Citrus Sinensis ID: 033675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MRRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccccccccccEEEEEEEccEEEEEEccccEEEEEEEccccEEEcccccccccEEEEccccEEEEEccccHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccccccEEEEEEcccEEEEEEcccccEEEEEcccccEEEcccccccccEEEcccccEEEEcccccccHHHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
MRRSLIFLLLLTVILsslpptspraspesgdLALVATLNGTVHlvdtkrgesrwsfsmgkpiyssftrndpdfyvdvgedwklYFHRkgigkmkdimksttpncyftnfrgnll
Flexible Loop (DISEMBL)
MRRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLvdtkrgesrwsfsmgkpiyssftrnDPDFYVDVGEDWKLYFHRKGIgkmkdimksttpncyftnfrgnll
Low Complexity Region (SEG)
MRRsliflllltvilsslpptspRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNLL
Disordered region (IsUnstruct)
****LIFLLLLTVILS***************LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFR****
Disordered Region (DISOPRED)
*RRSLIFLLLLTVI*******************LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNLL
Disordered Region (DISEMBL)
MRRSLIFLLLLTVILSSLP**********GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNLL
Disordered Region (DISPRO)
*RRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
255539280	720	conserved hypothetical protein [Ricinus	0.868	0.137	0.364	6e-13
296082563	332	unnamed protein product [Vitis vinifera]	0.596	0.204	0.467	2e-10
297745578	827	unnamed protein product [Vitis vinifera]	0.885	0.122	0.357	1e-09
225457602	925	PREDICTED: uncharacterized protein LOC10	0.885	0.109	0.357	1e-09
225438442	957	PREDICTED: uncharacterized protein LOC10	0.561	0.066	0.479	1e-09
449434428	898	PREDICTED: uncharacterized protein LOC10	0.535	0.067	0.44	4e-08
449491419	831	PREDICTED: uncharacterized LOC101215649	0.535	0.073	0.44	5e-08
224074275	822	predicted protein [Populus trichocarpa]	0.535	0.074	0.432	1e-06
357484205	904	Serine/threonine protein kinase/endoribo	0.543	0.068	0.444	1e-06
356495301	895	PREDICTED: uncharacterized protein LOC10	0.657	0.083	0.409	2e-06

>gi|255539280|ref|XP_002510705.1| conserved hypothetical protein [Ricinus communis] gi|223551406|gb|EEF52892.1| conserved hypothetical protein [Ricinus communis]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 65/137 (47%), Gaps = 38/137 (27%)

Query: 1   MRRSLIFLLLLTVILSSL----------PPTSPRASPE-------------SGDLALVAT 37
           MRR LI LL   V+L  L           P+ P  S +               D+ALVA 
Sbjct: 1   MRRYLILLLFKLVMLIPLIRSISGSAISQPSIPDESSQISKLYKSFLPPKPKQDVALVAA 60

Query: 38  LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD---------------FYVDVGEDWK 82
           L+GTV+ VDT   + RWSFS G PIYSS+  N  D               +Y+D G+DW+
Sbjct: 61  LDGTVYFVDTNSRKVRWSFSSGSPIYSSYQANPNDDEDRHNSGSELSNDLYYIDCGDDWE 120

Query: 83  LYFHRKGIGKMKDIMKS 99
           LY H K  GK++ +  S
Sbjct: 121 LYVHSKRFGKLQKLALS 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082563|emb|CBI21568.3| unnamed protein product [Vitis vinifera]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 9/77 (11%)

Query: 27  PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDPD----FYVDV 77
           P   D ALVA LNGT+HLV++   +  WSF+ G  IYSS+       N  D    F+VD 
Sbjct: 55  PNKNDTALVAALNGTIHLVESNSMKVLWSFTSGPSIYSSYQAPLDQDNATDWGSGFFVDC 114

Query: 78  GEDWKLYFHRKGIGKMK 94
           GEDW+LY H +  GK+K
Sbjct: 115 GEDWELYMHGRHFGKVK 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745578|emb|CBI40743.3| unnamed protein product [Vitis vinifera]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 36/137 (26%)

Query: 1   MRRSLIFLLLLTVI-----LSSLPPTS------------------PRASPESGDLALVAT 37
           M+RSLIFLL    I     +S+ P TS                  P+A     D+ALVA 
Sbjct: 1   MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAP--KNDIALVAA 58

Query: 38  LNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDP----DFYVDVGEDWKLYFHRK 88
           L+GT++LV+    +  WSF+ G  IYSS+       ND     DF++D G+DW+LY H  
Sbjct: 59  LDGTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNI 118

Query: 89  GIGKMKDIMKSTTPNCY 105
             GK + ++   TP  Y
Sbjct: 119 SFGKREKLL--LTPEKY 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457602|ref|XP_002272934.1| PREDICTED: uncharacterized protein LOC100247854 [Vitis vinifera]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 36/137 (26%)

Query: 1   MRRSLIFLLLLTVI-----LSSLPPTS------------------PRASPESGDLALVAT 37
           M+RSLIFLL    I     +S+ P TS                  P+A     D+ALVA 
Sbjct: 1   MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAP--KNDIALVAA 58

Query: 38  LNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDP----DFYVDVGEDWKLYFHRK 88
           L+GT++LV+    +  WSF+ G  IYSS+       ND     DF++D G+DW+LY H  
Sbjct: 59  LDGTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNI 118

Query: 89  GIGKMKDIMKSTTPNCY 105
             GK + ++   TP  Y
Sbjct: 119 SFGKREKLL--LTPEKY 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438442|ref|XP_002275036.1| PREDICTED: uncharacterized protein LOC100249111 [Vitis vinifera]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 9/73 (12%)

Query: 31  DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-----NDPD----FYVDVGEDW 81
           D ALVA LNGT+HLV++   +  WSF+ G  IYSS+       N  D    F+VD GEDW
Sbjct: 90  DTALVAALNGTIHLVESNSMKVLWSFTSGPSIYSSYQAPLDQDNATDWGSGFFVDCGEDW 149

Query: 82  KLYFHRKGIGKMK 94
           +LY H +  GK+K
Sbjct: 150 ELYMHGRHFGKVK 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434428|ref|XP_004134998.1| PREDICTED: uncharacterized protein LOC101215649 [Cucumis sativus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 14/75 (18%)

Query: 33  ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPD----------FYVDVGE 79
           AL+A L+G +HLVD+   +  WSFS G PIYSS+  N   +P+          F+ D G+
Sbjct: 60  ALIAALDGAIHLVDSNSMKIIWSFSSGPPIYSSYQANINHEPNQENASGVGSSFFFDCGD 119

Query: 80  DWKLYFHRKGIGKMK 94
           DW+LY H +  GKMK
Sbjct: 120 DWELYIHTEH-GKMK 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491419|ref|XP_004158890.1| PREDICTED: uncharacterized LOC101215649 [Cucumis sativus]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 14/75 (18%)

Query: 33  ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPD----------FYVDVGE 79
           AL+A L+G +HLVD+   +  WSFS G PIYSS+  N   +P+          F+ D G+
Sbjct: 60  ALIAALDGAIHLVDSNSMKIIWSFSSGPPIYSSYQANINHEPNQENASGVGSSFFFDCGD 119

Query: 80  DWKLYFHRKGIGKMK 94
           DW+LY H +  GKMK
Sbjct: 120 DWELYIHTEH-GKMK 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074275|ref|XP_002304333.1| predicted protein [Populus trichocarpa] gi|222841765|gb|EEE79312.1| predicted protein [Populus trichocarpa]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 13/74 (17%)

Query: 34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF---TRNDPD----------FYVDVGED 80
          LVA LNGT++  D   G+  WSFS G P YSS+    ++D D          F++D G+D
Sbjct: 1  LVALLNGTIYFKDKISGKILWSFSSGGPTYSSYQAPAKHDSDKEKGPGGLTGFFLDYGDD 60

Query: 81 WKLYFHRKGIGKMK 94
          W+LY H K  G MK
Sbjct: 61 WQLYAHYKYSGGMK 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484205|ref|XP_003612390.1| Serine/threonine protein kinase/endoribonuclease IRE1 [Medicago truncatula] gi|355513725|gb|AES95348.1| Serine/threonine protein kinase/endoribonuclease IRE1 [Medicago truncatula]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 33  ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIG 91
           ALVA L+GT++LV++  G   WSFS G PIY S     P    ++ G+DW+L FH    G
Sbjct: 66  ALVAGLDGTIYLVESASGRVIWSFSSGSPIYHSSANTPPSSGLIECGDDWELIFHDPHFG 125

Query: 92  KMK 94
           K +
Sbjct: 126 KTR 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495301|ref|XP_003516517.1| PREDICTED: uncharacterized protein LOC100785363 [Glycine max]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 13/88 (14%)

Query: 15  LSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR---NDP 71
           L SLP  +P   P +   ALVA L+GT++LVD+  G   WSFS G PIY    R   NDP
Sbjct: 36  LPSLP--APSLKPAT---ALVAALDGTMYLVDSVSGRVFWSFSTGSPIYHHSYRAPINDP 90

Query: 72  D-----FYVDVGEDWKLYFHRKGIGKMK 94
           +       ++ G+DW+L  H    GK +
Sbjct: 91  EDNNVTGLIECGDDWELIVHDARFGKTR 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
cd09213	312	cd09213, Luminal_IRE1_like, The Luminal domain, a	5e-10
cd09769	295	cd09769, Luminal_IRE1, The Luminal domain, a dimer	3e-04

>gnl|CDD|188873 cd09213, Luminal_IRE1_like, The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS--FTRND------PDFYVDVGEDWKL 83
          L LVATL+GT++ VD   GE +WSF  G P+YSS   +R+             +  D  L
Sbjct: 1  LLLVATLDGTIYAVDASSGEIQWSFDGGGPLYSSYQSSRDGNAESSSTMLIPSLDGDGNL 60

Query: 84 YFHRKGIGKMK 94
          Y H KG G ++
Sbjct: 61 YQHDKGHGSLQ 71

The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR. Length = 312

>gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain, of the Serine/Threonine protein kinase, Inositol-requiring protein 1

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPI-----YSSFTRNDPDFYVDVGEDWKLYF 85
          DL LV+T++G +H VD K G+  WS     P+     +S+ + + P F V+   D  LY 
Sbjct: 2  DLLLVSTVDGGLHAVDRKTGKILWSLKAEDPLVEVPHHSTLSIDGPTFIVE-PRDGSLYV 60

Query: 86 HRKGIGKMK 94
             G   +K
Sbjct: 61 LNPGNEGLK 69

The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), a serine/threonine protein kinase (STK) and a type I transmembrane protein that is localized in the endoplasmic reticulum (ER). IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), is a kinase receptor that also contains an endoribonuclease domain in the cytoplasmic side. It plays roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1 acts as an ER stress sensor and is the oldest and most conserved component of the UPR in eukaryotes. During ER stress, IRE1 dimerizes through its luminal domain and forms oligomers, allowing the kinase domain to undergo trans-autophosphorylation. This leads to a conformational change that stimulates its endoribonuclease activity and results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. Mammals contain two IRE1 proteins, IRE1alpha (or ERN1) and IRE1beta (or ERN2). IRE1alpha is expressed in all cells and tissues while IRE1beta is found only in intestinal epithelial cells. Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	98.03
KOG1027	903	consensus Serine/threonine protein kinase and endo	97.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.58
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.27
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	97.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.75
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.56
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.32
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.79
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.31
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.25
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.05
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.04
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.77
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.35
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	92.23
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.83
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.76
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	88.83
TIGR02801	129	tolR TolR protein. The model describes the inner m	87.47
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	85.46
PTZ00421	493	coronin; Provisional	83.39
PRK11267	141	biopolymer transport protein ExbD; Provisional	82.92
TIGR02804	121	ExbD_2 TonB system transport protein ExbD, group 2	82.73
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	82.4
PRK11024	141	colicin uptake protein TolR; Provisional	80.05

>PF01011 PQQ: PQQ enzyme repeat family

Probab=98.03  E-value=7.3e-06  Score=47.38  Aligned_cols=35  Identities=34%  Similarity=0.584  Sum_probs=31.8

Q ss_pred             CceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675           31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS   65 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS   65 (114)
                      +..++++.||.||.+|..+|++.|+|.++.++.++
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~   35 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSS   35 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSC
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccC
Confidence            35688999999999999999999999999998775

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=97.67  E-value=6.1e-05  Score=70.10  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC--------------CCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--------------DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~--------------~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....+++.++..|+||..+|+.+|.|++.+||+++++++              +-+++++|+|+|..|+.+.+.+||.
T Consensus       106 sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~~~~v~~grt~ytv~m~d~~~~~~~wn~t~~dy~a~~~~~~~~~~~~  185 (903)
T KOG1027|consen  106 SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPIKQLVYLGRTNYTVTMYDKNVRGKTWNTTFGDYSAQYPSGVRGEKMS  185 (903)
T ss_pred             CCCeEEecccccceEEecCCccceeEEEecCCcchhheecccceeEEecccCcccCceeeccccchhccCCCccCCceeE
Confidence            67788899999999999999999999999999999999888              1168999999999999999999996


Q ss_pred             eecccCCCceee
Q 033675           95 DIMKSTTPNCYF  106 (114)
Q Consensus        95 l~~~s~~~~~~~  106 (114)
                      -..+..  |-|+
T Consensus       186 ~~~~~~--~g~i  195 (903)
T KOG1027|consen  186 HFHSLG--NGYI  195 (903)
T ss_pred             EEeecC--CccE
Confidence            555544  4444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.58  E-value=0.00047  Score=48.39  Aligned_cols=67  Identities=25%  Similarity=0.399  Sum_probs=57.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      ..+..+|++.+|.||.+|..+|+..|++..++++...-...++..|+-+.|. +||.-+..-|+..-.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDG-SLYALDAKTGKVLWS  101 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTS-EEEEEETTTSCEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccccee-eeEecccCCcceeee
Confidence            6778888999999999999999999999999998877555566778888777 999999999998444

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.27  E-value=0.0022  Score=49.48  Aligned_cols=66  Identities=21%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      ..+..+|++.||++|.+|..+|++.|++..+.+++++=...++..|+-+ .|=.||.-+..-|+.+-
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-~~g~l~a~d~~tG~~~W  169 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRT-NDGRLTALDAATGERLW  169 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEEC-CCCeEEEEEcCCCceee
Confidence            5677889999999999999999999999999988765444344456654 45679999998898743

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00564 PQQ beta-propeller repeat

Probab=97.26  E-value=0.00054  Score=37.01  Aligned_cols=29  Identities=31%  Similarity=0.601  Sum_probs=25.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFS   57 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFS   57 (114)
                      .++..++++.||.||.+|..+|++.|++.
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~~   33 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEILWTYK   33 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence            34578999999999999999999999973

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.23  E-value=0.0013  Score=51.78  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      ..+..+|++.||+||.+|..+|++.|++..+.+++++--+.+...|+-.++. .||..+..-||..-
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g-~l~ald~~tG~~~W  184 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNG-MLQALNESDGAVKW  184 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCC-EEEEEEccCCCEee
Confidence            3456788999999999999999999999999998876545455567766665 79999999999843

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.95  E-value=0.0038  Score=48.17  Aligned_cols=65  Identities=17%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ..+..+|++.||.||.+|..+|++.|++..+.++.++-.+.++..|+-+.+. .||.-+..-||.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g-~l~ald~~tG~~~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKG-EVIALDAEDGKEL  128 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCC-EEEEEECCCCcEe
Confidence            4556789999999999999999999999999988766444444556655544 6777777777763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.83  E-value=0.013  Score=46.19  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=42.2

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC--eee---------eeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYS---------SFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP--IYS---------SYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..+.++|++-+|.+|.+|..+|+++|++..+..  +++         +-.+.+...|+-+. +=.||.-+..-||.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~g~l~ald~~tG~~  142 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-KGQVYALNAEDGEV  142 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-CCEEEEEECCCCCC
Confidence            345668888999999999999999999987651  111         10111223344332 33688888888887

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.20  E-value=0.0084  Score=49.76  Aligned_cols=38  Identities=21%  Similarity=0.490  Sum_probs=34.8

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS   65 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS   65 (114)
                      ...++.+|++.||+||.+|..+|+.+|++..++++.++
T Consensus       404 ~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~  441 (488)
T cd00216         404 TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQAT  441 (488)
T ss_pred             ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEc
Confidence            36688999999999999999999999999999999865

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.75  E-value=0.044  Score=45.54  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             CceEEEeeCCeEEEEeCCCCeeeEEeecCCCe------eeeeecCCCCceee--------eCCcceEeeeeccccceee
Q 033675           31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPI------YSSFTRNDPDFYVD--------VGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPI------YSSYqA~~~~~fid--------cgdDW~LY~h~~~~GK~kl   95 (114)
                      +.++|++.||.||.+|..+|++.|.|..+.++      .++-.+-+.-.|+-        |+.+=.+|..+..-||.+=
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            89999999999999999999999999998773      33322223222332        2233378999998888743

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.56  E-value=0.022  Score=48.65  Aligned_cols=37  Identities=38%  Similarity=0.682  Sum_probs=33.2

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS   65 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS   65 (114)
                      ..++.++++.||.++.+|..+||++|+|..|+++.+|
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~  507 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGP  507 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceec
Confidence            5678888999999999999999999999999887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.32  E-value=0.088  Score=36.98  Aligned_cols=67  Identities=27%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEe-ecCCCee---ee--eecCCCCceeeeCCcceEeeeecccccee
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIY---SS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSF-StGsPIY---SS--YqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ....+..+|++.||.||.+|..+|++.|++ .+..|.-   ++  ..+ .++.++=+..+=.|+..+..-||..
T Consensus        73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen   73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEE
T ss_pred             eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEE
Confidence            447778899999999999999999999996 4443322   11  111 2344444444888999999999983

...

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.79  E-value=0.64  Score=30.50  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCC-CeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      ....++++.||+|+++|..++++...|.... +|.+-.-.++...++=++.|-++++.+...|+....
T Consensus       147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence            4455555569999999999999999988655 666554444444677788899999998887776433

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.31  E-value=0.16  Score=43.49  Aligned_cols=69  Identities=17%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe--eeeeecC---CCCceee-----eCCcceEeeeeccccceeee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI--YSSFTRN---DPDFYVD-----VGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI--YSSYqA~---~~~~fid-----cgdDW~LY~h~~~~GK~kl~   96 (114)
                      ...+.++|++.||.|+.+|..+||+.|++..+.+-  |..-.+|   ++.-|+-     ++.+=.++..+..-||..=.
T Consensus       118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            35578999999999999999999999999875432  2222222   3333443     22233789999999988443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.25  E-value=0.35  Score=38.00  Aligned_cols=68  Identities=28%  Similarity=0.427  Sum_probs=51.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCC-Ceeee-eecCCCCceeeeCCcceEeeeeccccceeeec
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIM   97 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSS-YqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~   97 (114)
                      .....+|++.||.+|..|..+|+..|++..+. |.+.+ ....+...|+.. +|=.+|.=++.-|+.+-..
T Consensus       110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence            46779999999999999999999999999999 44432 222244557766 6667888888888875443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.05  E-value=1.7  Score=28.55  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEe-ecCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSF-StGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....++++-||.|++++..++++.-.+ ....++.+..-.+++..++-+++|=++++.+..-|+..
T Consensus       188 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence            3346777778999999999999999888 55667777644445556666666888888887766653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.04  E-value=0.42  Score=43.65  Aligned_cols=35  Identities=11%  Similarity=0.202  Sum_probs=30.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI   62 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI   62 (114)
                      ...+..++++.||.||.+|..+|++.|+|.+++.+
T Consensus       258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~v  292 (764)
T TIGR03074       258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTV  292 (764)
T ss_pred             ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCce
Confidence            35668899999999999999999999999886544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.77  E-value=2.2  Score=29.86  Aligned_cols=59  Identities=17%  Similarity=0.162  Sum_probs=41.1

Q ss_pred             EEeeCCeEEEEeCCCCeeeEEeecCCCee-eeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           35 VATLNGTVHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        35 VatlDGTiYLVd~~s~r~~WSFStGsPIY-SSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +++.||+|++++..+++....+..+.... -.+....+..|+-|++|-+++.-+..-++.
T Consensus        48 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        48 CASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             EECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            34578999999999999988877654332 222211234578888888999888776654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.35  E-value=0.64  Score=36.59  Aligned_cols=67  Identities=22%  Similarity=0.371  Sum_probs=49.6

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC----eeeeeecCCCCceeeeCCcc--eEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDW--KLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP----IYSSYqA~~~~~fidcgdDW--~LY~h~~~~GK~kl~   96 (114)
                      ...++++.+.||.+|.++.++|+..|.+....|    ++++-.+.+..-|+.+.+ |  +||..+..=|..+-.
T Consensus       152 ~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         152 GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-YDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-CcceEEEEEccCCcEeee
Confidence            566778888899999999999999999887654    222222223445787775 4  999999988887444

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=92.23  E-value=0.16  Score=28.90  Aligned_cols=29  Identities=38%  Similarity=0.716  Sum_probs=15.3

Q ss_pred             CeeeEEeecCCCeeeeeecCCCCceeeeC
Q 033675           50 GESRWSFSMGKPIYSSFTRNDPDFYVDVG   78 (114)
Q Consensus        50 ~r~~WSFStGsPIYSSYqA~~~~~fidcg   78 (114)
                      |+++|++..+++++++-.+-+...|+-..
T Consensus         1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~   29 (40)
T PF13570_consen    1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTG   29 (40)
T ss_dssp             S-EEEEEE-SS---S--EECTSEEEEE-T
T ss_pred             CceeEEEECCCCcCcCCEEECCEEEEEcC
Confidence            78999999999999886555544455554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.83  E-value=0.86  Score=41.68  Aligned_cols=74  Identities=18%  Similarity=0.377  Sum_probs=55.3

Q ss_pred             CCCceEEEee----------CCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCcee-eeCCcceEeeeeccccceeeec
Q 033675           29 SGDLALVATL----------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV-DVGEDWKLYFHRKGIGKMKDIM   97 (114)
Q Consensus        29 ~~~taLVatl----------DGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fi-dcgdDW~LY~h~~~~GK~kl~~   97 (114)
                      -.++++|++.          +|.|+..|..+||..|.|.+|.|.-..-- .+.+-|. ..+.-|....=|+.-|-.-..+
T Consensus       315 ~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~-~~g~~~~~gg~n~W~~~s~D~~~glvy~pt  393 (764)
T TIGR03074       315 AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPP-APGETYTRNTPNSWSVASYDEKLGLVYLPM  393 (764)
T ss_pred             ECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCC-CCCCEeccCCCCccCceEEcCCCCeEEEeC
Confidence            5678888853          79999999999999999999988765321 1333343 6677888888888888777777


Q ss_pred             ccCCCc
Q 033675           98 KSTTPN  103 (114)
Q Consensus        98 ~s~~~~  103 (114)
                      ...+|.
T Consensus       394 Gn~~pd  399 (764)
T TIGR03074       394 GNQTPD  399 (764)
T ss_pred             CCcccc
Confidence            666664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.76  E-value=0.39  Score=41.41  Aligned_cols=35  Identities=23%  Similarity=0.564  Sum_probs=30.6

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS   65 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS   65 (114)
                      .....++++||.+--.+ .+||..|.|++++||+++
T Consensus       189 ~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~  223 (354)
T KOG4649|consen  189 GSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFME  223 (354)
T ss_pred             cceEEEEEeccEEEEEc-CCCcEEEeecCCCceecc
Confidence            34567788999999998 899999999999999965

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=88.83  E-value=6.3  Score=27.57  Aligned_cols=61  Identities=16%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             eEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCC-ceeeeCCcceEeeeeccccce
Q 033675           33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        33 aLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ...++.||+|+++|..++++...|..+....+..-.++.. .|+-+++|=.++..+..-|+.
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~   65 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV   65 (300)
T ss_pred             EEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            3456779999999999999999988654333222222333 466666666677777666655

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02801 tolR TolR protein

Probab=87.47  E-value=1.9  Score=29.82  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=18.4

Q ss_pred             cCCCCCCCCC--CCCCCceEEEeeCCeEEEE
Q 033675           17 SLPPTSPRAS--PESGDLALVATLNGTVHLV   45 (114)
Q Consensus        17 s~p~~s~~~~--~~~~~taLVatlDGTiYLV   45 (114)
                      .+|..++...  ..+....+.-+-||++|+-
T Consensus        35 ~lP~~~~~~~~~~~~~~~~i~i~~~g~~~~~   65 (129)
T TIGR02801        35 DLPKSSAKPLQSKDKKPITVSVDADGKIYLN   65 (129)
T ss_pred             eCCCCCCCCCCCCCCCCEEEEEeCCCcEEEc
Confidence            5666555432  2235667777889999873

The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=85.46  E-value=1.2  Score=25.26  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCCC
Q 033675           28 ESGDLALVATLNGTVHLVDTKR   49 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s   49 (114)
                      ...+.++|++.||+||.+|..+
T Consensus        19 v~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   19 VAGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             ECTSEEEEE-TTSEEEEEETT-
T ss_pred             EECCEEEEEcCCCEEEEEeCCC
Confidence            3778999999999999998764

>PTZ00421 coronin; Provisional

Probab=83.39  E-value=20  Score=30.83  Aligned_cols=64  Identities=19%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             CceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           31 DLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +..+.|+.||+|.++|..+++..=.+.. ..+|++--=.++...++-++.|-.+...|.+-|+..
T Consensus       139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v  203 (493)
T PTZ00421        139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV  203 (493)
T ss_pred             CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE
Confidence            4666789999999999999998877753 445665422234456888999999999999888763

>PRK11267 biopolymer transport protein ExbD; Provisional

Probab=82.92  E-value=3.7  Score=29.38  Aligned_cols=28  Identities=14%  Similarity=0.382  Sum_probs=15.0

Q ss_pred             cCCCCCCCCCC-CCCCceEEEeeCCeEEE
Q 033675           17 SLPPTSPRASP-ESGDLALVATLNGTVHL   44 (114)
Q Consensus        17 s~p~~s~~~~~-~~~~taLVatlDGTiYL   44 (114)
                      .+|..+.+... ++....+..+-||++|+
T Consensus        48 ~LP~a~~~~~~~~~~~~~i~I~~~g~i~~   76 (141)
T PRK11267         48 NLPASTSTPQPRPEKPVYLSVKADNSMFI   76 (141)
T ss_pred             cCCCCCCCCCCCCCCCEEEEEeCCCCEEE
Confidence            46655443322 22334444557888888

>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2

Probab=82.73  E-value=4.3  Score=28.17  Aligned_cols=28  Identities=18%  Similarity=0.250  Sum_probs=15.9

Q ss_pred             cCCCCCCCCCC--CCCCceEEEeeCCeEEE
Q 033675           17 SLPPTSPRASP--ESGDLALVATLNGTVHL   44 (114)
Q Consensus        17 s~p~~s~~~~~--~~~~taLVatlDGTiYL   44 (114)
                      .+|..++....  .+....+..+-||++|+
T Consensus        35 ~lP~a~~~~~~~~~~~~~~v~i~~~g~~~~   64 (121)
T TIGR02804        35 NLPKASTAVAFKSDELKLLITITADNQLYF   64 (121)
T ss_pred             cCCCCCCCCCCCCCCCcEEEEEECCCCEEE
Confidence            45655443322  22345556677889887

Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=82.40  E-value=2  Score=26.53  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEE
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWS   55 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WS   55 (114)
                      +|+-++.-+|+-||.|++... +++.+|+
T Consensus        20 ~P~mdLiA~~t~~g~v~v~Rl-~~qriw~   47 (47)
T PF12894_consen   20 CPTMDLIALGTEDGEVLVYRL-NWQRIWS   47 (47)
T ss_pred             CCCCCEEEEEECCCeEEEEEC-CCcCccC
Confidence            678899999999999999998 7777785

>PRK11024 colicin uptake protein TolR; Provisional

Probab=80.05  E-value=5.4  Score=28.46  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=15.8

Q ss_pred             cCCCCCCCCCC---CCCCceEEEeeCCeEEEE
Q 033675           17 SLPPTSPRASP---ESGDLALVATLNGTVHLV   45 (114)
Q Consensus        17 s~p~~s~~~~~---~~~~taLVatlDGTiYLV   45 (114)
                      .+|..+.+...   .+....+-.+-||++|+.
T Consensus        45 ~LP~~~~~~~~~~~~~~~i~i~i~~~g~~~~~   76 (141)
T PRK11024         45 DLPDATESQAVSSNDNPPVIVEVSGVGQYTVV   76 (141)
T ss_pred             eCCCCCCCCCCCCCCCCCEEEEEeCCCcEEEe
Confidence            56766543221   233444555667888873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	2e-08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	9e-08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	9e-05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	7e-04

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 31 DLALVATLNGTVHLVDTKRGESRWSF------SMGKPIYSSFTRNDPDFYVDVGEDWKLY 84
          D+ + A + G +H VD + G   WS        + +    S         ++   D  +Y
Sbjct: 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIY 70

Query: 85 FHRKGIGKMK 94
          +     G  K
Sbjct: 71 YFNAHQGLQK 80

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 29  SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRK 88
              L  V+TL+G++H V  + G  +W+      +       +P F  D   D  LY    
Sbjct: 8   PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD-PNDGSLYTLGS 66

Query: 89  GIGKMKDIMKSTTP 102
              +    +  T P
Sbjct: 67  KNNEGLTKLPFTIP 80

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 2/73 (2%)

Query: 14  ILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPD 72
              +L      +   S  L  +     T+ + DTK  E RW+ +      S      D  
Sbjct: 114 KQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYK 173

Query: 73  FYVDVG-EDWKLY 84
               V   D  + 
Sbjct: 174 MSHFVSNGDGLVV 186

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 20  PTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT 67
            + P    +      V+  +G V  VD++ G+  W  +   P+ + + 
Sbjct: 163 ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYV 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	98.08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.35
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.2
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.07
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.68
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.6
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.46
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.44
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.44
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.41
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.33
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.26
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.24
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.03
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.0
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.82
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.8
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.77
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.67
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.54
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.54
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.45
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.44
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.32
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.19
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.17
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	94.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	94.69
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.6
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.58
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.57
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.57
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.53
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.53
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.4
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.29
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.26
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	94.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.24
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.15
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.1
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.99
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.92
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	93.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	93.75
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.74
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.71
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	93.61
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.6
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.5
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	93.39
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.37
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.32
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.28
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.27
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	93.03
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	92.91
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	92.82
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	92.82
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	92.8
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.74
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.73
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	92.66
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	92.65
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	92.63
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.53
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	92.49
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.35
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.05
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	91.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	91.67
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	91.58
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	91.53
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	91.44
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	91.26
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.13
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	91.12
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	90.86
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.84
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	90.31
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	89.41
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	89.3
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.87
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	88.6
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	88.53
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.01
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	87.88
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	87.5
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	87.46
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	86.45
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	86.04
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	85.59
3jro_A	753	Fusion protein of protein transport protein SEC13	85.45
3jro_A	753	Fusion protein of protein transport protein SEC13	85.29
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	85.19
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	83.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	83.54
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	82.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	82.72
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	82.32
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	82.3
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	82.18
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	81.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	81.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	81.12
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	81.01

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=98.08  E-value=5.7e-06  Score=65.77  Aligned_cols=68  Identities=22%  Similarity=0.323  Sum_probs=52.6

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC--CC-eeeeeecCC-C-Cc-eeeeCCcceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG--KP-IYSSFTRND-P-DF-YVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG--sP-IYSSYqA~~-~-~~-fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      ..++++|++.||+||.+|..+|+..|+|.++  +| +..+..+.. + .. .+++..|-+||..+..-|+.+..
T Consensus         9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~   82 (339)
T 2be1_A            9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP   82 (339)
T ss_dssp             EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred             eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence            3578999999999999999999999999997  44 444433332 2 23 35667999999999999977643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.35  E-value=0.00034  Score=52.51  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=45.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..++.++++.||+||.+|..+|+..|++.. +++.++-...+...|+-...|=.||.-+..-|+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence            678899999999999999999999999998 6666553333444566656777899998877776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.20  E-value=0.0019  Score=46.51  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      ..+..+|++.||.||.+|..+|+..|++..+.++.++-.+.+...|+-..+. .||.-+..-|+.+-
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g-~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNG-QLQALNEADGAVKW  167 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTS-EEEEEETTTCCEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCC-eEEEEECCCCcEEE
Confidence            5678899999999999999999999999999887766555455556655443 79999988888743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.07  E-value=0.013  Score=39.46  Aligned_cols=79  Identities=15%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             eEEEeeCCeEEEEeCCCCeeeEEeec---CCCeeeeeecCCCCceeeeCCcceEeeeeccccceeeecccCCCceeeeec
Q 033675           33 ALVATLNGTVHLVDTKRGESRWSFSM---GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCYFTNF  109 (114)
Q Consensus        33 aLVatlDGTiYLVd~~s~r~~WSFSt---GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~~s~~~~~~~~~~  109 (114)
                      .|.++.||||+++|..+|+..-.+.-   +.+|.+-.-.++...++-++.|=.+.+.+..-|+........+..+....+
T Consensus        38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~  117 (318)
T 4ggc_A           38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW  117 (318)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec
Confidence            56677899999999999999887753   345665544445567888899999999999988885555444444444444


Q ss_pred             cc
Q 033675          110 RG  111 (114)
Q Consensus       110 ~~  111 (114)
                      .+
T Consensus       118 ~~  119 (318)
T 4ggc_A          118 NS  119 (318)
T ss_dssp             ET
T ss_pred             CC
Confidence            33

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.06  E-value=0.0036  Score=45.02  Aligned_cols=65  Identities=17%  Similarity=0.335  Sum_probs=51.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec----------CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM----------GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt----------GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ..+..+|++.+|.||.+|..+|+..|++..          +.++.++..+.+...|+-..+. .||.-+..-||.+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g-~l~a~d~~tG~~~  126 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKA-QVYALNTSDGTVA  126 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTS-EEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCC-EEEEEECCCCCEE
Confidence            567788999999999999999999999998          4556666555566667765543 7888888888873

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.75  E-value=0.0016  Score=52.86  Aligned_cols=53  Identities=26%  Similarity=0.335  Sum_probs=40.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeec--CCCCceeeeCCcc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR--NDPDFYVDVGEDW   81 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA--~~~~~fidcgdDW   81 (114)
                      ..++++|++.||+||.+|..+|++.|+|..|+++.++-..  .+..-|+-+.+.|
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~  528 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV  528 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence            4688999999999999999999999999999988755333  2333455554443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.68  E-value=0.0037  Score=46.89  Aligned_cols=41  Identities=20%  Similarity=0.354  Sum_probs=37.6

Q ss_pred             CceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC
Q 033675           31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP   71 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~   71 (114)
                      +..++++.||+|+.+|..+|+..|++..++|+.++|...+.
T Consensus       174 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~d  214 (369)
T 2hz6_A          174 MSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQRE  214 (369)
T ss_dssp             CCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTS
T ss_pred             ceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCC
Confidence            67889999999999999999999999999999999887644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.60  E-value=0.0077  Score=48.87  Aligned_cols=68  Identities=12%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCC-----CeeeeeecCCCCceeeeCC-----cceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVGE-----DWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGs-----PIYSSYqA~~~~~fidcgd-----DW~LY~h~~~~GK~kl~   96 (114)
                      ..+.++|++.||.||.+|..+|++.|++..+.     .+.++=.+.+...|+-+..     |-.+|..+..-||.+-.
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            56788999999999999999999999999876     3333322224445666553     78999999999998543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.52  E-value=0.037  Score=38.67  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=55.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-------CCCeeeeeecCCCCceeeeCCc---ceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-------GKPIYSSFTRNDPDFYVDVGED---WKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-------GsPIYSSYqA~~~~~fidcgdD---W~LY~h~~~~GK~kl~   96 (114)
                      .. ..++++.||+|+++|..++++.+.|..       ..+|.+-.-.|+...++-+++|   -.+++.+...|+....
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~  273 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS  273 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence            44 788889999999999999999999998       8888876544566677888888   9999999888876333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.48  E-value=0.0088  Score=49.39  Aligned_cols=68  Identities=13%  Similarity=0.062  Sum_probs=50.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC-C-----CeeeeeecCCCCceeeeCC-----cceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-K-----PIYSSFTRNDPDFYVDVGE-----DWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG-s-----PIYSSYqA~~~~~fidcgd-----DW~LY~h~~~~GK~kl~   96 (114)
                      ..+..+|++.||+||.+|..+|++.|+|..+ .     ++.++-.+.+...|+-.+.     |=.+|.-|..-||.+-.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            5778999999999999999999999999987 2     3333222224444554432     67899999999998543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.46  E-value=0.0028  Score=51.83  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=34.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS   65 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS   65 (114)
                      ..+++++++.||.|+.+|..+||.+|+|..++.+.++
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~  532 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence            5789999999999999999999999999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.058  Score=36.53  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=53.4

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEee-cCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFS-tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....++++.||+|++++..+++....+. ...+|.+---.++...++-++.|=.++.-+..-|+..
T Consensus        42 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           42 KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            355677888899999999999999999997 4567766544445667888999989999888888773

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.44  E-value=0.036  Score=37.94  Aligned_cols=65  Identities=12%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             CCCceEEEee-------CCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCC-ceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATL-------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatl-------DGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..+..+|++.       +|+|+++|..++++.+.+..+....+.--.++.. .|+-..+|=+++.-+..-|+.
T Consensus        51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  123 (353)
T 3vgz_A           51 QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV  123 (353)
T ss_dssp             TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee
Confidence            4456677763       6799999999999999999876544332223333 577777777888888888876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.42  E-value=0.061  Score=36.10  Aligned_cols=66  Identities=14%  Similarity=0.049  Sum_probs=51.2

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++++.||+|+++|..++++...+...+++.+---.|+...++-+++|=.+++-+..-++.
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            356678888999999999999999999999999988653334545566666677777777766665

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.41  E-value=0.011  Score=42.81  Aligned_cols=61  Identities=10%  Similarity=0.120  Sum_probs=43.9

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCC--CeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGs--PIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .++.++++-||+|+++|..+|++.|+|..+.  ..++....|+...++ +++ =.++.-+. -||.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~-~~V~~~d~-~G~~   67 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYS-KGAKMITR-DGRE   67 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECB-SEEEEECT-TSCE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCC-CCEEEECC-CCCE
Confidence            3566667789999999999999999999986  345554445445666 443 35777776 5665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.07  Score=36.13  Aligned_cols=64  Identities=6%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCc-----ceEeeeeccccc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED-----WKLYFHRKGIGK   92 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdD-----W~LY~h~~~~GK   92 (114)
                      .....++++.||+|++++..+++....+..+.++.+---.++...++-+++|     -.+++.+...++
T Consensus        85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            4567788899999999999999999999999999877555566677777776     666666655553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.26  E-value=0.082  Score=35.47  Aligned_cols=67  Identities=12%  Similarity=0.011  Sum_probs=52.8

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....++++.||+|++++..++++...+.. .+++.+---.|+...++-++.|-.++..+..-|+..
T Consensus       151 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            3566788899999999999999999999974 556665433335567888889999999998888763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.24  E-value=0.0043  Score=51.36  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY   63 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY   63 (114)
                      ..+++++++.||+|+++|..+||++|+|..++.+.
T Consensus       485 agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~  519 (689)
T 1yiq_A          485 AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM  519 (689)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence            67799999999999999999999999999987776

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.11  E-value=0.09  Score=35.60  Aligned_cols=65  Identities=12%  Similarity=0.148  Sum_probs=51.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++|+.||+|.++|..++++...+..+.++.+..- +++..++-++.|=.+++.+..-++.
T Consensus       225 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          225 PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF-SPNRYWLCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE-CSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec-CCCCceeeccCCCEEEEEECCCCeE
Confidence            3556777889999999999999999999999998876543 4556677778887787777665544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.10  E-value=0.014  Score=48.34  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=49.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCe--eeeeecC---CCCceeeeC-----CcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPI--YSSFTRN---DPDFYVDVG-----EDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPI--YSSYqA~---~~~~fidcg-----dDW~LY~h~~~~GK~kl   95 (114)
                      ..+.++|++.||+||.+|..+|++.|++..+ .+-  |....+|   ++..|+-++     .|=.+|.-|..-||.+-
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            5678899999999999999999999999986 221  2221222   344455443     36789999999999843

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.09  E-value=0.07  Score=36.59  Aligned_cols=62  Identities=29%  Similarity=0.525  Sum_probs=46.6

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCceeeeCCcceEeeeecccccee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .+...|++.+|.||.++.. |+..|++..+.++.++-... +...|+ +..+=.||.-+.. |+..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~~~~l~~~d~~-g~~~  169 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSNDNYLYAINPD-GTEK  169 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECTTSEEEEECTT-SCEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcCCCEEEEECCC-CCEe
Confidence            6778889999999999999 99999999887765443333 444555 3445688888888 8763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.03  E-value=0.085  Score=38.26  Aligned_cols=70  Identities=13%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccceeeecc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMK   98 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~~   98 (114)
                      .+...++++.||+|+++|..++++...|.. ..+|++-.-.++...++-++.|=.+++.+..-|+......
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            456788999999999999999999999974 4567665444455678888999999999998888744443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.00  E-value=0.11  Score=38.04  Aligned_cols=66  Identities=17%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             eEEEeeCCeEEEEeCCCCeeeEEeec---CCCeeeeeecCCCCceeeeCCcceEeeeeccccceeeecc
Q 033675           33 ALVATLNGTVHLVDTKRGESRWSFSM---GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMK   98 (114)
Q Consensus        33 aLVatlDGTiYLVd~~s~r~~WSFSt---GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~~   98 (114)
                      .|.+++|++||+|+..+|++.-.+.-   +.+|.+--=.|+..+++-++.|=.+.+-+..-|+....+.
T Consensus       118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~  186 (420)
T 4gga_A          118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  186 (420)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence            46677899999999999998887753   3456554223355667788889888888888887744443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.0054  Score=48.66  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=31.4

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI   62 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI   62 (114)
                      ..+++++++.||++|.+|..+|+++|+|+.|.|.
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~  143 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKN  143 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBC
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCc
Confidence            5788999999999999999999999999999763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.92  E-value=0.095  Score=35.31  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=47.0

Q ss_pred             ceEEEeeCCeEEEEeCCCCeeeEEeecCC----CeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           32 LALVATLNGTVHLVDTKRGESRWSFSMGK----PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s~r~~WSFStGs----PIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..++++.||+|+++|..++++.+++..+.    |..-.+....+..|+-+.++-+++.-+..-|+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~   68 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET   68 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe
Confidence            45677889999999999999999998765    433333222334578888888999988887876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.82  E-value=0.17  Score=34.37  Aligned_cols=65  Identities=17%  Similarity=0.060  Sum_probs=46.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCC--CeeeeeecC-CCC-ceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK--PIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGs--PIYSSYqA~-~~~-~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....++++-||+|+++|..+++..+.+..+.  ...+ .+.. +.. .|+-..++-+++.-+..-|+..
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGT-AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCE-EEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCce-eEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            34445556789999999999999999998775  3222 2333 333 5777778889999988877763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.81  E-value=0.069  Score=36.29  Aligned_cols=66  Identities=14%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC---CCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN---DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~---~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++++.||+|+++|..+++..+......++.+---.|   +...++-++.|-.+++.+..-++.
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence            466778888999999999999999999999889988764444   456677788888888887766554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.80  E-value=0.14  Score=34.61  Aligned_cols=66  Identities=12%  Similarity=0.071  Sum_probs=54.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeee--cCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT--RNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYq--A~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++++.||+|.+++..+++....+....++.+---  .++...++-++.|=.+++-+..-|+.
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            3556778889999999999999999999888889886643  23445688899999999999888876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.77  E-value=0.033  Score=46.37  Aligned_cols=64  Identities=14%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             eEEEeeCCeEEEEeCCCCeeeEEeecCC-----CeeeeeecCCCCceeeeC-----CcceEeeeeccccceeee
Q 033675           33 ALVATLNGTVHLVDTKRGESRWSFSMGK-----PIYSSFTRNDPDFYVDVG-----EDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        33 aLVatlDGTiYLVd~~s~r~~WSFStGs-----PIYSSYqA~~~~~fidcg-----dDW~LY~h~~~~GK~kl~   96 (114)
                      ++|++.||.||.+|..+|++.|++..+.     .+.++=.+.+...|+-++     -|=.+|..+..-||.+-.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence            8999999999999999999999998876     233322222444455443     367899999999998543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.77  E-value=0.0094  Score=49.63  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=33.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS   64 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS   64 (114)
                      ..+++++++.||.|+.+|..+||.+|+|..++.+.+
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~  518 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG  518 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence            578899999999999999999999999999887764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.73  E-value=0.14  Score=34.80  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=53.6

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEee-cCCCeeeeeecC-CCCceeeeCCcceEeeeeccccceeee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFS-tGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      ....++|+.||+|.+++..++++...|. ...+|.+---.| +...++-+++|=.+++.+..-|+....
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence            3467888999999999999999999998 566777654344 556788889999999999888877443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.67  E-value=0.063  Score=38.82  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .++.++..-||+|+.+|.+ |+..|+|..+...|++-..++...++-+.++=+++.-+..-||.
T Consensus       136 G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          136 GNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            3444444568999999998 99999999987777765554444455444343688888887887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.54  E-value=0.013  Score=48.39  Aligned_cols=36  Identities=19%  Similarity=0.453  Sum_probs=32.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS   64 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS   64 (114)
                      ..+++++++.||+++.+|..+|+++|+|..++.+.+
T Consensus       487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~  522 (677)
T 1kb0_A          487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA  522 (677)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence            567899999999999999999999999999987764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.54  E-value=0.12  Score=36.58  Aligned_cols=68  Identities=10%  Similarity=0.109  Sum_probs=54.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEee-cCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFS-tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      +.....+.|+.||+|.++|..+++....|. ...+|.+---.|+...++-++.|-.+.+.+..-|+...
T Consensus       149 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            356678889999999999999999998886 35667665444456678899999999999988887743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.52  E-value=0.24  Score=35.82  Aligned_cols=65  Identities=9%  Similarity=-0.110  Sum_probs=48.7

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec--CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM--GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt--GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +...+.++.||+|++++..+++....+..  +++|.+---.++...++-++.|=.++..+..-|+..
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  169 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL  169 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE
Confidence            45678899999999999999999888876  667776533344455666667777877777767653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.45  E-value=0.033  Score=45.79  Aligned_cols=67  Identities=25%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe--eeeeecC---CCCceeeeCC-----cceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI--YSSFTRN---DPDFYVDVGE-----DWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI--YSSYqA~---~~~~fidcgd-----DW~LY~h~~~~GK~kl   95 (114)
                      ..+.++|++.||+||.+|..+|++.|++..+.+-  |..-.+|   +...|+-++.     |=.+|.-|..-||.+-
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence            5678899999999999999999999999986431  2111222   3344555432     4579999999999843

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.44  E-value=0.014  Score=47.94  Aligned_cols=36  Identities=28%  Similarity=0.590  Sum_probs=33.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS   64 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS   64 (114)
                      ..+++++++.||.|+.+|..+|+++|+|..++.+.+
T Consensus       468 ~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~  503 (668)
T 1kv9_A          468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVA  503 (668)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCCEEEEECCcccchhhhhhcChhheEecCCCCccc
Confidence            678899999999999999999999999999987764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.36  E-value=0.27  Score=34.30  Aligned_cols=71  Identities=23%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             CCCCCceEEEeeC---CeEEEEeCCCCeeeEEeec--------------CCCeeeeeecCCCCceeeeCCcceEeeeecc
Q 033675           27 PESGDLALVATLN---GTVHLVDTKRGESRWSFSM--------------GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKG   89 (114)
Q Consensus        27 ~~~~~taLVatlD---GTiYLVd~~s~r~~WSFSt--------------GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~   89 (114)
                      ++.....++++.|   |+|+++|..++++...+..              ..+|.+-.-.++...++-++.|=.+++.+..
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            3456778889999   9999999999999999974              6677765444556678888889999999988


Q ss_pred             ccceeeec
Q 033675           90 IGKMKDIM   97 (114)
Q Consensus        90 ~GK~kl~~   97 (114)
                      -|+.....
T Consensus       322 ~~~~~~~~  329 (397)
T 1sq9_A          322 TKERITTL  329 (397)
T ss_dssp             TTEEEEEE
T ss_pred             CCceeEEE
Confidence            88774333

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.32  E-value=0.36  Score=33.84  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             CCCceEE-EeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCC-ceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALV-ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLV-atlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....+| ++.||+|+++|..++++.+.+..+.++.+---.|+.. .|+-+.+|=.++.-+..-|+.
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~  108 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence            3333434 4489999999999999999999998776543233333 356666778899998888876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.19  E-value=0.13  Score=34.93  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEe----ecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSF----SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSF----StGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .+...++++.||+|+++|..+++....+    ....+|.+---.++...++-++.|=.+++.+..-|+.
T Consensus       127 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  195 (366)
T 3k26_A          127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM  195 (366)
T ss_dssp             CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH
T ss_pred             CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc
Confidence            5567788889999999999999999998    4566777654444556788888998999888877665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.17  E-value=0.044  Score=44.78  Aligned_cols=66  Identities=15%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe--eeeeecC---CC------CceeeeC-----CcceEeeeeccccc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI--YSSFTRN---DP------DFYVDVG-----EDWKLYFHRKGIGK   92 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI--YSSYqA~---~~------~~fidcg-----dDW~LY~h~~~~GK   92 (114)
                      ..+.++|++.||.||.+|..+|++.|++..+.+.  |....+|   +.      ..|+-+.     .+=.+|..|..-||
T Consensus       116 ~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          116 YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            5778899999999999999999999999887642  2222222   22      2344432     36689999999999


Q ss_pred             ee
Q 033675           93 MK   94 (114)
Q Consensus        93 ~k   94 (114)
                      .+
T Consensus       196 ~~  197 (582)
T 1flg_A          196 EI  197 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.17  Score=34.90  Aligned_cols=66  Identities=18%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEee-cCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFS-tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      .....++++.||+|++++..++++...+. ...+|.+-.-.++. .++-++.|-.+++-+..-|+...
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence            45577888899999999999999999996 45566654333344 88889999999999988887643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.08  E-value=0.24  Score=33.82  Aligned_cols=66  Identities=17%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             CCCCceEEEeeC-CeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLN-GTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlD-GTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +..+..+|++.+ |+|+++|..++++.+.+..+.|..-.+....+..|+-+.+|=.++.-+..-|+.
T Consensus       240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            345556777655 999999999999999999998854333322333688887777888888877776

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.04  E-value=0.15  Score=36.67  Aligned_cols=65  Identities=9%  Similarity=-0.077  Sum_probs=52.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec---CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM---GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt---GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....++++.||+|+++|..++++.+.+..   .++|.+---.|+...++-++.|-.+.+-+.+.|+.
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  248 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL  248 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence            467888899999999999999999999985   46777654334556678888898888888887776

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.04  E-value=0.057  Score=36.76  Aligned_cols=52  Identities=8%  Similarity=0.052  Sum_probs=39.8

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec--CCCeeeeeecCCCCceeeeC-Ccc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM--GKPIYSSFTRNDPDFYVDVG-EDW   81 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt--GsPIYSSYqA~~~~~fidcg-dDW   81 (114)
                      +.....++++.||+|+++|..++++...+..  +++|.+--  ++...++-++ |.|
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            3566778889999999999999999999987  67887764  6555555544 444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.00  E-value=0.35  Score=35.23  Aligned_cols=62  Identities=10%  Similarity=0.033  Sum_probs=39.1

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ++..++++.||+|+++|..+++..+.+.. ..++.+- +. +...++-+++|=.+++.+..-|+.
T Consensus       209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~-~~-~~~~l~~~~~dg~i~iwd~~~~~~  271 (445)
T 2ovr_B          209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-QY-DGRRVVSGAYDFMVKVWDPETETC  271 (445)
T ss_dssp             TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE-EE-CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE-EE-CCCEEEEEcCCCEEEEEECCCCcE
Confidence            45566777777777777777777777753 2333322 22 445566667777777777666655

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.22  Score=33.08  Aligned_cols=61  Identities=10%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             ceEEEeeCCeEEEEeCCCCeeeEEeecCC-CeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           32 LALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..++++.||+|+++|..++++...+.... +|.+- ...+++-++-++.|=.+++-+..-|+.
T Consensus       238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          238 DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV-DCMSNGDIIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE-EECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred             CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE-EEccCCCEEEEeCCCcEEEEeCCCCce
Confidence            57788999999999999999999998765 66654 344443477799999999988887776

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.11  Score=36.70  Aligned_cols=64  Identities=8%  Similarity=0.010  Sum_probs=47.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeee-EEeec--CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESR-WSFSM--GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~-WSFSt--GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ......+|+.||+|.++|..+++.. -.|..  .+||.+---.|+...++-++|| .+.+-+.+.++.
T Consensus       181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~  247 (343)
T 3lrv_A          181 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVG  247 (343)
T ss_dssp             TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTT
T ss_pred             CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCc
Confidence            4455556689999999999999987 77766  6778765333344556777788 999999888875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.81  E-value=0.43  Score=33.38  Aligned_cols=67  Identities=12%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ++.....+.|+.||+|.+++..+++..-++.. ..|+.+.--.++...++-+++|=.+.+-+..-|+.
T Consensus        22 sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           22 HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence            34566788899999999999999999998874 45666553344556788888998888888777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=94.75  E-value=0.43  Score=32.36  Aligned_cols=61  Identities=10%  Similarity=0.018  Sum_probs=45.4

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CC-CceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~-~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....+++  +|+|+++|..+++....+..+..+++- ..+ +. ..|+ .+.|-++++.+..-|+.
T Consensus       266 dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~-~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          266 DPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCV-AFDKKGDKLYL-GGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             CTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEE-EECSSSSCEEE-ESBSSEEEEEETTTTEE
T ss_pred             CCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccce-EECCCCCEEEE-ecCCCeEEEEeccccce
Confidence            44455555  999999999999999999887766543 333 33 3466 67788999999888876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=94.69  E-value=0.44  Score=34.49  Aligned_cols=67  Identities=13%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCeeeeeecCCCCceeeeCCcceEeeeeccccceeeec
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIM   97 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~   97 (114)
                      .....++++.||+|+++|..++++..+|... .++. +...+ +..++-+++|=.+.+-+..-++.....
T Consensus       321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG-LLRLS-DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEC-SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEE-EEEEc-CCEEEEEeCCCcEEEEECCCCceeeee
Confidence            5567888999999999999999999999643 3443 33333 467888889988888888877764443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.60  E-value=0.31  Score=35.45  Aligned_cols=65  Identities=14%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      .+...++|+.||+|+++|..++++..++... .++++- +. +...++-++.|=.++..+..-|+...
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~-~~~~l~~~~~d~~i~i~d~~~~~~~~  313 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QF-DGIHVVSGSLDTSIRVWDVETGNCIH  313 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE-EE-CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE-EE-CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            4567788899999999999999999998743 445432 33 55567777788888888887777643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.58  E-value=0.76  Score=32.18  Aligned_cols=64  Identities=17%  Similarity=0.198  Sum_probs=47.8

Q ss_pred             CCCceEEEe-eCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCC-ceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVat-lDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....++++ .||+|+++|..++++...+..+..+++- ... +.. .|+-+++|=.+++.+..-|+.
T Consensus        84 dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL-ALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE-EECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceE-EECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            334344444 6799999999999999999988877544 343 333 457888888999999888776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.57  E-value=0.17  Score=34.21  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=39.5

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeee-CCcce
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDV-GEDWK   82 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidc-gdDW~   82 (114)
                      ++.....++++.||+|+++|..+++....|.. ..+|.+--=.|+...++-+ +|||.
T Consensus       282 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~  339 (368)
T 3mmy_A          282 HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWS  339 (368)
T ss_dssp             CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred             ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccc
Confidence            34566788899999999999999999999986 5666654333344444444 44553

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.57  E-value=0.7  Score=31.66  Aligned_cols=68  Identities=24%  Similarity=0.360  Sum_probs=51.1

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC----eeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP----IYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ++.....++++.||+|.++|..+++....|.....    +...+..++..+++-+++|=.+++.+..-++..
T Consensus       201 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence            34566788899999999999999999998864332    333334445566788889989999888877763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.53  E-value=0.62  Score=30.91  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=50.2

Q ss_pred             eEEEeeCCeEEEEeCCCCeeeEEee-cCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           33 ALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        33 aLVatlDGTiYLVd~~s~r~~WSFS-tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      .++++.||+|+++|..++++...+. ..++|.+- +..+++.++-++.|=.+++.+..-|+...
T Consensus       198 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          198 FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI-KLLPNGDIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE-EECTTSCEEEEETTSEEEEECTTTCCEEE
T ss_pred             EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE-EEecCCCEEEEecCCEEEEEECCCCceeE
Confidence            7788999999999999999999997 45566654 44444468899999999999988888743

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.53  E-value=0.27  Score=34.73  Aligned_cols=67  Identities=9%  Similarity=0.004  Sum_probs=52.4

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecC--CCeeeeeecCCCC-ceeeeCCcceEeeeeccccce
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMG--KPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStG--sPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ++.....++++.||+|+++|..+++....+..+  .++.+---.|+.. .++-+++|-.+++.+..-|+.
T Consensus       256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            346667888999999999999999999999764  5666553333444 688888999999999888754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.40  E-value=0.3  Score=33.63  Aligned_cols=67  Identities=13%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEee--------------cCCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFS--------------MGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFS--------------tGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....+.++.||+|.+++..+++....+.              ...+|.+---.| +...++-++.|=.+...+..-|+.
T Consensus        55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  134 (408)
T 4a11_B           55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT  134 (408)
T ss_dssp             TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence            56777888899999999999998888876              666777654444 446788999999999999888876


Q ss_pred             ee
Q 033675           94 KD   95 (114)
Q Consensus        94 kl   95 (114)
                      ..
T Consensus       135 ~~  136 (408)
T 4a11_B          135 AD  136 (408)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.29  E-value=0.47  Score=34.56  Aligned_cols=67  Identities=13%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....+.|+.||+|.++|..+++..-.+.. ..+|++---.|+...++-++.|..+.+-+..-|+..
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence            3456677788999999999999998887763 456665533345567889999999998888877753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.26  E-value=0.55  Score=34.32  Aligned_cols=66  Identities=12%  Similarity=0.081  Sum_probs=50.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      .++..++|+.||+|.++|..++++..++... .++.+ .+. +...++-++.|=.+++.+...|+....
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQY-RDRLVVSGSSDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE-EEE-ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEE-EEe-CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            4567788999999999999999999999743 44443 233 445778888898999999888876433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=94.24  E-value=0.51  Score=32.54  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=51.9

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....++++.||+|++++ .+++....+.. ..+|.+-.-.++...++-++.|=.++..+..-|+..
T Consensus       118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            3566778889999999999 78889999874 566766644456667888999999999888888763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.24  E-value=0.36  Score=33.00  Aligned_cols=60  Identities=18%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeec-CCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-NDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA-~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.+..+|++.||.||.++.. |+..|.+..+.+..++-.. ++...|+-.   =.||.-+ .-|+.
T Consensus       146 ~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~  206 (330)
T 3hxj_A          146 EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE  206 (330)
T ss_dssp             TTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE
T ss_pred             CCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE
Confidence            46778899999999999999 9999999877665444333 344445544   4566666 45554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.15  E-value=0.73  Score=33.65  Aligned_cols=65  Identities=11%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      ..+..++|+.||+|.+++..+++..+.+.. .++|.+- +. +...++-++.|=.+.+.+..-|+...
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l-~~-~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-QY-DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE-EC-CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEE-EE-CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            455677889999999999999999999973 3455432 33 55677888888888888877777633

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.10  E-value=0.9  Score=32.56  Aligned_cols=64  Identities=16%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             CceEEEeeCCeEEEEeCCCCeeeEEee---cCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           31 DLALVATLNGTVHLVDTKRGESRWSFS---MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~~WSFS---tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ...+.++.||+|.++|..+++....+.   ...+|.+---.++...++-++.|-.+++.+..-|+..
T Consensus       145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            567788999999999999999999993   3456665533345567888889999999998888773

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.04  E-value=0.29  Score=35.55  Aligned_cols=58  Identities=19%  Similarity=0.159  Sum_probs=45.9

Q ss_pred             ceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC--CCCceeeeCCcceEeeeeccc
Q 033675           32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGI   90 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~--~~~~fidcgdDW~LY~h~~~~   90 (114)
                      ....++.||+|+++|..++++...+.-..+|.+- +.+  +...++-|+.|=.+++++...
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~v-afsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV-AWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECCCSSCEEEE-EECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEE-EEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            4456789999999999999999988777788764 433  445688999999999988644

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.99  E-value=0.75  Score=33.21  Aligned_cols=68  Identities=10%  Similarity=0.084  Sum_probs=49.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeee-C--CcceEeeeeccccceee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDV-G--EDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidc-g--dDW~LY~h~~~~GK~kl   95 (114)
                      +.....++++.||+|+++|..++++...+.. ..++.+---.|+...++-+ +  .|=.+++.+..-|+...
T Consensus       227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence            3566788889999999999999999999964 4455544333334444444 3  58899999988887743

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.92  E-value=1  Score=31.00  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=52.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC---CceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP---DFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~---~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....+.++.||+|.+++..++++...+....++++..-.+..   ..++-++.|-.++..+..-|+.
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            4456778888999999999999999999999998876544422   3677788888888888777765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=93.82  E-value=0.48  Score=33.49  Aligned_cols=52  Identities=13%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED   80 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdD   80 (114)
                      +.....+.++.||+|.++|..++++...+....++++- +.++++.++-++.+
T Consensus       206 p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~  257 (319)
T 3frx_A          206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL-AFSPNRYWLAAATA  257 (319)
T ss_dssp             TTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE-EECSSSSEEEEEET
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE-EEcCCCCEEEEEcC
Confidence            35566777889999999999999999999998888765 55555555555444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=93.75  E-value=0.72  Score=30.97  Aligned_cols=60  Identities=15%  Similarity=0.056  Sum_probs=42.2

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCC-ceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+++  ||+|+++|..+++..+.+..+..+++- ... +.. .|+ ++.|=++++-+..-|+.
T Consensus       252 g~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~-~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          252 KTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSV-NVSTDGSTVWL-GGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEE-EECTTSCEEEE-ESBSSEEEEEETTTCCE
T ss_pred             CCEEEEe--CCeEEEEECCCCcCcceecCCCceeeE-EECCCCCEEEE-EcCCCcEEEEECcCCcE
Confidence            3344444  899999999999999999988766543 333 333 355 45566788888777775

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.74  E-value=1.1  Score=30.71  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=50.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.++.||+|.++|..+++....|... .||.+-.-.++...++-++.|=.+.+.+...|+.
T Consensus       117 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  183 (312)
T 4ery_A          117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  183 (312)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence            35567788899999999999999999998753 5666543333556678888887888888777765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.71  E-value=0.58  Score=34.34  Aligned_cols=67  Identities=12%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC-CCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....+.|+.||+|.++|..++++.-.|.. ..+|++---.+ +...++-|++|=.+.+-+.+-|+..
T Consensus       137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  205 (344)
T 4gqb_B          137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA  205 (344)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee
Confidence            3556677889999999999999999999974 45666542223 3356889999999999888888763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.71  E-value=0.56  Score=34.55  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=52.3

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEe-----ecCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSF-----SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSF-----StGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ....++++.||+|++++..++++...+     ....+|.+-.-. +...++-++.|=.+.+-+..-|+..
T Consensus       219 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            567788899999999999999999999     567788765333 6677888888988888888877763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.67  E-value=1.3  Score=31.68  Aligned_cols=67  Identities=15%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....++++.||+|.++|..++++.-.+.. ..||.+---.|+...++-+++|=.+.+-+..-++..
T Consensus       174 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          174 PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence            4566778889999999999999999998864 456766533345567788888988888887776653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=93.61  E-value=0.7  Score=33.51  Aligned_cols=66  Identities=14%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC-CC-CceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DP-DFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~-~~-~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....+.|+.||+|.++|..++++...|.. ..++++- +.+ +. ..++-+++|=.+.+-+..-|+..
T Consensus       149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v-~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~  217 (357)
T 4g56_B          149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV-AACPGKDTIFLSCGEDGRILLWDTRKPKPA  217 (357)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-EECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE-EEccCCCceeeeeccCCceEEEECCCCcee
Confidence            3556677789999999999999999999975 3455543 333 33 46889999988888888877763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.60  E-value=0.53  Score=33.16  Aligned_cols=62  Identities=13%  Similarity=0.119  Sum_probs=50.9

Q ss_pred             ceEEEeeCCeEEEEeCCC----CeeeEEeecCCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           32 LALVATLNGTVHLVDTKR----GESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s----~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..+.++.||+|.++|..+    +++.-.+....++.+---.| +...++-++.|=.+++.+..-|+.
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            788889999999999988    78888888888888764444 556788888899999998887765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.50  E-value=0.61  Score=31.74  Aligned_cols=65  Identities=9%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCC--CCeeeEEeec-CCCeeeeeecCC--CCceeeeCCcceEeeeeccccc
Q 033675           28 ESGDLALVATLNGTVHLVDTK--RGESRWSFSM-GKPIYSSFTRND--PDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~--s~r~~WSFSt-GsPIYSSYqA~~--~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      +.....++|+.||+|++++..  +++....+.. ..+|.+---.++  ...++-++.|-.+.+-+..-|+
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            345677788899999999877  7788877763 467765533344  5778899999999988888886

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=93.39  E-value=0.48  Score=34.60  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecC--CCeeeeeecCCCCceeeeCCcceEeeeec
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMG--KPIYSSFTRNDPDFYVDVGEDWKLYFHRK   88 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStG--sPIYSSYqA~~~~~fidcgdDW~LY~h~~   88 (114)
                      ++...+..+|+.||+|.++|..+++++-.|-.|  .+|++--=-|+...++-+.+|=.+-.++.
T Consensus       278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          278 DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            345566777899999999999999999998654  67776422335567889999988877774

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.37  E-value=0.85  Score=33.25  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ++.....++|+.||+|.++|..+++....+......-.+... +...+.-++.|..++.++......
T Consensus       156 spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee-CCCEEEEEeCCCceeEeeecccce
Confidence            345677888999999999999999999998754443333332 445677788888888887765544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.35  E-value=0.4  Score=32.83  Aligned_cols=64  Identities=19%  Similarity=0.187  Sum_probs=48.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCC-CeeeeeecCCCCceeeeCCcceEeeeeccc--cc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGI--GK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSSYqA~~~~~fidcgdDW~LY~h~~~~--GK   92 (114)
                      +.....++++.||+|+++|..++++...|.... ++.+- +..+++-++-+|.|=.+++.+..-  |+
T Consensus       212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~i~~~~~~~~~  278 (372)
T 1k8k_C          212 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV-TFITESSLVAAGHDCFPVLFTYDSAAGK  278 (372)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE-EEEETTEEEEEETTSSCEEEEEETTTTE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE-EEecCCCEEEEEeCCeEEEEEccCcCce
Confidence            355678888999999999999999999998664 66544 444444567777887777777666  54

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.32  E-value=1.1  Score=31.71  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=49.8

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.|+.||+|.++|..+++..-.|.. ..+|.+-.-.|+...++-+++|=.+.+.+..-++.
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            3455677888999999999999999988864 45666553334556788888898888888776665

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.28  E-value=0.67  Score=30.53  Aligned_cols=64  Identities=16%  Similarity=0.048  Sum_probs=48.7

Q ss_pred             CCceEEEeeCCeEEEEeCCCC---------eeeEEeec-CCCeeeeeecCC--CCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRG---------ESRWSFSM-GKPIYSSFTRND--PDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~---------r~~WSFSt-GsPIYSSYqA~~--~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....++|+.||+|.+++..++         ++...+.. .++|.+---.++  ...++-++.|-.+++.+..-++.
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence            567788899999999999887         55666653 456665544444  56788899999999999877664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.27  E-value=1.3  Score=30.22  Aligned_cols=65  Identities=11%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             CCCCceEEEee-CCeEEEEeCCCCee-eEEeecCCCeeeeeecCCC-CceeeeCCcc----eEeeeeccccce
Q 033675           28 ESGDLALVATL-NGTVHLVDTKRGES-RWSFSMGKPIYSSFTRNDP-DFYVDVGEDW----KLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatl-DGTiYLVd~~s~r~-~WSFStGsPIYSSYqA~~~-~~fidcgdDW----~LY~h~~~~GK~   93 (114)
                      +.....++++. |++|+.+|..++++ ...+..+..........+. ...+ +..+=    ++++.+..-|+.
T Consensus        49 ~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~  120 (331)
T 3u4y_A           49 SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKF  120 (331)
T ss_dssp             SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCe
Confidence            34455667766 88999999999998 7777776654442344433 3322 44444    788888887776

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=93.03  E-value=1.3  Score=30.94  Aligned_cols=63  Identities=6%  Similarity=-0.095  Sum_probs=48.6

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-------CCCeeeeeecCCC-CceeeeCCcc---eEeeeeccccc
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-------GKPIYSSFTRNDP-DFYVDVGEDW---KLYFHRKGIGK   92 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-------GsPIYSSYqA~~~-~~fidcgdDW---~LY~h~~~~GK   92 (114)
                      +...++++.||+|.++|..++++...+..       +.++.+---.|++ ..++-+++|-   .+++.+...++
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            45677778999999999999999999987       5667665333443 4677888887   88888887764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.93  E-value=0.67  Score=31.53  Aligned_cols=64  Identities=5%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEee-----cCCCeeeeeecCC---CCceeeeCCcceEeeeeccccc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFS-----MGKPIYSSFTRND---PDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFS-----tGsPIYSSYqA~~---~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      .....++++.||+|+++|..+++..|...     ..++|.+---.|+   ...++-++.|-.+++-+...|+
T Consensus       171 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             TTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            56788889999999999988877555443     2566765533334   4668888999988888877764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.92  E-value=1.6  Score=30.74  Aligned_cols=62  Identities=10%  Similarity=0.029  Sum_probs=47.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCC-ceeeeCCcceEeeeecccc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIG   91 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~G   91 (114)
                      .....++++.||+|+++|. ++++...+.. ..+|.+---.|+.. .++-|+.|-.+++-+...+
T Consensus       174 ~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  237 (383)
T 3ei3_B          174 SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI  237 (383)
T ss_dssp             TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred             CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence            5667888999999999998 6888888874 45565543333444 6889999999988888773

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=92.91  E-value=1.5  Score=29.96  Aligned_cols=67  Identities=9%  Similarity=-0.067  Sum_probs=49.2

Q ss_pred             CCCCceEEEeeCCeEEEEe------------------CCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeec
Q 033675           28 ESGDLALVATLNGTVHLVD------------------TKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRK   88 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd------------------~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~   88 (114)
                      +.....++++.||+|+++|                  ..++++.-.|.. ..++.+-.-.++...++-+++|=.+++-+.
T Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            3556777888999999999                  557888888853 445655433334557788888888998888


Q ss_pred             ccccee
Q 033675           89 GIGKMK   94 (114)
Q Consensus        89 ~~GK~k   94 (114)
                      .-|+..
T Consensus       232 ~~~~~~  237 (372)
T 1k8k_C          232 DKKMAV  237 (372)
T ss_dssp             GGTTEE
T ss_pred             CCCcee
Confidence            888763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.90  E-value=0.68  Score=33.99  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCC-CceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..+...|+.||+|.++|..++++..+|.. ..+|++---.|+. .+++-+++|-.+++-+...|+.
T Consensus       227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          227 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            34455678999999999999999999874 4566654222333 3567889999999888887775

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=92.82  E-value=1.4  Score=31.27  Aligned_cols=66  Identities=12%  Similarity=0.032  Sum_probs=47.7

Q ss_pred             CCCCceEEEee--------CCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC-CceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATL--------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatl--------DGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++++.        ||+|+++|..++++.+.+..+..+.+..-.++. ..|+-++.|=+++.-+..-|+.
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~  337 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV  337 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence            34556677774        899999999999999988655555443222333 3577778888999888887776

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=92.82  E-value=0.76  Score=32.41  Aligned_cols=65  Identities=11%  Similarity=-0.053  Sum_probs=46.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEee--cCCCeeeeeecCCC-CceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFS--MGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFS--tGsPIYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....+.++.||+|.++|..+++....+.  .+.++.+- +..+. ..+.-+++|=.+.+-+..-|+..
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~-~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG-VLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEE-EECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEE-EECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            45667779999999999999999977663  33445433 44444 45566688888888888877753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=92.80  E-value=0.88  Score=32.84  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             CCCCceEEEeeCCe-EEEEeCCCCeeeEEee---cCCCeeeeeecCCCCceeeeCCcceEeeeecccc
Q 033675           28 ESGDLALVATLNGT-VHLVDTKRGESRWSFS---MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIG   91 (114)
Q Consensus        28 ~~~~taLVatlDGT-iYLVd~~s~r~~WSFS---tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~G   91 (114)
                      +.....+.|+.||| |.++|..+++..-.|.   ...+|++---.|+...++-+++|=.+.+-+..-+
T Consensus       205 ~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          205 RKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            35566778899999 9999999999999998   4577876543445567888888866666665443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.74  E-value=1.3  Score=31.65  Aligned_cols=69  Identities=13%  Similarity=0.114  Sum_probs=50.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCC-------eeeEEee-cCCCeeeeeecCCC-CceeeeCCcceEeeeeccccceeeec
Q 033675           29 SGDLALVATLNGTVHLVDTKRG-------ESRWSFS-MGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMKDIM   97 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~-------r~~WSFS-tGsPIYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~kl~~   97 (114)
                      .....++|+.||+|.+++..++       ++...+. ...+|.+---.|+. ..++-++.|-.++..+..-|+.....
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            5567788889999999999888       5666665 34555544223333 47889999999999998888774443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.73  E-value=1.1  Score=32.68  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=50.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.++.||+|.++|..+++....+.....+.+.--.| +...++-++.|=.+.+-+..-|+.
T Consensus       175 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~  241 (393)
T 1erj_A          175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  241 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            355677888999999999999999999998887777654334 445677778887777777666654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=92.66  E-value=1.3  Score=29.95  Aligned_cols=67  Identities=9%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCe-eeEEeec--C---CCeeeeee---c-CCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGE-SRWSFSM--G---KPIYSSFT---R-NDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r-~~WSFSt--G---sPIYSSYq---A-~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....+.++.||+|.++|..+++ +...+..  |   .++++---   . ++...++-+++|=.+++.+..-++..
T Consensus       127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (357)
T 3i2n_A          127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR  203 (357)
T ss_dssp             -CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee
Confidence            345678888999999999999887 7777754  2   25654421   2 34456777788889999888888763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=92.65  E-value=2.2  Score=31.13  Aligned_cols=51  Identities=8%  Similarity=0.166  Sum_probs=37.3

Q ss_pred             CCCceEEEe--eCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC-CceeeeCCc
Q 033675           29 SGDLALVAT--LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGED   80 (114)
Q Consensus        29 ~~~taLVat--lDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~~fidcgdD   80 (114)
                      ......+|+  .||+|.++|..+++....+..+++|++- ..+|+ ..+.-+.+|
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v-~fspdg~~l~s~s~~  197 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDL-HFSTDGKVVAYITGS  197 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEE-EECTTSSEEEEECSS
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEE-EEccCCceEEeccce
Confidence            344445666  7999999999999999999999999865 44443 445555555

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.65  E-value=1.5  Score=31.00  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKG   89 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~   89 (114)
                      +.....+.|+.||+|.++|..+++..-.|.. ..++++----|+...++-++.|=.+.+-+..
T Consensus        86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            3456677889999999999999999988863 4567654333455678888888777777765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=92.63  E-value=0.64  Score=31.53  Aligned_cols=66  Identities=12%  Similarity=0.079  Sum_probs=51.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCe----eeEEeecCCCeeeeeecCCCC-ceeeeCCcceEeeeec-ccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGE----SRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRK-GIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r----~~WSFStGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~-~~GK~k   94 (114)
                      .....++++.||+|.+++..+++    +...+....+|.+-.-.++.. .++-++.|=.++..+. .-|+.+
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~   93 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE
Confidence            45667888899999999998888    788888888888764444556 6777888888888887 666653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.56  E-value=1.5  Score=29.19  Aligned_cols=40  Identities=18%  Similarity=0.197  Sum_probs=31.8

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeee
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF   66 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSY   66 (114)
                      ++.....+.|+.||+|.+++..+++....+........+.
T Consensus        76 ~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~  115 (318)
T 4ggc_A           76 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  115 (318)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             CCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence            4466778889999999999999999999987655544443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.53  E-value=1.1  Score=31.37  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCC-CceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....+.++.||+|+++|..++++.-.+.. ..++.+---.|+. ..++-+++|=.+.+.+..-++.
T Consensus       274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            567788889999999999999999999875 4556544333344 5788889998888888776665

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=92.49  E-value=0.71  Score=32.82  Aligned_cols=63  Identities=13%  Similarity=0.010  Sum_probs=44.2

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCC--CceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDP--DFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~--~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+.++.||+|++++..+++..+.+.. +.++.+ ...++.  ..|+-+.+|=.++.-+..-|+.
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI-LLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE-EEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE-EEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            34445566789999999999999999974 334433 233332  3466776777899888877766

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.35  E-value=2.2  Score=30.44  Aligned_cols=66  Identities=17%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....+.++.||+|.++|..+++...++..+..--.+.+.+ +...++-++.|=.+.+.+..-|+..
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~  157 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE  157 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence            44567788999999999999999999998765332233444 4455666677777777777766653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.05  E-value=2.3  Score=30.58  Aligned_cols=64  Identities=11%  Similarity=0.085  Sum_probs=48.2

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+.|+.||+|.++|..+++..-.|.. ..+|.+---.|+...++-+++|=.+.+-+.+-++.
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~  274 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE  274 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            45777889999999999999999988864 45566543334556788889998887777766654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=91.96  E-value=0.77  Score=32.92  Aligned_cols=66  Identities=17%  Similarity=0.063  Sum_probs=50.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEee--cCCCeeeeeecC----CCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFS--MGKPIYSSFTRN----DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFS--tGsPIYSSYqA~----~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++|+.||+|.++|..++++.-++.  ...+|.+-.-.|    +...++-+++|=.+++-+..-|+.
T Consensus       224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            356778889999999999999999988774  455676543222    223677888898899988888876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.88  E-value=2.3  Score=32.99  Aligned_cols=68  Identities=10%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEee-cCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFS-MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFS-tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ++.....++++-||+|.+++..+++...++. ..+||.+---.|+...++-+++|=.++.-+..-|+..
T Consensus        22 sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           22 HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            3456677888899999999999999999998 4556665433334456777788888888887777763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=91.67  E-value=0.75  Score=33.89  Aligned_cols=63  Identities=11%  Similarity=0.088  Sum_probs=49.8

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecC--CCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMG--KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStG--sPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+.|+.||+|++++..+++..-.|..|  +++.+- ..++...++-+++|=.+.+-+..-|+.
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~-~~sd~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI-CCGKDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE-EECSTTEEEEEESSSEEEEEETTTCCE
T ss_pred             CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE-EECCCCEEEEEeCCCeEEEEECCCCcE
Confidence            457888999999999999999998886544  556544 222566788899999999999888886

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=91.58  E-value=2.6  Score=29.80  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=47.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCC---CeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK---PIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGs---PIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.++.||+|.++|..+++....+....   +|.+- ..+ +...++-+++|=.+++-+..-++.
T Consensus       236 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~~d~~i~vwd~~~~~~  304 (340)
T 1got_B          236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE-EECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE-EECCCCCEEEEECCCCeEEEEEcccCcE
Confidence            456678889999999999999999999887544   44443 333 445667777787777777666655

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=91.53  E-value=0.69  Score=36.40  Aligned_cols=65  Identities=14%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.++.||+|.++|..+++...++..+++|.+. ..+++..++-++.|=.+.+-+...|+.
T Consensus       571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~~~~~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL-CFSPNRYWLCAATEHGIKIWDLESKSI  635 (694)
T ss_dssp             TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEE-EECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEE-EEcCCCcEEEEEcCCCEEEEECCCCCC
Confidence            35567778889999999999999999999999888765 445556666666665676666666654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=91.44  E-value=2.9  Score=30.07  Aligned_cols=66  Identities=24%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC--CCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~--~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....+.|+-||+|.++|..+++..=+|.. +.++.+---++  +...++-++.|=.++.-+..-|+..
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~  233 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV  233 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            445677899999999999999999988874 44555432223  2356888999999999888888763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=91.26  E-value=1  Score=29.62  Aligned_cols=64  Identities=8%  Similarity=0.076  Sum_probs=44.7

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEe----e-cCCCeeeeeecC--CCCceeeeCCcceEeeeecccc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSF----S-MGKPIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIG   91 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSF----S-tGsPIYSSYqA~--~~~~fidcgdDW~LY~h~~~~G   91 (114)
                      +.....++|+.||+|.+++..+++..|..    . ..++|.+-.-.+  +...++-++.|=.+.+.+..-|
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred             CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence            35567788899999999999887544443    2 456676553333  3567888888877777777665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.13  E-value=4.1  Score=31.62  Aligned_cols=66  Identities=11%  Similarity=0.014  Sum_probs=50.6

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....++++.||+|.+++..++++..++.. ..++.+.--.|+...++-++.|=.+++.+..-|+..
T Consensus       197 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             TCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            566788889999999999999999999974 445554433334456888888888888888877763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=91.12  E-value=1.3  Score=32.66  Aligned_cols=66  Identities=14%  Similarity=0.043  Sum_probs=50.4

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEee--cCCCeeeeeecC----------CCCceeeeCCcceEeeeeccccc
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFS--MGKPIYSSFTRN----------DPDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFS--tGsPIYSSYqA~----------~~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      ++.....++++.||+|++++..++++...+.  ...+|.+---.|          +...++-+++|=.+++.+..-|+
T Consensus       497 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  574 (615)
T 1pgu_A          497 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  574 (615)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             CCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence            3456677788899999999999999999986  466776553333          44567778888888888887773

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.00  E-value=3.6  Score=30.25  Aligned_cols=65  Identities=14%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ..+..+.|+.||+|.++|..+++..-+|......-.+...+ +...++-|+.|=.+.+-+..-|+.
T Consensus       203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~  268 (410)
T 1vyh_C          203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC  268 (410)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            55677889999999999999999988887544433334444 445688888887777777666655

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=90.86  E-value=0.87  Score=31.72  Aligned_cols=65  Identities=6%  Similarity=-0.054  Sum_probs=48.0

Q ss_pred             CCCceEEEeeCCeEEEEeCC------------------CCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccc
Q 033675           29 SGDLALVATLNGTVHLVDTK------------------RGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI   90 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~------------------s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~   90 (114)
                      .....++++.||+|.++|..                  .+++.-.|....+|.+---.|+...++-+++|-.+++.+..-
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            45677888999999999974                  467777776667777654344556788888898888888777


Q ss_pred             cce
Q 033675           91 GKM   93 (114)
Q Consensus        91 GK~   93 (114)
                      |+.
T Consensus       237 ~~~  239 (377)
T 3dwl_C          237 PEQ  239 (377)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.84  E-value=1.4  Score=31.17  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=45.6

Q ss_pred             CCCCceEEEeeCCeEEEEeC-CCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccc
Q 033675           28 ESGDLALVATLNGTVHLVDT-KRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~-~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      +.....+.|+.||+|.++|. ..+++.-.+..+.+|.+- +.++...++-+|.|=.+.+-+..-++
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v-~~sp~~~~la~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI-AFNPKLQWVAVGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEE-EECSSSCEEEEEESSCEEEEESSSCC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEE-EECCCCCEEEEECCCCEEEEEeCCCC
Confidence            45567778899999999998 667777788788887643 55566667778877666655544443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=90.31  E-value=2.9  Score=28.11  Aligned_cols=64  Identities=9%  Similarity=0.034  Sum_probs=47.9

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+.++.||+|.+++..++++.-.+.. .++|.+-.-.|+...++-++.|=.+.+-+...++.
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence            34456678999999999999999988863 45666543334556788888998888888777766

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=89.41  E-value=5  Score=29.47  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+.|+.||+|.++|..+++..-.+.. ..+|.+- ... +..+++-+++|=.+++-+..-|+.
T Consensus       308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v-~~~~~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE-EECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE-EEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence            55778899999999999999999998864 3345443 333 446788899998888888776665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=89.30  E-value=2.4  Score=27.34  Aligned_cols=61  Identities=7%  Similarity=0.089  Sum_probs=43.3

Q ss_pred             EeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccc-cceeeec
Q 033675           36 ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI-GKMKDIM   97 (114)
Q Consensus        36 atlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~-GK~kl~~   97 (114)
                      ++.|++|++++..++++...+..+.++.+. +.++++-++=++.|=.++.-+..- |+.+...
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~-~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~   79 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAP-NWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVD   79 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEE-EECTTSSEEEEEETTEEEEEESSSCCSCEECC
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEee-EECCCCCEEEEEcCCeEEEEeCCCCCCceEec
Confidence            357999999999999998777777777654 444444444444555899988877 7664433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.87  E-value=4.2  Score=33.75  Aligned_cols=65  Identities=6%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.++.||+|.+++..+++.........++.+. ...+++.++-++.|=.+++-+..-|+.
T Consensus      1013 ~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1013 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDF-RLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             SSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEE-EECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEE-EEcCCCcEEEEECCCcEEEEECCCCce
Confidence            35567778889999999999999998877777777654 455566788888998999888888876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=88.60  E-value=2.8  Score=29.62  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=43.7

Q ss_pred             CceEEEeeCCeEEEEeCCCCee----eEEeecCC-------------CeeeeeecCCCCceeeeCCcceEeeeeccc-cc
Q 033675           31 DLALVATLNGTVHLVDTKRGES----RWSFSMGK-------------PIYSSFTRNDPDFYVDVGEDWKLYFHRKGI-GK   92 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~----~WSFStGs-------------PIYSSYqA~~~~~fidcgdDW~LY~h~~~~-GK   92 (114)
                      ...++|+.||+|.++|..+++.    ...|....             +|.+- +.++++-++=++.+=.+++.+... |+
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~~~v~iwd~~~~~~  318 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV-KFSHSGRYMMTRDYLSVKVWDLNMENR  318 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE-EECTTSSEEEEEESSEEEEEETTCCSS
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEE-EECCCCCEEEEeeCCeEEEEeCCCCcc
Confidence            6888999999999999999887    67776654             56554 444444444444447888888775 55


Q ss_pred             e
Q 033675           93 M   93 (114)
Q Consensus        93 ~   93 (114)
                      .
T Consensus       319 ~  319 (447)
T 3dw8_B          319 P  319 (447)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=88.53  E-value=2.2  Score=29.66  Aligned_cols=65  Identities=2%  Similarity=-0.061  Sum_probs=37.1

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCe---eeEEe-ecCCCeeeeeecCCCCceeeeCCcceEeeeeccccc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGE---SRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r---~~WSF-StGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      +.....+.++.||+|.+++..+++   +.-.+ ....+|.+---.|+...++-+++|=.+++.+..-++
T Consensus        65 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C           65 PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence            345677888999999999998887   44444 344556554333355667778888777777766665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.01  E-value=6.7  Score=32.53  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC-CCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ......+|+.||+|.+++..+++...++.. ..+|.+- +.+ +...++-++.|=.+.+-+..-|+..
T Consensus       626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~~~d~~v~vwd~~~~~~~  692 (1249)
T 3sfz_A          626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC-AFSSDDSYIATCSADKKVKIWDSATGKLV  692 (1249)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE-EECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEE-EEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence            455667788999999999999999999874 3455443 444 4467888889988998888888763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=87.88  E-value=3.6  Score=31.84  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=45.5

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccc-----cceeee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI-----GKMKDI   96 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~-----GK~kl~   96 (114)
                      ++..++++.||+|+++|..++++.--...+..+.+ .+.+|.+-++=+..|-++|+.+..-     |+.+..
T Consensus        91 pd~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~  161 (706)
T 2z3z_A           91 GRGLVVLFTQGGLVGFDMLARKVTYLFDTNEETAS-LDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV  161 (706)
T ss_dssp             TTTEEEEEETTEEEEEETTTTEEEEEECCTTCCTT-CEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES
T ss_pred             CCCeEEEEECCEEEEEECCCCceEEccCCcccccC-CcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe
Confidence            34566677899999999999988765554444432 3445554455556778999999887     776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=87.50  E-value=4.6  Score=29.61  Aligned_cols=69  Identities=7%  Similarity=-0.048  Sum_probs=44.2

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCee--eEEee-cCCCeeeeeecC-CCCceeeeCCcceEeeeeccccceeeec
Q 033675           29 SGDLALVATLNGTVHLVDTKRGES--RWSFS-MGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKMKDIM   97 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~--~WSFS-tGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~kl~~   97 (114)
                      .+.+..+|+.||+|.+++..+++.  .-.+. -.++|.+-.=.| +...++-|+.|=.+.+-+..-+..+...
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  203 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA  203 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence            445677899999999998776653  33332 345676542222 3456888999977766666555444433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=87.46  E-value=5.6  Score=27.65  Aligned_cols=66  Identities=11%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .....+.|+.||+|.++|..+++..-.+..- .++.+.--.|+...++-+++|=.+.+-+..-|+..
T Consensus       197 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             TCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            3456788999999999999999999888643 45554332334456888999988888787777763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=86.45  E-value=6.7  Score=27.54  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeec
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRK   88 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~   88 (114)
                      +.....+.|+.||+|.++|..+++..-.|.. .+++.+---.++...++-++.|=.+.+-+.
T Consensus        75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            4556778899999999999999999888863 345655422334466788888865555554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=86.04  E-value=7.1  Score=30.65  Aligned_cols=62  Identities=23%  Similarity=0.235  Sum_probs=46.7

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKG   89 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~   89 (114)
                      +.....+.++.||+|.++|..+++..-.|.. ..+|.+---.++...++-|+.|=.+.+.+..
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            3556778899999999999999999888853 4566655333466778899999777766643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=85.59  E-value=8.1  Score=27.72  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=47.2

Q ss_pred             CCCceEEEee--CCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCc----------ceEeeeecccccee
Q 033675           29 SGDLALVATL--NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED----------WKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatl--DGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdD----------W~LY~h~~~~GK~k   94 (114)
                      ..+..+|+..  +++|+.+|..++++.+.+..|.-...-...++...|+-|..+          =.+|.-+..-|+..
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence            5667788874  899999999999999999887643333333344456666544          47888888777763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=85.45  E-value=1.5  Score=35.61  Aligned_cols=64  Identities=5%  Similarity=0.021  Sum_probs=46.4

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEE----eec-CCCeeeeeecCC---CCceeeeCCcceEeeeeccccc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWS----FSM-GKPIYSSFTRND---PDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WS----FSt-GsPIYSSYqA~~---~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      .+...++++.||+|+++|..+++..|.    +.. .++|.+---.|+   ...++-++.|-.+++-+...|+
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence            467889999999999999888754443    332 556665533334   4678889999998888877764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=85.29  E-value=4  Score=33.15  Aligned_cols=65  Identities=9%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             CCCCceEEEeeCCeEEEEeCC--CCeeeEEeec-CCCeeeeeecCC--CCceeeeCCcceEeeeeccccc
Q 033675           28 ESGDLALVATLNGTVHLVDTK--RGESRWSFSM-GKPIYSSFTRND--PDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~--s~r~~WSFSt-GsPIYSSYqA~~--~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      +.....++|+.||+|.+++..  +++....+.. ..+|++---.++  ...++-++.|-.+++-+..-|+
T Consensus        19 ~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            345677888899999999876  6677878763 467776533344  5678899999999998888776

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=85.19  E-value=5.9  Score=28.56  Aligned_cols=61  Identities=20%  Similarity=0.052  Sum_probs=42.4

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEee-----cCCCeeeeeecCCCCceeeeCCcceEeeee
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFS-----MGKPIYSSFTRNDPDFYVDVGEDWKLYFHR   87 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFS-----tGsPIYSSYqA~~~~~fidcgdDW~LY~h~   87 (114)
                      ++.....+.++-||+|+++|..+++....+.     -..+|.+---.|+...++-++.|=.+.+-+
T Consensus       307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            3466777888899999999999999988873     234555442333556778888885555444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=83.89  E-value=10  Score=27.35  Aligned_cols=67  Identities=15%  Similarity=0.129  Sum_probs=45.6

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC-------eeeeeecCCC-CceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKP-------IYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP-------IYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +.....+.|+.||+|.++|..+++..-.+.....       .-.+...+++ ..++-.++|=.+++-+...|+..
T Consensus       259 p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             TTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             cCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            3556677889999999999999999877764321       2233344444 45556667777777777666653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=83.54  E-value=6.8  Score=25.17  Aligned_cols=62  Identities=8%  Similarity=-0.067  Sum_probs=35.3

Q ss_pred             EEEeeCCeEEEEeCCC-CeeeEEeecC--CCeeeeeecCCC-CceeeeC----CcceEeeeeccccceeee
Q 033675           34 LVATLNGTVHLVDTKR-GESRWSFSMG--KPIYSSFTRNDP-DFYVDVG----EDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        34 LVatlDGTiYLVd~~s-~r~~WSFStG--sPIYSSYqA~~~-~~fidcg----dDW~LY~h~~~~GK~kl~   96 (114)
                      |+.+-||+|++++..+ +++.-.+...  ..+. +.+.+++ ..++=+.    ...++|..+..-|+.+..
T Consensus        56 l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  125 (297)
T 2ojh_A           56 LLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM  125 (297)
T ss_dssp             EEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred             EEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe
Confidence            4445599999999988 7766444322  2222 2344433 3333333    257888887766665443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=82.98  E-value=8.8  Score=26.04  Aligned_cols=63  Identities=10%  Similarity=-0.010  Sum_probs=44.5

Q ss_pred             CCceEE-EeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCC-CC-ceeeeCCcceEeeeeccccce
Q 033675           30 GDLALV-ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND-PD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLV-atlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~-~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .+.++| +.-||+|+++|..+++....+..+..-- ....++ .. .|+-+.+|-+++.-+..-|+.
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence            444444 4568999999999999998887653222 334443 33 577777777999999888884

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=82.72  E-value=8  Score=28.37  Aligned_cols=61  Identities=8%  Similarity=-0.111  Sum_probs=40.4

Q ss_pred             eEEEeeCCeEEEEeCC--CCeeeEEee---cCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           33 ALVATLNGTVHLVDTK--RGESRWSFS---MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        33 aLVatlDGTiYLVd~~--s~r~~WSFS---tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +++++.||+|.+++..  +++..-.+.   .+.++.+---.|+...++-++.|-.++.-+..-|+.
T Consensus       118 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~  183 (450)
T 2vdu_B          118 IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE  183 (450)
T ss_dssp             EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred             EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence            4567789999999988  888887774   345555432223445566666777777766555543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=82.32  E-value=8.3  Score=30.04  Aligned_cols=66  Identities=15%  Similarity=0.124  Sum_probs=48.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEee--------cCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFS--------MGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFS--------tGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.......|+.||+|.+++..+++..-.|.        -..++++---.|+...++-++.|=.+.+-+..-|+.
T Consensus       200 pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            345566778999999999999999888873        335666543334556788899997777777776665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=82.30  E-value=8.4  Score=27.19  Aligned_cols=67  Identities=12%  Similarity=0.082  Sum_probs=42.8

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCe-----------eeEEeecC-------------CCeeeeeecCCC--CceeeeCCc
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGE-----------SRWSFSMG-------------KPIYSSFTRNDP--DFYVDVGED   80 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r-----------~~WSFStG-------------sPIYSSYqA~~~--~~fidcgdD   80 (114)
                      ++.....++|+.||+|.+++..+++           +.-.|..-             ++|.+---.|+.  ..++-++.|
T Consensus        37 s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d  116 (447)
T 3dw8_B           37 NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND  116 (447)
T ss_dssp             CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECS
T ss_pred             CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCC
Confidence            3456677788999999999988887           35555433             445544333333  468888888


Q ss_pred             ceEeeeeccccce
Q 033675           81 WKLYFHRKGIGKM   93 (114)
Q Consensus        81 W~LY~h~~~~GK~   93 (114)
                      =.+.+-+..-++.
T Consensus       117 ~~i~iw~~~~~~~  129 (447)
T 3dw8_B          117 KTIKLWKISERDK  129 (447)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CeEEEEecccccC
Confidence            7777666655443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=82.18  E-value=12  Score=29.61  Aligned_cols=60  Identities=12%  Similarity=0.049  Sum_probs=39.8

Q ss_pred             ceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCc-eeeeCCcceEeeeec--cccce
Q 033675           32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDF-YVDVGEDWKLYFHRK--GIGKM   93 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~-fidcgdDW~LY~h~~--~~GK~   93 (114)
                      +...+..||+|.++|..++++...+..|...++. ..+ +..+ |+-..| =.+++-+.  .-|+.
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v-~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHIS-RMSASGRYLLVIGRD-ARIDMIDLWAKEPTK  214 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEE-EECTTSCEEEEEETT-SEEEEEETTSSSCEE
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcccceE-EECCCCCEEEEECCC-CeEEEEECcCCCCcE
Confidence            3344556899999999999999999998886644 333 3333 444444 45666665  44554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=81.87  E-value=9.6  Score=29.05  Aligned_cols=63  Identities=5%  Similarity=-0.107  Sum_probs=42.5

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +...+.++.||+|.++|..+++....... +.++.+--=-|+...++-++.|=.++.-+.+ |+.
T Consensus       162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~  225 (434)
T 2oit_A          162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE  225 (434)
T ss_dssp             TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred             CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence            45666789999999999999877665543 4556554222344556666677677777776 554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=81.72  E-value=9.9  Score=32.22  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=49.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +...+..+|+.||+|++++..+++..-.+....+|.+-- ..++...+-+++|=.+.+-+..-|+.
T Consensus        27 pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~-fspg~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           27 FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMR-FVKGIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEE-EETTTEEEEEETTCEEEEEETTTCSE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEE-EcCCCEEEEEECcCeEEEEECCCCcE
Confidence            355677888999999999999999888777777887653 22344678888887777777766664

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=81.12  E-value=12  Score=27.46  Aligned_cols=64  Identities=8%  Similarity=-0.040  Sum_probs=45.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCC---eeeEEee-cCCCeeeeeecCCCC-ceeeeCCcceEeeeeccccc
Q 033675           29 SGDLALVATLNGTVHLVDTKRG---ESRWSFS-MGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~---r~~WSFS-tGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~GK   92 (114)
                      .....++++-||+|+++|..++   ++.+.+. .++++.+---.|+.. .++-+++|-.+.+.+.+.++
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~  311 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK  311 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC
Confidence            3455567778999999999887   6888884 445665442223333 47788899888888877644

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=81.01  E-value=13  Score=26.64  Aligned_cols=72  Identities=11%  Similarity=0.088  Sum_probs=45.5

Q ss_pred             CceEEEe-eCCeEEEEeCCCCeeeEEeecCC-------CeeeeeecCCCCceeee-CCcceEeeeeccccce-eeecccC
Q 033675           31 DLALVAT-LNGTVHLVDTKRGESRWSFSMGK-------PIYSSFTRNDPDFYVDV-GEDWKLYFHRKGIGKM-KDIMKST  100 (114)
Q Consensus        31 ~taLVat-lDGTiYLVd~~s~r~~WSFStGs-------PIYSSYqA~~~~~fidc-gdDW~LY~h~~~~GK~-kl~~~s~  100 (114)
                      +.++|+. .+|+|+.+|..++++.+.+..|.       |..-.+  .+...|+-. |.+=+++.-+..-|+. +.+....
T Consensus        95 g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~  172 (328)
T 3dsm_A           95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI  172 (328)
T ss_dssp             TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS
T ss_pred             CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC
Confidence            4667777 79999999999999999999876       322121  233345543 2234677777777765 3333333


Q ss_pred             CCce
Q 033675          101 TPNC  104 (114)
Q Consensus       101 ~~~~  104 (114)
                      .|++
T Consensus       173 ~p~~  176 (328)
T 3dsm_A          173 QPTS  176 (328)
T ss_dssp             CBCC
T ss_pred             Cccc
Confidence            4544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.07
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.93
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.83
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.74
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.7
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.54
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.49
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.24
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.04
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.01
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	95.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.81
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.72
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.47
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.45
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.41
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.58
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	94.54
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.9
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.39
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	93.35
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.02
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	92.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	92.59
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	92.25
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.09
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.53
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	91.46
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	91.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	90.16
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	89.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	89.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.84
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	89.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	87.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	87.51
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	87.33
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	84.12

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.07  E-value=0.00023  Score=56.10  Aligned_cols=36  Identities=33%  Similarity=0.560  Sum_probs=34.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS   64 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS   64 (114)
                      ..+++++++.||.+|.+|..+||++|+|.++.++++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a  509 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee
Confidence            678999999999999999999999999999999885

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.98  E-value=0.00033  Score=54.85  Aligned_cols=41  Identities=27%  Similarity=0.566  Sum_probs=35.6

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee---eeecC
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS---SFTRN   69 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS---SYqA~   69 (114)
                      ..+++|+++.||++|.+|..+||++|+|.++.++.+   +|.+.
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~d  511 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA  511 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence            678899999999999999999999999999988874   45443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.93  E-value=0.00038  Score=54.53  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=33.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS   64 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS   64 (114)
                      ..+++|++++||++|.+|..+||++|+|.++.++.+
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~  531 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS  531 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccc
Confidence            567899999999999999999999999999988763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.86  E-value=0.00046  Score=54.95  Aligned_cols=40  Identities=28%  Similarity=0.596  Sum_probs=35.1

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee---eeec
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS---SFTR   68 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS---SYqA   68 (114)
                      ..+++|+++.||.++.+|..+||++|+|.++.++.+   +|.+
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~  525 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH  525 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEE
Confidence            567889999999999999999999999999998873   4554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0017  Score=40.63  Aligned_cols=54  Identities=9%  Similarity=0.038  Sum_probs=41.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCee-eeeecCCCCceeeeCCcc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDW   81 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY-SSYqA~~~~~fidcgdDW   81 (114)
                      +...+.+.|+-||+|+++|..+++.+.+|..+.+.. -++..+++-..+-++|||
T Consensus       261 p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred             CCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCc
Confidence            456677788999999999999999999998766554 333434445567788986

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.74  E-value=0.00067  Score=53.04  Aligned_cols=41  Identities=17%  Similarity=0.448  Sum_probs=35.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeee---eeecC
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS---SFTRN   69 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYS---SYqA~   69 (114)
                      ..+++|+++.||.++.+|..+||++|+|.++.++.+   +|++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~  530 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD  530 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence            567888899999999999999999999999988775   45543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.015  Score=36.62  Aligned_cols=65  Identities=8%  Similarity=0.051  Sum_probs=52.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .++..+.|+.||+|.++|..+++.+.+|.. .++|++- +.++.+.++-++.|-.+.+.+...++..
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l-~~s~~~~l~s~s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE-EEETTTEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEE-EEcCCCEEEEEecccccccccccccccc
Confidence            456777889999999999999999999974 5678765 3345567889999999988887777653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.019  Score=35.16  Aligned_cols=66  Identities=11%  Similarity=0.109  Sum_probs=51.0

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      .+...+.|+-||+|.++|..++++...|.. ..+|.+- + +++..++-++.|-.+...+...|.....
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v-~-~~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-Q-YDERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE-E-CCSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeee-e-cccceeeccccccccccccccccccccc
Confidence            455667789999999999999999999963 4566542 3 3556788899999998888887776433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.024  Score=34.92  Aligned_cols=67  Identities=7%  Similarity=0.012  Sum_probs=46.4

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      +..++.+.|+.||+|.++|..+++...+|.. .+++.+-.-.++...+.-++.+-.....+...++..
T Consensus        27 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (317)
T d1vyhc1          27 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI   94 (317)
T ss_dssp             SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccc
Confidence            4566777889999999999999999999974 456665433334455556666656666655555553

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.24  E-value=0.024  Score=35.91  Aligned_cols=66  Identities=9%  Similarity=0.041  Sum_probs=48.7

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccc
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      ++.....+.|+.||+|.++|..+++...++.. .++|.+---.|+...++-++.|-.+...+.....
T Consensus        64 s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~  130 (340)
T d1tbga_          64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred             CCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc
Confidence            34566777889999999999999999999974 5677765334455667778888877766654443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.052  Score=33.87  Aligned_cols=67  Identities=13%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      .+...+.++.||+|++++..++++...+......-.+...++ +.++-++.|=.+++.+...++....
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~  252 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQT  252 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-CEEEEEcCCCEEEEEeccccccccc
Confidence            456678889999999999999999999988777666655544 4778888898899888887776433

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.018  Score=38.62  Aligned_cols=52  Identities=13%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC-CceeeeCCc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGED   80 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~~fidcgdD   80 (114)
                      +.....+.++.||+|+++|..++++..++...++|.+- +.+++ ..++-+++|
T Consensus       275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC-DISVDDKYIVTGSGD  327 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE-EECTTSCEEEEEETT
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEE-EEeCCCCEEEEEeCC
Confidence            34456677889999999999999999999988999864 44444 456666777

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.95  E-value=0.052  Score=34.39  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             CceEEEeeCCeEEEEeCCCCeeeEEeecC----CCeeeeeecCCCCc-eeeeCCcceEeeeeccccceeeecccC
Q 033675           31 DLALVATLNGTVHLVDTKRGESRWSFSMG----KPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIGKMKDIMKST  100 (114)
Q Consensus        31 ~taLVatlDGTiYLVd~~s~r~~WSFStG----sPIYSSYqA~~~~~-fidcgdDW~LY~h~~~~GK~kl~~~s~  100 (114)
                      ++.++++.||+|+++|..+++++.++.-+    .|. +..-.||... |+-...|=.+++.+..-||........
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            46788999999999999999999999642    232 2222244443 565555556999999889885554433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=95.89  E-value=0.091  Score=32.91  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             CCCceEEEe-eCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC-CceeeeCCcceEeeeeccccce-eeecccCCCcee
Q 033675           29 SGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGEDWKLYFHRKGIGKM-KDIMKSTTPNCY  105 (114)
Q Consensus        29 ~~~taLVat-lDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~~fidcgdDW~LY~h~~~~GK~-kl~~~s~~~~~~  105 (114)
                      .....+|+. -||+|.++|..+++....+..+.-..+-.-.++. ..++.+.+|..++..+..-|+. +.......|+|.
T Consensus        42 dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (301)
T d1l0qa2          42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL  121 (301)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeeccccccceEE
Confidence            334455554 6899999999999999999887765543333333 4678889999999998888876 333444444443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.072  Score=35.52  Aligned_cols=66  Identities=14%  Similarity=0.049  Sum_probs=52.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++++.||+|.+++..+++.+..+...++|.+---.+....++-+++|-.++..+...++.
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             ccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccc
Confidence            355678889999999999999999999999999998753233445566677888888888777765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.076  Score=33.08  Aligned_cols=68  Identities=13%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccceeeecc
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMK   98 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~~   98 (114)
                      .+++.+.|+.||+|.++|..++++.-+|.. ..+|++. ..++ +.++-++.|-.+...+....+......
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v-~~~~-~~l~s~s~D~~~~~~~~~~~~~~~~~~   94 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS-QMRD-NIIISGSTDRTLKVWNAETGECIHTLY   94 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEE-EEET-TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEE-EeCC-Cccccceecccccccccccccceeccc
Confidence            345667789999999999999999988863 2356543 3333 467777888777777766665543333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.47  E-value=0.14  Score=32.18  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+.++.||+|.++|..++++..+|.. .++|.+-.-.|+...++-++.|-.+++.+...++.
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            3566778889999999999999999999985 45666543233445677888898888888777665

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.13  Score=31.48  Aligned_cols=65  Identities=12%  Similarity=0.148  Sum_probs=51.7

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ......+++.||+|++++..++++..+|.. ..+|.+-.-.|+...++-+++|=.+++-+..-|+.
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  281 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC  281 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred             CCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE
Confidence            445677889999999999999999999874 45666655555667788888999999988888876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.094  Score=34.42  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....++|+.||+|.+++...++....+.. ..++.+....++...++.+++|-.+.+.+..-++.
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  197 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  197 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc
Confidence            456677899999999999999999988874 45666554445556677788888777777665554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.13  E-value=0.038  Score=42.82  Aligned_cols=65  Identities=22%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-----------CCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-----------DPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-----------~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      ..++.+|++.+|.||.+|..+|+.+|+|....+.-......           +...|+-.. |=+||.-+..-||..
T Consensus        76 ~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-~g~l~alda~tG~~~  151 (573)
T d1kb0a2          76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DGRLIALDAATGKEV  151 (573)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             ECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-ccceeeeccccccce
Confidence            77889999999999999999999999998665544332211           112233333 337888888888773

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.97  E-value=0.054  Score=41.98  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=45.8

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeee--e-c------CCCCceeeeCCcceEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSF--T-R------NDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSY--q-A------~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      -.++.+|++.+|.||.+|..+|+.+|+|....|.-..-  . +      .+...|+-.. |-.||.=+..-||..
T Consensus        67 ~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-~~~l~alda~tG~~~  140 (582)
T d1flga_          67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVVALNKNTGKVV  140 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEEEEESSSCCEE
T ss_pred             ECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC-CCeEEEeccccccee
Confidence            67889999999999999999999999997665432110  0 0      0223455433 457888888888764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.58  E-value=0.21  Score=31.15  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=44.6

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~   96 (114)
                      +......+++.||+|++++..+++..+.+......-.+.+. ++..++-++.|-.+++.+..-++.+..
T Consensus       211 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         211 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL-SDKFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             TTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE-CSSEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccceeeecccccceEEeeecccccccccccccccccccccc-ccceeeeeecccccccccccccceecc
Confidence            35566778888888888888888888887653322223333 335666677777777777766665443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.24  Score=29.96  Aligned_cols=68  Identities=12%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceeeec
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIM   97 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~   97 (114)
                      .....+.++.||+|.+++..++++..++......-.... +....++-++.|-.+.+.+...++.....
T Consensus       147 ~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ-YRDRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccccccccCCCceeeecCCCCcEEEEEccccccccccc-CCCCeEEEecCCCEEEEEecccceeeeee
Confidence            556678889999999999999999999875544333322 23456777888888888877777664433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.22  Score=33.32  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecC-CCeeee-ee--cCCCCceeeeCCcceEeeeeccccce
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMG-KPIYSS-FT--RNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStG-sPIYSS-Yq--A~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      ....+.++.||+|.++|..+++..-+|... .|+++. |.  -+|...++-++.|-.+.+-+..-|+.
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence            455566889999999999999999888642 234322 22  24556789999999999999888886

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.90  E-value=0.16  Score=39.16  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             cCCCCCC-CCCCC-CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCee---ee-eecCCC------C-ceeeeCCcceE
Q 033675           17 SLPPTSP-RASPE-SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY---SS-FTRNDP------D-FYVDVGEDWKL   83 (114)
Q Consensus        17 s~p~~s~-~~~~~-~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY---SS-YqA~~~------~-~fidcgdDW~L   83 (114)
                      ++|..+. |.++. -.++.+|++-+|.||.+|..+|+.+|+|....+..   ++ +.+..+      + .|+-. .|=.|
T Consensus        51 ~~~~~~~~~stPiv~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~l  129 (560)
T d1kv9a2          51 DLDNTRGLEATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-LDGRL  129 (560)
T ss_dssp             ECSCCSCCCCCCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-TTSEE
T ss_pred             ECCCCCCcEeCCEEECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe-CCCEE
Confidence            4555543 33333 77889999999999999999999999997554322   11 111111      1 23322 23468


Q ss_pred             eeeecccccee
Q 033675           84 YFHRKGIGKMK   94 (114)
Q Consensus        84 Y~h~~~~GK~k   94 (114)
                      |.=+..-||..
T Consensus       130 ~Alda~tG~~~  140 (560)
T d1kv9a2         130 IALDAKTGKAI  140 (560)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCcEE
Confidence            88888888874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.39  E-value=0.11  Score=40.89  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             CCceEEEeeCCeEEEEeCCCCeeeEEeecCCC--eeeeeecC---CCCcee-----eeCCcceEeeeeccccceeee
Q 033675           30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYSSFTRN---DPDFYV-----DVGEDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsP--IYSSYqA~---~~~~fi-----dcgdDW~LY~h~~~~GK~kl~   96 (114)
                      +...++++.||.||.+|..+|++.|+|..+.+  .+..-.+|   ++..|+     ||+-.=.++.+|..-||..=.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence            44689999999999999999999999987643  22222233   332222     333334588888888888544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=93.35  E-value=0.42  Score=30.09  Aligned_cols=66  Identities=18%  Similarity=0.076  Sum_probs=45.8

Q ss_pred             CCCCCCceEEEeeCCeEEEEeCCCCeeeEEeec---CCCeeeeeecC-CCC-ceeeeCCcceEeeeeccccce
Q 033675           26 SPESGDLALVATLNGTVHLVDTKRGESRWSFSM---GKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        26 ~~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt---GsPIYSSYqA~-~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      -++..++.++++.|++|+++|..++++..++.-   ++|-  +-..+ |.. .|+-+.+|=+++.=+..-||.
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~--~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG--TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC--EEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc--eEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            356677889999999999999999999998763   3442  22333 333 366665555666666666665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=0.3  Score=29.98  Aligned_cols=68  Identities=10%  Similarity=-0.039  Sum_probs=45.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCC----eeeEEeecCCCeeeee-ecCCCCceeeeCCcceEeeeeccccceee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRG----ESRWSFSMGKPIYSSF-TRNDPDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~----r~~WSFStGsPIYSSY-qA~~~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      +..+.-++|+.||||.++|..++    +..-.+.-..|+.+-- ..++...++-++.|=.+...+...++...
T Consensus        21 p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~   93 (342)
T d1yfqa_          21 PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             CCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc
Confidence            45667788899999999986543    3344455677887642 22334467778888777777766665533

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.91  E-value=0.81  Score=30.68  Aligned_cols=65  Identities=17%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecC--------CCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG--------KPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStG--------sPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....++++-||+|.+++..+++..+.|...        .+|++- +.+ +...++-++.|=.+++-+..-||.
T Consensus       199 p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~-~~s~~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL-TWSPDGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE-EECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            35667778889999999999999999998653        356542 333 446677888898888888888887

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.59  E-value=0.64  Score=31.23  Aligned_cols=65  Identities=15%  Similarity=0.143  Sum_probs=47.7

Q ss_pred             CCCceEE-EeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           29 SGDLALV-ATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        29 ~~~taLV-atlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      .....|+ ++.||+|.++|..+++....+.. ..||.+-.--|+...++-++.|=.+..-+..-|+.
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccc
Confidence            3444444 67899999999999999999876 56777765445556677788887777777666554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.25  E-value=0.29  Score=33.42  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=40.6

Q ss_pred             ceEEEeeCCeEEEEeCCCCeeeEEeecC-------CCeeeeeecCCCCceeeeCCc-----ceEeeeeccccce
Q 033675           32 LALVATLNGTVHLVDTKRGESRWSFSMG-------KPIYSSFTRNDPDFYVDVGED-----WKLYFHRKGIGKM   93 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s~r~~WSFStG-------sPIYSSYqA~~~~~fidcgdD-----W~LY~h~~~~GK~   93 (114)
                      +..+|+-||+|.++|..++++...+...       .||.+--=.|+...++-+++|     |++|  +...|+.
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lw--d~~~g~~  268 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY--ETEFGER  268 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE--ETTTCCE
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeec--cccccee
Confidence            5557889999999999999999988754       355543222344566777776     5554  4444543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.09  E-value=0.77  Score=28.44  Aligned_cols=65  Identities=17%  Similarity=0.190  Sum_probs=49.6

Q ss_pred             CCCCceEEEeeC---CeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCC-ceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLN---GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD-FYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlD---GTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~-~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.....+|+..|   ++|+++|..+++...++..|+..++- ..+ |.. -|+-+++|=++.+-|..-||.
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~v-a~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI-AVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE-EECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEE-EEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            345556677655   68999999999999999998776543 343 333 378999998999988888876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.53  E-value=0.61  Score=29.51  Aligned_cols=59  Identities=19%  Similarity=0.109  Sum_probs=40.9

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeeeEEeecC--CCeeeeeecCCCCceeeeCCcceEeeee
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMG--KPIYSSFTRNDPDFYVDVGEDWKLYFHR   87 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStG--sPIYSSYqA~~~~~fidcgdDW~LY~h~   87 (114)
                      +...+.+.|+.||+|.++|..+++..-.+..+  .+|.+ .+.++++-++-++.|-.+..-+
T Consensus        22 ~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~-v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2          22 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG-IKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE-EEECTTSCEEEEETTTEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEE-EEeeccceeecccceeeEEEec
Confidence            34556677899999999999999988887654  45554 3444554566677776665544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.46  E-value=0.84  Score=30.75  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcc--eEeeeecccccee
Q 033675           29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDW--KLYFHRKGIGKMK   94 (114)
Q Consensus        29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW--~LY~h~~~~GK~k   94 (114)
                      .....++++-||+|.++|..+++..-++.. +.|+.+- ...+++-++-+|.|=  .++..+...++..
T Consensus       212 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~-~fs~d~~~la~g~d~~~~~~~~~~~~~~~~  279 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV-TFITESSLVAAGHDCFPVLFTYDSAAGKLS  279 (371)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE-EEEETTEEEEEETTSSCEEEEEETTTTEEE
T ss_pred             ccccccccccCCcceEEeeecccceeeeecccccceee-eecCCCCEEEEEcCCceEEEEeeCCCceEE
Confidence            455666788899999999999999988876 5577764 333333455566443  4566666666653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=91.36  E-value=1.2  Score=29.10  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=52.5

Q ss_pred             EEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCC--ceeeeCCcceEeeeeccccceeeec--ccCCCce
Q 033675           34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD--FYVDVGEDWKLYFHRKGIGKMKDIM--KSTTPNC  104 (114)
Q Consensus        34 LVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~--~fidcgdDW~LY~h~~~~GK~kl~~--~s~~~~~  104 (114)
                      +....+++|.++|..+++..+++..|.++++- +.+ |..  .|+-.+.|=.++..|..-||+.-..  -..+|++
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~-a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~  366 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQISLGHDVDAI-SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEecCCCCeeEE-EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcE
Confidence            44566788999999999999999999998865 444 333  4666677778999999999993333  3456654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.16  E-value=1.5  Score=28.17  Aligned_cols=68  Identities=28%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             CeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCC--ceeeeCCcceEeeeeccccce-eee-cccCCCceeeee
Q 033675           40 GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPD--FYVDVGEDWKLYFHRKGIGKM-KDI-MKSTTPNCYFTN  108 (114)
Q Consensus        40 GTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~--~fidcgdDW~LY~h~~~~GK~-kl~-~~s~~~~~~~~~  108 (114)
                      .+|+++|..+++...++..|..+++- +.+ |..  .|+-.+.|=+++..|..-||. +.+ ..-..|.|-+++
T Consensus       280 ~~v~v~d~~t~~~~~~~~~~~~~~~~-a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEMGHEIDSI-NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECEE-EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred             CeEEEEeCCCCcEEEEecCCCCEEEE-EEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence            37899999999999999988877654 444 333  467777788999999999997 333 346778887765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.94  E-value=0.71  Score=29.72  Aligned_cols=38  Identities=13%  Similarity=0.019  Sum_probs=29.8

Q ss_pred             CCCCCCCceEEEe-----eCCeEEEEeCCCCeeeEEeecCCCe
Q 033675           25 ASPESGDLALVAT-----LNGTVHLVDTKRGESRWSFSMGKPI   62 (114)
Q Consensus        25 ~~~~~~~taLVat-----lDGTiYLVd~~s~r~~WSFStGsPI   62 (114)
                      +.++....++|+.     .+++||++|..+|++++++..|..-
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~   50 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP   50 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC
Confidence            3355666667764     5778999999999999999988765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.86  E-value=1.6  Score=28.23  Aligned_cols=64  Identities=20%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             EEEeeCCeEEEEeCCCCeeeEEeecCCC-------------------eeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675           34 LVATLNGTVHLVDTKRGESRWSFSMGKP-------------------IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        34 LVatlDGTiYLVd~~s~r~~WSFStGsP-------------------IYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      |+++-||+|.+++..+++..-.+.....                   |++-.--|+...++-|+.|-.+.+.+...|+..
T Consensus        77 lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~  156 (388)
T d1erja_          77 LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV  156 (388)
T ss_dssp             EEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccc
Confidence            3444599999999999998887754332                   333211123356778889999999888888774


Q ss_pred             eec
Q 033675           95 DIM   97 (114)
Q Consensus        95 l~~   97 (114)
                      ...
T Consensus       157 ~~~  159 (388)
T d1erja_         157 MIL  159 (388)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            433

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.84  E-value=0.84  Score=28.76  Aligned_cols=64  Identities=19%  Similarity=0.275  Sum_probs=44.0

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeee---EEeecCCCeee-eeec---------CCCCceeeeCCcceEeeeeccccc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESR---WSFSMGKPIYS-SFTR---------NDPDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~---WSFStGsPIYS-SYqA---------~~~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      +.....++++-||+|+++|..+++..   |.++++. +.+ +++.         .+..+++-.+.|=.+++.+...++
T Consensus       172 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             cCccccccccccccccceeecccccccccccccccc-cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            35567778899999999999988764   6666543 433 2221         234567788889888888865543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.76  E-value=1.6  Score=29.26  Aligned_cols=64  Identities=13%  Similarity=0.130  Sum_probs=44.4

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCe--eeEEeec-CCCeeeeeecC-CCCceeeeCCcceEeeeeccccc
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGE--SRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGK   92 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r--~~WSFSt-GsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK   92 (114)
                      +.....++|+-||+|.+++..+++  ....|.- .+||.+- +.+ +...++-|+.|-.+++-+..-+.
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l-~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV-DWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEE-EEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEE-EECCCCCEEEEEECCCeEEEEeecccc
Confidence            445566678899999999987775  5566643 3678655 443 44667889999877776655444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.72  E-value=0.89  Score=35.09  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             CCCceEEEee-CCeEEEEeC-CCCeeeEEeecCCCeeeeeec----CC-------CCceeeeCCcceEeeeeccccceee
Q 033675           29 SGDLALVATL-NGTVHLVDT-KRGESRWSFSMGKPIYSSFTR----ND-------PDFYVDVGEDWKLYFHRKGIGKMKD   95 (114)
Q Consensus        29 ~~~taLVatl-DGTiYLVd~-~s~r~~WSFStGsPIYSSYqA----~~-------~~~fidcgdDW~LY~h~~~~GK~kl   95 (114)
                      ..++.+|++- +|+||.+|. ++|+.+|+|....+.-+.-..    ..       ...|+-+ .|-+||.=|..-||...
T Consensus        61 ~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-ANGHLLALDAKTGKINW  139 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-CCCcEEeeehhhhhhhc
Confidence            6677788774 799999997 689999999877665432211    11       1224433 45789999999998843

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.90  E-value=1.7  Score=27.33  Aligned_cols=66  Identities=14%  Similarity=0.057  Sum_probs=46.3

Q ss_pred             CCCCceEEEeeCCeEEEEeCCCCeee--EEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675           28 ESGDLALVATLNGTVHLVDTKRGESR--WSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        28 ~~~~taLVatlDGTiYLVd~~s~r~~--WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~   93 (114)
                      +.+....+++.||+|++++..+++..  ....-..+|.+---.++..+++-++.|-.++..+..-++.
T Consensus       146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  213 (299)
T d1nr0a2         146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE  213 (299)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566778899999999998777654  3344456676543334556677788888888888766654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.59  E-value=2.6  Score=27.81  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=47.7

Q ss_pred             ceEEEeeCCeEEEEeCCCCeeeEEeecC----CCeeeeeecCC--CCceeeeCCcceEeeeecccccee
Q 033675           32 LALVATLNGTVHLVDTKRGESRWSFSMG----KPIYSSFTRND--PDFYVDVGEDWKLYFHRKGIGKMK   94 (114)
Q Consensus        32 taLVatlDGTiYLVd~~s~r~~WSFStG----sPIYSSYqA~~--~~~fidcgdDW~LY~h~~~~GK~k   94 (114)
                      .++.++.||+|.++|..+++..-++...    .+|++- +.+|  ..+++-|+.|..+++.+..-|+..
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v-~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV-EFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE-EECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEe-eeccccceeccccccccceeeeeecccccc
Confidence            4667889999999999999988777653    446543 3343  356788999999999998888863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=87.51  E-value=2.1  Score=26.68  Aligned_cols=59  Identities=12%  Similarity=0.037  Sum_probs=43.8

Q ss_pred             EEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCc-eeeeCCcceEeeeeccccce
Q 033675           34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF-YVDVGEDWKLYFHRKGIGKM   93 (114)
Q Consensus        34 LVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~-fidcgdDW~LY~h~~~~GK~   93 (114)
                      ++...+++|+++|..+++..+.+..|.++++--=.+|... |+- +.|=.+.+.|..-+|.
T Consensus       266 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~-~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         266 QIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             EEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTTEE
T ss_pred             EEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECccCCE
Confidence            3445568999999999999999999988775422334433 554 4455899999998887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.33  E-value=0.45  Score=30.27  Aligned_cols=68  Identities=13%  Similarity=-0.052  Sum_probs=43.1

Q ss_pred             CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCC-ceeeeC--CcceEeeeeccccceeee
Q 033675           27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVG--EDWKLYFHRKGIGKMKDI   96 (114)
Q Consensus        27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~-~fidcg--dDW~LY~h~~~~GK~kl~   96 (114)
                      ||+....+..+-+|.||+++...+++.--.+ +..|.+ .+-+|++ ..+=++  ++-.++.-+..-|+.+..
T Consensus        11 SP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~-~~~v~~-~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3          11 SPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE-PLRIRY-VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             EECGGGCEEEEETTEEEEECTTSSBEEECSC-CSCEEE-EEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             cCCCCCEEEEEECCeEEEEECCCCcEEEccC-CCCEEE-EEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            4433444455668999999999999986544 455654 3445443 333333  334688888888887544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.12  E-value=3.9  Score=28.15  Aligned_cols=41  Identities=20%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             CCceEE-EeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC
Q 033675           30 GDLALV-ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP   71 (114)
Q Consensus        30 ~~taLV-atlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~   71 (114)
                      .++.+| ++-||+|.++|..+++++..|..|.-.++- ..+|.
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~v-afSPD   72 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHIS-RMSAS   72 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEE-EECTT
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEE-EECCC
Confidence            445555 556899999999999999999998766643 44433