Citrus Sinensis ID: 033684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQKADP
Secondary Structure (PSIPRED)
ccccccEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEEccccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEccccccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mlegkpvvqetdmpdelQSHVMELAYQAldlhevsdCQSIAHYIKQKfdeayrpawhcvvgkdfgsciTHLCGSLIFFRMEMMEFLVfkdgkdctesKEEAVGMLQKSQKADP
Flexible Loop (DISEMBL)
mlegkpvvqetdmpdELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVgmlqksqkadp
Low Complexity Region (SEG)
MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQKADP
Disordered region (IsUnstruct)
********************VMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDG**********************
Disordered Region (DISOPRED)
***GKPV*QETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKD*************K******
Disordered Region (DISEMBL)
MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDC*******************
Disordered Region (DISPRO)
****KPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQKADP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q22799	89	Dynein light chain 1, cyt	yes	no	0.787	1.0	0.395	2e-16
O02414	89	Dynein light chain LC6, f	N/A	no	0.787	1.0	0.406	4e-16
Q94748	89	Probable dynein light cha	N/A	no	0.787	1.0	0.417	8e-16
Q24117	89	Dynein light chain 1, cyt	yes	no	0.787	1.0	0.395	1e-15
Q94758	89	Dynein light chain OS=Sch	N/A	no	0.787	1.0	0.406	2e-15
P63170	89	Dynein light chain 1, cyt	yes	no	0.787	1.0	0.395	3e-15
P63169	89	Dynein light chain 1, cyt	yes	no	0.787	1.0	0.395	3e-15
P63168	89	Dynein light chain 1, cyt	yes	no	0.787	1.0	0.395	3e-15
P61273	89	Dynein light chain 1, cyt	N/A	no	0.787	1.0	0.395	3e-15
P63167	89	Dynein light chain 1, cyt	yes	no	0.787	1.0	0.395	3e-15

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M++ K V++  DM D++Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.
Caenorhabditis elegans (taxid: 6239)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M E K V++  DMP+++Q   ++ A QAL+   +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

Anthocidaris crassispina (taxid: 7629)

>sp|Q94748|DYL2_SCHMA Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M E K V++  DM +++Q   +  A  ALD +E+   + +A YIK++FD  Y P WHC+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEIE--KDVAAYIKKEFDRKYNPNWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          GK FGS +TH     I+F ++   FL+FK G
Sbjct: 59 GKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Schistosoma mansoni (taxid: 6183)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q94758|DYL1_SCHMA Dynein light chain OS=Schistosoma mansoni GN=DLC PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M E K V++  DM +E+Q   + +A  A+D H++   + IA  IK+ FD  Y P WHC+V
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLE--KDIAANIKKDFDRKYHPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G+ FGS +TH   + I+F ++   FL+FK G
Sbjct: 59 GRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Schistosoma mansoni (taxid: 6183)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Macaca fascicularis (taxid: 9541)

>sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
225440508	113	PREDICTED: dynein light chain LC6, flage	1.0	1.0	0.778	4e-46
351725823	112	uncharacterized protein LOC100527181 [Gl	0.991	1.0	0.758	4e-45
297740296	101	unnamed protein product [Vitis vinifera]	0.884	0.990	0.78	4e-40
147770646	116	hypothetical protein VITISV_024377 [Viti	0.610	0.594	0.768	4e-25
224087545	92	predicted protein [Populus trichocarpa]	0.610	0.75	0.753	9e-25
302759074	90	hypothetical protein SELMODRAFT_227337 [	0.787	0.988	0.561	2e-23
255577973	200	cytoplasmic dynein light chain, putative	0.584	0.33	0.731	6e-23
358249056	95	uncharacterized protein LOC100808818 [Gl	0.787	0.936	0.516	1e-21
226493894	93	dynein light chain LC6, flagellar outer	0.787	0.956	0.550	1e-21
449448176	676	PREDICTED: rho guanine nucleotide exchan	0.787	0.131	0.528	2e-21

>gi|225440508|ref|XP_002272616.1| PREDICTED: dynein light chain LC6, flagellar outer arm-like [Vitis vinifera]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 99/113 (87%)

Query: 1   MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
           MLEGK VV+ETDMP+ +Q+H +ELAYQALDLHEV D Q+IAHYIKQKFDEAY PAWHCVV
Sbjct: 1   MLEGKAVVRETDMPEAMQNHCLELAYQALDLHEVCDRQAIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQKADP 113
           G DFGSCITHLCG+ IFFR+E MEFLVFKDGKD TESKEEA+G+LQ + K D 
Sbjct: 61  GVDFGSCITHLCGNFIFFRVETMEFLVFKDGKDLTESKEEAIGVLQGAGKVDS 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725823|ref|NP_001236082.1| uncharacterized protein LOC100527181 [Glycine max] gi|255631730|gb|ACU16232.1| unknown [Glycine max]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 101/112 (90%)

Query: 1   MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
           MLEGK VV+ETDMP+ +QS+VMELA+QALD HEVSDCQSIAH+I+QK D AY PAW+ VV
Sbjct: 1   MLEGKAVVRETDMPEGMQSYVMELAHQALDAHEVSDCQSIAHFIEQKLDGAYGPAWNSVV 60

Query: 61  GKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQKAD 112
           GKDFGSCITHLCGS IFFR+EMMEFL+FKDGK+ TES+EEA+G+LQK++  D
Sbjct: 61  GKDFGSCITHLCGSFIFFRVEMMEFLIFKDGKNFTESREEAIGVLQKARNCD 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740296|emb|CBI30478.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 88/100 (88%)

Query: 13  MPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLC 72
           MP+ +Q+H +ELAYQALDLHEV D Q+IAHYIKQKFDEAY PAWHCVVG DFGSCITHLC
Sbjct: 1   MPEAMQNHCLELAYQALDLHEVCDRQAIAHYIKQKFDEAYGPAWHCVVGVDFGSCITHLC 60

Query: 73  GSLIFFRMEMMEFLVFKDGKDCTESKEEAVGMLQKSQKAD 112
           G+ IFFR+E MEFLVFKDGKD TESKEEA+G+LQ + K D
Sbjct: 61  GNFIFFRVETMEFLVFKDGKDLTESKEEAIGVLQGAGKVD 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770646|emb|CAN73412.1| hypothetical protein VITISV_024377 [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 58/69 (84%)

Query: 45  KQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGM 104
            QKFDEAY PAWHCVVG DFGSCITHLCG+  FFR+E MEFLVFKDGKD TESKEEA+G+
Sbjct: 48  NQKFDEAYGPAWHCVVGVDFGSCITHLCGNFTFFRVETMEFLVFKDGKDLTESKEEAIGV 107

Query: 105 LQKSQKADP 113
           LQ + K D 
Sbjct: 108 LQGAGKVDS 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087545|ref|XP_002308187.1| predicted protein [Populus trichocarpa] gi|222854163|gb|EEE91710.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 60/69 (86%)

Query: 45  KQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGM 104
           KQKFD+ Y PAWHCVVGKDFG CITHL GS IFFR+EMMEFL+FKDG D +ESKEEA+G+
Sbjct: 24  KQKFDDVYGPAWHCVVGKDFGCCITHLSGSFIFFRVEMMEFLIFKDGGDFSESKEEAIGV 83

Query: 105 LQKSQKADP 113
           LQ+ QK+D 
Sbjct: 84  LQQFQKSDT 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302759074|ref|XP_002962960.1| hypothetical protein SELMODRAFT_227337 [Selaginella moellendorffii] gi|302822260|ref|XP_002992789.1| hypothetical protein SELMODRAFT_272292 [Selaginella moellendorffii] gi|300139434|gb|EFJ06175.1| hypothetical protein SELMODRAFT_272292 [Selaginella moellendorffii] gi|300169821|gb|EFJ36423.1| hypothetical protein SELMODRAFT_227337 [Selaginella moellendorffii]

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          MLEGK V+  TDMP+++Q+  ME A +ALDL+EV DC+ IA +IK+ FD  Y P W C+V
Sbjct: 1  MLEGKAVIGSTDMPEKMQARAMEWASEALDLYEVDDCKEIARHIKKGFDGLYGPGWQCIV 60

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFK 89
          G  FGS ITH CG+ I F +E M FL+FK
Sbjct: 61 GTSFGSFITHSCGTFIHFYLERMAFLLFK 89

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577973|ref|XP_002529858.1| cytoplasmic dynein light chain, putative [Ricinus communis] gi|223530634|gb|EEF32508.1| cytoplasmic dynein light chain, putative [Ricinus communis]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 59/67 (88%)

Query: 46  QKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFKDGKDCTESKEEAVGML 105
           QKFDEA+  AWHCVVGK+FGSCITHLCGS IFFR+EM+EFL+FKD  D +ESKEEA+G++
Sbjct: 133 QKFDEAHGAAWHCVVGKEFGSCITHLCGSFIFFRVEMLEFLIFKDDTDFSESKEEAIGVV 192

Query: 106 QKSQKAD 112
           QK +K D
Sbjct: 193 QKPKKFD 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249056|ref|NP_001240241.1| uncharacterized protein LOC100808818 [Glycine max] gi|255640650|gb|ACU20610.1| unknown [Glycine max]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 63/89 (70%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          MLEGK V+++TDMPD++Q   M  AY+ALDL++V DC SIA +IK++FD  Y   W CVV
Sbjct: 1  MLEGKAVIEDTDMPDKMQIQAMASAYEALDLYDVFDCTSIAAHIKKEFDTKYGSGWQCVV 60

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFK 89
          G  FG   TH  G+ ++F +E + FL+FK
Sbjct: 61 GSSFGCFFTHSKGTFVYFTLETLNFLIFK 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226493894|ref|NP_001150519.1| dynein light chain LC6, flagellar outer arm [Zea mays] gi|195639838|gb|ACG39387.1| dynein light chain LC6, flagellar outer arm [Zea mays] gi|414880405|tpg|DAA57536.1| TPA: putative dynein light chain type 1 family protein [Zea mays]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 64/89 (71%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          MLEGK VV++TDMP ++Q+  M  A +ALD  +V DC+SIA +IK++FD  + P W CVV
Sbjct: 1  MLEGKAVVEDTDMPAKMQAQAMSAASRALDRFDVLDCRSIASHIKKEFDAIHGPGWQCVV 60

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFK 89
          G  FG  ITH  GS I+FR+E + FLVFK
Sbjct: 61 GSGFGCYITHSKGSFIYFRLESLRFLVFK 89

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448176|ref|XP_004141842.1| PREDICTED: rho guanine nucleotide exchange factor 8-like [Cucumis sativus]

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/89 (52%), Positives = 64/89 (71%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          MLEGK +VQ+TDMP ++Q   M+ A +ALDL++V DC+SIA +IK+ FD  Y   W CVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFK 89
          G +FG   TH  GS I+F++E + FL+FK
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2093457	93	AT3G16120 "AT3G16120" [Arabido	0.787	0.956	0.505	1.2e-19
WB|WBGene00001005	89	dlc-1 [Caenorhabditis elegans	0.787	1.0	0.395	1.8e-16
UNIPROTKB|Q22799	89	dlc-1 "Dynein light chain 1, c	0.787	1.0	0.395	1.8e-16
ZFIN|ZDB-GENE-040426-1961	89	dynll1 "dynein, light chain, L	0.787	1.0	0.406	2.3e-16
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.787	1.0	0.395	4.7e-16
UNIPROTKB|Q5F412	89	DYNLL1 "Uncharacterized protei	0.787	1.0	0.395	7.7e-16
UNIPROTKB|P61285	89	DYNLL1 "Dynein light chain 1,	0.787	1.0	0.395	9.8e-16
UNIPROTKB|E2RK00	89	DYNLL1 "Uncharacterized protei	0.787	1.0	0.395	9.8e-16
UNIPROTKB|P63167	89	DYNLL1 "Dynein light chain 1,	0.787	1.0	0.395	9.8e-16
UNIPROTKB|D9U8D1	89	LC8 "Uncharacterized protein"	0.787	1.0	0.395	9.8e-16

TAIR|locus:2093457 AT3G16120 "AT3G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 45/89 (50%), Positives = 61/89 (68%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             MLEGK  V+ETDMP ++Q   M++A Q+LDL +V D  SIA +IK++FDE Y   W CVV
Sbjct:     1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFK 89
             G +FG   TH  G+ I+F +  + FL+FK
Sbjct:    61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

WB|WBGene00001005 dlc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/91 (39%), Positives = 59/91 (64%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M++ K V++  DM D++Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct:     1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q22799 dlc-1 "Dynein light chain 1, cytoplasmic" [Caenorhabditis elegans (taxid:6239)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/91 (39%), Positives = 59/91 (64%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M++ K V++  DM D++Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct:     1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-1961 dynll1 "dynein, light chain, LC8-type 1" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 37/91 (40%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   +E A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

UNIPROTKB|Q5F412 DYNLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|P61285 DYNLL1 "Dynein light chain 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0072686 "mitotic spindle" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RK00 DYNLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P63167 DYNLL1 "Dynein light chain 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030235 "nitric-oxide synthase regulator activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042326 "negative regulation of phosphorylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0008180 "signalosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007292 "female gamete generation" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|D9U8D1 LC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
             M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
             G++FGS +TH     I+F +  +  L+FK G
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	2e-32
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	1e-24
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	1e-17

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  108 bits (272), Expect = 2e-32
 Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 2/88 (2%)

Query: 4  GKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKD 63
          GK VV+  DMP+E+Q   +E A +AL+   V   + IA +IK++FD+ Y P WHC+VGK+
Sbjct: 1  GKAVVKNADMPEEMQEDAIECAAEALEKFNVE--KDIAAHIKKEFDKKYGPTWHCIVGKN 58

Query: 64 FGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          FGS +TH     I+F +  + FL+FK G
Sbjct: 59 FGSYVTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 89.1 bits (221), Expect = 1e-24
 Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 2/91 (2%)

Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K VV+  DM +++Q   ++ A QAL+   +   + IA YIK++FD+ Y P WHC+V
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 59

Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 60 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 90

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 72.0 bits (176), Expect = 1e-17
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 8   VQETDMPDELQSHVMELAYQALD-LHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGS 66
           V+ +DMP  LQ+     A   LD +    D + +A  +K++FD AY PAWHC+VG  FGS
Sbjct: 38  VRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGS 97

Query: 67  CITHLCGSLIFFRMEMMEFLVFK 89
            +TH  G  ++F ++ +  L+FK
Sbjct: 98  YVTHSTGGFLYFSIDKVYILLFK 120

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.1
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	89.15

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=3.2e-42  Score=228.68  Aligned_cols=90  Identities=48%  Similarity=0.884  Sum_probs=87.3

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684            1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM   80 (113)
Q Consensus         1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i   80 (113)
                      |++++++|+.+|||++||++|+++|.+|+++|+. ++++||..||++||++||++||||||+||||+|||++++||||++
T Consensus         1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~   79 (90)
T KOG3430|consen    1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL   79 (90)
T ss_pred             CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence            7889999999999999999999999999999996 479999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeeC
Q 033684           81 EMMEFLVFKDG   91 (113)
Q Consensus        81 ~~~~~LlfKt~   91 (113)
                      |.++|||||+.
T Consensus        80 g~l~illfK~~   90 (90)
T KOG3430|consen   80 GVLAILLFKCA   90 (90)
T ss_pred             ceEEEEEEecC
Confidence            99999999984

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=7e-41  Score=224.01  Aligned_cols=89  Identities=40%  Similarity=0.833  Sum_probs=86.4

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684            1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM   80 (113)
Q Consensus         1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i   80 (113)
                      |++++++|+.+|||++||++|++++.+|+++|+.  +++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus         2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~--~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~   79 (90)
T PTZ00059          2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNI--EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL   79 (90)
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence            7888999999999999999999999999999986  59999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeeC
Q 033684           81 EMMEFLVFKDG   91 (113)
Q Consensus        81 ~~~~~LlfKt~   91 (113)
                      |+++|||||++
T Consensus        80 ~~~~vLlfK~~   90 (90)
T PTZ00059         80 GQVAILLFKSG   90 (90)
T ss_pred             CCEEEEEEecC
Confidence            99999999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=229.01  Aligned_cols=92  Identities=37%  Similarity=0.657  Sum_probs=86.9

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecC
Q 033684            3 EGKPVVQETDMPDELQSHVMELAYQALDLHEV-SDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRME   81 (113)
Q Consensus         3 ~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~-~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~   81 (113)
                      +.+++|+.+|||++||++|+++|.+|+++++. .++++||++||++||++|||+||||||++|||+|||++++||||++|
T Consensus        33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig  112 (128)
T PLN03058         33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID  112 (128)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            46799999999999999999999999999863 34799999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeeCCCC
Q 033684           82 MMEFLVFKDGKDC   94 (113)
Q Consensus        82 ~~~~LlfKt~~~~   94 (113)
                      +++||||||+.+|
T Consensus       113 ~~aiLLfKt~~~~  125 (128)
T PLN03058        113 KVYILLFKTAVEP  125 (128)
T ss_pred             CEEEEEEeccCcc
Confidence            9999999999883

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=2.9e-39  Score=214.95  Aligned_cols=89  Identities=44%  Similarity=0.848  Sum_probs=84.3

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684            1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM   80 (113)
Q Consensus         1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i   80 (113)
                      |++++++|+.+|||++||++|+++|.+|+++++.  ++++|++||++||++|||+||||||++|||++||++++++||++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~--~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~   78 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQD--EKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI   78 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence            8999999999999999999999999999999985  69999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeeC
Q 033684           81 EMMEFLVFKDG   91 (113)
Q Consensus        81 ~~~~~LlfKt~   91 (113)
                      ++++||||||+
T Consensus        79 ~~~~~li~kt~   89 (89)
T PF01221_consen   79 GNIAFLIFKTQ   89 (89)
T ss_dssp             TTEEEEEEEE-
T ss_pred             CCEEEEEEecC
Confidence            99999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.10  E-value=0.0071  Score=38.71  Aligned_cols=54  Identities=11%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             ChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCeEEEEEe
Q 033684           36 DCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMMEFLVFK   89 (113)
Q Consensus        36 ~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~~~LlfK   89 (113)
                      +...+++.|.+.+.++||+.+-||++++-=++.+|-...|--...+++..++|+
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTDDLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecccceeeeeeCCEEEEEEC
Confidence            368899999999999999999999999433444555577888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=89.15  E-value=3.8  Score=33.15  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHhccccCCC-ceEEEEeC------C--CceeEEecCCcEEE-EecCCeEEEEEeeCCC
Q 033684           37 CQSIAHYIKQKFDEAYRP-AWHCVVGK------D--FGSCITHLCGSLIF-FRMEMMEFLVFKDGKD   93 (113)
Q Consensus        37 ~kdiA~~IK~~lD~kyg~-~WHcIVG~------~--Fgs~vThe~~~~i~-F~i~~~~~LlfKt~~~   93 (113)
                      ..+.|..||+.||+-.-. .+-+||-.      +  |.....+....+|. |.-|+..++||||-..
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~~~  254 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSKKA  254 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeCCC
Confidence            478999999999996543 57888822      1  11222345555665 7789999999999444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		5e-17
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		8e-17
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		8e-17
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		2e-16
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		2e-16
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		3e-16
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		3e-16
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		4e-16
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		5e-16
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		5e-16
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		4e-15
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		1e-14
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-13

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK+G
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKEG 89

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   ++ A QAL+ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DMP++LQ   ++ A QAL+ + +   + IA +IK++FD  + P WHCVV
Sbjct: 1  MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKSG 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   ++ A QAL+ + +     IA YIK++FD+ Y P WHC+V
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--PDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +++Q   ++ A QA++ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +++Q   ++ A QA++ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 4  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 92

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +++Q   ++ A QA++ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 6  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G++FGS +TH     I+F +  +  L+FK G
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 94

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 5  KPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDF 64
          K V++  DM +E+Q   +E A QAL+ + +   + IA +IK++FD+ Y P WHC+VG++F
Sbjct: 1  KAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GSCITHLCGSLIFFRMEMMEFLVFKDG 91
          GS +TH     I+F +  +  L+FK G
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKSG 85

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 7   VVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGS 66
           VV+  DM +E+Q   ++ A QAL  + V   + IA +IK++FD  Y P WHCVVG++FGS
Sbjct: 20  VVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGS 77
Query: 67  CITHLCGSLIFFRMEMMEFLVFKDG 91
            +TH   + I+F +  +  L+FK G
Sbjct: 78  YVTHETKNFIYFYIGQVAILLFKSG 102

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 1  MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
          M + K V++  DM +++Q   ++ A QA++ + +   + IA YIK++FD+ Y P WHC+V
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GK--DFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          G+  +FGS +TH     I+F +  +  L+FK G
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 6  PVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFG 65
          P+V+ +D+ D+L+  ++ ++  ALD +++   + IA  +K++ D  Y   WH +VGK+FG
Sbjct: 14 PIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFG 71
Query: 66 SCITHLCGSLIFFRMEMMEFLVFK 89
          S +TH  G  ++F +  + FLVFK
Sbjct: 72 SYVTHEKGHFVYFYIGPLAFLVFK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	2e-33
1yo3_A	102	Dynein light chain 1; structural genomics consorti	1e-32

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  110 bits (277), Expect = 2e-33
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 3  EGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGK 62
          +  P+V+ +D+ D+L+  ++ ++  ALD +++      A  +K++ D  Y   WH +VGK
Sbjct: 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDI--AGTVKKQLDVKYGNTWHVIVGK 68

Query: 63 DFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          +FGS +TH  G  ++F +  + FLVFK  
Sbjct: 69 NFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  109 bits (273), Expect = 1e-32
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 1   MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVV 60
           ++    VV+  DM +E+Q   ++ A QAL  +  +  + IA +IK++FD  Y P WHCVV
Sbjct: 14  LVPRGSVVKNVDMTEEMQIDAIDCANQALQKY--NVEKDIAAHIKKEFDRKYDPTWHCVV 71

Query: 61  GKDFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
           G++FGS +TH   + I+F +  +  L+FK G
Sbjct: 72  GRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=1.3e-43  Score=235.88  Aligned_cols=89  Identities=40%  Similarity=0.804  Sum_probs=85.3

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEec
Q 033684            1 MLEGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRM   80 (113)
Q Consensus         1 M~~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i   80 (113)
                      |++++++|+.+|||++||++|+++|.+|+++|+.  +++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~--ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~   78 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNI--EKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI   78 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence            8899999999999999999999999999999987  69999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeeC
Q 033684           81 EMMEFLVFKDG   91 (113)
Q Consensus        81 ~~~~~LlfKt~   91 (113)
                      |+++||||||+
T Consensus        79 g~~~iLlfKtg   89 (89)
T 3rjs_A           79 GQVAVLLFKSG   89 (89)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEecC
Confidence            99999999996

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-41  Score=229.26  Aligned_cols=86  Identities=35%  Similarity=0.725  Sum_probs=83.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCCe
Q 033684            4 GKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEMM   83 (113)
Q Consensus         4 ~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~~   83 (113)
                      ++++|+.+|||++||++|+++|.+|+++|+.  +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~--ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~   89 (97)
T 4ds1_A           12 STPIVKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL   89 (97)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence            6899999999999999999999999999986  79999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 033684           84 EFLVFKDG   91 (113)
Q Consensus        84 ~~LlfKt~   91 (113)
                      +||||||+
T Consensus        90 aiLlfKtg   97 (97)
T 4ds1_A           90 AFLVFKTA   97 (97)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999996

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=9.5e-41  Score=227.16  Aligned_cols=87  Identities=41%  Similarity=0.755  Sum_probs=82.9

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCC
Q 033684            3 EGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEM   82 (113)
Q Consensus         3 ~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~   82 (113)
                      .++++|+.+|||++||++|+++|.+|+++|+.  +++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~--ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~   93 (102)
T 1yo3_A           16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ   93 (102)
T ss_dssp             --CCCEEETTSCHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence            36799999999999999999999999999976  7999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeC
Q 033684           83 MEFLVFKDG   91 (113)
Q Consensus        83 ~~~LlfKt~   91 (113)
                      ++||||||+
T Consensus        94 ~aiLlfKt~  102 (102)
T 1yo3_A           94 VAILLFKSG  102 (102)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	2e-32

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  107 bits (268), Expect = 2e-32
 Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 3  EGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGK 62
          + K V++  DM +E+Q   ++ A QAL+ + +     IA YIK++FD+ Y P WHC+VG+
Sbjct: 1  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKD--IAAYIKKEFDKKYNPTWHCIVGR 58

Query: 63 DFGSCITHLCGSLIFFRMEMMEFLVFKDG 91
          +FGS +TH     I+F +  +  L+FK G
Sbjct: 59 NFGSYVTHETRHFIYFYLGQVAILLFKSG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.5e-42  Score=225.23  Aligned_cols=87  Identities=40%  Similarity=0.833  Sum_probs=84.3

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhccccCCCceEEEEeCCCceeEEecCCcEEEEecCC
Q 033684            3 EGKPVVQETDMPDELQSHVMELAYQALDLHEVSDCQSIAHYIKQKFDEAYRPAWHCVVGKDFGSCITHLCGSLIFFRMEM   82 (113)
Q Consensus         3 ~~~~~I~~sDM~~emq~~ai~~a~~al~~~~~~~~kdiA~~IK~~lD~kyg~~WHcIVG~~Fgs~vThe~~~~i~F~i~~   82 (113)
                      +++++|+.+|||++||++|+++|.+|+++|+.  ++++|++||++||++|||+||||||+||||+|||++++||||++|+
T Consensus         1 e~k~vik~~DM~~em~~~a~~~~~~al~~~~~--~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~   78 (87)
T d3e2ba1           1 DRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   78 (87)
T ss_dssp             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETT
T ss_pred             CCcceEEECCCCHHHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECC
Confidence            46899999999999999999999999999987  6899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeC
Q 033684           83 MEFLVFKDG   91 (113)
Q Consensus        83 ~~~LlfKt~   91 (113)
                      ++|||||||
T Consensus        79 ~~~Ll~Ktg   87 (87)
T d3e2ba1          79 VAILLFKSG   87 (87)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999997