 VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWV 81

>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQV 85
          +KEAL RLP ++ + R  R+KRA+DLS+KH  LP++  V
Sbjct: 43 VKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWV 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	5e-21
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	6e-21

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G* Length = 126

 Score = 80.3 bits (198), Expect = 5e-21
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 4  LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARN 63
          +L  L  P  N              +  GL++DDL        ++ AL RLP +   AR 
Sbjct: 19 VLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAEENP-IMQTALRRLPEDESYARA 71

Query: 64 QRLKRAMDLSMKHEYLPEDLQV 85
           R+ RA    + H  LP +  +
Sbjct: 72 YRIIRAHQTELTHHLLPRNEWI 93

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ... Length = 110

 Score = 79.5 bits (196), Expect = 6e-21
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 3  SLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDAR 62
          S     L+  + W         +      GL  DD    + + D+KEA+ RLP  + D R
Sbjct: 7  SASSRWLEGIRKWYYN------AAGFNKLGLMRDDTI--HENDDVKEAIRRLPENLYDDR 58

Query: 63 NQRLKRAMDLSMKHEYLPEDLQV 85
            R+KRA+DLSM+ + LP++   
Sbjct: 59 VFRIKRALDLSMRQQILPKEQWT 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	100.0
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	100.0

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*

Probab=100.00  E-value=5.4e-40  Score=241.05  Aligned_cols=92  Identities=27%  Similarity=0.394  Sum_probs=87.6

Q ss_pred             hHHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCc
Q 033672            2 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPE   81 (114)
Q Consensus         2 ~~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPk   81 (114)
                      .+||+++++|+++||.|      ++|||||||+||||++| ++|+|+|||+|||+++.++|+|||+||+|||++|++||+
T Consensus        17 ~p~l~~~~~p~~~w~~~------~~g~rk~GL~~DDl~~e-~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPk   89 (126)
T 3cx5_G           17 SPVLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPR   89 (126)
T ss_dssp             CHHHHHHHHHHHHHHHH------HHCGGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred             hhHHHHHHHHHHHHHHH------HHHHHhccccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence            37899999999999987      59999999999999997 699999999999999999999999999999999999999


Q ss_pred             ccchhh----hhHHHHHhhhhhh
Q 033672           82 DLQVLV----SFILRKCTEASIF  100 (114)
Q Consensus        82 e~q~k~----pYL~p~i~Ea~~~  100 (114)
                      |+||++    |||.|||+|++.-
T Consensus        90 e~wtk~e~d~~YL~p~i~ev~~E  112 (126)
T 3cx5_G           90 NEWIKAQEDVPYLLPYILEAEAA  112 (126)
T ss_dssp             GGSCCGGGCCCSSHHHHHHHHHH
T ss_pred             HHccCCCcchHHHHHHHHHHHHH
Confidence            999999    9999999999864

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...

Probab=100.00  E-value=2.8e-38  Score=227.63  Aligned_cols=88  Identities=31%  Similarity=0.467  Sum_probs=81.1

Q ss_pred             HHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCcccc
Q 033672            5 LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQ   84 (114)
Q Consensus         5 L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPke~q   84 (114)
                      -.+++.|+++||.|      ++|||||||+||||++|  +++|+|||+|||+++.++|+|||+||+|||++|++||+|+|
T Consensus         9 ~~~~~~~~~~w~~n------~sg~rk~GL~~DDl~~e--~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~w   80 (110)
T 1pp9_F            9 SSRWLEGIRKWYYN------AAGFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQW   80 (110)
T ss_dssp             ---CHHHHHHHHHH------HHCGGGGTCCGGGGSCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGS
T ss_pred             HHHHHHHHHHHHHH------HHHHHHhcccHHhccCC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHc
Confidence            35788999999998      79999999999999986  68999999999999999999999999999999999999999


Q ss_pred             hhh----hhHHHHHhhhhhh
Q 033672           85 VLV----SFILRKCTEASIF  100 (114)
Q Consensus        85 ~k~----pYL~p~i~Ea~~~  100 (114)
                      |++    |||.|||+|++.-
T Consensus        81 tk~e~d~~YL~p~i~ev~~E  100 (110)
T 1pp9_F           81 TKYEEDKSYLEPYLKEVIRE  100 (110)
T ss_dssp             CCGGGCCCSSHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHH
Confidence            999    9999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d3cx5g1	125	f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc	9e-22
d1ppjf_	99	f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 com	5e-21

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (200), Expect = 9e-22
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 1  MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           + +L  L  P  N              +  GL++DDL        ++ AL RLP +   
Sbjct: 15 KSPVLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAEENP-IMQTALRRLPEDESY 67

Query: 61 ARNQRLKRAMDLSMKHEYLPEDLQV 85
          AR  R+ RA    + H  LP +  +
Sbjct: 68 ARAYRIIRAHQTELTHHLLPRNEWI 92

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 99

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (193), Expect = 5e-21
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 9  LDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKR 68
          L+  + W         +      GL  DD      + D+KEA+ RLP  + D R  R+KR
Sbjct: 2  LEGIRKWYYN------AAGFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKR 53

Query: 69 AMDLSMKHEYLPEDLQV 85
          A+DLSM+ + LP++   
Sbjct: 54 ALDLSMRQQILPKEQWT 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d3cx5g1	125	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0
d1ppjf_	99	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-41  Score=247.91  Aligned_cols=92  Identities=27%  Similarity=0.394  Sum_probs=88.5

Q ss_pred             hHHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCc
Q 033672            2 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPE   81 (114)
Q Consensus         2 ~~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPk   81 (114)
                      +|||+++++|+++||.|      ++||||+||+||||++| ++|+|+|||+|||+++.++|+|||+||+|||++|++|||
T Consensus        16 ~p~l~k~~~p~a~w~~n------~sgyrk~GL~~DDli~e-~~~~v~eAlrRLP~~~~~~R~~Ri~RA~~LS~~h~~LPk   88 (125)
T d3cx5g1          16 SPVLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPR   88 (125)
T ss_dssp             CHHHHHHHHHHHHHHHH------HHCGGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred             cHHHHHHHHHHHHHHHH------HhChhhccCcHhhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcccCCH
Confidence            58999999999999998      79999999999999997 699999999999999999999999999999999999999


Q ss_pred             ccchhh----hhHHHHHhhhhhh
Q 033672           82 DLQVLV----SFILRKCTEASIF  100 (114)
Q Consensus        82 e~q~k~----pYL~p~i~Ea~~~  100 (114)
                      |+||++    |||.|||+|++.-
T Consensus        89 eqwtk~eeD~~YL~Pyi~ev~~E  111 (125)
T d3cx5g1          89 NEWIKAQEDVPYLLPYILEAEAA  111 (125)
T ss_dssp             GGSCCGGGCCCSSHHHHHHHHHH
T ss_pred             HHccCCcccchhHHHHHHHHHHH
Confidence            999999    9999999998864

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-39  Score=229.59  Aligned_cols=85  Identities=32%  Similarity=0.483  Sum_probs=79.8

Q ss_pred             HHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCcccchhh
Q 033672            8 LLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVLV   87 (114)
Q Consensus         8 ~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPke~q~k~   87 (114)
                      +++|+++||.|      ++||||+||+|||||.  +||+|+|||+|||+++.++|+|||+||+|||++|++||||+||++
T Consensus         1 w~~p~~~w~~n------~sgyrk~GL~~DDli~--e~~~v~eAlrRLP~~~~~~R~~Ri~RA~~Ls~~h~~LPkeqwtk~   72 (99)
T d1ppjf_           1 WLEGIRKWYYN------AAGFNKLGLMRDDTIH--ENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKY   72 (99)
T ss_dssp             CHHHHHHHHHH------HHCGGGGTCCGGGGCC--CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCG
T ss_pred             CccHHHHHHHH------HhhhhhhcccHhhccc--CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCHHHccCC
Confidence            46788888887      7999999999999994  489999999999999999999999999999999999999999999


Q ss_pred             ----hhHHHHHhhhhhh
Q 033672           88 ----SFILRKCTEASIF  100 (114)
Q Consensus        88 ----pYL~p~i~Ea~~~  100 (114)
                          |||.|||+|++.-
T Consensus        73 eed~~YL~Pyi~ev~~E   89 (99)
T d1ppjf_          73 EEDKSYLEPYLKEVIRE   89 (99)
T ss_dssp             GGCCCSSHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHH
Confidence                9999999999863