Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 113
TIGR01160 110
TIGR01160, SUI1_MOF2, translation initiation facto
2e-59 cd11566 84
cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
7e-49 pfam01253 74
pfam01253, SUI1, Translation initiation factor SUI
4e-21 COG0023 104
COG0023, SUI1, Translation initiation factor 1 (eI
3e-19 cd00474 78
cd00474, eIF1_SUI1_like, Eukaryotic initiation fac
6e-15 cd11608 85
cd11608, eIF2D_C, C-terminal domain of eIF2D and r
5e-11 cd11607 86
cd11607, DENR_C, C-terminal domain of DENR and rel
9e-09 PRK00939 99
PRK00939, PRK00939, translation initiation factor
6e-08 TIGR01158 101
TIGR01158, SUI1_rel, translation initation factor
3e-07 cd11567 76
cd11567, YciH_like, Homologs of eIF1/SUI1 includin
6e-06 PRK07451 115
PRK07451, PRK07451, translation initiation factor
0.004
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic
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Score = 177 bits (450), Expect = 2e-59
Identities = 70/110 (63%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Query: 5 DIQVPAAFDPFADAKAEDSGAGS-KEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDL 63
IQ +FDPFADA +DS Y+HIR+QQRNGRK+LTTVQGL KE+ KI+K L
Sbjct: 1 SIQNLKSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKAL 60
Query: 64 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113
KKEF CNGTV++DPE+G+VIQLQGDQRKNV FL+ G++KK+ IK+HGF
Sbjct: 61 KKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
Back Show alignment and domain information
Score = 149 bits (380), Expect = 7e-49
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 29 EYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
Y+HIR+QQRNGRK+LTTVQGL +EF KILK KKEF CNGTVV+DPE G+VIQLQGD
Sbjct: 1 GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGD 60
Query: 89 QRKNVSTFLVQAGIVKKEHIKMHG 112
QRKN+ FL++ GI KK++IK+HG
Sbjct: 61 QRKNIKEFLLEEGIAKKDNIKVHG 84
eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1
Back Show alignment and domain information
Score = 79.5 bits (197), Expect = 4e-21
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 AGSKEYVHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVI 83
+ + IR ++R G K++T V GL K+ K+LKK+F C GTV G+ I
Sbjct: 1 KKEDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTVKD----GEEI 56
Query: 84 QLQGDQRKNVSTFLVQAG 101
++QGD R V L + G
Sbjct: 57 EIQGDHRDKVKDLLEKEG 74
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 75.4 bits (186), Expect = 3e-19
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 5 DIQVPAAFDPFADAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDL 63
P E + + V IR + R K++T ++GL K+ K+ K+L
Sbjct: 4 STICGRIGLPKELTCEEVA-KEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKEL 62
Query: 64 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMH 111
KK+ C GTV I++QGD R V L++ G K ++I +
Sbjct: 63 KKKCACGGTVKDG-----EIEIQGDHRDKVKELLIKKGF-KVKNIGIE 104
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins
Back Show alignment and domain information
Score = 64.0 bits (156), Expect = 6e-15
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 31 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 90
+HI+V+QR+G K +T V+GL K+ +LKK+ C G+V I++QGD
Sbjct: 2 IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVE---GEKMEIEIQGDHT 58
Query: 91 KNVSTFLVQAGIVKK 105
+ L + GI K
Sbjct: 59 DQIIVALEEKGIDKD 73
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins
Back Show alignment and domain information
Score = 54.1 bits (131), Expect = 5e-11
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 31 VHIRVQQRNGRKSLTTVQGLK------KEFSYNKILKDLKKEFCCNGTVVQDPEL--GQV 82
+ I ++R G K +T + GL+ +EF+ K+L+K+ + +V P G
Sbjct: 2 IDITTERRQGNKKVTLISGLESFGIDPEEFA-----KELQKKCAASTSVSPLPGKKKGVE 56
Query: 83 IQLQGDQRKNVSTFLVQAGIVKKEHIK 109
+Q+QG+Q K V+ L + V K++I
Sbjct: 57 VQVQGNQVKFVAKLLTEKYGVPKKYID 83
eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins
Back Show alignment and domain information
Score = 48.3 bits (116), Expect = 9e-09
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 31 VHIRVQQRNGRKSLTTVQGLKK-EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 89
V I+ RN RK +TTV GL+ K K K+F C +V + E I +QGD
Sbjct: 3 VTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQGDV 62
Query: 90 RKNVSTFLV-QAGIVKKEHIK 109
++ ++ + + +++I+
Sbjct: 63 TDDIVDLILEKWPEIDEDNIE 83
DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed
Back Show alignment and domain information
Score = 46.5 bits (111), Expect = 6e-08
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 31 VHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 89
+ I+V +R K +T ++G+ K+ ++ K LK + C GTV I+LQGD
Sbjct: 26 IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDG-----RIELQGDH 80
Query: 90 RKNVSTFLVQAG 101
R+ V L++ G
Sbjct: 81 RERVKELLIKMG 92
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Score = 44.7 bits (106), Expect = 3e-07
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 33 IRVQ-QRNGR--KSLTTVQGL-KKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
+R+Q + GR K +T ++GL + ++ K+LK + C GTV VI++QGD
Sbjct: 26 VRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG-----VIEIQGD 80
Query: 89 QRKNVSTFLVQAG 101
R V L + G
Sbjct: 81 HRDRVKDLLEKKG 93
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH
Back Show alignment and domain information
Score = 40.5 bits (96), Expect = 6e-06
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 31 VHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
V +R+++R G K++T ++GL E ++ K+LKK+ C GTV I+LQGD
Sbjct: 3 VRVRLEKRGRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTVKDG-----EIELQGD 57
Query: 89 QRKNVSTFLVQAGIVKK 105
R+ + L + G K
Sbjct: 58 HREKIKELLEKKGFKVK 74
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation. Length = 76
>gnl|CDD|236021 PRK07451, PRK07451, translation initiation factor Sui1; Validated
Back Show alignment and domain information
Score = 34.0 bits (78), Expect = 0.004
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 33 IRVQ-QRNGR--KSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88
+RVQ R+GR K++T + G + K + K+LK LK C +G V+D I++QGD
Sbjct: 40 LRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKT-QCGSGGTVKDNT----IEIQGD 94
Query: 89 QRKNVSTFLVQAG 101
R+ + L++ G
Sbjct: 95 HRQKILEILIKLG 107
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
113
TIGR01160 110
SUI1_MOF2 translation initiation factor SUI1, euka
100.0 KOG1770 112
consensus Translation initiation factor 1 (eIF-1/S
100.0 COG0023 104
SUI1 Translation initiation factor 1 (eIF-1/SUI1)
99.96 cd00474 77
SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac
99.96 PF01253 83
SUI1: Translation initiation factor SUI1; InterPro
99.95 PRK00939 99
translation initiation factor Sui1; Reviewed
99.93 TIGR01158 101
SUI1_rel translation initation factor SUI1, putati
99.91 TIGR01159 173
DRP1 density-regulated protein DRP1. This protein
99.91 PRK09019 108
translation initiation factor Sui1; Validated
99.9 PRK07451 115
translation initiation factor Sui1; Validated
99.9 PRK06824 118
translation initiation factor Sui1; Validated
99.89 KOG3239 193
consensus Density-regulated protein related to tra
99.73 KOG2522 560
consensus Filamentous baseplate protein Ligatin, c
99.67 PF05046 87
Img2: Mitochondrial large subunit ribosomal protei
98.23 KOG4034 169
consensus Uncharacterized conserved protein NOF (N
96.82 PRK14451 89
acylphosphatase; Provisional
93.92 PRK03988 138
translation initiation factor IF-2 subunit beta; V
93.29 PRK14434 92
acylphosphatase; Provisional
93.28 PRK14443 93
acylphosphatase; Provisional
92.74 PRK14426 92
acylphosphatase; Provisional
92.18 TIGR00311 133
aIF-2beta translation initiation factor aIF-2, bet
92.09 PRK14450 91
acylphosphatase; Provisional
92.06 PRK14444 92
acylphosphatase; Provisional
91.93 PRK14420 91
acylphosphatase; Provisional
91.39 smart00653 110
eIF2B_5 domain present in translation initiation f
90.6 PRK14432 93
acylphosphatase; Provisional
90.47 PRK14422 93
acylphosphatase; Provisional
90.44 PRK14429 90
acylphosphatase; Provisional
90.29 PRK14433 87
acylphosphatase; Provisional
89.34 PRK14439 163
acylphosphatase; Provisional
89.24 PRK14437 109
acylphosphatase; Provisional
88.96 PRK14435 90
acylphosphatase; Provisional
88.81 PRK14431 89
acylphosphatase; Provisional
88.79 PRK14427 94
acylphosphatase; Provisional
88.53 PRK14425 94
acylphosphatase; Provisional
88.53 PRK14448 90
acylphosphatase; Provisional
88.41 PRK14428 97
acylphosphatase; Provisional
88.0 PRK14423 92
acylphosphatase; Provisional
87.82 PRK14442 91
acylphosphatase; Provisional
87.32 PRK12336 201
translation initiation factor IF-2 subunit beta; P
87.12 PRK14440 90
acylphosphatase; Provisional
87.07 PRK14452 107
acylphosphatase; Provisional
86.86 PRK14445 91
acylphosphatase; Provisional
86.83 PRK14436 91
acylphosphatase; Provisional
86.46 PRK14446 88
acylphosphatase; Provisional
85.99 PRK14424 94
acylphosphatase; Provisional
85.79 PRK14421 99
acylphosphatase; Provisional
85.64 PRK14449 90
acylphosphatase; Provisional
85.24 PRK14438 91
acylphosphatase; Provisional
85.15 PF01873 125
eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:
84.35 PRK14447 95
acylphosphatase; Provisional
84.24 PRK14441 93
acylphosphatase; Provisional
83.78 PF00708 91
Acylphosphatase: Acylphosphatase; InterPro: IPR001
83.22 PRK14430 92
acylphosphatase; Provisional
81.94
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic
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Probab=100.00 E-value=4.9e-37 Score=213.96 Aligned_cols=108 Identities=64% Similarity=1.079 Sum_probs=97.3
Q ss_pred ccccCCCCCCccccccccCCCC-CCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeE
Q 033711 4 FDIQVPAAFDPFADAKAEDSGA-GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQV 82 (113)
Q Consensus 4 ~~~~~~~~fdp~~~~~~~~~~~-~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~ 82 (113)
++++. .||||.++..++.-. .....|||++++|+|||.||+|+||+..+||++|||.||++|||||||+++++++++
T Consensus 2 ~~~~~--~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~ 79 (110)
T TIGR01160 2 IQNLK--SFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEV 79 (110)
T ss_pred ccccc--CCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCE
Confidence 45655 589999986554322 467789999999999999999999998889999999999999999999998888889
Q ss_pred EEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 83 IQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 83 I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
|+||||||++|++||.++||.+++||+||||
T Consensus 80 IelQGD~re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 80 IQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred EEEeCcHHHHHHHHHHHcCCCCHHHeeecCC
Confidence 9999999999999999999999999999997
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=100.00 E-value=9e-37 Score=210.04 Aligned_cols=111 Identities=65% Similarity=1.024 Sum_probs=103.8
Q ss_pred CCcccccCCCCCCccccccccCC-CCCCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCC
Q 033711 1 MSDFDIQVPAAFDPFADAKAEDS-GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL 79 (113)
Q Consensus 1 ~~~~~~~~~~~fdp~~~~~~~~~-~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~ 79 (113)
|+.++++. +||||+++.++++ ..+....||||+++|+|||++|+|+||+.++|++.+++.|||.|||+|+|.++|+.
T Consensus 1 e~~iq~~~--~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~ 78 (112)
T KOG1770|consen 1 EHIIQNLE--DFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEY 78 (112)
T ss_pred Cccccchh--hcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCccc
Confidence 56777755 7999999988733 67888899999999999999999999998899999999999999999999999999
Q ss_pred CeEEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 80 GQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 80 g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
|++||||||||.++.+||...|+.++.||.||||
T Consensus 79 gevIQLqGDqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 79 GEVIQLQGDQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred CceEEeccchhhhHHHHHHHhccccccceeecCC
Confidence 9999999999999999999999999999999998
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.96 E-value=4.1e-29 Score=172.47 Aligned_cols=93 Identities=31% Similarity=0.513 Sum_probs=81.3
Q ss_pred CCccccccccCCCCCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh
Q 033711 12 FDPFADAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 90 (113)
Q Consensus 12 fdp~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~ 90 (113)
.+|.+.... +..+...+.|+|++++|++||.||+|+||+ +++|+++||+.||++|||||||++ .+|+||||||
T Consensus 11 ~~p~e~~~~-~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~-----~~IeiQGdhr 84 (104)
T COG0023 11 GLPKELTCE-EVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD-----GEIEIQGDHR 84 (104)
T ss_pred CCchHHhhh-hcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC-----CEEEEeChHH
Confidence 566665412 223445899999999999999999999999 899999999999999999999986 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCeeec
Q 033711 91 KNVSTFLVQAGIVKKEHIKMH 111 (113)
Q Consensus 91 ~~i~~~L~~~G~~~~~~I~ih 111 (113)
++|.++|.++|| ++++|.+|
T Consensus 85 ~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 85 DKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred HHHHHHHHHcCC-chhhcccC
Confidence 999999999999 77888775
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation
Back Show alignment and domain information
Probab=99.96 E-value=6.2e-29 Score=163.56 Aligned_cols=76 Identities=53% Similarity=0.854 Sum_probs=72.3
Q ss_pred eEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCCCCCe
Q 033711 30 YVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHI 108 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I 108 (113)
.|+|++++|++||.||+|+||+ +.+|++++||.||++|||||||++ .+|+||||||++|+++|.++||+. +||
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~~~-~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGFAK-DNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCCCH-HHe
Confidence 3899999999999999999999 888999999999999999999985 599999999999999999999966 999
Q ss_pred eec
Q 033711 109 KMH 111 (113)
Q Consensus 109 ~ih 111 (113)
.||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 999
This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []
Back Show alignment and domain information
Probab=99.95 E-value=2.3e-27 Score=157.08 Aligned_cols=81 Identities=41% Similarity=0.720 Sum_probs=68.7
Q ss_pred CCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 25 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
+++.++|+|++++|+|||.||+|+||+ +++|+++||+.|+++|||||||.+++..+.+|+|||||+++|.++|.++|++
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~ 80 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGI 80 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSS
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCC
Confidence 367889999999999999999999999 9999999999999999999999988755789999999999999999999885
Q ss_pred CC
Q 033711 104 KK 105 (113)
Q Consensus 104 ~~ 105 (113)
++
T Consensus 81 ~k 82 (83)
T PF01253_consen 81 PK 82 (83)
T ss_dssp E-
T ss_pred CC
Confidence 54
SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
>PRK00939 translation initiation factor Sui1; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=4.5e-26 Score=156.29 Aligned_cols=78 Identities=33% Similarity=0.638 Sum_probs=71.9
Q ss_pred CCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 25 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
+...+.|+|++++|+|||.||+|+||+ +++|+++|+|.||++|||||||++ ++|+||||||++|++||.++||
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~- 93 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGF- 93 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCC-
Confidence 345689999999999999999999999 999999999999999999999974 4799999999999999999999
Q ss_pred CCCCe
Q 033711 104 KKEHI 108 (113)
Q Consensus 104 ~~~~I 108 (113)
+.+||
T Consensus 94 ~~~~i 98 (99)
T PRK00939 94 SEENI 98 (99)
T ss_pred Chhhc
Confidence 56666
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Probab=99.91 E-value=2.1e-24 Score=148.38 Aligned_cols=75 Identities=31% Similarity=0.549 Sum_probs=70.0
Q ss_pred CCCcceEEEEEEEe-cCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 25 AGSKEYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 25 ~~~~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
+++.+.|+|++++| +++|.||+|+||+ +.+|++++||.||++||||||+++ ++|+||||||++|.++|.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 45789999999999 8999999999999 899999999999999999999974 5999999999999999999999
Q ss_pred CC
Q 033711 103 VK 104 (113)
Q Consensus 103 ~~ 104 (113)
+.
T Consensus 95 ~~ 96 (101)
T TIGR01158 95 KV 96 (101)
T ss_pred Ce
Confidence 53
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
>TIGR01159 DRP1 density-regulated protein DRP1
Back Show alignment and domain information
Probab=99.91 E-value=1.7e-24 Score=161.13 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=77.4
Q ss_pred CCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--C
Q 033711 25 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--G 101 (113)
Q Consensus 25 ~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~--G 101 (113)
++.+++|+|++++|++||.||+|+||+ +++|+++++|.|+++||||+||.+.+.++++|+|||||++.|.++|.+. .
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999 9999999999999999999999988887889999999999999999884 6
Q ss_pred CCCCCCee
Q 033711 102 IVKKEHIK 109 (113)
Q Consensus 102 ~~~~~~I~ 109 (113)
+ ++++|.
T Consensus 165 v-~e~~I~ 171 (173)
T TIGR01159 165 V-GDKDIK 171 (173)
T ss_pred C-CHHHee
Confidence 5 666775
This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
>PRK09019 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=2.2e-23 Score=144.93 Aligned_cols=75 Identities=28% Similarity=0.469 Sum_probs=67.3
Q ss_pred CCCCcceEEEEEEE-ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 033711 24 GAGSKEYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G 101 (113)
++...+.|+|++++ ++++|.||+|+||+ .+.|+++|||.||++|||||||++ ++|+||||||++|.+||.++|
T Consensus 26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-----~~IelQGD~r~~v~~~L~~~G 100 (108)
T PRK09019 26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKG 100 (108)
T ss_pred CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-----CEEEEcCcHHHHHHHHHHHCC
Confidence 45577889998775 35678999999999 899999999999999999999985 589999999999999999999
Q ss_pred CC
Q 033711 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 101 f~ 102 (108)
T PRK09019 101 MK 102 (108)
T ss_pred Ce
Confidence 93
>PRK07451 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=3.4e-23 Score=145.34 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=67.6
Q ss_pred CCCCcceEEEEEEE-ecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcC
Q 033711 24 GAGSKEYVHIRVQQ-RNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 101 (113)
Q Consensus 24 ~~~~~~~I~I~~e~-R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G 101 (113)
++++.+.|+|++++ ++++|.||+|+||+ .+.|+++|||.||++||||||+++ ++|+||||||++|.+||.++|
T Consensus 33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd-----~~IelQGD~r~~v~~~L~~~G 107 (115)
T PRK07451 33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKILEILIKLG 107 (115)
T ss_pred CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC-----CEEEEcCcHHHHHHHHHHHCC
Confidence 56678888888764 55779999999999 889999999999999999999975 589999999999999999999
Q ss_pred CC
Q 033711 102 IV 103 (113)
Q Consensus 102 ~~ 103 (113)
|.
T Consensus 108 f~ 109 (115)
T PRK07451 108 YK 109 (115)
T ss_pred Ce
Confidence 94
>PRK06824 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.89 E-value=4e-23 Score=145.58 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=67.4
Q ss_pred CCcceEEEEEEEe-cCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCC
Q 033711 26 GSKEYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIV 103 (113)
Q Consensus 26 ~~~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~ 103 (113)
...+.|+|+++++ +++|.||+|+||+ .+.|+++|||.||++|||||||++ ++|+||||||++|.+||.++||.
T Consensus 38 ~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~~ 112 (118)
T PRK06824 38 AGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGFK 112 (118)
T ss_pred CcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCCe
Confidence 3466999988864 7899999999999 899999999999999999999985 59999999999999999999994
Q ss_pred C
Q 033711 104 K 104 (113)
Q Consensus 104 ~ 104 (113)
.
T Consensus 113 ~ 113 (118)
T PRK06824 113 A 113 (118)
T ss_pred E
Confidence 3
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Back Show alignment and domain information
Probab=99.73 E-value=8.3e-18 Score=125.22 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=74.7
Q ss_pred CCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHc--CC
Q 033711 26 GSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQA--GI 102 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~--G~ 102 (113)
.-+++|.|..+-|+.||.||+|+||+ |+|||+.++|.|.++||||+||+.++...++|.||||..+.|.+|+.+. -+
T Consensus 98 ~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev 177 (193)
T KOG3239|consen 98 RLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEV 177 (193)
T ss_pred cCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccC
Confidence 45688999999999999999999999 9999999999999999999999998888889999999999999999884 34
Q ss_pred CCCCCeee
Q 033711 103 VKKEHIKM 110 (113)
Q Consensus 103 ~~~~~I~i 110 (113)
+++++.|
T Consensus 178 -~ed~~~I 184 (193)
T KOG3239|consen 178 -PEDDVKI 184 (193)
T ss_pred -Cccccee
Confidence 4444443
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.67 E-value=1e-16 Score=133.36 Aligned_cols=97 Identities=30% Similarity=0.412 Sum_probs=86.4
Q ss_pred CCCccccccccCC----CCCCcceEEEEEEEecCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCC-CCeEEE
Q 033711 11 AFDPFADAKAEDS----GAGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPE-LGQVIQ 84 (113)
Q Consensus 11 ~fdp~~~~~~~~~----~~~~~~~I~I~~e~R~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~-~g~~I~ 84 (113)
.+.||.++...|. -++..++|.|.+++|.|||.||+|+||+ |++|++.+|..|+++|+|+.||.+.|. .+.+++
T Consensus 445 rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVq 524 (560)
T KOG2522|consen 445 RMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQ 524 (560)
T ss_pred cCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEE
Confidence 4778888866554 4688999999999999999999999999 999999999999999999999988886 568999
Q ss_pred EcCChhHHHHHHHHH-cCCCCCCCe
Q 033711 85 LQGDQRKNVSTFLVQ-AGIVKKEHI 108 (113)
Q Consensus 85 lQGD~~~~i~~~L~~-~G~~~~~~I 108 (113)
|||+|.+.|.++|.+ +|+|++ +|
T Consensus 525 vQGnqih~iadlL~k~ygipkK-~I 548 (560)
T KOG2522|consen 525 VQGNQIHSIADLLNKSYGIPKK-WI 548 (560)
T ss_pred EecchhhHHHHHHHHhhCCCHH-HH
Confidence 999999999999988 899654 44
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=98.23 E-value=1.3e-05 Score=53.52 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=51.6
Q ss_pred cceEEEEEEEec-CCeeEEEEeCCCCcccHHHHHHHHhhhccc------ccEEEeCCCCCeEEEEcCChhHHHHHHHHHc
Q 033711 28 KEYVHIRVQQRN-GRKSLTTVQGLKKEFSYNKILKDLKKEFCC------NGTVVQDPELGQVIQLQGDQRKNVSTFLVQA 100 (113)
Q Consensus 28 ~~~I~I~~e~R~-g~K~VT~V~Gl~~~~dlk~lak~lKkk~~c------ggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~ 100 (113)
...+-|..+.++ |++.+|+|+.++- |+..|.+.|++.|.= ...|.+ ....|+|+||+.+.|++||.+.
T Consensus 11 ~~~LPVY~~~k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~---~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 11 SGNLPVYLDIKNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNE---LTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred CCcccEEEEEeCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEee---cCCEEEEcCccHHHHHHHHHHC
Confidence 345566665544 7899999999973 567777777777542 233432 2458999999999999999999
Q ss_pred CC
Q 033711 101 GI 102 (113)
Q Consensus 101 G~ 102 (113)
||
T Consensus 86 GF 87 (87)
T PF05046_consen 86 GF 87 (87)
T ss_pred cC
Confidence 97
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Back Show alignment and domain information
Probab=96.82 E-value=0.0035 Score=46.58 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=47.0
Q ss_pred eEEEEEEEe-cCCeeEEEEeCCC-C----cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 30 YVHIRVQQR-NGRKSLTTVQGLK-K----EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 30 ~I~I~~e~R-~g~K~VT~V~Gl~-~----~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
.+-+..+.+ +|+|.+|+|+.++ + .-||.+.+...-++--| .-|.+ -.+.|.+-||+.+.|.++|.++||
T Consensus 95 nlPVYl~~k~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vne---lsgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 95 NLPVYLDYKQRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNE---LSGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred CcceEEeeecCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhh---hcceEEEeCChHHHHHHHHHHccC
Confidence 344555544 4999999999999 4 23566555554444333 22222 135899999999999999999997
>PRK14451 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.92 E-value=0.29 Score=32.55 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=39.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~ 98 (113)
|+|.-.++-+...++.+..+++..|.|...+++.=+|++||+- .++..++|.
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 5666667777888888889999999998776666799999985 334444444
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Back Show alignment and domain information
Probab=93.29 E-value=0.24 Score=35.80 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=42.8
Q ss_pred ceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 29 EYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 29 ~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
++..+.++ |+| |++.+|. . .=+.+-++|.|.+.||+.|++ + ++...|+|.+..+..+
T Consensus 31 p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~----~~~lii~G~~~~~~i~ 92 (138)
T PRK03988 31 PKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-E----GGRLILQGKFSPRVIN 92 (138)
T ss_pred CCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-c----CCEEEEEEeeCHHHHH
Confidence 44445444 655 9999987 2 236899999999999999999 4 4689999997665444
>PRK14434 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.28 E-value=0.48 Score=31.72 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=42.6
Q ss_pred EEeCCCCcccHHHHHHHHhhhcc-cccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFC-CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~-cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
.|+|.-.++-....+..+.++++ =.|.|...+++.=+|++||+..+.|.+|+.. .|-|+-..|
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V 72 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKV 72 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEE
Confidence 34555556667777788888888 8899987666556999999865555555544 366544443
>PRK14443 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=92.74 E-value=0.48 Score=31.95 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=38.6
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCC--hhHHHHHHHHHcCCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD--QRKNVSTFLVQAGIV 103 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD--~~~~i~~~L~~~G~~ 103 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+ ..+...+.|.+ |-|
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~-g~p 67 (93)
T PRK14443 10 VTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK-GPS 67 (93)
T ss_pred EEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc-CCC
Confidence 445445556667777777888899999877776679999998 44444444443 543
>PRK14426 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=92.18 E-value=0.73 Score=30.73 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=40.3
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+.. +|.+|+.. .|.|+...|
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~a~V 72 (92)
T PRK14426 10 VYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRSARV 72 (92)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCCeEE
Confidence 34444555566777777788888999987776667999999953 24444433 365554433
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative
Back Show alignment and domain information
Probab=92.09 E-value=0.45 Score=34.17 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=43.4
Q ss_pred cceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST 95 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~ 95 (113)
.++..+.++ |+| |++.+|. . .=+.+-++|.|.+.||+.|++. ++...|+|.+.....+
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-----~~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-----GGRLILQGKFTHFLLN 87 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-----CCEEEEEeecCHHHHH
Confidence 444555554 555 9999987 2 2368999999999999999983 3589999998775544
>PRK14450 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=92.06 E-value=0.85 Score=30.24 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=40.2
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCC-eEEEEcCC--hhHHHHHHHHHcC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELG-QVIQLQGD--QRKNVSTFLVQAG 101 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g-~~I~lQGD--~~~~i~~~L~~~G 101 (113)
+|+|.-.++-....+..+..+++=.|.|...+++. =+|++||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 34455556667777888888888999998766553 58999999 6667777775 45
>PRK14444 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.93 E-value=0.97 Score=30.16 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=37.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-+...+..+.++++=.|.|+..+++.=+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 9 FISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 34565556667777777778888999998766554599999994 335555544
>PRK14420 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.39 E-value=1.1 Score=29.67 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=40.0
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEH 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~ 107 (113)
|+|.-.++-....+..+..+++=.|.|...+++.=+|++||+- +.|.+|+.. .| |+...
T Consensus 8 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~-p~~a~ 68 (91)
T PRK14420 8 VDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKG-SPFSK 68 (91)
T ss_pred EEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhC-CCCCE
Confidence 3444445556666677777788899998776655699999984 666666655 36 45443
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5
Back Show alignment and domain information
Probab=90.60 E-value=0.88 Score=31.65 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=43.9
Q ss_pred eEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH-HHH
Q 033711 30 YVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST-FLV 98 (113)
Q Consensus 30 ~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~-~L~ 98 (113)
+..+.++ |+| -|++.+|. . .=+++-++|.|.+.||+.|++.. .+...|+|.+..+-.+ .|.
T Consensus 8 ~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~~~l~ 74 (110)
T smart00653 8 PPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----KGRLIVNGRFTPKKLQDLLR 74 (110)
T ss_pred CCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----CCeEEEEEeeCHHHHHHHHH
Confidence 3444444 544 68888987 2 23689999999999999999953 2589999997765444 443
>PRK14432 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.47 E-value=1.7 Score=29.16 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=40.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEc-CChhHHHHHHHHH--cCCCCCCCe
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQ-GDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQ-GD~~~~i~~~L~~--~G~~~~~~I 108 (113)
+|+|.-.++-....++.+.++++=.|.|...+++.=+|++| ||. +.|.+|+.. .| |+...|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~g-p~~a~V 70 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNG-NKYSNI 70 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhC-CCccEE
Confidence 34454455566677777777788899998776665689998 985 445555543 36 554443
>PRK14422 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.44 E-value=1.8 Score=28.92 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=40.7
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcCCCCCCC
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAGIVKKEH 107 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~~~G~~~~~~ 107 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+.. +...+.|.+ | |+...
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~-g-p~~a~ 72 (93)
T PRK14422 11 WVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG-D-DTPGR 72 (93)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh-C-CCCcE
Confidence 345555566677777888888889999987766656999999864 344444443 5 55443
>PRK14429 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.29 E-value=1.4 Score=29.17 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=40.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHHHcCCCCCCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLVQAGIVKKEH 107 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~~~G~~~~~~ 107 (113)
|+|.-.++-+...++.+..+++=.|.|...+++.=+|++||+-. +...++|. .| |+...
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~g-p~~a~ 68 (90)
T PRK14429 8 LTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE-VG-VPCTE 68 (90)
T ss_pred EEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-hC-CCceE
Confidence 34554556667777888888889999987665556999999864 45555554 36 55443
>PRK14433 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.34 E-value=1.8 Score=28.54 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=37.9
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|.+|||-. .|.+|+..
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 344544555667777778888889999987776556999999963 56665544
>PRK14439 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.24 E-value=1.8 Score=32.23 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=41.7
Q ss_pred EEEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 45 TTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 45 T~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
-.|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. .+...+.|.+.|
T Consensus 79 i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 79 AWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 345676677778888888888999999998777666799999985 444444444434
>PRK14437 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.96 E-value=2.1 Score=29.64 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=38.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+.. +...++|.
T Consensus 29 V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 29 VSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 45655666677778888888889999987776667999999864 44444554
>PRK14435 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.81 E-value=2.1 Score=28.41 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=36.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+- ++|.+|+..
T Consensus 8 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 8 VEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 4455555566677777777788899998777766799999986 335554443
>PRK14431 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.79 E-value=2.2 Score=28.36 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=41.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcCCCCCCCe
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAGIVKKEHI 108 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G~~~~~~I 108 (113)
|+|.-.++-+...++.+.++++=.|.|...++ +=+|++||+. .+...++|.+ |-|+...|
T Consensus 8 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~-g~p~~a~V 69 (89)
T PRK14431 8 VFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE-GASPASNV 69 (89)
T ss_pred EEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc-CCCCcEEE
Confidence 45555566677777888888889999987766 5799999985 4455555554 55444333
>PRK14427 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.53 E-value=2.1 Score=28.68 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=38.9
Q ss_pred eCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH--cCCCCCCCe
Q 033711 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ--AGIVKKEHI 108 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~--~G~~~~~~I 108 (113)
+|.-.++-+...++.+..+++=.|.|...+++.=+|++||+.. .|.+|+.. .| |+...|
T Consensus 13 ~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~l~~~-p~~a~V 73 (94)
T PRK14427 13 FGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDWLNSD-RAPGRV 73 (94)
T ss_pred EEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHhhC-CCCcEE
Confidence 3444455566677777788888999987665556999999874 35555544 25 554433
>PRK14425 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.53 E-value=1.9 Score=28.89 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=35.9
Q ss_pred eCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 48 QGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 48 ~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
+|.-.++-....++.+.++++=.|.|...+++.=+|++||+.- +...+.|.
T Consensus 13 ~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 13 TGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 4444455566667777777888999987766657999999744 56666665
>PRK14448 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.41 E-value=3 Score=27.64 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~ 98 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+- .+...++|.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 7 IVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred EEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45555566677777888888888999998877666799999986 334444443
>PRK14428 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.00 E-value=2.9 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=38.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-+.-.+..+.++++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 13 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 13 VVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 34555556667777788888888999998776666799999985 445555544
>PRK14423 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.82 E-value=2.7 Score=27.96 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-+...++.+.++++=.|.|...+++.=+|++||+.. .|.+|+..
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 11 VSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 34555566677778888888889999987655545899999854 45554433
>PRK14442 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.32 E-value=3.3 Score=27.50 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=36.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L 97 (113)
|+|.-.++-+...++.+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 10 v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~ 59 (91)
T PRK14442 10 VGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALE 59 (91)
T ss_pred EEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 45555566667777777788889999987766667999999854 344444
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Back Show alignment and domain information
Probab=87.12 E-value=1.9 Score=32.73 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=43.9
Q ss_pred cceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHH-HHHH
Q 033711 28 KEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVST-FLVQ 99 (113)
Q Consensus 28 ~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~-~L~~ 99 (113)
.++..+.++ |+| |++.||. . .=+.+-++|.|...||+.|++. ++...|+|.+...-.+ +|..
T Consensus 26 ~p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-----~~~~ii~G~~~~~~i~~~l~~ 93 (201)
T PRK12336 26 IPEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-----GGRAVFNGKFTEEDIQAAIDA 93 (201)
T ss_pred cCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-----CCEEEEEeeeCHHHHHHHHHH
Confidence 344445544 533 8999987 2 2368999999999999999994 3489999997664444 4433
>PRK14440 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.07 E-value=3.6 Score=27.33 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=35.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....+..+.++++=.|.|...+++.=+|.+||+- +.|.+|+..
T Consensus 9 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 9 VYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 3444445556666677777777889998766555699999976 555555544
>PRK14452 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.86 E-value=4.5 Score=27.91 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=37.0
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 97 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L 97 (113)
+|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+.. .|.+|+
T Consensus 25 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 25 LIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 445555566677777777788889999987766657999999953 455553
>PRK14445 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.83 E-value=2.6 Score=27.90 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=36.3
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~ 98 (113)
|+|.-.++-....++.+.++++=.|.|...+++.=+|++||+- .+...++|.
T Consensus 10 v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 10 VSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred EEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 4455455666777778888888999998766555699999986 334444444
>PRK14436 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.46 E-value=4.1 Score=27.08 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=36.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-+...++.+..+++=.|.|...+++.=+|++||+- ++|.+|+..
T Consensus 10 v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 10 IYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 3454455666777777778888899998776655699999986 335555544
>PRK14446 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.99 E-value=3.1 Score=27.67 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=39.0
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-+...+..+.++++=.|.|...+++.=+|++||+-. .+.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 345655666777888888899999999988777667999999853 44444433
>PRK14424 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.79 E-value=5 Score=26.95 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
+|+|.-.++-+...+..+..+++=.|.|...+++.=+|.+||+-. +...++|.
T Consensus 12 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 12 RVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred EEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 344555556667777777788888999987776556999999864 44444554
>PRK14421 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.64 E-value=4 Score=27.78 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=35.9
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
|+|.-.++-....+..+.++++=.|.|...+++.=+|++||+-. +...++|.
T Consensus 10 v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 10 IRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred EEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 44554555667777777788888999987665556999999864 34444444
>PRK14449 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.24 E-value=4 Score=26.98 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=37.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 9 v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 9 ITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 4554456667777788888888999998776665799999986 335555544
>PRK14438 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.15 E-value=4.1 Score=27.01 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+- ++|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 8 TVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 34555566667778888888889999998766554589999985 335555544
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []
Back Show alignment and domain information
Probab=84.35 E-value=2 Score=30.50 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=45.4
Q ss_pred CCcceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhH-HHHHHHHH
Q 033711 26 GSKEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRK-NVSTFLVQ 99 (113)
Q Consensus 26 ~~~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~-~i~~~L~~ 99 (113)
-..+++.+.++ |+ .=|++.+|. . .-+++-++|.|...||+.|++.. .+...|+|.+.. +|.++|.+
T Consensus 17 ~kmP~~~v~~e---G~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~----~~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 17 YKMPPPQVKIE---GK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDG----KGRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp -CCCT--EEEE---TS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEET----TTEEEEESSSSCCHHHHHHHH
T ss_pred eecCCCeEEEE---cc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECC----CCEEEEEEecCHHHHHHHHHH
Confidence 34455566555 53 558888887 1 23799999999999999999964 268999999765 44445544
Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
>PRK14447 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=84.24 E-value=4.9 Score=26.86 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=37.2
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCC-CeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEL-GQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~-g~~I~lQGD~~~~i~~~L~~ 99 (113)
.|+|.-.++-+...++.+.++++=.|.|...+++ .=+|++||+ .+.|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 3456556667777888888888899999876655 258999998 4455555443
>PRK14441 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=83.78 E-value=5.7 Score=26.44 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=36.5
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChh--HHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR--KNVSTFLV 98 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~--~~i~~~L~ 98 (113)
|+|.-.++-....+..+.++++=.|.|...+++.=+|++||+-. +...++|.
T Consensus 11 v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 11 VSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred EEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 44555566677777888888889999987665556999999843 34444443
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3
Back Show alignment and domain information
Probab=83.22 E-value=5.4 Score=25.96 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=37.1
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|++||+. +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 45565567778888888889999999998766655699999964 335554433
6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
>PRK14430 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=81.94 E-value=8.1 Score=25.72 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFL 97 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L 97 (113)
|.|.-.++-+...+..+.++++=.|.|...+++.=+|++||+- .+.+.++|
T Consensus 10 v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 10 AHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 3444445556667777777888899998776665699999974 34555555
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 113
d2if1a_ 126
Eukaryotic translation initiation factor eIF-1 (SU
100.0 d1d1ra_ 83
YciH {Escherichia coli [TaxId: 562]}
99.89 d1neea1 98
Translation initiation factor 2 beta, aIF2beta, N-
94.95 d1urra_ 97
Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila
94.42 d1w2ia_ 90
Acylphosphatase {Pyrococcus horikoshii [TaxId: 539
93.46 d1ulra_ 87
Acylphosphatase {Thermus thermophilus [TaxId: 274]
92.85 d1apsa_ 98
Acylphosphatase {Horse (Equus caballus) [TaxId: 97
88.32 d2acya_ 98
Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
88.17 d1gxua_ 88
Hydrogenase maturation protein HypF N-terminal dom
82.56
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-39 Score=228.15 Aligned_cols=111 Identities=56% Similarity=0.994 Sum_probs=104.3
Q ss_pred CCcccccCCCCCCccccccccCC--CCCCcceEEEEEEEecCCeeEEEEeCCCCcccHHHHHHHHhhhcccccEEEeCCC
Q 033711 1 MSDFDIQVPAAFDPFADAKAEDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPE 78 (113)
Q Consensus 1 ~~~~~~~~~~~fdp~~~~~~~~~--~~~~~~~I~I~~e~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~ 78 (113)
||.++||. +||||++....++ ++++..+|+|++++|+|||.||+|+||++++|+++|||.||++|||||||++++.
T Consensus 14 ~s~i~nl~--s~dpf~d~~~~~~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~~~~dlk~laK~lKk~~acggSVk~~~~ 91 (126)
T d2if1a_ 14 MSAIQNLH--SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPE 91 (126)
T ss_dssp GGGCSCCC--CCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTT
T ss_pred cccccccc--cCCCccccccccccCCCCCcceEEEEEEecCCCCCeEEEECCCCcccHHHHHHHHHHhcCCCceEEeCCC
Confidence 78999999 6899999876666 6678899999999999999999999999889999999999999999999998887
Q ss_pred CCeEEEEcCChhHHHHHHHHHcCCCCCCCeeecCC
Q 033711 79 LGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 113 (113)
Q Consensus 79 ~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 113 (113)
++.+|+||||+|++|.+||.++|++++++|.||||
T Consensus 92 ~~~~I~IQGD~r~~v~~~L~~~g~~~k~~I~vHg~ 126 (126)
T d2if1a_ 92 YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp TSSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred CCcEEEEcccHHHHHHHHHHHcCCCccccEEecCC
Confidence 88899999999999999999999999999999998
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.7e-24 Score=140.80 Aligned_cols=72 Identities=28% Similarity=0.477 Sum_probs=64.2
Q ss_pred cceEEEEEEEe-cCCeeEEEEeCCC-CcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCCCC
Q 033711 28 KEYVHIRVQQR-NGRKSLTTVQGLK-KEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVK 104 (113)
Q Consensus 28 ~~~I~I~~e~R-~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~~~ 104 (113)
...|+|+.+++ +++|.||+|+||+ +.+|+++||+.||++||||||+++ ++|+|||||+++|.+||.++||..
T Consensus 3 ~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsvk~-----~~I~lQGd~~~~v~~~L~~~G~~~ 76 (83)
T d1d1ra_ 3 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKGMKV 76 (83)
T ss_dssp CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHHHHTCEE
T ss_pred CeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEEEC-----CEEEEeCcHHHHHHHHHHHcCCce
Confidence 45788888764 3459999999999 999999999999999999999974 589999999999999999999953
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.95 E-value=0.012 Score=37.48 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=53.3
Q ss_pred CCcccccCCCCCCccccccccCCCCCCcceEEEEEEEecCCeeEEEEeCCC---C--cccHHHHHHHHhhhcccccEEEe
Q 033711 1 MSDFDIQVPAAFDPFADAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLK---K--EFSYNKILKDLKKEFCCNGTVVQ 75 (113)
Q Consensus 1 ~~~~~~~~~~~fdp~~~~~~~~~~~~~~~~I~I~~e~R~g~K~VT~V~Gl~---~--~~dlk~lak~lKkk~~cggsv~~ 75 (113)
|++-+.|.--+|+-.-+...+.+ .-..++..++++ |+| |++.++. . .=+++-++|.|.+.+||.|++.
T Consensus 1 m~~Y~~LL~R~~~~l~~~~~~~~-R~~mP~~~v~~e---Gkk--Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~- 73 (98)
T d1neea1 1 MDDYEKLLERAIDQLPPEVFETK-RFEVPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE- 73 (98)
T ss_dssp CCSSCCCCCSSSSSSCTTSCCCC-CCCCSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-
T ss_pred CccHHHHHHHHHHHCCcccCCCc-ceecCCceEEEe---cce--EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe-
Confidence 56666666333444332222221 222334444443 655 7888987 1 3379999999999999999983
Q ss_pred CCCCCeEEEEcCChhHHHHH-HHH
Q 033711 76 DPELGQVIQLQGDQRKNVST-FLV 98 (113)
Q Consensus 76 ~~~~g~~I~lQGD~~~~i~~-~L~ 98 (113)
++.+.|+|.+..+..+ .|.
T Consensus 74 ----~~~lii~G~~~~~~i~~~l~ 93 (98)
T d1neea1 74 ----GGRAILQGKFTHFLINERIE 93 (98)
T ss_dssp ----TTTEEEESSCSSSHHHHHHH
T ss_pred ----CCEEEEEeeeCHHHHHHHHH
Confidence 3469999997764443 443
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase 2 (Cg18505)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.42 E-value=0.13 Score=31.72 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=41.9
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCCh--hHHHHHHHHHcC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ--RKNVSTFLVQAG 101 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~--~~~i~~~L~~~G 101 (113)
|.|.-.++-....++.+.++++..|.|...+++.=+|++||+. .++..++|.+.|
T Consensus 12 V~G~VQGVGFR~~~~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~~ 68 (97)
T d1urra_ 12 IFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR 68 (97)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCC
T ss_pred EEEEecCcCChHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 5666667778888899999999999998877766799999984 344555665544
>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.46 E-value=0.15 Score=31.36 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=40.3
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|+|.-.++-+...++.+..+++-.|.|...+++.=+|.+||+ .+.|.+|+..
T Consensus 9 V~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 60 (90)
T d1w2ia_ 9 IYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGD-EERVEALIGW 60 (90)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHH
T ss_pred EEEeEeCcCChHHHHHHHHHcCCeEEEEECCCCCEEEEEECC-HHHHHHHHHH
Confidence 445446667788888888889999999877666678999998 5777777765
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Thermus thermophilus [TaxId: 274]
Probab=92.85 E-value=0.27 Score=29.96 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=39.9
Q ss_pred EEeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 46 TVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 46 ~V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
+|+|.-.++-....++.+..+++=.|.|...+++.=+|.+||+. +.|.+|+..
T Consensus 6 iV~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 58 (87)
T d1ulra_ 6 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPK-EALELFLHH 58 (87)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCH-HHHHHHHHH
T ss_pred EEEEEEeCccCHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 45665567778888888888899999998877777799999983 445554433
>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.32 E-value=0.32 Score=29.89 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=38.2
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHH
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 99 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~ 99 (113)
|.|.-.++-....++.+..+++..|.|...+++.=+|++||+ .+.|.+|+..
T Consensus 13 V~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 64 (98)
T d1apsa_ 13 VFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGP-EEKVNSMKSW 64 (98)
T ss_dssp EECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEE-HHHHHHHHHS
T ss_pred EEEeEcCcCcHHHHHHHHHHcCCeEEEEECCCCCEEEEEEcC-HHHHHHHHHH
Confidence 445555556666777777888899999876666579999997 4677777765
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.17 E-value=1 Score=27.61 Aligned_cols=55 Identities=20% Similarity=0.127 Sum_probs=40.6
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHH---HHcCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL---VQAGI 102 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L---~~~G~ 102 (113)
|+|--.++-....++....+++=.|.|...+++.=+|++||+ ...|.+|+ ...|-
T Consensus 13 V~G~VQGVGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l~~~gp 70 (98)
T d2acya_ 13 IFGKVQGVFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGP-ASKVRHMQEWLETKGS 70 (98)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHHHHTCS
T ss_pred EEEEEcCcCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEEC-HHHHHHHHHHHHhcCC
Confidence 445556667888888888999999999887776679999998 44455554 44554
>d1gxua_ d.58.10.1 (A:) Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP)
species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=3.3 Score=24.68 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=38.7
Q ss_pred EeCCCCcccHHHHHHHHhhhcccccEEEeCCCCCeEEEEcCChhHHHHHHHHHcCC
Q 033711 47 VQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGI 102 (113)
Q Consensus 47 V~Gl~~~~dlk~lak~lKkk~~cggsv~~~~~~g~~I~lQGD~~~~i~~~L~~~G~ 102 (113)
|+|.-.++-....++.+..+++=.|.|...+++ -++.+||+-... .+.|.+.|-
T Consensus 10 V~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG-v~~~~~~~~~~f-i~~l~~~gp 63 (88)
T d1gxua_ 10 IRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDPEVF-LVQLYQHCP 63 (88)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCCHHH-HHHHHHTCC
T ss_pred EEEEEeCccCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEcCHHHH-HHHHHHcCC
Confidence 445445566777888888888899999876655 789999986554 455556664
