Citrus Sinensis ID: 033705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MFSSSILLQILACAIYNNWWPMLSALMYVLvpmpclffgggstqfltsrdgggwidAAKFLtgasavgslAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW
Flexible Loop (DISEMBL)
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW
Low Complexity Region (SEG)
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW
Disordered region (IsUnstruct)
*****ILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRA******
Disordered Region (DISOPRED)
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGS**********GWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLE***
Disordered Region (DISEMBL)
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW
Disordered Region (DISPRO)
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGS********GGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q9AST6	140	Vacuolar protein sorting-	no	no	0.955	0.771	0.540	2e-28
P47111	140	Vacuolar protein sorting-	yes	no	0.663	0.535	0.325	8e-08
Q9UUH1	128	Vacuolar protein sorting-	yes	no	0.699	0.617	0.341	1e-06
Q18319	132	Vacuolar protein sorting-	yes	no	0.876	0.75	0.311	2e-05
Q5RDE9	131	Leptin receptor overlappi	yes	no	0.902	0.778	0.276	0.0001
O95214	131	Leptin receptor overlappi	yes	no	0.902	0.778	0.276	0.0001
Q9CQ74	131	Leptin receptor overlappi	yes	no	0.902	0.778	0.267	0.0002
Q54VP1	125	Vacuolar protein sorting-	yes	no	0.955	0.864	0.269	0.0002
Q32PD8	131	Leptin receptor overlappi	yes	no	0.902	0.778	0.267	0.0007

>sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 82/111 (73%), Gaps = 3/111 (2%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           + S+ I+LQILACA++NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI+AAKF
Sbjct: 23  LVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKF 82

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVM---CFHRAS 108
           LTGASAVGS+AIP IL+HA +I  GA+ ++ +S+ +F+  ++   C   AS
Sbjct: 83  LTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGDAS 133

Involved in endosomal protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|P47111|VPS55_YEAST Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS55 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 7   LLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGG----STQFLTSRDGGGWIDAAKFLT 62
           LL IL+CA+++N++P+   L+++L P+P   F  G    ++ F++     G  D A FLT
Sbjct: 24  LLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMSDSSNTGQ-DLAHFLT 82

Query: 63  GASAVGSLAIPIILRHAHMI 82
           G      +A+P++  H  +I
Sbjct: 83  GMLVTSGIALPVVFYHCQLI 102

Involved in protein transport from endosomes to the vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UUH1|VPS55_SCHPO Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps55 PE=3 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 7  LLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGST--QFLTSRDGGGWIDAAKFLTGA 64
          +L IL+CA++ NW+P+L  + ++L P+P L     ST   FL   D    +D  +F  GA
Sbjct: 19 MLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEED-RNLLDFGRFTFGA 77

Query: 65 SAVGSLAIPIILRHAHMIETGA 86
          +     A+PI+  +  +I T A
Sbjct: 78 TICTGFALPIVFVNVGLIGTAA 99

Involved in protein transport from endosomes to the vacuole.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q18319|VPS55_CAEEL Vacuolar protein sorting-associated protein 55 homolog OS=Caenorhabditis elegans GN=C30B5.2 PE=3 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 10  ILACAI--YNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDG-GGWIDAAKFLTGASA 66
           +L CA+  Y  W PM     YVL P+P L     + +F     G    I+ A F+T    
Sbjct: 22  VLGCALPRYGTWTPMFVITFYVLSPVPLLI----ARRFQEDMTGTNACIELALFITTGIV 77

Query: 67  VGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
           + + A+PI+L HA  I   A F+  T   I   T++ +     +DD
Sbjct: 78  ISAFALPIVLAHAGTIANSACFLVNTGSVIMFGTIIAYFYLHRDDD 123

Involved in endosomal protein transport.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5RDE9|LERL1_PONAB Leptin receptor overlapping transcript-like 1 OS=Pongo abelii GN=LEPROTL1 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 6   ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
           ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct: 18  LMFLMLGCALPIYNKYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
           LT    V +  +PI+   AH+IE GA  +  T   +   T++ F      +D
Sbjct: 73  LTTGIVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATILGFFLVFGSND 124

Negatively regulates growth hormone (GH) receptor cell surface expression in liver. May play a role in liver resistance to GH during periods of reduced nutrient availability.

Pongo abelii (taxid: 9601)

>sp|O95214|LERL1_HUMAN Leptin receptor overlapping transcript-like 1 OS=Homo sapiens GN=LEPROTL1 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 6   ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
           ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct: 18  LMFLMLGCALPIYNKYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
           LT    V +  +PI+   AH+IE GA  +  T   +   T++ F      +D
Sbjct: 73  LTTGIVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATILGFFLVFGSND 124

Negatively regulates growth hormone (GH) receptor cell surface expression in liver. May play a role in liver resistance to GH during periods of reduced nutrient availability.

Homo sapiens (taxid: 9606)

>sp|Q9CQ74|LERL1_MOUSE Leptin receptor overlapping transcript-like 1 OS=Mus musculus GN=Leprotl1 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 6   ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
           ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct: 18  LMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
           LT    V +  +P++   AH+IE GA  +  T   +   T++ F      +D
Sbjct: 73  LTTGIVVSAFGLPVVFARAHLIEWGACALVLTGNTVIFATILGFFLVFGSND 124

Negatively regulates growth hormone (GH) receptor cell surface expression in liver. May play a role in liver resistance to GH during periods of reduced nutrient availability.

Mus musculus (taxid: 10090)

>sp|Q54VP1|VPS55_DICDI Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoideum GN=vps55 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 2   FSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFL 61
           F+  +L  ILAC + ++ +P++    Y L P P +      +    S + G + D   FL
Sbjct: 12  FAVGLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDS---FSSEKGTFEDIGLFL 68

Query: 62  TGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMC----FHRASLEDD 112
           TG       AIP+IL H+ +I   A+            T++     F+R + ED+
Sbjct: 69  TGLFITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLWFFNRHNDEDN 123

Involved in endosomal protein transport.

Dictyostelium discoideum (taxid: 44689)

>sp|Q32PD8|LERL1_BOVIN Leptin receptor overlapping transcript-like 1 OS=Bos taurus GN=LEPROTL1 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 6   ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
           ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct: 18  LMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
           LT    V +  +PI+   A++IE GA  +  T   +   T++ F      +D
Sbjct: 73  LTTGIVVSAFGLPIVFARANLIEWGACALVLTGNTVIFATILGFFLVFGSND 124

Negatively regulates growth hormone (GH) receptor cell surface expression in liver. May play a role in liver resistance to GH during periods of reduced nutrient availability.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
118483618	126	unknown [Populus trichocarpa]	1.0	0.896	0.955	3e-57
224088493	113	predicted protein [Populus trichocarpa]	1.0	1.0	0.955	7e-57
297833938	126	predicted protein [Arabidopsis lyrata su	1.0	0.896	0.929	6e-56
449451279	189	PREDICTED: vacuolar protein sorting-asso	1.0	0.597	0.920	1e-55
16648828	126	AT3g11530/F24K9_21 [Arabidopsis thaliana	1.0	0.896	0.920	3e-55
12322900	134	unknown protein; 72859-71336 [Arabidopsi	1.0	0.843	0.920	3e-55
18399269	113	vacuolar protein sorting 55 domain-conta	1.0	1.0	0.920	6e-55
351722117	126	uncharacterized protein LOC100306519 [Gl	1.0	0.896	0.902	7e-55
217069856	126	unknown [Medicago truncatula] gi|3885158	1.0	0.896	0.902	8e-55
356503825	211	PREDICTED: vacuolar protein sorting-asso	1.0	0.535	0.893	1e-54

>gi|118483618|gb|ABK93704.1| unknown [Populus trichocarpa]

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/113 (95%), Positives = 112/113 (99%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFS+SILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF
Sbjct: 14  MFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 73

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGASAVGS+AIPIILRHAHMIETGAM+IEFTSF IFVCTVMCFHRASLED+W
Sbjct: 74  LTGASAVGSIAIPIILRHAHMIETGAMWIEFTSFVIFVCTVMCFHRASLEDEW 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088493|ref|XP_002308460.1| predicted protein [Populus trichocarpa] gi|222854436|gb|EEE91983.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (570), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 108/113 (95%), Positives = 112/113 (99%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFS+SILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF
Sbjct: 1   MFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGASAVGS+AIPIILRHAHMIETGAM+IEFTSF IFVCTVMCFHRASLED+W
Sbjct: 61  LTGASAVGSIAIPIILRHAHMIETGAMWIEFTSFVIFVCTVMCFHRASLEDEW 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833938|ref|XP_002884851.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330691|gb|EFH61110.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (562), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/113 (92%), Positives = 109/113 (96%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFSSSILLQILACAIY NWWPMLSALMYV+VPMPC+FFGGGSTQFLTSRDGGGWIDAAKF
Sbjct: 14  MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLTSRDGGGWIDAAKF 73

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGAS VGSLAIPIILRHA MIETGAM IEFTSFFIF+CTVMCFHRASL+DDW
Sbjct: 74  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451279|ref|XP_004143389.1| PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 108/113 (95%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFSSSILLQILACA+YNNWWP+LSALMYVLVPMPCLFFGGGSTQFL SRDGGGWI AAKF
Sbjct: 77  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 136

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGAS VGSLAIPIILRHAHMI+TGAMFIEF SFFIFVCTV+CFHR SLEDDW
Sbjct: 137 LTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16648828|gb|AAL25604.1| AT3g11530/F24K9_21 [Arabidopsis thaliana] gi|20466135|gb|AAM19989.1| AT3g11530/F24K9_21 [Arabidopsis thaliana] gi|21592560|gb|AAM64509.1| unknown [Arabidopsis thaliana]

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 108/113 (95%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFSSSILLQILACAIY NWWPMLSALMYV+VPMPC+FFGGGSTQFL SRDGGGWIDAAKF
Sbjct: 14  MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 73

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGAS VGSLAIPIILRHA MIETGAM IEFTSFFIF+CTVMCFHRASL+DDW
Sbjct: 74  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322900|gb|AAG51438.1|AC008153_11 unknown protein; 72859-71336 [Arabidopsis thaliana]

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 108/113 (95%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFSSSILLQILACAIY NWWPMLSALMYV+VPMPC+FFGGGSTQFL SRDGGGWIDAAKF
Sbjct: 22  MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 81

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGAS VGSLAIPIILRHA MIETGAM IEFTSFFIF+CTVMCFHRASL+DDW
Sbjct: 82  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399269|ref|NP_566391.1| vacuolar protein sorting 55 domain-containing protein [Arabidopsis thaliana] gi|334185259|ref|NP_974285.2| vacuolar protein sorting 55 domain-containing protein [Arabidopsis thaliana] gi|332641537|gb|AEE75058.1| vacuolar protein sorting 55 domain-containing protein [Arabidopsis thaliana] gi|332641538|gb|AEE75059.1| vacuolar protein sorting 55 domain-containing protein [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 104/113 (92%), Positives = 108/113 (95%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFSSSILLQILACAIY NWWPMLSALMYV+VPMPC+FFGGGSTQFL SRDGGGWIDAAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGAS VGSLAIPIILRHA MIETGAM IEFTSFFIF+CTVMCFHRASL+DDW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722117|ref|NP_001236209.1| uncharacterized protein LOC100306519 [Glycine max] gi|255628765|gb|ACU14727.1| unknown [Glycine max]

 Score =  217 bits (553), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 109/113 (96%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFS+SILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFL +RDGGGWIDAAKF
Sbjct: 14  MFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLMTRDGGGWIDAAKF 73

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGASAVGSLAIPIIL+HAHMIETGAM IE  SFFIF+CTV+CFH+ASL+DDW
Sbjct: 74  LTGASAVGSLAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQASLDDDW 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217069856|gb|ACJ83288.1| unknown [Medicago truncatula] gi|388515881|gb|AFK46002.1| unknown [Medicago truncatula]

 Score =  217 bits (552), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 109/113 (96%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFL SRDGGGW+DAAKF
Sbjct: 14  MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKF 73

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGAS++GS+AIPIILRHAHMIETGAM IE  SFFIF+CTVMCFH+ASL+DDW
Sbjct: 74  LTGASSMGSIAIPIILRHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503825|ref|XP_003520703.1| PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Glycine max]

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/113 (89%), Positives = 108/113 (95%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           MFS+SILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFL SRDGGGWIDAAKF
Sbjct: 99  MFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLMSRDGGGWIDAAKF 158

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
           LTGASAVGS+AIPIIL+HAHMIETGAM IE  SFFIF+CTV+CFH+A L+DDW
Sbjct: 159 LTGASAVGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQAGLDDDW 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2080732	113	AT3G11530 "AT3G11530" [Arabido	1.0	1.0	0.920	9.9e-55
TAIR|locus:2033729	140	AT1G32410 "AT1G32410" [Arabido	0.902	0.728	0.558	9.1e-29
SGD|S000003805	140	VPS55 "Late endosomal protein	0.663	0.535	0.325	3.6e-09
WB|WBGene00016244	132	C30B5.2 [Caenorhabditis elegan	0.876	0.75	0.311	1.2e-08
POMBASE|SPAC630.11	128	vps55 "vacuolar sorting protei	0.929	0.820	0.277	1.6e-08
UNIPROTKB|O95214	131	LEPROTL1 "Leptin receptor over	0.831	0.717	0.288	6.8e-08
CGD|CAL0001472	144	orf19.2412 [Candida albicans (	0.902	0.708	0.289	8.7e-08
UNIPROTKB|Q59UF2	144	VPS55 "Potential Golgi-to-vacu	0.902	0.708	0.289	8.7e-08
MGI|MGI:1915442	131	Leprotl1 "leptin receptor over	0.831	0.717	0.278	8.7e-08
UNIPROTKB|Q32PD8	131	LEPROTL1 "Leptin receptor over	0.831	0.717	0.278	3.8e-07

TAIR|locus:2080732 AT3G11530 "AT3G11530" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 104/113 (92%), Positives = 108/113 (95%)

Query:     1 MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
             MFSSSILLQILACAIY NWWPMLSALMYV+VPMPC+FFGGGSTQFL SRDGGGWIDAAKF
Sbjct:     1 MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query:    61 LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDDW 113
             LTGAS VGSLAIPIILRHA MIETGAM IEFTSFFIF+CTVMCFHRASL+DDW
Sbjct:    61 LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2033729 AT1G32410 "AT1G32410" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 57/102 (55%), Positives = 79/102 (77%)

Query:     1 MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
             + S+ I+LQILACA++NNWWPMLS +MYVL+PMP LFFGG  +  L +     WI+AAKF
Sbjct:    23 LVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKF 82

Query:    61 LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVM 102
             LTGASAVGS+AIP IL+HA +I  GA+ ++ +S+ +F+  ++
Sbjct:    83 LTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

SGD|S000003805 VPS55 "Late endosomal protein involved in late endosome to vacuole transport" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query:     7 LLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGS----TQFLTSRDGGGWIDAAKFLT 62
             LL IL+CA+++N++P+   L+++L P+P   F  G+    + F++     G  D A FLT
Sbjct:    24 LLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMSDSSNTGQ-DLAHFLT 82

Query:    63 GASAVGSLAIPIILRHAHMI 82
             G      +A+P++  H  +I
Sbjct:    83 GMLVTSGIALPVVFYHCQLI 102

GO:0005770 "late endosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032511 "late endosome to vacuole transport via multivesicular body sorting pathway" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0034424 "Vps55/Vps68 complex" evidence=IDA;IPI

GO:0005768 "endosome" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

WB|WBGene00016244 C30B5.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/106 (31%), Positives = 49/106 (46%)

Query:    10 ILACAI--YNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDG-GGWIDAAKFLTGASA 66
             +L CA+  Y  W PM     YVL P+P L     + +F     G    I+ A F+T    
Sbjct:    22 VLGCALPRYGTWTPMFVITFYVLSPVPLLI----ARRFQEDMTGTNACIELALFITTGIV 77

Query:    67 VGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
             + + A+PI+L HA  I   A F+  T   I   T++ +     +DD
Sbjct:    78 ISAFALPIVLAHAGTIANSACFLVNTGSVIMFGTIIAYFYLHRDDD 123

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC630.11 vps55 "vacuolar sorting protein Vps55 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/108 (27%), Positives = 54/108 (50%)

Query:     7 LLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQ--FLTSRDGGGWIDAAKFLTGA 64
             +L IL+CA++ NW+P+L  + ++L P+P L     ST   FL   D    +D  +F  GA
Sbjct:    19 MLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEEDRN-LLDFGRFTFGA 77

Query:    65 SAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFHRASLEDD 112
             +     A+PI+  +  +I T A  +      I    +  + +A ++ +
Sbjct:    78 TICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQHE 125

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005770 "late endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=ISO

UNIPROTKB|O95214 LEPROTL1 "Leptin receptor overlapping transcript-like 1" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 30/104 (28%), Positives = 50/104 (48%)

Query:     6 ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
             ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct:    18 LMFLMLGCALPIYNKYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query:    61 LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCF 104
             LT    V +  +PI+   AH+IE GA  +  T   +   T++ F
Sbjct:    73 LTTGIVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATILGF 116

GO:0016021 "integral to membrane" evidence=IEA

CGD|CAL0001472 orf19.2412 [Candida albicans (taxid:5476)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 33/114 (28%), Positives = 54/114 (47%)

Query:     3 SSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGST----QFLTSRDGGGWIDAA 58
             +S  LL +L+CA+YNN+  +   L+++L P+P L      +     FLT  D G   D+ 
Sbjct:    15 ASGFLLILLSCALYNNYHTLWVILIFLLAPLPNLIANSIESARDYNFLTFNDYGNSNDST 74

Query:    59 --------KFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCF 104
                     K++TG   V  +A+P+   H  +IE GA  +      I    ++ F
Sbjct:    75 QSPLQEFGKYITGFLIVSGIALPLTFYHCGLIELGATIMSIIGGLIVYSDIIIF 128

GO:0003674 "molecular_function" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0034424 "Vps55/Vps68 complex" evidence=IEA

GO:0032511 "late endosome to vacuole transport via multivesicular body sorting pathway" evidence=IEA

UNIPROTKB|Q59UF2 VPS55 "Potential Golgi-to-vacuolar targeting protein Vps55p" [Candida albicans SC5314 (taxid:237561)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 33/114 (28%), Positives = 54/114 (47%)

Query:     3 SSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGST----QFLTSRDGGGWIDAA 58
             +S  LL +L+CA+YNN+  +   L+++L P+P L      +     FLT  D G   D+ 
Sbjct:    15 ASGFLLILLSCALYNNYHTLWVILIFLLAPLPNLIANSIESARDYNFLTFNDYGNSNDST 74

Query:    59 --------KFLTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCF 104
                     K++TG   V  +A+P+   H  +IE GA  +      I    ++ F
Sbjct:    75 QSPLQEFGKYITGFLIVSGIALPLTFYHCGLIELGATIMSIIGGLIVYSDIIIF 128

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915442 Leprotl1 "leptin receptor overlapping transcript-like 1" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 29/104 (27%), Positives = 50/104 (48%)

Query:     6 ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
             ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct:    18 LMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query:    61 LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCF 104
             LT    V +  +P++   AH+IE GA  +  T   +   T++ F
Sbjct:    73 LTTGIVVSAFGLPVVFARAHLIEWGACALVLTGNTVIFATILGF 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q32PD8 LEPROTL1 "Leptin receptor overlapping transcript-like 1" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 29/104 (27%), Positives = 50/104 (48%)

Query:     6 ILLQILACA--IYNNWWPMLSALMYVLVPMP-CLFFGGGSTQFLTSRDG--GGWIDAAKF 60
             ++  +L CA  IYN +WP+     Y+L P+P C+     + + +   D       + A F
Sbjct:    18 LMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCI-----ARRLVDDTDAMSNACKELAIF 72

Query:    61 LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCF 104
             LT    V +  +PI+   A++IE GA  +  T   +   T++ F
Sbjct:    73 LTTGIVVSAFGLPIVFARANLIEWGACALVLTGNTVIFATILGF 116

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VI2231 SubName- Full=Putative uncharacterized protein; (113 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam04133	120	pfam04133, Vps55, Vacuolar protein sorting 55	5e-34

>gnl|CDD|217917 pfam04133, Vps55, Vacuolar protein sorting 55

 Score =  113 bits (285), Expect = 5e-34
 Identities = 44/105 (41%), Positives = 57/105 (54%)

Query: 1   MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKF 60
           + +   LL ILACA+YNNWWP+   L YVL P+P L     S+    S + G  ID  KF
Sbjct: 7   LLAVGFLLLILACALYNNWWPLFVVLFYVLAPLPNLIARRCSSDSDFSSESGNLIDFGKF 66

Query: 61  LTGASAVGSLAIPIILRHAHMIETGAMFIEFTSFFIFVCTVMCFH 105
           LTGA  V   A+PI+L HA +I  GA  +      I   T++ F 
Sbjct: 67  LTGALVVSGFALPIVLAHAGLIGWGACILSLIGGLIIYGTIIGFS 111

Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PF04133	120	Vps55: Vacuolar protein sorting 55 ; InterPro: IPR	100.0
KOG2174	131	consensus Leptin receptor gene-related protein [Si	100.0

>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase

Probab=100.00  E-value=1.7e-51  Score=295.76  Aligned_cols=112  Identities=38%  Similarity=0.630  Sum_probs=107.7

Q ss_pred             CcHHHHHHHHHHHhhccchHHHHHHHHHHhhhhhhhhhcCCCCCCCcccCCchhhhHHHHHHHHHHHHHhHHHHHHHhhh
Q 033705            1 MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAH   80 (113)
Q Consensus         1 ~laiG~lLvILsCAL~~nw~Pl~v~~~y~laPiP~~i~~~~~~~~d~~~~~~~~~d~~~FlTg~~vvSg~aLPiVL~H~~   80 (113)
                      ++|+|++|+|||||||||||||+++++|+++|+|++++||+++++|+++|+++++|+++|+||++||||+|||+||||++
T Consensus         7 ~~aiG~lL~IL~CAL~~nw~PL~v~~~y~laPiP~~i~~~~~~~~~~~~~~~~~~d~~~FlT~~~vvSg~aLP~VL~H~~   86 (120)
T PF04133_consen    7 FLAIGFLLVILSCALYKNWWPLFVVLFYVLAPIPNLIARRYSSDDDFSSDSGSCQDFGKFLTGFLVVSGFALPIVLAHAG   86 (120)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhHHHHCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            37899999999999999999999999999999999999999999999888777999999999999999999999999999


Q ss_pred             cchhhHHHHHhhhhhhhhhhhhhhhhcccCCC
Q 033705           81 MIETGAMFIEFTSFFIFVCTVMCFHRASLEDD  112 (113)
Q Consensus        81 iI~~~A~~lsl~g~~ii~~Ti~~f~~~f~~~d  112 (113)
                      +|+|+||+|+++||+++|+||++|+++|+|||
T Consensus        87 ~I~~~A~~l~l~g~~ii~~ti~~f~~~f~~~d  118 (120)
T PF04133_consen   87 IIQWGACGLSLAGGVIIYATIIGFFWFFGEED  118 (120)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHhhccCcC
Confidence            99999999999999999999999999998555

Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].

>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-45  Score=265.39  Aligned_cols=111  Identities=40%  Similarity=0.645  Sum_probs=101.2

Q ss_pred             CcHHHHHHHHHHHhhccchHHHHHHHHHHhhhhhhhhhcCCCCCCCcccCCchhhhHHHHHHHHHHHHHhHHHHHHHhhh
Q 033705            1 MFSSSILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIDAAKFLTGASAVGSLAIPIILRHAH   80 (113)
Q Consensus         1 ~laiG~lLvILsCAL~~nw~Pl~v~~~y~laPiP~~i~~~~~~~~d~~~~~~~~~d~~~FlTg~~vvSg~aLPiVL~H~~   80 (113)
                      ++|+|++|+||||||++|||||+++++|+++|+||++++..+..+|+.+++++|+|+++|+||++||||+|||+||+|++
T Consensus        13 ~~a~G~~l~iL~CAL~~nwwPlf~~~~yvl~PiP~l~f~a~~~~~d~~~~~~~~idlA~FlTg~~vvs~falPiVl~ha~   92 (131)
T KOG2174|consen   13 AGAVGLLLLILGCALFRNWWPLFVILFYVLSPIPNLLFIAGRTQHDFDATSDACIDLAKFLTGAIVVSAFALPIVLAHAG   92 (131)
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHhcCCchHHhccccceecccccccHHHHHHHHHhcchhhhhhhhHHHHHHhh
Confidence            36899999999999999999999999999999998888555544555555669999999999999999999999999999


Q ss_pred             cchhhHHHHHhhhhhhhhhhhhhhhhcccCC
Q 033705           81 MIETGAMFIEFTSFFIFVCTVMCFHRASLED  111 (113)
Q Consensus        81 iI~~~A~~lsl~g~~ii~~Ti~~f~~~f~~~  111 (113)
                      +|+|+||.|++.||.++|++|+.|++.|++|
T Consensus        93 lI~~gAc~l~~tg~~iIF~~ii~~f~~f~~~  123 (131)
T KOG2174|consen   93 LIGWGACALVLTGNSIIFLVIILFFLIFGGD  123 (131)
T ss_pred             HhhhhhhhhhhcCCchhHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999733

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00