Citrus Sinensis ID: 033676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSVSA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvttfgmseigpwslvdgsqsGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFveipsenrvapavpaplsvsa
Flexible Loop (DISEMBL)
mvttfgmseigpwslvdgsqSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIAlsqirnnreaIDKIVEVLLEKETMSGDEFRAILSEfveipsenrvapavpaplsvsa
Low Complexity Region (SEG)
MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRvapavpaplsvsa
Disordered region (IsUnstruct)
************W*L************************ADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEI******************
Disordered Region (DISOPRED)
MVTTFGMSEIGPWSLVDGSQSGDVIMRMM****MSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL************************
Disordered Region (DISEMBL)
MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSVSA
Disordered Region (DISPRO)
****F*MSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEI******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSVSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q8W585	685	ATP-dependent zinc metall	yes	no	0.894	0.148	0.872	2e-46
Q655S1	676	ATP-dependent zinc metall	yes	no	0.894	0.150	0.873	2e-45
O80860	695	ATP-dependent zinc metall	no	no	0.894	0.146	0.823	1e-43
Q67WJ2	686	ATP-dependent zinc metall	no	no	0.885	0.147	0.647	2e-33
Q1PDW5	688	ATP-dependent zinc metall	no	no	0.850	0.140	0.663	4e-33
Q55700	627	ATP-dependent zinc metall	N/A	no	0.912	0.165	0.398	9e-18
P49825	644	ATP-dependent zinc metall	N/A	no	0.868	0.153	0.450	2e-15
Q1XDF9	628	ATP-dependent zinc metall	N/A	no	0.859	0.156	0.450	5e-15
P51327	628	ATP-dependent zinc metall	N/A	no	0.859	0.156	0.421	2e-14
O78516	631	ATP-dependent zinc metall	yes	no	0.850	0.153	0.435	3e-14

>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 94/102 (92%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
           MVTTFGMSEIGPWSL+D S+  DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQ
Sbjct: 570 MVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQ 629

Query: 61  IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
           IRNNREA+DKIVE+LLEKETMSGDEFRAILSEF EIP ENRV
Sbjct: 630 IRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENRV 671

Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 96/103 (93%), Gaps = 1/103 (0%)

Query: 1   MVTTFGMSEIGPWSLVD-GSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV TFGMS+IGPWSL+D G+QSGDVIMRMMARNSMSEKLA DID AVKRLSD AYEIALS
Sbjct: 564 MVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALS 623

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
           QIR+NREA+DKIVEVLLEKET+SGDEFRAILSEF EIP ENRV
Sbjct: 624 QIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRV 666

Probable ATP-dependent zinc metallopeptidase.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 92/102 (90%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
           MVTTFGMS+IGPWSL+D S   DVIMRMMARNSMSEKLA DID+AVK+LSD AYEIALS 
Sbjct: 577 MVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSH 636

Query: 61  IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
           I+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP ENRV
Sbjct: 637 IKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENRV 678

Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions, but not involved in thermotolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q67WJ2|FTSH6_ORYSJ ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MVTTFGMSEIGPWSLVD-GSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVT FGMSEIGPW+L +  +Q GDV++RM+AR+SMSE+LAADIDAAV+ + D AYE+A +
Sbjct: 573 MVTAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKA 632

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENR 101
            +R NR AID++V+VL+EKET+ GDEFRAILSE V+I  E R
Sbjct: 633 HVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKERR 674

Probable ATP-dependent zinc metallopeptidase.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q1PDW5|FTSH6_ARATH ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 82/98 (83%), Gaps = 1/98 (1%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVT FGMSEIGPW+L D + +  DV++RM+ARNSMSEKLA DID+ VK++   AYE+A  
Sbjct: 574 MVTMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKK 633

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 97
            +RNNREAIDK+V+VLLEKET++GDEFRAILSE+ + P
Sbjct: 634 HVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQP 671

Probable ATP-dependent zinc metallopeptidase. Involved in the degradation of the light-harvesting complex of photosystem II (LHC II) during senescence or high light acclimation.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q55700|FTSH2_SYNY3 ATP-dependent zinc metalloprotease FtsH 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ftsH2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 76/108 (70%), Gaps = 4/108 (3%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIAL 58
           MVT FGMS +GP SL   S  G+V +   +M R+  SE++A  IDA V++L+++ +++A 
Sbjct: 522 MVTRFGMSNLGPISLE--SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMAR 579

Query: 59  SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAV 106
             ++  RE +D++V++L+EKET+ G+EFR I++E+ E+P + ++ P +
Sbjct: 580 KIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQLIPQL 627

Plays a role in the selective replacement of photosystem II (PSII) protein D1 in the PSII repair cycle following visible-light and UV-B induced damage. If damaged D1 is not removed then new D1 cannot be inserted to restore the PSII reaction center. Seems to also degrade damaged and/or unassembled PSII proteins D2 and PsbB (CP47). May recognize D1 via its first 20 amino acids, as deletion of these prevents the PSII repair cycle. Also seems to degrade cytoplasmic GGPS, glucosylglycerol-phosphate synthase.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P49825|FTSH_ODOSI ATP-dependent zinc metalloprotease FtsH OS=Odontella sinensis GN=ftsH PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIM--RMMARNSMSEKLAADIDAAVKRLSDRAYEIAL 58
           MVT FGMS IGP +L D S +G V +   M + +  +E +A  ID  V+++    YE A+
Sbjct: 536 MVTRFGMSNIGPLALEDES-TGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAI 594

Query: 59  SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
             + +NR  ID IVE LL+KETM GDEFR +LS +  +P++N
Sbjct: 595 EIVLDNRVVIDLIVEKLLDKETMDGDEFRELLSTYTILPNKN 636

Acts as a processive, ATP-dependent zinc metallopeptidase.

Odontella sinensis (taxid: 2839)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q1XDF9|FTSH_PORYE ATP-dependent zinc metalloprotease FtsH OS=Porphyra yezoensis GN=ftsH PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 4/102 (3%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIAL 58
           MVT FGMS+IGP SL   SQ GD  + R M   S  S+++A +ID  V+ +    Y  A 
Sbjct: 523 MVTRFGMSKIGPLSLE--SQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAK 580

Query: 59  SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
             I +NR  ID++V++L+EKET+ G+EFR I+ E+  IP +N
Sbjct: 581 HIIIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEYTAIPEKN 622

Acts as a processive, ATP-dependent zinc metallopeptidase.

Porphyra yezoensis (taxid: 2788)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P51327|FTSH_PORPU ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea GN=ftsH PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 66/102 (64%), Gaps = 4/102 (3%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIAL 58
           MVT FGMS+IGP SL   SQ  D  + R M   S  S+++A +ID  V+ +    Y+ A 
Sbjct: 523 MVTRFGMSKIGPLSLE--SQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAK 580

Query: 59  SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
             +++NR  +D++V++L+EKET+ G+EFR I+ E+  IP +N
Sbjct: 581 KIVKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEYTAIPEKN 622

Acts as a processive, ATP-dependent zinc metallopeptidase.

Porphyra purpurea (taxid: 2787)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|O78516|FTSH_GUITH ATP-dependent zinc metalloprotease FtsH OS=Guillardia theta GN=ftsH PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 4/101 (3%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIAL 58
           MVT FGMS IGP SL   SQ+ D  + R M  +S  SE +A+ ID  V+ +    +   +
Sbjct: 523 MVTRFGMSNIGPLSLE--SQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETV 580

Query: 59  SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSE 99
             I++NR  IDK+V++L+EKET+ GDEFR I+ +F  +P +
Sbjct: 581 QIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDFTSLPEK 621

Acts as a processive, ATP-dependent zinc metallopeptidase.

Guillardia theta (taxid: 55529)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
4325041	693	FtsH-like protein Pftf precursor [Nicoti	0.982	0.161	0.858	7e-49
356530274	688	PREDICTED: ATP-dependent zinc metallopro	0.982	0.162	0.848	3e-48
359806106	690	ATP-dependent zinc metalloprotease FTSH	0.982	0.162	0.848	5e-48
3808101	693	chloroplast protease [Capsicum annuum]	0.982	0.161	0.858	9e-48
255558698	701	Cell division protein ftsH, putative [Ri	0.982	0.159	0.840	1e-47
356524974	696	PREDICTED: ATP-dependent zinc metallopro	0.982	0.160	0.823	7e-47
84468324	702	putative zinc dependent protease [Trifol	0.982	0.159	0.840	7e-47
225446693	694	PREDICTED: ATP-dependent zinc metallopro	0.982	0.161	0.831	8e-47
302143466	333	unnamed protein product [Vitis vinifera]	0.982	0.336	0.831	9e-47
147809607	694	hypothetical protein VITISV_000418 [Viti	0.982	0.161	0.831	9e-47

>gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV TFGMSE+GPWSL+D S QSGDVIMRMMARNSMSEKLA DID AVKRLSD AYEIAL+
Sbjct: 581 MVVTFGMSELGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDGAVKRLSDSAYEIALT 640

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
            IRNNREAIDKIVEVLLEKETM+GDEFRAILSEFVEIP+ENRVAP VP P +V
Sbjct: 641 HIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVAPVVPTPATV 693

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530274|ref|XP_003533707.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, chloroplastic-like [Glycine max]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 103/112 (91%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
           MVTTFGMS+IGPWSLVD S   DVIMRMMARNSMSEKLA DIDAAVKRLSD AYEIALSQ
Sbjct: 577 MVTTFGMSDIGPWSLVDSSAQSDVIMRMMARNSMSEKLAEDIDAAVKRLSDEAYEIALSQ 636

Query: 61  IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
           IR+NREAIDKIVEVLLE ETMSGDEFRA+LSEFVEIP+ENRV P+ P+P++V
Sbjct: 637 IRSNREAIDKIVEVLLETETMSGDEFRALLSEFVEIPAENRVPPSTPSPVAV 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806106|ref|NP_001241188.1| ATP-dependent zinc metalloprotease FTSH 8, chloroplastic-like [Glycine max] gi|333973889|gb|AEG42190.1| filamentation temperature-sensitive H [Glycine max]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 103/112 (91%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
           MVTTFGMS+IGPWSL+D S   DVIMRMMARNSMSEKLA DIDAAVKRLSD AYEIALSQ
Sbjct: 579 MVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDAAVKRLSDEAYEIALSQ 638

Query: 61  IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
           IR+NREAIDKIVEVLLEKETMSGDEFRA+LSEFVEIP+ENRV P+ P+P+ V
Sbjct: 639 IRSNREAIDKIVEVLLEKETMSGDEFRALLSEFVEIPAENRVPPSTPSPVVV 690

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV TFGMSE+GPWSL+D S QSGDVIMRMMARNSMSEKLA DIDAAVKRLSD AYEIALS
Sbjct: 581 MVVTFGMSELGPWSLMDASAQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDSAYEIALS 640

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
           QIR+NREAIDKIVEVLLE+ETM+GDEFRAILSEFVEIP+ENRV  AVP P +V
Sbjct: 641 QIRSNREAIDKIVEVLLEQETMTGDEFRAILSEFVEIPAENRVPAAVPTPAAV 693

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis] gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/113 (84%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVTTFGMSEIGPWSL+D S QS DVIMRMMARNSMSE+LA DID+A+KRLSD AYEIALS
Sbjct: 589 MVTTFGMSEIGPWSLMDSSAQSADVIMRMMARNSMSERLAEDIDSAIKRLSDSAYEIALS 648

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
            IRNNREAIDKIVEVLLEKETM+GDEFRAILSEFVEIP+ENRV P+V  P++V
Sbjct: 649 HIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPPSVSTPVTV 701

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524974|ref|XP_003531102.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Glycine max]

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVTTFGMS+IGPWSL++ S Q GDVIMRMMARNSMSE+LA DIDAA+KR+SD AYEIAL 
Sbjct: 584 MVTTFGMSDIGPWSLMEPSAQGGDVIMRMMARNSMSERLAEDIDAAIKRISDEAYEIALE 643

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
            IRNNREAIDKIVEVLLEKET+SGDEFRAILSEFVEIP+ENRVAP+ P P +V
Sbjct: 644 HIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEIPAENRVAPSTPVPATV 696

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense]

 Score =  190 bits (483), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 95/113 (84%), Positives = 100/113 (88%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV TFGMS+IGPWSL+D S QSGDVIMRMMARNSMSEKLA DID AVKRLSD AYEIAL 
Sbjct: 590 MVVTFGMSDIGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALE 649

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
           QIRNNREAIDKIVEVLLEKET+SGDEFRA+LSEF EIP ENRV PA P P+ V
Sbjct: 650 QIRNNREAIDKIVEVLLEKETLSGDEFRALLSEFTEIPVENRVPPATPLPVPV 702

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446693|ref|XP_002282107.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Vitis vinifera]

 Score =  190 bits (483), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVTTFGMS+IGPWSL+D S QS DVIMRMMARNSMSEKLA DID AVKR+SD AYEIAL+
Sbjct: 582 MVTTFGMSDIGPWSLMDTSAQSADVIMRMMARNSMSEKLAEDIDTAVKRISDDAYEIALT 641

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
            IRNNREAIDKIVEVLLEKETM+GDEFRAILSEFVEIP+ENRV  +VP+P++V
Sbjct: 642 HIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPASVPSPVTV 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143466|emb|CBI22027.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVTTFGMS+IGPWSL+D S QS DVIMRMMARNSMSEKLA DID AVKR+SD AYEIAL+
Sbjct: 221 MVTTFGMSDIGPWSLMDTSAQSADVIMRMMARNSMSEKLAEDIDTAVKRISDDAYEIALT 280

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
            IRNNREAIDKIVEVLLEKETM+GDEFRAILSEFVEIP+ENRV  +VP+P++V
Sbjct: 281 HIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPASVPSPVTV 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera]

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVTTFGMS+IGPWSL+D S QS DVIMRMMARNSMSEKLA DID AVKR+SD AYEIAL+
Sbjct: 582 MVTTFGMSDIGPWSLMDTSAQSADVIMRMMARNSMSEKLAEDIDTAVKRISDDAYEIALT 641

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSV 112
            IRNNREAIDKIVEVLLEKETM+GDEFRAILSEFVEIP+ENRV  +VP+P++V
Sbjct: 642 HIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIPAENRVPASVPSPVTV 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2009235	685	FTSH8 "FTSH protease 8" [Arabi	0.885	0.147	0.871	5.9e-41
TAIR|locus:2052806	695	VAR2 "VARIEGATED 2" [Arabidops	0.885	0.145	0.821	1.4e-38
UNIPROTKB|Q55700	627	ftsH2 "ATP-dependent zinc meta	0.833	0.151	0.424	1.6e-16
UNIPROTKB|P37476	637	ftsH "ATP-dependent zinc metal	0.859	0.153	0.310	3.6e-07
UNIPROTKB|Q3AFJ8	619	ftsH "ATP-dependent zinc metal	0.798	0.147	0.329	5.6e-07
TIGR_CMR|CHY_0214	619	CHY_0214 "cell division protei	0.798	0.147	0.329	5.6e-07
TIGR_CMR|CJE_1259	645	CJE_1259 "cell division protei	0.807	0.142	0.301	3.4e-06
TIGR_CMR|BA_0064	633	BA_0064 "cell division protein	0.833	0.150	0.3	6.9e-06
UNIPROTKB|P0C5C0	760	ftsH "ATP-dependent zinc metal	0.833	0.125	0.33	8.7e-06
TAIR|locus:2011952	716	FTSH1 "FTSH protease 1" [Arabi	0.763	0.121	0.315	1e-05

TAIR|locus:2009235 FTSH8 "FTSH protease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 88/101 (87%), Positives = 93/101 (92%)

Query:     1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
             MVTTFGMSEIGPWSL+D S+  DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQ
Sbjct:   570 MVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQ 629

Query:    61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENR 101
             IRNNREA+DKIVE+LLEKETMSGDEFRAILSEF EIP ENR
Sbjct:   630 IRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENR 670

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0004176 "ATP-dependent peptidase activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2052806 VAR2 "VARIEGATED 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 83/101 (82%), Positives = 91/101 (90%)

Query:     1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
             MVTTFGMS+IGPWSL+D S   DVIMRMMARNSMSEKLA DID+AVK+LSD AYEIALS 
Sbjct:   577 MVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSH 636

Query:    61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENR 101
             I+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP ENR
Sbjct:   637 IKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENR 677

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0004176 "ATP-dependent peptidase activity" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010205 "photoinhibition" evidence=IMP

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA;TAS

GO:0016020 "membrane" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0010206 "photosystem II repair" evidence=IMP

UNIPROTKB|Q55700 ftsH2 "ATP-dependent zinc metalloprotease FtsH 2" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 214 (80.4 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 42/99 (42%), Positives = 71/99 (71%)

Query:     1 MVTTFGMSEIGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIAL 58
             MVT FGMS +GP SL   S  G+V +   +M R+  SE++A  IDA V++L+++ +++A 
Sbjct:   522 MVTRFGMSNLGPISLE--SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMAR 579

Query:    59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 97
               ++  RE +D++V++L+EKET+ G+EFR I++E+ E+P
Sbjct:   580 KIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVP 618

GO:0010206 "photosystem II repair" evidence=IMP

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009523 "photosystem II" evidence=IDA

UNIPROTKB|P37476 ftsH "ATP-dependent zinc metalloprotease FtsH" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 32/103 (31%), Positives = 54/103 (52%)

Query:     1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSM--SEKLAADIDAAVKRLSDRAYEIA 57
             MVT FGMSE +GP      SQ G V +     N    S+++A +ID  ++R+    YE A
Sbjct:   510 MVTEFGMSEKLGPLQFGQ-SQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERA 568

Query:    58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
                +  NR+ ++ I + LL+ ET+  ++ + ++     +P  N
Sbjct:   569 KQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHGT-LPERN 610

GO:0008233 "peptidase activity" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IDA

GO:0030428 "cell septum" evidence=IDA

GO:0043934 "sporulation" evidence=IMP

UNIPROTKB|Q3AFJ8 ftsH "ATP-dependent zinc metalloprotease FtsH" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 125 (49.1 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 31/94 (32%), Positives = 54/94 (57%)

Query:     1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARN-SMSEKLAADIDAAVKRLSDRAYEIAL 58
             MV  +GMSE +GP +   G+++   + R +AR+ + SE++A  ID  V+++ D  Y  A 
Sbjct:   507 MVMEYGMSEELGPLTFGKGTEAV-FLGRDLARDRNYSEEIAYTIDKEVRKIIDSCYSRAE 565

Query:    59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
               ++ N   +  +   L+E ETM G+EF  ++ E
Sbjct:   566 EILKKNINVLHLVATKLMEVETMEGEEFEKLMKE 599

GO:0000910 "cytokinesis" evidence=ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

TIGR_CMR|CHY_0214 CHY_0214 "cell division protein FtsH" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 125 (49.1 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 31/94 (32%), Positives = 54/94 (57%)

Query:     1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARN-SMSEKLAADIDAAVKRLSDRAYEIAL 58
             MV  +GMSE +GP +   G+++   + R +AR+ + SE++A  ID  V+++ D  Y  A 
Sbjct:   507 MVMEYGMSEELGPLTFGKGTEAV-FLGRDLARDRNYSEEIAYTIDKEVRKIIDSCYSRAE 565

Query:    59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
               ++ N   +  +   L+E ETM G+EF  ++ E
Sbjct:   566 EILKKNINVLHLVATKLMEVETMEGEEFEKLMKE 599

GO:0000910 "cytokinesis" evidence=ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

TIGR_CMR|CJE_1259 CJE_1259 "cell division protein FtsH" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query:     1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
             M++ +GMSEI    +++  Q    +         SEK+A  +D  VK+  D  Y+     
Sbjct:   530 MISMYGMSEIAGLMVLE-KQRNTFLSGGQTIKDYSEKMAESLDDYVKKTLDERYKDVKDT 588

Query:    61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93
             +   + AI+ +V  L E+ET+ G++ R I+ EF
Sbjct:   589 LNTYKGAIETMVAALYEEETIEGNKVREIIKEF 621

GO:0000910 "cytokinesis" evidence=ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

TIGR_CMR|BA_0064 BA_0064 "cell division protein FtsH" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 30/100 (30%), Positives = 52/100 (52%)

Query:     1 MVTTFGMSE-IGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
             MVT FGMS+ +GP      SQ G V +     +  + S+ +A +ID  ++ +    Y  A
Sbjct:   511 MVTEFGMSDKLGPMQF-GSSQGGQVFLGRDFHSEQNYSDAIAHEIDMEMQTIMKECYARA 569

Query:    58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 97
                + +NR+ +D I + LLE ET+  ++    L ++  +P
Sbjct:   570 KQILTDNRDKLDLIAKTLLEVETLDAEQINH-LCDYGRLP 608

GO:0000910 "cytokinesis" evidence=ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|P0C5C0 ftsH "ATP-dependent zinc metalloprotease FtsH" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 115 (45.5 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 33/100 (33%), Positives = 55/100 (55%)

Query:     1 MVTTFGMS-EIGPWSLVDGSQSGDVIM-RMMARN-SMSEKLAADIDAAVKRLSDRAYEIA 57
             MVT FGMS ++G  ++  GS+ GD  + R M      S ++A +ID  V++L + A+  A
Sbjct:   512 MVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEA 569

Query:    58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 97
                +   R+ +D +   LLEKET+   E  +I ++  + P
Sbjct:   570 WEILTEYRDVLDTLAGELLEKETLHRPELESIFADVEKRP 609

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006508 "proteolysis" evidence=IMP;IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0040007 "growth" evidence=IMP

TAIR|locus:2011952 FTSH1 "FTSH protease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 29/92 (31%), Positives = 53/92 (57%)

Query:     1 MVTTFGMSE-IGPWSLVDGSQSGDVIM--RMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
             M+  FG S+ IG  ++  G   G+  M  +M ++   S   A  +DA V+ L ++AY+ A
Sbjct:   616 MIERFGFSKKIGQVAV--GGPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRA 673

Query:    58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 89
                I  + + + K+ ++L+EKET+ G+EF ++
Sbjct:   674 TEIITTHIDILHKLAQLLIEKETVDGEEFMSL 705

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0004176 "ATP-dependent peptidase activity" evidence=ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0010206 "photosystem II repair" evidence=TAS

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q655S1	FTSH2_ORYSJ	3, ., 4, ., 2, 4, ., -	0.8737	0.8947	0.1508	yes	no
Q8W585	FTSH8_ARATH	3, ., 4, ., 2, 4, ., -	0.8725	0.8947	0.1489	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam01434	212	pfam01434, Peptidase_M41, Peptidase family M41	5e-28
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	2e-20
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	2e-18
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	2e-16

>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41

 Score =  101 bits (253), Expect = 5e-28
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVT FGMS+ +GP SL D      +   M  R   SE+ A  ID  V+RL + AYE A  
Sbjct: 123 MVTEFGMSDKLGPVSLEDSDGEVFLGRGMGKRKEYSEETADIIDEEVRRLLEEAYERAKE 182

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAI 89
            +  NR+ +D + E LLEKET+  +EFR +
Sbjct: 183 ILTENRDELDALAEALLEKETLDAEEFREL 212

Length = 212

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNS-MSEKLAADIDAAVKRLSDRAYEIALS 59
           MVT FGMS IGP SL   + +   + R M RNS  SE++A  ID  V+ +    Y+ A  
Sbjct: 533 MVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQ 592

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
            +++NR  ID +VE+LL+KET+ GDEFR I++ +  +P + 
Sbjct: 593 ILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTILPPKK 633

Length = 638

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
           MVT +GMS+ +GP +   GS  GDV +          SE+ A +ID  VKR+ + AY+ A
Sbjct: 404 MVTEWGMSDKLGPVAY--GSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRA 461

Query: 58  LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
              +  NR+ ++ + + LLEKET++ +E + +L+
Sbjct: 462 KQILTENRDELELLAKALLEKETITREEIKELLA 495

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MVT +GMS  +GP +       G  + R     + SE+ A +ID  VK + D AYE A  
Sbjct: 500 MVTEYGMSAKLGPVAY--EQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKE 557

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
            +  N++A++ + E+LLEKET+  +E + IL+ 
Sbjct: 558 LLNENKDALETLAEMLLEKETIDAEEIKDILAG 590

Length = 596

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.84
CHL00176	638	ftsH cell division protein; Validated	99.82
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.8
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	99.75
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.74
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.66
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.65
PF10415	55	FumaraseC_C: Fumarase C C-terminus; InterPro: IPR0	84.14
smart00114	88	CARD Caspase recruitment domain. Motif contained i	83.85
cd08327	94	CARD_RAIDD Caspase activation and recruitment doma	82.58

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.84  E-value=6e-21  Score=162.68  Aligned_cols=94  Identities=24%  Similarity=0.382  Sum_probs=83.1

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHH-HhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK   78 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~-~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~   78 (114)
                      ||++||||+ +|++.|...+.. .|++ .....+.||++|++.||.||++||++||++|++||++|++.|++||++|+++
T Consensus       503 mv~~~Gms~~lg~~~~~~~~~~-~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~  581 (644)
T PRK10733        503 MVTQWGFSEKLGPLLYAEEEGE-VFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKY  581 (644)
T ss_pred             HHHHhCCCccccchhhcccccc-cccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            899999999 999999765421 2664 3445678999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHhhcccC
Q 033676           79 ETMSGDEFRAILSEFVE   95 (114)
Q Consensus        79 EtL~g~e~~~ll~~~~~   95 (114)
                      |||+++||++++.....
T Consensus       582 etl~~~ei~~i~~~~~~  598 (644)
T PRK10733        582 ETIDAPQIDDLMARRDV  598 (644)
T ss_pred             ceeCHHHHHHHHhcCCC
Confidence            99999999999987643

>CHL00176 ftsH cell division protein; Validated

Probab=99.82  E-value=2.3e-20  Score=159.20  Aligned_cols=100  Identities=40%  Similarity=0.671  Sum_probs=86.5

Q ss_pred             CccccCCCCCCcccccCCCCchhHHHH-hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSEIGPWSLVDGSQSGDVIMR-MMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~lG~v~~~~~~~~~~fl~~-~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||++||++|...+....|++. +...+.||+++++.||.||+++|+.||++|++||++|++.|++||++|+++|
T Consensus       533 mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~E  612 (638)
T CHL00176        533 MVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKE  612 (638)
T ss_pred             HHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence            899999999999999765421126643 4456789999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcccCCCCcC
Q 033676           80 TMSGDEFRAILSEFVEIPSEN  100 (114)
Q Consensus        80 tL~g~e~~~ll~~~~~~~~~~  100 (114)
                      ||+++||+++++.+...|+.+
T Consensus       613 tl~~~ei~~il~~~~~~~~~~  633 (638)
T CHL00176        613 TIDGDEFREIVNSYTILPPKK  633 (638)
T ss_pred             ccCHHHHHHHHhhcCCCCCCc
Confidence            999999999998876655443

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.9e-19  Score=152.30  Aligned_cols=93  Identities=35%  Similarity=0.526  Sum_probs=85.2

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||+ +|++.|...++.  |++.....++||++|++.||.||+++++.||+++++||.+|++.++.+++.|+++|
T Consensus       500 mVt~~Gms~~lG~v~~~~~~~~--flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~E  577 (596)
T COG0465         500 MVTEYGMSAKLGPVAYEQVEGV--FLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKE  577 (596)
T ss_pred             hhhhcCcchhhCceehhhcccc--cccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            899999999 999999887543  88554477899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcccC
Q 033676           80 TMSGDEFRAILSEFVE   95 (114)
Q Consensus        80 tL~g~e~~~ll~~~~~   95 (114)
                      ||++++|+.|+.....
T Consensus       578 ti~~~~i~~i~~~~~~  593 (596)
T COG0465         578 TIDAEEIKDILAGRKL  593 (596)
T ss_pred             ccCHHHHHHHHhcccC
Confidence            9999999999976643

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=99.75  E-value=1.5e-18  Score=130.40  Aligned_cols=89  Identities=37%  Similarity=0.562  Sum_probs=72.3

Q ss_pred             CccccCCCC-CCcccccCCCCchhHH-HHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVI-MRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK   78 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl-~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~   78 (114)
                      ||..||||+ +|++.+........|+ +.+....++|+.+...+|.+|+++|+.+|++|++||++||+.|++||+.|+++
T Consensus       123 mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~  202 (213)
T PF01434_consen  123 MVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEK  202 (213)
T ss_dssp             HHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCceeeeeccccccccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            789999999 9999987643211144 22334568999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHH
Q 033676           79 ETMSGDEFRAI   89 (114)
Q Consensus        79 EtL~g~e~~~l   89 (114)
                      |+|+++||++|
T Consensus       203 ~~L~~~ei~~I  213 (213)
T PF01434_consen  203 ETLSGEEIEEI  213 (213)
T ss_dssp             SEEEHHHHHHH
T ss_pred             CeeCHHHHhhC
Confidence            99999999976

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.9e-18  Score=143.14  Aligned_cols=83  Identities=37%  Similarity=0.578  Sum_probs=76.8

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||+ +||+++....++          ..++++|...||.||++||.++|+||+.||+.|...++.||++||++|
T Consensus       652 MVt~fGMSd~vG~v~~~~~~~~----------~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYE  721 (752)
T KOG0734|consen  652 MVTKFGMSDKVGPVTLSAEDNS----------SSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYE  721 (752)
T ss_pred             HHHHcCccccccceeeeccCCC----------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            899999999 999999876422          467888999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcc
Q 033676           80 TMSGDEFRAILSEF   93 (114)
Q Consensus        80 tL~g~e~~~ll~~~   93 (114)
                      ||+++||.+++.+.
T Consensus       722 TL~A~eik~vl~g~  735 (752)
T KOG0734|consen  722 TLDAKEIKRVLKGK  735 (752)
T ss_pred             cCCHHHHHHHHhcc
Confidence            99999999999755

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.66  E-value=2.4e-16  Score=130.47  Aligned_cols=90  Identities=32%  Similarity=0.536  Sum_probs=78.7

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHH-HhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK   78 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~-~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~   78 (114)
                      ||++|||++ +|++++...... .|++ .+...+.||+.+...+|.+|+++|+.+|++|++||++|++.|++||++|+++
T Consensus       404 mv~~~Gm~~~~g~~~~~~~~~~-~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~  482 (495)
T TIGR01241       404 MVTEWGMSDKLGPVAYGSDGGD-VFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEK  482 (495)
T ss_pred             HHHHhCCCcccCceeeccCccc-cccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            789999999 999999764311 2552 2344679999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHhh
Q 033676           79 ETMSGDEFRAILS   91 (114)
Q Consensus        79 EtL~g~e~~~ll~   91 (114)
                      |+|+++||++|++
T Consensus       483 e~L~~~ei~~il~  495 (495)
T TIGR01241       483 ETITREEIKELLA  495 (495)
T ss_pred             CeeCHHHHHHHhC
Confidence            9999999999874

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=3e-16  Score=135.55  Aligned_cols=93  Identities=45%  Similarity=0.552  Sum_probs=83.8

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||+ +|++++....     .+.+...++||+.+++.||.||++|++.||++|.++|++|++.|++||+.|+++|
T Consensus       661 ~V~~~Gms~kig~~~~~~~~-----~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke  735 (774)
T KOG0731|consen  661 MVASFGMSEKIGPISFQMLL-----PGDESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKE  735 (774)
T ss_pred             HHHHcCcccccCceeccCcc-----cccccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            799999999 9999994432     1234457899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcccCCCC
Q 033676           80 TMSGDEFRAILSEFVEIPS   98 (114)
Q Consensus        80 tL~g~e~~~ll~~~~~~~~   98 (114)
                      +|+++++.++++.++..++
T Consensus       736 ~l~~ee~~~ll~~~~~~~~  754 (774)
T KOG0731|consen  736 VLTGEEIIALLGERPPGMP  754 (774)
T ss_pred             hccHHHHHHHhccCCCccc
Confidence            9999999999999887764

>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle

Probab=84.14  E-value=3.2  Score=24.91  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676           53 AYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF   93 (114)
Q Consensus        53 ~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~   93 (114)
                      -|++|-+|-++-...=..+.+.++++.-|+.+++.++++..
T Consensus        10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p~   50 (55)
T PF10415_consen   10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDPE   50 (55)
T ss_dssp             HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSHH
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCHH
Confidence            36666666666555556778888899999999999999754

The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....

>smart00114 CARD Caspase recruitment domain

Probab=83.85  E-value=3.5  Score=26.36  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             HHHHHHHHhHHHH------HHHHHHHHHHhcCCHHHHHHHhhc
Q 033676           56 IALSQIRNNREAI------DKIVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        56 ~a~~iL~~nr~~L------~~la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      +.+++|..||..|      +-+-+.|+++.+|+.++...+-..
T Consensus         4 ~~r~~L~k~r~~l~~~l~~~~vld~L~~~~Vlt~~e~e~i~~~   46 (88)
T smart00114        4 RDKRLLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAA   46 (88)
T ss_pred             HHHHHHHHhHHHHHHHcchhHHHHHHHHcCCCCHHHHHHHHcc
Confidence            4456667776655      568999999999999999988653

Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.

>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain

Probab=82.58  E-value=4.1  Score=27.16  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhHHHHHH-------HHHHHHHHhcCCHHHHHHHhhc
Q 033676           55 EIALSQIRNNREAIDK-------IVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        55 ~~a~~iL~~nr~~L~~-------la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      ++-+++|.+||..|-+       +.+.|+++++||.++...|-..
T Consensus         3 e~hr~~Lr~~R~~Lv~dl~~~~~v~~~L~~~gIlT~~~~e~I~a~   47 (94)
T cd08327           3 PKHKQLLRSQRLELSAELLVDGLVIQYLYQEGILTESHVEEIESQ   47 (94)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCCCCHHHHHHHHcc
Confidence            3556788888876653       5567999999999999988753

Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		5e-12
2ce7_A	476	Edta Treated Length = 476		5e-12
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		2e-06
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		2e-06
2di4_A	238	Crystal Structure Of The Ftsh Protease Domain Lengt		3e-04

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 1   MVTTFGMSE-IGPWSLVDGSQS---GDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEI 56
           MV   GMSE +GP +     Q    G  I R+  RN  SE++A+ ID  VK++    YE 
Sbjct: 366 MVCQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYER 422
Query: 57  ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 95
           A   IR  R+ +D IVE+LLEKET+ GDE R ILSE  E
Sbjct: 423 AKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 461

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 1   MVTTFGMSE-IGPWSLVDGSQS---GDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEI 56
           MV   GMSE +GP +     Q    G  I R+  RN  SE++A+ ID  VK++    YE 
Sbjct: 366 MVCQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYER 422
Query: 57  ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 95
           A   IR  R+ +D IVE+LLEKET+ GDE R ILSE  E
Sbjct: 423 AKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 461

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1   MVTTFGMS-EIGP--WSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
           M+T +GM  E GP  +++ + +  G   +R       SE+ A  ID AV+RL +  Y+  
Sbjct: 379 MITEWGMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRV 433
Query: 58  LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
            + +   RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 434 KALLLEKREVLERVAETLLERETLTAEEFQRVV 466

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1   MVTTFGMS-EIGP--WSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
           M+T +GM  E GP  +++ + +  G   +R       SE+ A  ID AV+RL +  Y+  
Sbjct: 388 MITEWGMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRV 442
Query: 58  LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
            + +   RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 443 KALLLEKREVLERVAETLLERETLTAEEFQRVV 475

>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain Length = 238

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV+ +GMS+ +GP ++     +   +  M      S  L  +ID  VKR+    YE A +
Sbjct: 111 MVSMWGMSDKVGPIAI--RRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKA 168
Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEF 86
            +   +E +  +V+ LLEKET++ +EF
Sbjct: 169 IVEEYKEPLKAVVKKLLEKETITCEEF 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	3e-20
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	4e-20
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	1e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 83.4 bits (207), Expect = 3e-20
 Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARN-SMSEKLAADIDAAVKRLSDRAYEIA 57
           MV   GMSE +GP +   G +  +V + + + R  + SE++A+ ID  VK++    YE A
Sbjct: 366 MVCQLGMSEELGPLAW--GKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERA 423

Query: 58  LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSE 99
              IR  R+ +D IVE+LLEKET+ GDE R ILSE  E   E
Sbjct: 424 KEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEKVVE 465

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1 Length = 238

 Score = 80.7 bits (200), Expect = 4e-20
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV+ +GMS+ +GP ++     +   +  M      S  L  +ID  VKR+    YE A +
Sbjct: 111 MVSMWGMSDKVGPIAI--RRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKA 168

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAP 109
            +   +E +  +V+ LLEKET++ +EF  +   +     +      +   
Sbjct: 169 IVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIELKDKCKKEELFDK 218

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           M+T +GM    GP +     +    +     R   SE+ A  ID AV+RL +  Y+   +
Sbjct: 379 MITEWGMHPEFGPVAY--AVREDTYLGGYDVRQ-YSEETAKRIDEAVRRLIEEQYQRVKA 435

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPA 108
            +   RE ++++ E LLE+ET++ +EF+ ++        E       P 
Sbjct: 436 LLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLEAPEEAREEREPP 484

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 69/180 (38%)

Query: 2   VTTFGMSEIGPWSLV--------------DG--------SQSGDVIMRMM---------- 29
           V   G+   G   +                           S + ++ M+          
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 30  --ARNSMSEKLAADIDAAVKRLS----DRAYEIALSQIRN--NREAID------KIV--- 72
             +R+  S  +   I +    L      + YE  L  + N  N +A +      KI+   
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 73  ---------------EVLLEK--ETMSGDEFRAILSEFVEIPSEN--RVAPAVPAPLSVS 113
                           + L+    T++ DE +++L ++++   ++  R       P  +S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEK-----LAADIDAAVKRLSDRAYE 55
           ++TT           +  + +  + +      +++       L   +D   + L      
Sbjct: 269 LLTT---RFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 56  I---ALSQI---------------RNNREAIDKIVEVLLEKETMSGDEFR------AILS 91
                LS I                 N + +  I+E  L    +   E+R      ++  
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFP 382

Query: 92  EFVEIPSE 99
               IP+ 
Sbjct: 383 PSAHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	99.91
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.86
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.83
3ygs_P	97	Procaspase 9; apoptosis, caspase activation, caspa	89.93
2p1h_A	94	APAF-1, apoptotic protease-activating factor 1; fo	85.83
3crd_A	100	Raidd; caspase recruitment domain, apoptosis, homo	83.2

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=99.91  E-value=2.1e-24  Score=164.38  Aligned_cols=95  Identities=29%  Similarity=0.454  Sum_probs=80.0

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||+ +||++|...++  .|++.+...++||++|+..||.||++||+.||++|++||++|++.|++||++|+++|
T Consensus       111 MV~~~GMs~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~E  188 (238)
T 2di4_A          111 MVSMWGMSDKVGPIAIRRVAN--PFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKE  188 (238)
T ss_dssp             HHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCCCCCceeecCCcc--ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            899999999 99999986543  377755557899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcccCCC
Q 033676           80 TMSGDEFRAILSEFVEIP   97 (114)
Q Consensus        80 tL~g~e~~~ll~~~~~~~   97 (114)
                      ||+++||++|++.....+
T Consensus       189 tL~~~ei~~il~~~~~~~  206 (238)
T 2di4_A          189 TITCEEFVEVFKLYGIEL  206 (238)
T ss_dssp             EECHHHHHHHHHHHTCCC
T ss_pred             eeCHHHHHHHHccCCCCc
Confidence            999999999998764443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.86  E-value=4.6e-22  Score=164.16  Aligned_cols=107  Identities=26%  Similarity=0.433  Sum_probs=85.5

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||+ +|+++|......  |++.+. .++||++|+..||.||++||++||++|++||++|++.|++||++|+++|
T Consensus       379 mv~~~gm~~~~g~~~~~~~~~~--~~~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e  455 (499)
T 2dhr_A          379 MITEWGMHPEFGPVAYAVREDT--YLGGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERE  455 (499)
T ss_dssp             HHTTSCCCSSSCSCCCCCCCCC--SSCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred             HHHHhCCCCCCCceeecCCCcc--cccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            899999999 999999865433  665433 6789999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcccCCCCcCcCCC-CCCCCc
Q 033676           80 TMSGDEFRAILSEFVEIPSENRVAP-AVPAPL  110 (114)
Q Consensus        80 tL~g~e~~~ll~~~~~~~~~~~~~~-~~~~~~  110 (114)
                      ||+++||++++......+++...+. +-|..+
T Consensus       456 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (499)
T 2dhr_A          456 TLTAEEFQRVVEGLPLEAPEEAREEREPPRVV  487 (499)
T ss_dssp             EECHHHHHHHHTTCCCCCCC------------
T ss_pred             eeCHHHHHHHhccCCCCCcchhhhccCCCCcC
Confidence            9999999999988755544444444 444443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.83  E-value=6.7e-21  Score=156.45  Aligned_cols=91  Identities=44%  Similarity=0.640  Sum_probs=75.9

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHH-HhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK   78 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~-~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~   78 (114)
                      ||++||||+ +|+++|...... .|++ .+...++||++|+..||+||++||++||++|++||++|++.|++||+.|+++
T Consensus       366 mv~~~gm~~~~g~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~  444 (476)
T 2ce7_A          366 MVCQLGMSEELGPLAWGKEEQE-VFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEK  444 (476)
T ss_dssp             HHHTSCCCTTTCSCCCCC--------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcCCceeecCCCcc-ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            899999999 999999765421 2774 3445689999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHhhc
Q 033676           79 ETMSGDEFRAILSE   92 (114)
Q Consensus        79 EtL~g~e~~~ll~~   92 (114)
                      |||+++||+++++.
T Consensus       445 e~l~~~~~~~~~~~  458 (476)
T 2ce7_A          445 ETIEGDELRRILSE  458 (476)
T ss_dssp             SEEEHHHHHHHTC-
T ss_pred             CeeCHHHHHHHhcc
Confidence            99999999999975

>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3

Probab=89.93  E-value=0.57  Score=30.00  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             HHHHHHHHHhHHHHHH------HHHHHHHHhcCCHHHHHHHhhc
Q 033676           55 EIALSQIRNNREAIDK------IVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        55 ~~a~~iL~~nr~~L~~------la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      ++-+++|+.||..|-.      |.+.|+++..|+.++.+.|-..
T Consensus         4 ~~hr~~L~~~r~~Lv~~l~~~~vld~L~~~~vlt~~~~e~I~~~   47 (97)
T 3ygs_P            4 EADRRLLRRCRLRLVEELQVDQLWDVLLSRELFRPHMIEDIQRA   47 (97)
T ss_dssp             HHHHHHHHHTHHHHHHHCCCTTTHHHHHHTTSSCHHHHHHHHTS
T ss_pred             HHHHHHHHHhHHHHHHHCcHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence            3567889999988887      9999999999999999999763

>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A

Probab=85.83  E-value=2.4  Score=26.45  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             HHHHHHhHHH------HHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676           58 LSQIRNNREA------IDKIVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        58 ~~iL~~nr~~------L~~la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      +++|.+||..      ++.|.+.|+++..|+.++...|...
T Consensus         8 r~~L~~~r~~Lv~~l~v~~lld~L~~~~vlt~~~~e~I~~~   48 (94)
T 2p1h_A            8 RNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNE   48 (94)
T ss_dssp             HHHHHHTHHHHHHHCCHHHHHHHHHHHTSSCHHHHHHHHTS
T ss_pred             HHHHHHhHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHcC
Confidence            3444444444      4569999999999999999998764

>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3

Probab=83.20  E-value=0.92  Score=29.03  Aligned_cols=36  Identities=11%  Similarity=0.292  Sum_probs=31.0

Q ss_pred             HHHHHHHhHHHH------HH-HHHHHHHHhcCCHHHHHHHhhc
Q 033676           57 ALSQIRNNREAI------DK-IVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        57 a~~iL~~nr~~L------~~-la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      -+++|..||..|      .. +.+.|+++.+|+.++...|...
T Consensus         5 hr~~L~~~r~~L~~~l~~~~~lld~L~~~~VLt~~~~e~I~~~   47 (100)
T 3crd_A            5 DKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQ   47 (100)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCSSHHHHHHHTSSCHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCcchhHHHHHHHCCCCCHHHHHHHHcC
Confidence            467899999998      44 8999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d2ce7a1	193	a.269.1.1 (A:411-603) Cell division protein FtsH,	4e-23
d2di4a1	202	a.269.1.1 (A:406-607) Cell division protein FtsH,	2e-15

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 193

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 86.2 bits (213), Expect = 4e-23
 Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 1   MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
           MV   GMSE +GP +     Q   +   +    + SE++A+ ID  VK++    YE A  
Sbjct: 101 MVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKE 160

Query: 60  QIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
            IR  R+ +D IVE+LLEKET+ GDE R ILSE
Sbjct: 161 IIRKYRKQLDNIVEILLEKETIEGDELRRILSE 193

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 202

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 66.8 bits (162), Expect = 2e-15
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 1   MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
           MV+ +GMS+      +        +  M      S  L  +ID  VKR+    YE A + 
Sbjct: 102 MVSMWGMSDKVGPIAIRRVA-NPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAI 160

Query: 61  IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
           +   +E +  +V+ LLEKET++ +EF  +   +  I  +++ 
Sbjct: 161 VEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY-GIELKDKC 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.85
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	99.81
d1dgna_	89	Iceberg {Human (Homo sapiens) [TaxId: 9606]}	81.65
d1cy5a_	93	Apoptotic protease activating factor 1, APAF-1 {Hu	81.45

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.85  E-value=2e-21  Score=140.85  Aligned_cols=97  Identities=29%  Similarity=0.458  Sum_probs=81.2

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE   79 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E   79 (114)
                      ||++||||+ +|++.+.....+  +++.+...+++|++++..||++|+++|+.+|++|++||++|+..|++||+.|+++|
T Consensus       102 ~v~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~e  179 (202)
T d2di4a1         102 MVSMWGMSDKVGPIAIRRVANP--FLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKE  179 (202)
T ss_dssp             HHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred             HHHhhCcccccchhhhcccccc--hhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence            789999999 999999765533  33344456799999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHhhcccCCCCc
Q 033676           80 TMSGDEFRAILSEFVEIPSE   99 (114)
Q Consensus        80 tL~g~e~~~ll~~~~~~~~~   99 (114)
                      ||+++||++|+..++..+++
T Consensus       180 tL~~~ei~~il~~~~~~~~~  199 (202)
T d2di4a1         180 TITCEEFVEVFKLYGIELKD  199 (202)
T ss_dssp             EECHHHHHHHHHHHTCCCCC
T ss_pred             ccCHHHHHHHHHHCCCCCcc
Confidence            99999999999988655444

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3e-20  Score=133.92  Aligned_cols=91  Identities=44%  Similarity=0.640  Sum_probs=75.0

Q ss_pred             CccccCCCC-CCcccccCCCCchhHHH-HhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676            1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK   78 (114)
Q Consensus         1 MV~~~GMS~-lG~v~~~~~~~~~~fl~-~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~   78 (114)
                      ||+.||||+ +||+.|....+. .|++ ......++|+.+...+|++|++||+.||++|++||++|+..|++||+.|+++
T Consensus       101 ~v~~~Gm~~~~g~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~  179 (193)
T d2ce7a1         101 MVCQLGMSEELGPLAWGKEEQE-VFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEK  179 (193)
T ss_dssp             HHHTSCCCTTTCSCCCCC--------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHhhCcCCCcCceeeccCCcc-ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            789999999 999999765422 2443 3445678999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHhhc
Q 033676           79 ETMSGDEFRAILSE   92 (114)
Q Consensus        79 EtL~g~e~~~ll~~   92 (114)
                      |||++++|++|+++
T Consensus       180 e~L~g~ei~~il~e  193 (193)
T d2ce7a1         180 ETIEGDELRRILSE  193 (193)
T ss_dssp             SEEEHHHHHHHTC-
T ss_pred             CeeCHHHHHHHHcC
Confidence            99999999999863

>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DEATH domain
superfamily: DEATH domain
family: Caspase recruitment domain, CARD
domain: Iceberg
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.65  E-value=0.64  Score=27.58  Aligned_cols=26  Identities=27%  Similarity=0.578  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676           67 AIDKIVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        67 ~L~~la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      .++.+.+.|+++.+|+.+|...|...
T Consensus        20 ~v~~vlD~L~~~~Vlt~~e~e~I~~~   45 (89)
T d1dgna_          20 TINALLDCLLEDEVISQEDMNKVRDE   45 (89)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHTC
T ss_pred             cHHHHHHHHHHCCCCCHHHHHHHHhc
Confidence            46778899999999999999999753

>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DEATH domain
superfamily: DEATH domain
family: Caspase recruitment domain, CARD
domain: Apoptotic protease activating factor 1, APAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=2.2  Score=25.04  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676           68 IDKIVEVLLEKETMSGDEFRAILSE   92 (114)
Q Consensus        68 L~~la~~Lle~EtL~g~e~~~ll~~   92 (114)
                      .+.+.+.|+++..|+.++.+.|...
T Consensus        22 ~~~vl~~L~~~~vlt~~e~e~I~~~   46 (93)
T d1cy5a_          22 TSYIMDHMISDGFLTISEEEKVRNE   46 (93)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHcc
Confidence            4689999999999999999998753