Citrus Sinensis ID: 033708


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
MNEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM
cccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHccccccc
cccccHHHHHHHHHHHHHHHHcccccccccHHHEcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHcccEEEc
MNEPWNLQALIFLLAIIVRAAnrpveydsddeliaprqqirqplinrptppatgvpvagsldqrpsrndawSTRMrekygldtseftynpseshrfqqvatqpaeersrctim
MNEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIrqplinrptppatgvpvagsldqrpsrndawstrMREKYGLDTSEFtynpseshrfqqvatqpaeersrctim
MNEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM
****WNLQALIFLLAIIVRAANRPVEY**************************************************************************************
***PWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLI****************************RMREKYGLDTSEF**********************RCTIM
MNEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDTSEFTYNP***********************
*NEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIR****************************************DTSEFTYNPSES********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNEPWNLQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query113
255573421 280 conserved hypothetical protein [Ricinus 0.946 0.382 0.887 7e-51
118481618 280 unknown [Populus trichocarpa] 1.0 0.403 0.782 3e-49
449461537 279 PREDICTED: uncharacterized protein LOC10 0.840 0.340 0.926 5e-46
388504306 282 unknown [Lotus japonicus] 0.946 0.379 0.794 1e-45
224138040 280 predicted protein [Populus trichocarpa] 1.0 0.403 0.717 4e-45
4097569111 GMFP4, partial [Glycine max] 0.946 0.963 0.775 6e-44
356511490 277 PREDICTED: uncharacterized protein LOC54 0.946 0.386 0.766 1e-43
358248102 277 uncharacterized protein LOC100793680 [Gl 0.946 0.386 0.766 2e-43
356497054 283 PREDICTED: uncharacterized protein LOC10 0.858 0.342 0.816 2e-41
255647653 283 unknown [Glycine max] 0.858 0.342 0.816 2e-41
>gi|255573421|ref|XP_002527636.1| conserved hypothetical protein [Ricinus communis] gi|223532941|gb|EEF34707.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  204 bits (518), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 103/107 (96%)

Query: 7   LQALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPS 66
           L+AL+F+LA+IVRAANRP EYDSDDELIAPRQQIRQPL+NRP  PATGVPVAG+LDQRPS
Sbjct: 174 LEALLFVLALIVRAANRPAEYDSDDELIAPRQQIRQPLLNRPPGPATGVPVAGTLDQRPS 233

Query: 67  RNDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM 113
           RNDAWSTRMREKYGLDTSEF+YNPSESHRFQQV+TQP EERSRCTIM
Sbjct: 234 RNDAWSTRMREKYGLDTSEFSYNPSESHRFQQVSTQPTEERSRCTIM 280




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481618|gb|ABK92751.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461537|ref|XP_004148498.1| PREDICTED: uncharacterized protein LOC101203030 [Cucumis sativus] gi|449527337|ref|XP_004170668.1| PREDICTED: uncharacterized protein LOC101226567 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388504306|gb|AFK40219.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224138040|ref|XP_002326503.1| predicted protein [Populus trichocarpa] gi|222833825|gb|EEE72302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4097569|gb|AAD09513.1| GMFP4, partial [Glycine max] Back     alignment and taxonomy information
>gi|356511490|ref|XP_003524459.1| PREDICTED: uncharacterized protein LOC547883 [Glycine max] Back     alignment and taxonomy information
>gi|358248102|ref|NP_001240069.1| uncharacterized protein LOC100793680 [Glycine max] gi|255641974|gb|ACU21254.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356497054|ref|XP_003517379.1| PREDICTED: uncharacterized protein LOC100791911 [Glycine max] Back     alignment and taxonomy information
>gi|255647653|gb|ACU24289.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query113
TAIR|locus:2033718280 TOM2A "tobamovirus multiplicat 0.938 0.378 0.773 1.7e-41
TAIR|locus:2038997270 AT2G20230 [Arabidopsis thalian 0.654 0.274 0.372 0.00016
TAIR|locus:2033718 TOM2A "tobamovirus multiplication 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 82/106 (77%), Positives = 91/106 (85%)

Query:     8 QALIFLLAIIVRAANRPVEYDSDDELIAPRQQIRQPLINRPTPPATGVPVAGSLDQRPSR 67
             +AL+FLLA++VRAAN P EYDSDDE +APRQQIRQP INR   P TGVPVA +LDQRPSR
Sbjct:   175 EALLFLLALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSR 234

Query:    68 NDAWSTRMREKYGLDTSEFTYNPSESHRFQQVATQPAEERSRCTIM 113
             +D WS RMREKYGLDTSEFTYNPSESHRFQQ+  QP EE+ RCTIM
Sbjct:   235 SDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280




GO:0005576 "extracellular region" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0016020 "membrane" evidence=ISS
GO:0046786 "viral replication complex formation and maintenance" evidence=IMP
GO:0005773 "vacuole" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2038997 AT2G20230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.01180051
Putative uncharacterized protein (267 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00