Citrus Sinensis ID: 033723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKV
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEcccHHHHHHHHcccccccccEEEccccccccccccEEcccccccccccEEEEEEEccccccccccHHHHcEEEEEEcccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEcccccccccEEEEEEccHHHHHHHHccccccccEEEEccccEEEcccccEEEccccccccEEEEEEEEEccccccccHHHHHHHHHEHEEHccccHHHHHHHccc
Coil and Loop (DISEMBL)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELgnavpkepvlflkptssylgnggtievphpldslhHEVELAVVIGQkardvpettamDYVGGYAVALDMTAREIQSSAKV
Flexible Loop (DISEMBL)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKElgnavpkepVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKV
Low Complexity Region (SEG)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKV
Disordered region (IsUnstruct)
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMT**********
Disordered Region (DISOPRED)
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSA*V
Disordered Region (DISEMBL)
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAR********
Disordered Region (DISPRO)
****SSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q86I22	218	Acylpyruvase FAHD1, mitoc	yes	no	0.928	0.477	0.619	4e-32
Q5RDW0	224	Acylpyruvase FAHD1, mitoc	yes	no	0.964	0.482	0.527	2e-28
Q6P587	224	Acylpyruvase FAHD1, mitoc	yes	no	0.964	0.482	0.527	2e-28
Q2HJ98	221	Acylpyruvase FAHD1, mitoc	yes	no	0.964	0.488	0.518	5e-28
Q6AYQ8	221	Acylpyruvase FAHD1, mitoc	yes	no	0.964	0.488	0.481	4e-26
P34673	214	Uncharacterized protein Z	yes	no	0.857	0.448	0.572	5e-26
Q8R0F8	227	Acylpyruvase FAHD1, mitoc	yes	no	0.964	0.475	0.472	5e-26
O58377	230	Uncharacterized protein P	yes	no	0.857	0.417	0.489	5e-24
Q9UYW0	225	Uncharacterized protein P	yes	no	0.857	0.426	0.489	2e-23
O28058	250	Uncharacterized protein A	yes	no	0.830	0.372	0.473	7e-20

>sp|Q86I22|FAHD1_DICDI Acylpyruvase FAHD1, mitochondrial OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 1/105 (0%)

Query: 8   VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNG-GTIEVPHPLDSL 66
           + K  + G KIVAVGRNYA HAKELGN +P EP  FLKPTSSYL  G G IE+P     +
Sbjct: 1   MNKFWETGRKIVAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDI 60

Query: 67  HHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           HHEVEL +VIG+K RD+   +AMDYV GY +ALDMT+R+ QS AK
Sbjct: 61  HHEVELGIVIGKKGRDIDLKSAMDYVSGYTLALDMTSRDQQSIAK 105

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 5

>sp|Q5RDW0|FAHD1_PONAB Acylpyruvase FAHD1, mitochondrial OS=Pongo abelii GN=FAHD1 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 75/108 (69%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 6   ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct: 66  RNLHHELELGVVMGRRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 113

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6P587|FAHD1_HUMAN Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 75/108 (69%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 6   ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct: 66  RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 113

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q2HJ98|FAHD1_BOVIN Acylpyruvase FAHD1, mitochondrial OS=Bos taurus GN=FAHD1 PE=2 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 74/108 (68%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           AS  + +  + G  IV VGRNYA H +E+ +A P EPVLFLKP+++Y   G  + VP   
Sbjct: 3   ASRPLSRFWEWGKNIVCVGRNYADHVREMQSAAPSEPVLFLKPSTAYAPEGSPVLVPAYT 62

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            +LHHE+ELAVV+G++ R V E  AMDYV GYA+ LDMTAR++Q   K
Sbjct: 63  RNLHHELELAVVMGKRCRAVSEAAAMDYVAGYALCLDMTARDVQDECK 110

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6AYQ8|FAHD1_RAT Acylpyruvase FAHD1, mitochondrial OS=Rattus norvegicus GN=Fahd1 PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 72/108 (66%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           ++  + +  + G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P   
Sbjct: 3   STKPLSRFWEWGKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYC 62

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            +LHHEVEL V++G++   VPE  AMDYV GYA+ LDMTAR++Q   K
Sbjct: 63  RNLHHEVELGVLLGRRGEAVPEAAAMDYVAGYALCLDMTARDVQDECK 110

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|P34673|YO23_CAEEL Uncharacterized protein ZK688.3 OS=Caenorhabditis elegans GN=ZK688.3 PE=3 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 69/96 (71%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           TKIV VGRNY  HA ELGNA+PK+P+LF+K  +S++  G  I  P    +LH EVEL VV
Sbjct: 12  TKIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVV 71

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           I +KA  + ++ AMDY+GGY VALDMTAR+ Q  AK
Sbjct: 72  ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAK 107

Caenorhabditis elegans (taxid: 6239)

>sp|Q8R0F8|FAHD1_MOUSE Acylpyruvase FAHD1, mitochondrial OS=Mus musculus GN=Fahd1 PE=1 SV=2

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 72/108 (66%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           ++  + +  + G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P   
Sbjct: 9   STKPLSRFWEWGKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYC 68

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            +LHHEVEL V++G++   +PE  AMDYV GYA+ LDMTAR++Q   K
Sbjct: 69  RNLHHEVELGVLLGKRGEAIPEAAAMDYVAGYALCLDMTARDVQEECK 116

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|O58377|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 74/96 (77%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           TKIVA+ +NYA HA+E+G+  P+EP++FLKP S+ +G G +I +P     + HEVELAV+
Sbjct: 21  TKIVALAKNYAEHAREMGSEPPEEPIIFLKPPSALIGPGSSIILPRRSKRVDHEVELAVI 80

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           +G++A++VP + A DY+ GY + LD+TAR++Q+ A+
Sbjct: 81  MGKRAKNVPASKAFDYILGYTIILDITARDLQAEAR 116

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

>sp|Q9UYW0|Y1397_PYRAB Uncharacterized protein PYRAB13970 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB13970 PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 71/96 (73%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           TKI+A+ +NYA HA+E+G+  P+EPV+FLKP S+ +G    I +P     + HEVELAV+
Sbjct: 16  TKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVI 75

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           IG++A++VP   A DY+ GY + LD+TAR++Q+ A+
Sbjct: 76  IGKRAKNVPAEKAFDYILGYTILLDITARDLQAEAR 111

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

>sp|O28058|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 65/93 (69%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +KI+AVG NY  HA+EL   VP+EP+LF+KP+++ +G+   I +P     + +E ELAVV
Sbjct: 44  SKIIAVGLNYIDHAEELNMPVPEEPILFMKPSTAVIGHDDCIILPQISQRVDYEGELAVV 103

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQS 108
           I +  R+VPET A DY+ GY    D+TAR++Q+
Sbjct: 104 IAEDCRNVPETNAADYILGYTCFNDVTARDLQA 136

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
255551813	226	fumarylacetoacetate hydrolase, putative	0.991	0.491	0.900	8e-52
225431770	226	PREDICTED: acylpyruvase FAHD1, mitochond	0.991	0.491	0.909	5e-51
224110404	226	predicted protein [Populus trichocarpa]	0.991	0.491	0.846	9e-50
16209656	223	AT4g15940/dl4011w [Arabidopsis thaliana]	0.964	0.484	0.833	7e-49
15234757	222	fumarylacetoacetate hydrolase-like prote	0.964	0.486	0.833	8e-49
297804628	222	AT4g15940/dl4011w [Arabidopsis lyrata su	0.964	0.486	0.814	4e-48
7485073	367	hypothetical protein - Arabidopsis thali	0.964	0.294	0.833	1e-47
51969474	131	putative decarboxilase [Arabidopsis thal	0.973	0.832	0.779	3e-45
145332597	170	fumarylacetoacetate hydrolase [Arabidops	0.955	0.629	0.785	3e-45
15228286	224	fumarylacetoacetate hydrolase [Arabidops	0.955	0.477	0.785	5e-45

>gi|255551813|ref|XP_002516952.1| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi|223544040|gb|EEF45566.1| fumarylacetoacetate hydrolase, putative [Ricinus communis]

 Score =  207 bits (526), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 100/111 (90%), Positives = 106/111 (95%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           MATA S VQKL+Q GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL NGGTIE+P
Sbjct: 1   MATACSGVQKLLQVGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTIEIP 60

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           HPL+SL HEVELAVVIGQKARDVP+TTAMDYVGGYA+ALDMTAREIQ+SAK
Sbjct: 61  HPLESLDHEVELAVVIGQKARDVPQTTAMDYVGGYALALDMTAREIQASAK 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431770|ref|XP_002270782.1| PREDICTED: acylpyruvase FAHD1, mitochondrial [Vitis vinifera] gi|296083339|emb|CBI22975.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (519), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 105/111 (94%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           MATASSA  KL+Q GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL NGGTI VP
Sbjct: 1   MATASSAYLKLLQMGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTILVP 60

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           HPL+SLHHEVELAVVIGQKARDVPE+ AMDYVGGYAVALDMTAREIQ+SAK
Sbjct: 61  HPLESLHHEVELAVVIGQKARDVPESAAMDYVGGYAVALDMTAREIQASAK 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110404|ref|XP_002315509.1| predicted protein [Populus trichocarpa] gi|118488589|gb|ABK96107.1| unknown [Populus trichocarpa] gi|222864549|gb|EEF01680.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 94/111 (84%), Positives = 105/111 (94%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           MA+ S+ +QKL+  GTKIVAVGRNYAAHAKELGNAVPKEPVLF+KPTSSYL NGGTIE+P
Sbjct: 1   MASPSAGIQKLLHVGTKIVAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYLENGGTIEIP 60

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            PL+SLHHEVELAVVIGQKARDVPE+TAMDYVGGYA+ALDMTAREIQ++AK
Sbjct: 61  QPLESLHHEVELAVVIGQKARDVPESTAMDYVGGYALALDMTAREIQATAK 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16209656|gb|AAL14388.1| AT4g15940/dl4011w [Arabidopsis thaliana] gi|21593651|gb|AAM65618.1| isomerase like protein [Arabidopsis thaliana] gi|58331823|gb|AAW70409.1| At4g15940 [Arabidopsis thaliana]

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/108 (83%), Positives = 102/108 (94%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           DSLHHEVELA+VIGQKARDVPE+ AMDY+GGYAVALDMTARE+Q+SAK
Sbjct: 62  DSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAK 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234757|ref|NP_193329.1| fumarylacetoacetate hydrolase-like protein [Arabidopsis thaliana] gi|5302783|emb|CAB46032.1| isomerase like protein [Arabidopsis thaliana] gi|7268342|emb|CAB78636.1| isomerase like protein [Arabidopsis thaliana] gi|332658268|gb|AEE83668.1| fumarylacetoacetate hydrolase-like protein [Arabidopsis thaliana]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 90/108 (83%), Positives = 102/108 (94%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           DSLHHEVELA+VIGQKARDVPE+ AMDY+GGYAVALDMTARE+Q+SAK
Sbjct: 62  DSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAK 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804628|ref|XP_002870198.1| AT4g15940/dl4011w [Arabidopsis lyrata subsp. lyrata] gi|297316034|gb|EFH46457.1| AT4g15940/dl4011w [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 102/108 (94%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q++ + GTKIV VGRNYAAHAKELGN+VPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNSVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           DSLHHEVELA+VIGQKARDVPE+ AMDY+GGYAVALDMTARE+Q++AK
Sbjct: 62  DSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQATAK 109

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7485073|pir||C71425 hypothetical protein - Arabidopsis thaliana

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 90/108 (83%), Positives = 102/108 (94%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           DSLHHEVELA+VIGQKARDVPE+ AMDY+GGYAVALDMTARE+Q+SAK
Sbjct: 62  DSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAK 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969474|dbj|BAD43429.1| putative decarboxilase [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 99/109 (90%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKV 112
           DSLHHEVELAVVIGQKARDVPE  AM+Y+GGYA+ALDMTARE+Q SA V
Sbjct: 62  DSLHHEVELAVVIGQKARDVPERLAMNYIGGYALALDMTARELQVSAMV 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332597|ref|NP_001078164.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana] gi|332642333|gb|AEE75854.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 98/107 (91%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSA 110
           DSLHHEVELAVVIGQKARDVPE  AM+Y+GGYA+ALDMTARE+Q SA
Sbjct: 62  DSLHHEVELAVVIGQKARDVPERLAMNYIGGYALALDMTARELQVSA 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228286|ref|NP_188292.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana] gi|11994625|dbj|BAB02762.1| isomerase-like protein [Arabidopsis thaliana] gi|21593084|gb|AAM65033.1| putative decarboxilase [Arabidopsis thaliana] gi|332642332|gb|AEE75853.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 98/107 (91%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct: 2   ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSA 110
           DSLHHEVELAVVIGQKARDVPE  AM+Y+GGYA+ALDMTARE+Q SA
Sbjct: 62  DSLHHEVELAVVIGQKARDVPERLAMNYIGGYALALDMTARELQVSA 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2129815	222	AT4G15940 [Arabidopsis thalian	0.964	0.486	0.833	1e-45
TAIR|locus:2089373	224	AT3G16700 [Arabidopsis thalian	0.955	0.477	0.785	1.9e-42
DICTYBASE|DDB_G0275071	218	fahd1 "Fumarylacetoacetate (FA	0.928	0.477	0.619	1.6e-29
UNIPROTKB|Q6P587	224	FAHD1 "Acylpyruvase FAHD1, mit	0.964	0.482	0.527	1.1e-25
UNIPROTKB|Q5RDW0	224	FAHD1 "Acylpyruvase FAHD1, mit	0.964	0.482	0.527	1.1e-25
ZFIN|ZDB-GENE-050522-448	219	fahd1 "fumarylacetoacetate hyd	0.928	0.474	0.528	1.4e-25
UNIPROTKB|Q2HJ98	221	FAHD1 "Acylpyruvase FAHD1, mit	0.964	0.488	0.518	1.8e-25
WB|WBGene00022798	214	fahd-1 [Caenorhabditis elegans	0.857	0.448	0.572	1.2e-24
RGD|1304560	221	Fahd1 "fumarylacetoacetate hyd	0.866	0.438	0.536	6.8e-24
UNIPROTKB|Q6AYQ8	221	Fahd1 "Acylpyruvase FAHD1, mit	0.866	0.438	0.536	6.8e-24

TAIR|locus:2129815 AT4G15940 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 90/108 (83%), Positives = 102/108 (94%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct:     2 ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             DSLHHEVELA+VIGQKARDVPE+ AMDY+GGYAVALDMTARE+Q+SAK
Sbjct:    62 DSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAK 109

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2089373 AT3G16700 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 84/107 (78%), Positives = 98/107 (91%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct:     2 ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSA 110
             DSLHHEVELAVVIGQKARDVPE  AM+Y+GGYA+ALDMTARE+Q SA
Sbjct:    62 DSLHHEVELAVVIGQKARDVPERLAMNYIGGYALALDMTARELQVSA 108

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

DICTYBASE|DDB_G0275071 fahd1 "Fumarylacetoacetate (FAA) hydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 65/105 (61%), Positives = 77/105 (73%)

Query:     8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNG-GTIEVPHPLDSL 66
             + K  + G KIVAVGRNYA HAKELGN +P EP  FLKPTSSYL  G G IE+P     +
Sbjct:     1 MNKFWETGRKIVAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDI 60

Query:    67 HHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             HHEVEL +VIG+K RD+   +AMDYV GY +ALDMT+R+ QS AK
Sbjct:    61 HHEVELGIVIGKKGRDIDLKSAMDYVSGYTLALDMTSRDQQSIAK 105

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q6P587 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 57/108 (52%), Positives = 75/108 (69%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct:     6 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
              +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct:    66 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 113

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=IDA

GO:0018773 "acetylpyruvate hydrolase activity" evidence=IDA

UNIPROTKB|Q5RDW0 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 57/108 (52%), Positives = 75/108 (69%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct:     6 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
              +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct:    66 RNLHHELELGVVMGRRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 113

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

ZFIN|ZDB-GENE-050522-448 fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 55/104 (52%), Positives = 72/104 (69%)

Query:     8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
             + +  + G KI+ VGRNYA HA EL NA+P EPVLFLKP S+Y+  G  I VP    +LH
Sbjct:     6 ISRFWEWGRKIICVGRNYADHAVELKNAIPSEPVLFLKPPSAYIKKGSPILVPFYSSNLH 65

Query:    68 HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             HEVEL VVIG+    +P+ +AM++V GY + LDMTAR++Q   K
Sbjct:    66 HEVELGVVIGKGGTAIPQASAMEHVAGYVLCLDMTARDVQDECK 109

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2HJ98 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 56/108 (51%), Positives = 74/108 (68%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             AS  + +  + G  IV VGRNYA H +E+ +A P EPVLFLKP+++Y   G  + VP   
Sbjct:     3 ASRPLSRFWEWGKNIVCVGRNYADHVREMQSAAPSEPVLFLKPSTAYAPEGSPVLVPAYT 62

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
              +LHHE+ELAVV+G++ R V E  AMDYV GYA+ LDMTAR++Q   K
Sbjct:    63 RNLHHELELAVVMGKRCRAVSEAAAMDYVAGYALCLDMTARDVQDECK 110

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00022798 fahd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/96 (57%), Positives = 69/96 (71%)

Query:    16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
             TKIV VGRNY  HA ELGNA+PK+P+LF+K  +S++  G  I  P    +LH EVEL VV
Sbjct:    12 TKIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVV 71

Query:    76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             I +KA  + ++ AMDY+GGY VALDMTAR+ Q  AK
Sbjct:    72 ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAK 107

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

RGD|1304560 Fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query:    15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
             G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P    +LHHEVEL V
Sbjct:    14 GKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYCRNLHHEVELGV 73

Query:    75 VIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             ++G++   VPE  AMDYV GYA+ LDMTAR++Q   K
Sbjct:    74 LLGRRGEAVPEAAAMDYVAGYALCLDMTARDVQDECK 110

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

UNIPROTKB|Q6AYQ8 Fahd1 "Acylpyruvase FAHD1, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query:    15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
             G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P    +LHHEVEL V
Sbjct:    14 GKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYCRNLHHEVELGV 73

Query:    75 VIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             ++G++   VPE  AMDYV GYA+ LDMTAR++Q   K
Sbjct:    74 LLGRRGEAVPEAAAMDYVAGYALCLDMTARDVQDECK 110

GO:0005743 "mitochondrial inner membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DL4011W	fumarylacetoacetate hydrolase family protein; fumarylacetoacetate hydrolase family protein; FUNCTIONS IN- catalytic activity; INVOLVED IN- metabolic process; LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Fumarylacetoacetase, C-terminal-like (InterPro-IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro-IPR011234); BEST Arabidopsis thaliana protein match is- fumarylacetoacetate hydrolase family protein (TAIR-AT3G16700.1); Has 7514 Blast hits to 7414 proteins in 1058 species- Archae - 130; Bacteria - [...] (222 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AtGNA1	AtGNA1 (Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1); N-acetyltransferase/ glu [...] (149 aa)							•		0.599
	ATAPRL7	ATAPRL7 (APR-like 7); Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a [...] (289 aa)							•		0.561
	ATGSTZ1	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1); catalytic/ glutathione transfe [...] (228 aa)	•			•		•	•		0.553
	ATGSTZ2	ATGSTZ2; catalytic/ glutathione transferase; Encodes glutathione transferase belonging to the z [...] (223 aa)	•					•	•		0.540
	AT3G60510	enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase family protein; FUN [...] (401 aa)							•		0.537
	AT3G50520	phosphoglycerate/bisphosphoglycerate mutase family protein; phosphoglycerate/bisphosphoglycerat [...] (230 aa)							•		0.536
	AT5G04120	phosphoglycerate/bisphosphoglycerate mutase family protein; phosphoglycerate/bisphosphoglycerat [...] (238 aa)							•		0.505
	AT5G10860	CBS domain-containing protein; CBS domain-containing protein; INVOLVED IN- response to salt str [...] (206 aa)							•		0.502
	ALDH5F1	ALDH5F1; 3-chloroallyl aldehyde dehydrogenase/ NAD or NADH binding / succinate-semialdehyde deh [...] (528 aa)	•						•		0.470
	CNX3	CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic; COFACTOR OF NITRA [...] (270 aa)	•						•		0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
COG0179	266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	6e-39
pfam01557	207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	3e-31
PRK10691	219	PRK10691, PRK10691, hypothetical protein; Provisio	1e-27
TIGR02303	245	TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg	6e-26
PRK15203	429	PRK15203, PRK15203, 4-hydroxyphenylacetate degrada	1e-18
PRK12764	500	PRK12764, PRK12764, hypothetical protein; Provisio	4e-12
TIGR02305	205	TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate deg	4e-11
PRK15203	429	PRK15203, PRK15203, 4-hydroxyphenylacetate degrada	2e-05

>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  130 bits (329), Expect = 6e-39
 Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 17  KIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
           KIV VGRNYA HA+E+G    +P+EPV FLKP ++ +G    I +P     L +E ELAV
Sbjct: 61  KIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAV 120

Query: 75  VIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           VIG++ +DV    A+DY+ GY +  D+TAR++Q   K
Sbjct: 121 VIGKRGKDVSVEDALDYIAGYTIGNDVTARDLQMEEK 157

Length = 266

>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family

 Score =  108 bits (273), Expect = 3e-31
 Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKE----PVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVEL 72
           KI+ VG NY +HAKELG+ V       PV FLKP S+ +G G  I +P   + L +E EL
Sbjct: 1   KIIGVGLNYTSHAKELGSGVEPPDYGPPVFFLKPPSALVGPGDPIVLPRGSERLDYEAEL 60

Query: 73  AVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           AVVIG+  R V    A+DYV GY +A D++AR++Q
Sbjct: 61  AVVIGKDLRAVTPEEALDYVAGYTLANDVSARDLQ 95

This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase, encoded by mhpD in E. coli, is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase. Length = 207

>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional

 Score =  100 bits (250), Expect = 1e-27
 Identities = 44/96 (45%), Positives = 60/96 (62%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +K+V VG NYA H KE+G+A P+EPVLF+KP ++       + +P    S+HHEVELAV+
Sbjct: 17  SKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVL 76

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           IG   R   E      + GY VALD+T R++Q   K
Sbjct: 77  IGATLRQATEEHVRKAIAGYGVALDLTLRDLQGKMK 112

Length = 219

>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

 Score = 96.4 bits (240), Expect = 6e-26
 Identities = 40/89 (44%), Positives = 57/89 (64%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
            I A+G NYA HA ELG + P+EP++FLK  ++  G+ G    P  +  +H+E ELAVV+
Sbjct: 44  TIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVV 103

Query: 77  GQKARDVPETTAMDYVGGYAVALDMTARE 105
           G+ A++V    AMDYV GY +A D   R+
Sbjct: 104 GKTAKNVKREDAMDYVLGYTIANDYAIRD 132

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 245

>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

 Score = 79.3 bits (195), Expect = 1e-18
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           + T  S        GT + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P
Sbjct: 209 VTTHKSFPTPPHPHGT-LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRP 267

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTARE 105
           + ++ +H+E EL VVIG++AR V E  AMDYV GY V  D   R+
Sbjct: 268 NNIEYMHYEAELVVVIGKQARKVSEADAMDYVAGYTVCNDYAIRD 312

Length = 429

>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 8   VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
           V  L+    K++AV  NY + A + G   P +P  FLKP+SS   +GGT+E P   + L 
Sbjct: 14  VAPLLARPGKVIAVHLNYPSRAAQRGRT-PAQPSYFLKPSSSLALSGGTVERPAGTELLA 72

Query: 68  HEVELAVVIGQKARDVPETTAMDYVGGYAVALDM 101
            E E+A+VIG+ AR V    A  +V     A D+
Sbjct: 73  FEGEIALVIGRPARRVSPEDAWSHVAAVTAANDL 106

Length = 500

>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

 Score = 56.7 bits (137), Expect = 4e-11
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 17  KIVAVGRNYAAHAKELGNAV--------PKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
            +  V  NY      L  A         PK PVL++KP +++ G G  I +P  ++ L  
Sbjct: 2   TVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRS 61

Query: 69  EVELAVVIGQKARDVPETTAMDYVGGYAVALDMT 102
              LA+V+G+ A  V E  A+DYV GYA+  D++
Sbjct: 62  GATLALVVGRTACRVREEEALDYVAGYALVNDVS 95

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 205

>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 34  NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVG 93
            A PK  V F+KP ++ +  G  I  P   + +     +A+++G+ A  V E  A +Y+ 
Sbjct: 29  KAPPKTAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIA 87

Query: 94  GYAVALDMTARE 105
           GYA+A D++  E
Sbjct: 88  GYALANDVSLPE 99

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
COG0179	266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
TIGR02303	245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535	217	consensus Predicted fumarylacetoacetate hydralase	100.0
PRK10691	219	hypothetical protein; Provisional	100.0
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.97
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.97
TIGR02305	205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	99.95
PRK12764	500	hypothetical protein; Provisional	99.95
PLN02856	424	fumarylacetoacetase	99.93
PF01557	218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	99.91
TIGR01266	415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	99.9
KOG2843	420	consensus Fumarylacetoacetase [Carbohydrate transp	99.28
TIGR03220	255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	98.49
COG3970	379	Fumarylacetoacetate (FAA) hydrolase family protein	97.9
PRK11342	262	mhpD 2-keto-4-pentenoate hydratase; Provisional	97.73
TIGR02312	267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	97.49
COG3802	333	GguC Uncharacterized protein conserved in bacteria	95.36
COG3971	264	2-keto-4-pentenoate hydratase [Secondary metabolit	93.26
TIGR03218	263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	91.38

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=9.5e-37  Score=234.34  Aligned_cols=100  Identities=45%  Similarity=0.773  Sum_probs=95.0

Q ss_pred             hhhccCCCcEEEEccCcHHHHHHhCCC--CCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723            9 QKLIQAGTKIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (112)
Q Consensus         9 ~~~l~~~~ki~~vg~NY~~h~~e~~~~--~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~   86 (112)
                      ..++++++||||+|.||++|++||+..  .|+.|++|+|+++++++++++|.+|+.+.++|||+||||||||.+|+|+++
T Consensus        53 ~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v~~e  132 (266)
T COG0179          53 LAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDVSVE  132 (266)
T ss_pred             ccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCCCHH
Confidence            455567799999999999999999875  789999999999999999999999999999999999999999999999999


Q ss_pred             cHhhhhceEEEEeecchHhHHh
Q 033723           87 TAMDYVGGYAVALDMTAREIQS  108 (112)
Q Consensus        87 ~A~~~I~Gyti~nD~TaRd~q~  108 (112)
                      +|++||+|||++||+|+||+|.
T Consensus       133 ~A~d~I~GYti~nD~T~Rd~Q~  154 (266)
T COG0179         133 DALDYIAGYTIGNDVTARDLQM  154 (266)
T ss_pred             HHHhhheEEeeeeecchhcchh
Confidence            9999999999999999999994

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

Probab=100.00  E-value=4.2e-36  Score=228.28  Aligned_cols=96  Identities=42%  Similarity=0.659  Sum_probs=92.6

Q ss_pred             CCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhc
Q 033723           14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVG   93 (112)
Q Consensus        14 ~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~   93 (112)
                      +|+||+|+|.||++|++|++.+.|+.|++|+|+++++++++++|.+|.....+|||+||++||||.++++++++|++||+
T Consensus        41 ~p~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~v~~~~A~~~I~  120 (245)
T TIGR02303        41 EPGTIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKNVKREDAMDYVL  120 (245)
T ss_pred             CCCeEEEEeCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCCCCHHHHhhhee
Confidence            36899999999999999999888999999999999999999999999998899999999999999999999999999999


Q ss_pred             eEEEEeecchHhHHhh
Q 033723           94 GYAVALDMTAREIQSS  109 (112)
Q Consensus        94 Gyti~nD~TaRd~q~~  109 (112)
                      |||++||+|+||+|++
T Consensus       121 Gytv~nD~T~Rd~q~~  136 (245)
T TIGR02303       121 GYTIANDYAIRDYLEN  136 (245)
T ss_pred             EEEEEeecchHHHHhh
Confidence            9999999999999964

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]

Probab=100.00  E-value=5.1e-36  Score=221.05  Aligned_cols=105  Identities=63%  Similarity=0.927  Sum_probs=100.8

Q ss_pred             HHhhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723            7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (112)
Q Consensus         7 ~~~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~   86 (112)
                      -+..++..++||+|+|.||.+|++|++.+.|++|+||+|+.+|+++++++|.+|.....+|||+||++||||.|+++++.
T Consensus         4 ~~~~~~~~~~KIVcVg~NY~dh~~E~~~~~PkeP~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v~~~   83 (217)
T KOG1535|consen    4 MLLRPLKWPTKIVCVGRNYADHCKELNNPVPKEPFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSVKKK   83 (217)
T ss_pred             chhhhhhcCCeEEEecccHHHHHHHhCCCCCCCCeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccCChh
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHhhhhceEEEEeecchHhHHhhhC
Q 033723           87 TAMDYVGGYAVALDMTAREIQSSAK  111 (112)
Q Consensus        87 ~A~~~I~Gyti~nD~TaRd~q~~~k  111 (112)
                      +||+||+||+++.|+|+||||.++|
T Consensus        84 ~amd~v~Gy~valDmtARd~q~~ak  108 (217)
T KOG1535|consen   84 DAMDYVGGYAVALDMTARDWQDEAK  108 (217)
T ss_pred             hcccccccEEEEeeccchhhhhhhh
Confidence            9999999999999999999998865

>PRK10691 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=209.68  Aligned_cols=96  Identities=45%  Similarity=0.761  Sum_probs=92.5

Q ss_pred             CCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhce
Q 033723           15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG   94 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~G   94 (112)
                      .+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+...++|||+|||+||||+++++++++|++||+|
T Consensus        16 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~~~V~g   95 (219)
T PRK10691         16 VSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVRKAIAG   95 (219)
T ss_pred             CCcEEEEecCHHHHHHHhCCCCCCCCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHhhhheE
Confidence            49999999999999999999889999999999999999999999999988999999999999999999999999999999


Q ss_pred             EEEEeecchHhHHhhh
Q 033723           95 YAVALDMTAREIQSSA  110 (112)
Q Consensus        95 yti~nD~TaRd~q~~~  110 (112)
                      ||++||+|+||+|...
T Consensus        96 yt~~nDvt~r~~q~~~  111 (219)
T PRK10691         96 YGVALDLTLRDLQGKM  111 (219)
T ss_pred             EEEEEEeEhhhhhhhh
Confidence            9999999999999653

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.97  E-value=4.9e-32  Score=219.59  Aligned_cols=100  Identities=40%  Similarity=0.630  Sum_probs=95.1

Q ss_pred             hhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHh
Q 033723           10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAM   89 (112)
Q Consensus        10 ~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~   89 (112)
                      .++++++||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+.+..+|||+|||+||||+++++++++|+
T Consensus       217 ~p~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~ea~  296 (429)
T PRK15203        217 TPPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEADAM  296 (429)
T ss_pred             cCCCCCCeEEEEcCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHHHh
Confidence            35556799999999999999999988899999999999999999999999999899999999999999999999999999


Q ss_pred             hhhceEEEEeecchHhHHhh
Q 033723           90 DYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        90 ~~I~Gyti~nD~TaRd~q~~  109 (112)
                      +||+|||++||+|+||+|.+
T Consensus       297 ~~V~Gy~~~nD~t~rd~q~~  316 (429)
T PRK15203        297 DYVAGYTVCNDYAIRDYLEN  316 (429)
T ss_pred             hheeEEEEEEeccchhhhhh
Confidence            99999999999999999965

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.97  E-value=4.3e-31  Score=214.09  Aligned_cols=93  Identities=29%  Similarity=0.464  Sum_probs=86.7

Q ss_pred             CCcEEEEccCcHHHHHHhC--------CCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723           15 GTKIVAVGRNYAAHAKELG--------NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~--------~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~   86 (112)
                      .+||+|+|+||++|.+|++        .+.|+.|++|+||++++++++++|.+|.. .++|||+||++||||.+++++++
T Consensus         2 ~~ki~~vg~Ny~~~~~~~~~~~~~~~~~~~p~~P~~F~Kp~~al~g~~~~i~~P~~-~~~~~E~EL~vvIGk~~~~v~~~   80 (429)
T PRK15203          2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREE   80 (429)
T ss_pred             CceEEEEeCchHHHHHhhhhhccccccCCCCCCCEEEecCcceeeCCCCcEECCCC-CCceEEEEEEEEECCccCCCCHH
Confidence            3799999999999999864        24589999999999999999999999987 47999999999999999999999


Q ss_pred             cHhhhhceEEEEeecchHhHHh
Q 033723           87 TAMDYVGGYAVALDMTAREIQS  108 (112)
Q Consensus        87 ~A~~~I~Gyti~nD~TaRd~q~  108 (112)
                      +|++||+|||++||+|+||+|.
T Consensus        81 ~A~~~V~Gyti~nD~t~rd~q~  102 (429)
T PRK15203         81 DAAEYIAGYALANDVSLPEESF  102 (429)
T ss_pred             HHhhheeEEEEEEEeechhhcc
Confidence            9999999999999999999985

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

Probab=99.95  E-value=2.1e-28  Score=181.33  Aligned_cols=93  Identities=35%  Similarity=0.578  Sum_probs=87.7

Q ss_pred             CcEEEEccCcHHHHHHhCC--------CCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhc
Q 033723           16 TKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT   87 (112)
Q Consensus        16 ~ki~~vg~NY~~h~~e~~~--------~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~   87 (112)
                      +||+|+|.||++|++|++.        +.|+.|.+|+|+++++++++++|.+|.....++||+|||+||||.++++++++
T Consensus         1 ~~i~~vg~ny~~h~~~~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~   80 (205)
T TIGR02305         1 GTVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEE   80 (205)
T ss_pred             CcEEEEeCcHHHHHHHhcccccccccCCCCCCCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHH
Confidence            5899999999999999985        46889999999999999999999999987889999999999999999999999


Q ss_pred             HhhhhceEEEEeecchHhHHh
Q 033723           88 AMDYVGGYAVALDMTAREIQS  108 (112)
Q Consensus        88 A~~~I~Gyti~nD~TaRd~q~  108 (112)
                      |++||+||+++||+|+|+.+.
T Consensus        81 a~~~v~g~~~~~dit~~~~~~  101 (205)
T TIGR02305        81 ALDYVAGYALVNDVSLPEDSY  101 (205)
T ss_pred             HHHhhheeEEeeeeehhhhhc
Confidence            999999999999999998754

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>PRK12764 hypothetical protein; Provisional

Probab=99.95  E-value=1.4e-28  Score=202.50  Aligned_cols=103  Identities=35%  Similarity=0.504  Sum_probs=95.8

Q ss_pred             HHhhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723            7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (112)
Q Consensus         7 ~~~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~   86 (112)
                      .+.+....|+||+|+|+||++|++|++. .|+.|.+|+|+++++++++++|.+|.....+|||+||++||||.+++++++
T Consensus        13 ~~~~~~~~p~kIi~vg~Ny~~ha~e~~~-~p~~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~e   91 (500)
T PRK12764         13 VVAPLLARPGKVIAVHLNYPSRAAQRGR-TPAQPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPE   91 (500)
T ss_pred             cccCCCCCCCcEEEECCCCHHHHHHhCC-CCCCCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHH
Confidence            4456667789999999999999999986 488999999999999999999999988888999999999999999999999


Q ss_pred             cHhhhhceEEEEeecchHhHHhhh
Q 033723           87 TAMDYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        87 ~A~~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      +|++||+|||++||+|+||+|...
T Consensus        92 ea~~~I~Gyt~~nDvt~rD~~~~d  115 (500)
T PRK12764         92 DAWSHVAAVTAANDLGVYDLRYAD  115 (500)
T ss_pred             HHHhhheEEEEecceeeehhhhhh
Confidence            999999999999999999999754

>PLN02856 fumarylacetoacetase

Probab=99.93  E-value=4e-26  Score=184.59  Aligned_cols=94  Identities=26%  Similarity=0.357  Sum_probs=84.9

Q ss_pred             CCCcEEEEccCcHHHHHHhCCC--------CCCC---CEEEecCCCCcccCCCcEeeCCC---------------CCCce
Q 033723           14 AGTKIVAVGRNYAAHAKELGNA--------VPKE---PVLFLKPTSSYLGNGGTIEVPHP---------------LDSLH   67 (112)
Q Consensus        14 ~~~ki~~vg~NY~~h~~e~~~~--------~p~~---P~~f~K~~~a~~g~~~~i~~P~~---------------~~~ld   67 (112)
                      +++++.|. .||.+|+.+.|..        .|..   |++|.|+++|++++|++|.+|..               +..+|
T Consensus       126 ~~~~~~df-~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lD  204 (424)
T PLN02856        126 VIGDYTDF-FSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLD  204 (424)
T ss_pred             ccceEEEE-ecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceE
Confidence            46888898 9999999998642        1333   99999999999999999999973               67899


Q ss_pred             eceeEEEEECCC---CCCCChhcHhhhhceEEEEeecchHhHHh
Q 033723           68 HEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQS  108 (112)
Q Consensus        68 ~E~ELavVIGk~---~~~v~~~~A~~~I~Gyti~nD~TaRd~q~  108 (112)
                      ||+||++||||.   |++|++++|++||+|||++||||+||+|.
T Consensus       205 yE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~  248 (424)
T PLN02856        205 FELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQK  248 (424)
T ss_pred             EEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhh
Confidence            999999999997   89999999999999999999999999996

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I

Probab=99.91  E-value=2.2e-24  Score=160.07  Aligned_cols=94  Identities=46%  Similarity=0.734  Sum_probs=85.2

Q ss_pred             cEEEEccCcHHHHHHhCC---CCCC-----CCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCC-Chhc
Q 033723           17 KIVAVGRNYAAHAKELGN---AVPK-----EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV-PETT   87 (112)
Q Consensus        17 ki~~vg~NY~~h~~e~~~---~~p~-----~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v-~~~~   87 (112)
                      ||+|+|.||.+|+++++.   +.|.     .|.+|.|+++++.++|++|.+|..+..++||+||+++|||.++++ ++++
T Consensus         1 ~v~~~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~e   80 (218)
T PF01557_consen    1 KVVGVGLNYTSHAEEAGAGDVDEPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEE   80 (218)
T ss_dssp             EEEEEESEBHHHHHHTTTTCSSTTSEECECSGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHH
T ss_pred             CEEEEeEchHHHHHHhCcCCCCCCccccccCCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHH
Confidence            799999999999999873   3343     889999999999999999999999889999999999999999999 9999


Q ss_pred             HhhhhceEEEEeecchHhHHhhh
Q 033723           88 AMDYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        88 A~~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      |++||+||+++||+|+|++|...
T Consensus        81 a~~~i~g~~~~~d~~~r~~~~~~  103 (218)
T PF01557_consen   81 ALDAIAGYTPANDVTARDLQWRE  103 (218)
T ss_dssp             HGGGEEEEEEEEEEEEHHHHHHH
T ss_pred             HHHHhhEEeeecccchhhhhhhh
Confidence            99999999999999999998653

; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....

>TIGR01266 fum_ac_acetase fumarylacetoacetase

Probab=99.90  E-value=3.3e-24  Score=173.11  Aligned_cols=95  Identities=24%  Similarity=0.293  Sum_probs=84.1

Q ss_pred             CCcE--EEEccCcHHHHHHhCCC-------C----CCCCEEEecCCCCcccCCCcEeeCCC--------------CCCce
Q 033723           15 GTKI--VAVGRNYAAHAKELGNA-------V----PKEPVLFLKPTSSYLGNGGTIEVPHP--------------LDSLH   67 (112)
Q Consensus        15 ~~ki--~~vg~NY~~h~~e~~~~-------~----p~~P~~f~K~~~a~~g~~~~i~~P~~--------------~~~ld   67 (112)
                      |-+|  |....+|.+|+.+.|.-       .    ...|++|+|+++|++++|++|.+|..              +..+|
T Consensus       117 P~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD  196 (415)
T TIGR01266       117 PAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLD  196 (415)
T ss_pred             CccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceE
Confidence            4555  78899999999987521       1    24699999999999999999999974              67899


Q ss_pred             eceeEEEEECCC---CCCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723           68 HEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        68 ~E~ELavVIGk~---~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      ||+||++||||.   |++|++++|++||+|||++||||+||+|..
T Consensus       197 ~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDiQ~w  241 (415)
T TIGR01266       197 MELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDIQAW  241 (415)
T ss_pred             EEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhhhhh
Confidence            999999999997   999999999999999999999999999963

This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.8e-12  Score=101.15  Aligned_cols=70  Identities=29%  Similarity=0.403  Sum_probs=62.9

Q ss_pred             CCEEEecCCCCcccCCCcEeeCC--------------CCCCceeceeEEEEECCC----CCCCChhcHhhhhceEEEEee
Q 033723           39 EPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK----ARDVPETTAMDYVGGYAVALD  100 (112)
Q Consensus        39 ~P~~f~K~~~a~~g~~~~i~~P~--------------~~~~ld~E~ELavVIGk~----~~~v~~~~A~~~I~Gyti~nD  100 (112)
                      -|+-|....++++-.|.||..|-              ....+|+|.|+|+.+|-.    |..|+.++|+++|+|+++.||
T Consensus       155 LPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMND  234 (420)
T KOG2843|consen  155 LPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMND  234 (420)
T ss_pred             ccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecc
Confidence            59999999999999999999883              146689999999999954    567899999999999999999


Q ss_pred             cchHhHHh
Q 033723          101 MTAREIQS  108 (112)
Q Consensus       101 ~TaRd~q~  108 (112)
                      ||+||+|+
T Consensus       235 WSARDIQk  242 (420)
T KOG2843|consen  235 WSARDIQK  242 (420)
T ss_pred             cchhhccc
Confidence            99999996

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase

Probab=98.49  E-value=5.9e-07  Score=68.70  Aligned_cols=87  Identities=17%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcHh---hhhc
Q 033723           19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAM---DYVG   93 (112)
Q Consensus        19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A~---~~I~   93 (112)
                      |-+|+.-+.-.+.|+..   .|++=.-..+.+..++.++..+... .+++|+||++||||++  +++++++++   ++|+
T Consensus        55 ~K~g~ts~~~~~~~gv~---~P~~g~l~~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~  130 (255)
T TIGR03220        55 KKIGVTSKAVMNMLGVY---QPDFGYLLDGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVM  130 (255)
T ss_pred             EEEecCCHHHHHHhCCC---CCcEEEeeccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhhee
Confidence            44666655555556654   4544333445666778888888764 7999999999999996  689999765   5677


Q ss_pred             eEEEEeecchHhHHhh
Q 033723           94 GYAVALDMTAREIQSS  109 (112)
Q Consensus        94 Gyti~nD~TaRd~q~~  109 (112)
                      ++.-.+|.+.||||..
T Consensus       131 ~~~El~D~r~~~~~~~  146 (255)
T TIGR03220       131 PCFEIVDSRIRDWKIK  146 (255)
T ss_pred             eeEEEcccccccCCCC
Confidence            7777889999999753

Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]

Probab=97.90  E-value=1.1e-05  Score=63.70  Aligned_cols=61  Identities=20%  Similarity=0.343  Sum_probs=52.3

Q ss_pred             CCEEEec-CCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723           39 EPVLFLK-PTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        39 ~P~~f~K-~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      .+-+|+| .+.+-+|+|+.|-+.+.+..-.-|.|+++++...++          |-|||++||+++||+..+
T Consensus       168 daEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlRD~Egr  229 (379)
T COG3970         168 DAEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLRDFEGR  229 (379)
T ss_pred             ChhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCcccccccccc
Confidence            3566777 567779999999887777778899999999999998          899999999999998653

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional

Probab=97.73  E-value=0.00015  Score=55.59  Aligned_cols=85  Identities=20%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCC--CCChhcHhhhhceEE
Q 033723           19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGYA   96 (112)
Q Consensus        19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~v~~~~A~~~I~Gyt   96 (112)
                      |.+|++.+...+.++...|-...+|.   +.+..++..+.++.. .....|+||++++||+..  +++++++.++|.++.
T Consensus        59 ~K~G~ts~~~~~~~gv~~P~~g~l~~---~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v~  134 (262)
T PRK11342         59 RKVGLTHPKVQQQLGVDQPDFGTLFA---DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVL  134 (262)
T ss_pred             EEecCCCHHHHHHhCCCCCCcccccc---hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceEe
Confidence            78999999988888887666666665   456677777776554 357889999999999875  689999999999999


Q ss_pred             EEeecchHhHH
Q 033723           97 VALDMTAREIQ  107 (112)
Q Consensus        97 i~nD~TaRd~q  107 (112)
                      .+.++-.+.++
T Consensus       135 paiEivdsr~~  145 (262)
T PRK11342        135 PALEVVGSRIR  145 (262)
T ss_pred             eeEEecCCccc
Confidence            99888765554

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase

Probab=97.49  E-value=0.00072  Score=52.14  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=62.6

Q ss_pred             EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcHhhhhceEE
Q 033723           19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYA   96 (112)
Q Consensus        19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A~~~I~Gyt   96 (112)
                      |-+|+.-..--+.++..   .|++=.-..+.+...+..+..+ ...+.-+|+||++++|++.  .+.+.++++++|.++.
T Consensus        60 ~KvG~ts~a~q~~~gv~---~P~~g~l~~~~~~~~g~~~~~~-~~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~  135 (267)
T TIGR02312        60 HKIGLTSRAMQQASNID---EPDYGVLLDDMFFEDGSTIPAD-RFIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVV  135 (267)
T ss_pred             EEEecCCHHHHHHcCCC---CCeeEEecCccccCCCCeeccc-cccccccceEEEEEECCCCCCCCCCHHHHHHHhheEE
Confidence            44555554444445543   4554444456667777777764 3345789999999999987  4789999999999999


Q ss_pred             EEeecchHhHHh
Q 033723           97 VALDMTAREIQS  108 (112)
Q Consensus        97 i~nD~TaRd~q~  108 (112)
                      .+.++..+.++.
T Consensus       136 paiEi~dsr~~~  147 (267)
T TIGR02312       136 PALEIIDARIER  147 (267)
T ss_pred             eeEEEeeccccc
Confidence            999999888764

This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.36  E-value=0.017  Score=45.06  Aligned_cols=59  Identities=24%  Similarity=0.378  Sum_probs=46.9

Q ss_pred             CCEEEec-CCCCcccCCCcEeeCCCCCCceeceeEE--EEECCCCCCCChhcHhhhhceEEEEeecchHh
Q 033723           39 EPVLFLK-PTSSYLGNGGTIEVPHPLDSLHHEVELA--VVIGQKARDVPETTAMDYVGGYAVALDMTARE  105 (112)
Q Consensus        39 ~P~~f~K-~~~a~~g~~~~i~~P~~~~~ld~E~ELa--vVIGk~~~~v~~~~A~~~I~Gyti~nD~TaRd  105 (112)
                      +|-+|.| ..+.++.+|.+++.|..+..=--|.||+  .+||.++.-        |-.||+++|.+|.--
T Consensus       140 QPEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSDHv  201 (333)
T COG3802         140 QPEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSDHV  201 (333)
T ss_pred             CcceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhhhh
Confidence            6877777 5567789999999998876666788886  678888764        678999999998643

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.26  E-value=0.074  Score=41.33  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=58.9

Q ss_pred             EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCC--CCChhcHhhhhceEE
Q 033723           19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGYA   96 (112)
Q Consensus        19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~v~~~~A~~~I~Gyt   96 (112)
                      +-+|+.-+.+-+.++...|..=.+|-   ......+.+|+.+.... ..+|+||+++++|+..  +++..|+++|+.-+.
T Consensus        60 ~Kvglts~a~q~~~~v~epd~G~lfd---~m~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~  135 (264)
T COG3971          60 HKVGLTSPAMQQQLGVDEPDYGTLFD---DMAFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVL  135 (264)
T ss_pred             eeeccCCHHHHHHcCCCCcchhhhhH---hHHhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhh
Confidence            34688888888888876555444443   33556677777766543 4999999999999855  899999999998777


Q ss_pred             EEeec
Q 033723           97 VALDM  101 (112)
Q Consensus        97 i~nD~  101 (112)
                      .+..+
T Consensus       136 palEl  140 (264)
T COG3971         136 PALEL  140 (264)
T ss_pred             hhhhh
Confidence            66655

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase

Probab=91.38  E-value=2.1  Score=32.93  Aligned_cols=64  Identities=16%  Similarity=0.089  Sum_probs=44.4

Q ss_pred             CCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcHhhhhceEEEEeecch
Q 033723           39 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYAVALDMTA  103 (112)
Q Consensus        39 ~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A~~~I~Gyti~nD~Ta  103 (112)
                      .|++=.-..+.+...+..+..... .+.-.|+|+++++|++.  .+.+.++..++|..+..+..+-.
T Consensus        80 ~P~~g~l~~~~~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEivd  145 (263)
T TIGR03218        80 TPVFGFLVDYFSVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAVEVID  145 (263)
T ss_pred             CCeeeeecccccccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeEEecc
Confidence            444333333444555666655433 34689999999999976  56788999999998888877643

Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1saw_A	225	X-Ray Structure Of Homo Sapiens Protein Flj36880 Le		2e-29
1nr9_A	223	Crystal Structure Of Escherichia Coli 1262 (Apc5008		4e-20
3rr6_A	265	Structure Of A Putative Uncharacterized Protein Fro		8e-20
3v77_A	224	Crystal Structure Of A Putative Fumarylacetoacetate		4e-19
2dfu_A	264	Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1		4e-18
3s52_A	221	Crystal Structure Of A Putative Fumarylacetoacetate		8e-18
1nkq_A	259	Crystal Structure Of Yeast Ynq8, A Fumarylacetoacet		1e-17
1wzo_A	246	Crystal Structure Of The Hpce From Thermus Thermoph		5e-17
1i7o_A	429	Crystal Structure Of Hpce Length = 429		8e-17
3qdf_A	268	Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-D		4e-15
4dbf_A	288	Crystal Structures Of Cg1458 Length = 288		3e-10
3r6o_A	329	Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-		1e-09

>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880 Length = 225

Iteration: 1
 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 7   ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 66
Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
            +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct: 67  RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 114

>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008), Putative Isomerase Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 60/96 (62%)
Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +K+V VG NYA H KE G+AVP+EPVLF+KP ++       + +P    S+HHEVELAV+
Sbjct: 19  SKVVCVGSNYAKHIKEXGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVL 78
Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           IG   R   E      + GY VALD+T R++Q   K
Sbjct: 79  IGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKXK 114

>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 65/94 (69%)
Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +K+VA+G+NYAAHA E+G   P+ PV+F+KP +S +G G  I++P     +HHE ELA+V
Sbjct: 65  SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIV 124
Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSS 109
           IG+  +DVP   A + + GY +  D++AR+ Q +
Sbjct: 125 IGRPCKDVPAARAAENILGYTIGNDVSARDHQRA 158

>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA Length = 224

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 58/95 (61%)
Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           KIV VGRNYAAHAKEL N +P  P+LF+KP SS +  G    +P    S+HHE+E+A++I
Sbjct: 17  KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77  GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           G+           + + G  + LD+T R++Q   K
Sbjct: 77  GKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLK 111

>pdb|2DFU|A Chain A, Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 68/107 (63%), Gaps = 13/107 (12%)
Query: 16  TKIVAVGRNYAAHAKELGNA----VPKEPVLFLKPTSSYLGNG------GTIE-VPHPL- 63
           TKIV VGRNY  H +E+G+     +PKEP LFLK  ++    G      GT E VP+P  
Sbjct: 48  TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 64  -DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSS 109
            + LH+E ELAVV+G + R VP   A+D+V GY VA+D+TAR++Q  
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQKK 154

>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate Hydrolase Family Protein From Yersinia Pestis Co92 Length = 221

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 56/96 (58%)
Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
            K+V VG NYA H KE G+    EPVLF+KP ++       + +P    S+HHE+ELAV+
Sbjct: 20  NKVVCVGSNYAEHIKEXGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVL 79
Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           IG   +   E      + GY VALD+T RE+Q+  K
Sbjct: 80  IGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFK 115

>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate Hydrolase Family Protein Length = 259

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 31/129 (24%)
Query: 12  IQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL-------------------- 51
           ++A  KI+ +GRNYAAH KEL N+ PK+P  FLKPTSS +                    
Sbjct: 6   LKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNG 65
Query: 52  -----GNGGTIEVPHPLDSLHHEVELAVVIGQKARDV----PETTAMDYVGGYAVALDMT 102
                 N G I +P  +  +HHE+ELA+++ +   +V    PE    D + G A+ALD+T
Sbjct: 66  LNEDGTNPGPIFIPRGV-KVHHEIELALIVSKHLSNVTKXKPE-EVYDSISGVALALDLT 123
Query: 103 AREIQSSAK 111
           AR +Q  AK
Sbjct: 124 ARNVQDEAK 132

>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus Hb8 Length = 246

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%)
Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           KI+ V  NYA HA+ELG + P+EP LF KP +S L + G +  P     +H+EVELAVV+
Sbjct: 45  KILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVV 104
Query: 77  GQKARDVPETTAMDYVGGYAVALDMTARE 105
           G+  + V    A+DYV GY +A D+ AR+
Sbjct: 105 GRPMKRVRAKDALDYVLGYTIANDLVARD 133

>pdb|1I7O|A Chain A, Crystal Structure Of Hpce Length = 429

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 57/88 (64%)
Query: 18  IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
           + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVIG
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284
Query: 78  QKARDVPETTAMDYVGGYAVALDMTARE 105
           ++AR+V E  AMDYV GY V  D   R+
Sbjct: 285 KQARNVSEADAMDYVAGYTVCNDYAIRD 312

>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Mycobacterium Marinum Length = 268

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 16  TKIVAVGRNYAAHAKELGN---AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVEL 72
           +K+V VG+NY  H  E+G      P +PV+FLKP ++ +G    I +P     +H E EL
Sbjct: 65  SKVVCVGKNYTDHIAEMGGQTGPTPADPVIFLKPNTAIVGPNVPIRLPANASPVHFEGEL 124
Query: 73  AVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSS 109
           A+VIG+  +DV    A+D + GY +  D++AR+ Q S
Sbjct: 125 AIVIGRPCKDVSAAQAVDNILGYTIGNDVSARDQQKS 161

>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458 Length = 288

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 16  TKIVAVGRNYAAHAKEL--GNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
           +K+VA+GRNYA H  E+   +A    P LFLKP ++  G    I +P     +  E ELA
Sbjct: 81  SKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELA 140
Query: 74  VVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           VVIG+  ++V        V G+ +  D+++R++Q
Sbjct: 141 VVIGKPCKNVKADDWKSVVLGFTIINDVSSRDLQ 174

>pdb|3R6O|A Chain A, Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From Mycobacterium Abscessus Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 17  KIVAVGRNYAAHAKELGNAVPK--EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
           +++A+G NY  H+ +  + +PK  +PV+F+K  +S  G    +  P    +L +E+E+AV
Sbjct: 105 QVIALGFNYPTHS-DTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAV 163
Query: 75  VIGQKARDVPETTAMDYVGGYAVALDMTAREI 106
           VIG+    +  + A+ +V GY +A D+TAR++
Sbjct: 164 VIGKPGYRIERSQAIKHVAGYMLANDITARDV 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	8e-58
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	1e-55
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	3e-55
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	2e-47
1wzo_A	246	HPCE; structural genomics, riken structural genomi	1e-45
3rr6_A	265	Putative uncharacterized protein; structural genom	3e-45
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	8e-44
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	2e-38
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	2e-40
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	4e-35
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	2e-24
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	1e-22
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	6e-10

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225

 Score =  176 bits (449), Expect = 8e-58
 Identities = 57/111 (51%), Positives = 76/111 (68%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           +  AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P
Sbjct: 4   IMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMP 63

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
               +LHHE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct: 64  AYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 114

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221

 Score =  170 bits (432), Expect = 3e-55
 Identities = 41/95 (43%), Positives = 57/95 (60%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           K+V VG NYA H KE+G+    EPVLF+KP ++       + +P    S+HHE+ELAV+I
Sbjct: 21  KVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLI 80

Query: 77  GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           G   +   E      + GY VALD+T RE+Q+  K
Sbjct: 81  GTPLKQASEDRVARAIAGYGVALDLTLRELQAGFK 115

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259

 Score =  151 bits (384), Expect = 2e-47
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 27/130 (20%)

Query: 9   QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDS--- 65
              ++A  KI+ +GRNYAAH KEL N+ PK+P  FLKPTSS +    +  V     +   
Sbjct: 3   YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 62

Query: 66  ---------------------LHHEVELAVVIGQKARDVPETT---AMDYVGGYAVALDM 101
                                +HHE+ELA+++ +   +V +       D + G A+ALD+
Sbjct: 63  FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDL 122

Query: 102 TAREIQSSAK 111
           TAR +Q  AK
Sbjct: 123 TARNVQDEAK 132

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246

 Score =  146 bits (371), Expect = 1e-45
 Identities = 42/92 (45%), Positives = 58/92 (63%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
            KI+ V  NYA HA+ELG + P+EP LF KP +S L + G +  P     +H+EVELAVV
Sbjct: 44  GKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVV 103

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           +G+  + V    A+DYV GY +A D+ AR+  
Sbjct: 104 VGRPMKRVRAKDALDYVLGYTIANDLVARDYV 135

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265

 Score =  146 bits (370), Expect = 3e-45
 Identities = 42/94 (44%), Positives = 64/94 (68%)

Query: 14  AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
             +K+VA+G+NYAAHA E+G   P+ PV+F+KP +S +G G  I++P     +HHE ELA
Sbjct: 63  LASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELA 122

Query: 74  VVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           +VIG+  +DVP   A + + GY +  D++AR+ Q
Sbjct: 123 IVIGRPCKDVPAARAAENILGYTIGNDVSARDHQ 156

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score =  146 bits (370), Expect = 8e-44
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
            + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVI
Sbjct: 224 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 283

Query: 77  GQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           G++AR+V E  AMDYV GY V  D   R+  
Sbjct: 284 GKQARNVSEADAMDYVAGYTVCNDYAIRDYL 314

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score =  132 bits (334), Expect = 2e-38
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 16  TKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
             I AV  N+ +       A         PK  V F+KP ++ +G G  I  P   + + 
Sbjct: 3   GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFP-QGEKVL 61

Query: 68  HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
               +A+++G+ A  V E  A +Y+ GYA+A D++  E  
Sbjct: 62  SGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES 101

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264

 Score =  133 bits (337), Expect = 2e-40
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 13/105 (12%)

Query: 16  TKIVAVGRNYAAHAKELGN----AVPKEPVLFLKPTSSYLGNGGTI-------EVPHPLD 64
           TKIV VGRNY  H +E+G+     +PKEP LFLK  ++    G           VP+P  
Sbjct: 48  TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107

Query: 65  S--LHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           +  LH+E ELAVV+G + R VP   A+D+V GY VA+D+TAR++Q
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQ 152

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329

 Score =  121 bits (306), Expect = 4e-35
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 17  KIVAVGRNYAAHAK-ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +++A+G NY  H+  +       +PV+F+K  +S  G    +  P    +L +E+E+AVV
Sbjct: 105 QVIALGFNYPTHSDTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVV 164

Query: 76  IGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
           IG+    +  + A+ +V GY +A D+TAR++ 
Sbjct: 165 IGKPGYRIERSQAIKHVAGYMLANDITARDVA 196

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 26/107 (24%)

Query: 17  KIVAVGRNYAAHAKELGN---------------AVPKEPVLFLKPT-SSYLGNGGTIEVP 60
           ++   G +Y    +                        P +F K T +  +G+G  I V 
Sbjct: 75  EVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVR 134

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
              +    E ELAVV+    +          + GY +  D++AR+++
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSARDLE 171

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359

 Score = 89.2 bits (221), Expect = 1e-22
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 17  KIVAVGRNYAAHAK--------ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
              A G  Y  H +        E+  +   +P+++   + S+LG    I +      +  
Sbjct: 100 FQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDM 159

Query: 69  EVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQS 108
           E E AV++           A   +    +  D++ R +  
Sbjct: 160 EGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLIP 199

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421

 Score = 54.0 bits (129), Expect = 6e-10
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 21  VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
           VG  +      L       PV +    SS + +G  I  P                   L
Sbjct: 139 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 198

Query: 67  HHEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQ 107
             E+E+A  +G        +P + A +++ G  +  D +AR+IQ
Sbjct: 199 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
4dbf_A	288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A	265	Putative uncharacterized protein; structural genom	100.0
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	100.0
1wzo_A	246	HPCE; structural genomics, riken structural genomi	99.98
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	99.97
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	99.97
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	99.97
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.97
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.96
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	99.93
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	99.9
2wqt_A	270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	99.84
2eb4_A	267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	99.83

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A

Probab=100.00  E-value=2.8e-36  Score=232.84  Aligned_cols=95  Identities=36%  Similarity=0.556  Sum_probs=84.1

Q ss_pred             CCcEEEEccCcHHHHHHhC--CCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhh
Q 033723           15 GTKIVAVGRNYAAHAKELG--NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYV   92 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~--~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I   92 (112)
                      |+||||+|+||++|++|++  .+.|+.|++|+|+++++++++++|.+|..+.++|||+|||+||||.+++|++++|++||
T Consensus        80 p~ki~cvG~NY~~H~~E~~~~~~~p~~P~~F~K~~~sv~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~~~A~~~I  159 (288)
T 4dbf_A           80 PSKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELAVVIGKPCKNVKADDWKSVV  159 (288)
T ss_dssp             CSCEEEEESCBCC-----------CCCCEEEEECGGGEECTTCCEEECTTCCSEECCEEEEEEECSCBSSCCGGGGGGGE
T ss_pred             CceEEEEeccHHHHHHHhccCCCCCCCCEEEEeCcceeeCCCCceECCCCCCceeEEEEEEEEECCCcCCCCHHHHhhhe
Confidence            5999999999999999999  78899999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecchHhHHhh
Q 033723           93 GGYAVALDMTAREIQSS  109 (112)
Q Consensus        93 ~Gyti~nD~TaRd~q~~  109 (112)
                      +|||++||+|+||+|.+
T Consensus       160 ~Gytv~nDvsaRd~Q~~  176 (288)
T 4dbf_A          160 LGFTIINDVSSRDLQFA  176 (288)
T ss_dssp             EEEEEEECCEEHHHHHH
T ss_pred             eEEEEEEEeEhHHhhhc
Confidence            99999999999999975

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A

Probab=100.00  E-value=4.3e-36  Score=229.52  Aligned_cols=95  Identities=44%  Similarity=0.805  Sum_probs=92.6

Q ss_pred             CCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhce
Q 033723           15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG   94 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~G   94 (112)
                      |+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+.++|||+|||+||||.+++|++++|++||+|
T Consensus        64 p~ki~cvG~NY~~h~~e~g~~~P~~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~~~A~~~V~G  143 (265)
T 3rr6_A           64 ASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILG  143 (265)
T ss_dssp             CSCEEEESCCBCSSGGGTTSSCCCCCCEEEECGGGEECTTSCEECCTTCSCEEECEEEEEEECSCBSSCCGGGTGGGEEE
T ss_pred             CceEEEEEcCHHHHHHHhCCCCCCCCEEEEeCcceEeCCCCceECCCCCCceeEEEEEEEEECCcCCCCCHHHHHhheeE
Confidence            59999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             EEEEeecchHhHHhh
Q 033723           95 YAVALDMTAREIQSS  109 (112)
Q Consensus        95 yti~nD~TaRd~q~~  109 (112)
                      ||++||+|+||+|.+
T Consensus       144 yt~~nDvsaRd~q~~  158 (265)
T 3rr6_A          144 YTIGNDVSARDHQRA  158 (265)
T ss_dssp             EEEEECCEEHHHHHH
T ss_pred             EEEEEEeEhHHhhhc
Confidence            999999999999974

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A

Probab=100.00  E-value=7.7e-36  Score=222.52  Aligned_cols=101  Identities=41%  Similarity=0.665  Sum_probs=96.0

Q ss_pred             hhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHh
Q 033723           10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAM   89 (112)
Q Consensus        10 ~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~   89 (112)
                      +...+++||||+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+.++|||+|||+||||+++++++++|+
T Consensus        14 ~~~~p~~ki~~vG~Ny~~h~~e~g~~~p~~P~~F~K~~~~~~~~g~~i~~p~~~~~~d~E~ELavvig~~~~~v~~~~A~   93 (221)
T 3s52_A           14 LLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVA   93 (221)
T ss_dssp             BCCSCCCEEEEEESCBHHHHHHTTCCCCSSCEEEEEEGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHH
T ss_pred             cccCCCCcEEEEeCCHHHHHHHhCCCCCCceEEEEcCCceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHH
Confidence            44456799999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             hhhceEEEEeecchHhHHhhh
Q 033723           90 DYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        90 ~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      +||+|||++||+|+||+|.++
T Consensus        94 ~~I~Gy~~~nDvs~Rd~q~~~  114 (221)
T 3s52_A           94 RAIAGYGVALDLTLRELQAGF  114 (221)
T ss_dssp             HHEEEEEEEECCEEHHHHHHH
T ss_pred             hhheEEEEEEEeEHHHHhhhh
Confidence            999999999999999999864

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}

Probab=100.00  E-value=8.3e-35  Score=228.05  Aligned_cols=101  Identities=32%  Similarity=0.569  Sum_probs=87.3

Q ss_pred             HhhhccCCCcEEEEccCcHHHHHHhCCCCCC--CCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCCh
Q 033723            8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPK--EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPE   85 (112)
Q Consensus         8 ~~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~--~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~   85 (112)
                      +.+++++|+||||+|+||++|++ ++.+.|+  .|++|+|+++++++++++|.+|..+..+|||+||||||||.+++|++
T Consensus        96 llaPv~~p~kI~cvG~NY~~H~~-~g~~~P~~~~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~  174 (329)
T 3r6o_A           96 LGAPIPEPGQVIALGFNYPTHSD-TDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVVIGKPGYRIER  174 (329)
T ss_dssp             BCCSSSSCSCEEEEESCSTTC------------CCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSCCG
T ss_pred             EcCCCCCCCeEEEEcccHHHHHH-hCCCCCCccCCEEEEcccceEECCCCceECCCCCCCccEEEEEEEEECCCCCCCCH
Confidence            34566778999999999999999 8888888  99999999999999999999999999999999999999999999999


Q ss_pred             hcHhhhhceEEEEeecchHhHHhh
Q 033723           86 TTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        86 ~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      ++|++||+|||++||+|+||+|++
T Consensus       175 e~A~~~I~Gytv~NDvSaRd~q~~  198 (329)
T 3r6o_A          175 SQAIKHVAGYMLANDITARDVALP  198 (329)
T ss_dssp             GGGGGGEEEEEEEECCEEHHHHCT
T ss_pred             HHHHhhheEEEEEEEeEHHHHhhh
Confidence            999999999999999999999874

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.4e-33  Score=221.89  Aligned_cols=100  Identities=17%  Similarity=0.232  Sum_probs=91.1

Q ss_pred             hhccCCCcEEEEccCcHHHHHHh----CCCCCC----CCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCC
Q 033723           10 KLIQAGTKIVAVGRNYAAHAKEL----GNAVPK----EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR   81 (112)
Q Consensus        10 ~~l~~~~ki~~vg~NY~~h~~e~----~~~~p~----~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~   81 (112)
                      .+++++ ++||+|.||++|++|+    +.+.|+    .|++|+|+++++++++++|.+|..+..+|||+||||||||.++
T Consensus        94 ~Pv~~~-~~~~~g~NY~~Ha~e~~~~~g~~~p~~~~~~P~~F~k~~ssv~g~~~~I~~P~~s~~lD~E~ELavVIGk~~~  172 (359)
T 3lzk_A           94 SPLPRA-FQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDMEGEAAVIVDDVPM  172 (359)
T ss_dssp             CSSSSC-SCEEEECCCHHHHHHHHHHTTCCCCGGGGTSCCEEEECCSSCBCTTSCEEESCTTSCEECCEEEEEEECCBCT
T ss_pred             CCCCCC-CEEEEEcCHHHHHHHHHHhcCCCCCCcccCccEEEECCCceEECCCCCEECCCCCCCeeEEEEEEEEECCCCC
Confidence            334444 4699999999999996    566777    8999999999999999999999999999999999999999999


Q ss_pred             CCChhcHhhhhceEEEEeecchHhHHhhh
Q 033723           82 DVPETTAMDYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        82 ~v~~~~A~~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      +|++++|++||+|||++||||+||+|...
T Consensus       173 ~v~~e~A~~~I~Gytl~ND~SaRD~Q~~~  201 (359)
T 3lzk_A          173 GATLDEAKAAIRLVMLVNDVSLRGLIPGE  201 (359)
T ss_dssp             TCCHHHHHHTEEEEEEEECCEETTTHHHH
T ss_pred             CCCHHHHHhhhcEEEEEEeccHHHhhhhh
Confidence            99999999999999999999999999753

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}

Probab=99.98  E-value=6.7e-33  Score=208.99  Aligned_cols=97  Identities=43%  Similarity=0.671  Sum_probs=85.8

Q ss_pred             CCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhc
Q 033723           14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVG   93 (112)
Q Consensus        14 ~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~   93 (112)
                      +|+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.++++++++|++||+
T Consensus        42 ~p~~i~~vG~ny~~h~~e~g~~~P~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a~~~i~  121 (246)
T 1wzo_A           42 TPGKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVVGRPMKRVRAKDALDYVL  121 (246)
T ss_dssp             CCCCEEEEESCBC------CCCCCSSCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSCCHHHHGGGEE
T ss_pred             CCCeEEEEEcChHHHHHHhCCCCCCCCEEEEECcccEeCCCCeEECCCCCCceeEEEEEEEEECCCCCCCCHHHHHhhee
Confidence            57999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eEEEEeecchHhHHhhh
Q 033723           94 GYAVALDMTAREIQSSA  110 (112)
Q Consensus        94 Gyti~nD~TaRd~q~~~  110 (112)
                      ||+++||+|+||+|.+.
T Consensus       122 g~~~~nD~s~rd~q~~~  138 (246)
T 1wzo_A          122 GYTIANDLVARDYVTNT  138 (246)
T ss_dssp             EEEEEECCEEGGGC---
T ss_pred             EEEEEEECchHHhcccc
Confidence            99999999999999764

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1

Probab=99.97  E-value=4.7e-33  Score=207.62  Aligned_cols=102  Identities=53%  Similarity=0.908  Sum_probs=86.4

Q ss_pred             hhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcH
Q 033723            9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA   88 (112)
Q Consensus         9 ~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A   88 (112)
                      ...+++++||+|+|+||++|++|+|.+.|+.|++|.|+++++++++++|.+|..+..+|||+||++||||.++++++++|
T Consensus        12 ~~~~~~~~ki~~vG~ny~~h~~e~g~~~P~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a   91 (225)
T 1saw_A           12 SRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAA   91 (225)
T ss_dssp             GGHHHHCCEEEEESCCBC-----------CCCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTG
T ss_pred             hhcccCCCeEEEEEeCcHHHHHHhCCCCCCCCEEEECCcceeeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHH
Confidence            55667899999999999999999999889999999999999999999999999888899999999999999999999999


Q ss_pred             hhhhceEEEEeecchHhHHhhh
Q 033723           89 MDYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        89 ~~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      ++||+||+++||+|+||+|...
T Consensus        92 ~~~i~g~~~~nDvt~r~~q~~~  113 (225)
T 1saw_A           92 MDYVGGYALCLDMTARDVQDEC  113 (225)
T ss_dssp             GGSEEEEEEEECCEEHHHHHHH
T ss_pred             HHhheEEEecccccHHHHhhhh
Confidence            9999999999999999999763

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}

Probab=99.97  E-value=1.3e-32  Score=209.81  Aligned_cols=96  Identities=48%  Similarity=0.752  Sum_probs=83.8

Q ss_pred             CCCcEEEEccCcHHHHHHhC----CCCCCCCEEEecCCCCcccCC---------CcEeeCCCCCCceeceeEEEEECCCC
Q 033723           14 AGTKIVAVGRNYAAHAKELG----NAVPKEPVLFLKPTSSYLGNG---------GTIEVPHPLDSLHHEVELAVVIGQKA   80 (112)
Q Consensus        14 ~~~ki~~vg~NY~~h~~e~~----~~~p~~P~~f~K~~~a~~g~~---------~~i~~P~~~~~ld~E~ELavVIGk~~   80 (112)
                      +|+||+|+|+||++|++|++    .+.|+.|++|.|+++++++++         ++|.+|..+.++|||+||++||||.+
T Consensus        46 ~p~~i~~~g~Ny~~H~~e~~~~~~~~~p~~P~~f~k~~~s~~~~~~~~rp~g~~~~i~~p~~~~~~d~E~ELavvig~~~  125 (264)
T 2dfu_A           46 TPTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRM  125 (264)
T ss_dssp             CCSCEEEECSCBC-------------CCSSCCEEEECGGGEECCCBTTBHHHHSCCEEECSSCSCEECCEEEEEEECSCB
T ss_pred             cCCeEEEEeCcHHHHHHHhcccccCCCCCCCEEEEeccceEEccCCcccccCCCcceecCCCCCceeEEEEEEEEECCCC
Confidence            47999999999999999998    678899999999999999999         99999998888999999999999999


Q ss_pred             CCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723           81 RDVPETTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        81 ~~v~~~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      +++++++|++||+||+++||+|+||+|.+
T Consensus       126 ~~v~~~~a~~~I~gy~~~nDvt~Rd~q~~  154 (264)
T 2dfu_A          126 RHVPPEKALDHVLGYTVAVDITARDVQKK  154 (264)
T ss_dssp             SSCCHHHHGGGEEEEEEEECCEEHHHHHH
T ss_pred             CCCCHHHHHHHhhEeEEEEEeEhhhhhhc
Confidence            99999999999999999999999999975

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1

Probab=99.97  E-value=2.8e-32  Score=207.63  Aligned_cols=98  Identities=45%  Similarity=0.788  Sum_probs=89.0

Q ss_pred             hccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccC------------------------C-CcEeeCCCCCC
Q 033723           11 LIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGN------------------------G-GTIEVPHPLDS   65 (112)
Q Consensus        11 ~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~------------------------~-~~i~~P~~~~~   65 (112)
                      ++++|+||+|+|+||++|++|++.+.|+.|++|+|++++++++                        + ++|.+|... +
T Consensus         5 ~~~~~~ki~cvG~Ny~~H~~E~g~~~p~~P~~F~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~p~~~-~   83 (259)
T 1nkq_A            5 YLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGV-K   83 (259)
T ss_dssp             GGGGCCCEEEECSCBCSSGGGGGC----CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECTTC-C
T ss_pred             cCCCCCEEEEEecCHHHHHHHhCCCCCCCCEEEeeChhhEecccccccccccccccccccccccccCCCCcEEcCCCC-c
Confidence            5678999999999999999999998999999999999999998                        4 999999877 6


Q ss_pred             ceeceeEEEEECCCCCCCCh---hcHhhhhceEEEEeecchHhHHhh
Q 033723           66 LHHEVELAVVIGQKARDVPE---TTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        66 ld~E~ELavVIGk~~~~v~~---~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      +|||+||++||||.++++++   ++|++||+||+++||+|+||+|..
T Consensus        84 ~d~E~ELavvIg~~~~~v~~~t~~ea~~~I~g~~~~nDvt~Rd~q~~  130 (259)
T 1nkq_A           84 VHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDE  130 (259)
T ss_dssp             EEECEEEEEEECSCBCSCCCCCGGGTGGGEEEEEEEECCEEHHHHHH
T ss_pred             ccEEEEEEEEECCCCCCCCcCCHHHHHhhhhEEEEEEeeeHHHhhhh
Confidence            99999999999999999988   999999999999999999999974

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.97  E-value=7.5e-31  Score=211.06  Aligned_cols=93  Identities=30%  Similarity=0.473  Sum_probs=88.5

Q ss_pred             CCcEEEEccCcHHHHHHhCC--------CCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723           15 GTKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~~--------~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~   86 (112)
                      |+||+|+|+||++|++|++.        +.|+.|++|+|+++++++++++|.+|..+. +|||+||++||||.+++++++
T Consensus         2 p~ki~cvg~Ny~~H~~e~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~-~~~E~Elavvig~~~~~v~~~   80 (429)
T 1gtt_A            2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQGEK-VLSGATVALIVGKTATKVREE   80 (429)
T ss_dssp             CSCEEEEESCBHHHHHHHTTGGGSTTTCSCCSSCEEEEECGGGEECTTCCEEECTTCC-EECCEEEEEEECSCBSSCCGG
T ss_pred             CceEEEEechHHHHHHHhhccccccccCCCCCCCEEEEcCcceEEcCCCeeecCCCCC-ccEEEEEEEEECCCCCCCCHH
Confidence            68999999999999999973        568999999999999999999999999887 999999999999999999999


Q ss_pred             cHhhhhceEEEEeecchHhHHh
Q 033723           87 TAMDYVGGYAVALDMTAREIQS  108 (112)
Q Consensus        87 ~A~~~I~Gyti~nD~TaRd~q~  108 (112)
                      +|++||+|||++||+|+||+|.
T Consensus        81 ~a~~~i~gy~~~nD~s~Rd~~~  102 (429)
T 1gtt_A           81 DAAEYIAGYALANDVSLPEESF  102 (429)
T ss_dssp             GGGGGEEEEEEEECCBSCCCCS
T ss_pred             HHHhHhhEEEEEEEeeehhhhc
Confidence            9999999999999999999764

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.96  E-value=6.7e-30  Score=205.56  Aligned_cols=93  Identities=43%  Similarity=0.711  Sum_probs=82.6

Q ss_pred             CcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhceE
Q 033723           16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGY   95 (112)
Q Consensus        16 ~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~Gy   95 (112)
                      +||+|+|+||++|++|++.+.|+.|++|.|+++++++++++|.+|..+.++|||+||++||||.++++++++|++||+||
T Consensus       223 ~~i~~vG~ny~~h~~e~g~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~Elavvig~~~~~v~~~~a~~~i~g~  302 (429)
T 1gtt_A          223 GTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGY  302 (429)
T ss_dssp             SCEEEESSCBCCC--------CCSCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTGGGGEEEE
T ss_pred             CcEEEEEeCHHHHHHHhCCCCCCCCEEEEcCcceEeCCCCeEEcCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEE
Confidence            99999999999999999998999999999999999999999999998889999999999999999999999999999999


Q ss_pred             EEEeecchHhH-Hh
Q 033723           96 AVALDMTAREI-QS  108 (112)
Q Consensus        96 ti~nD~TaRd~-q~  108 (112)
                      +++||+|+||| |.
T Consensus       303 ~~~nD~t~Rd~lq~  316 (429)
T 1gtt_A          303 TVCNDYAIRDYLEN  316 (429)
T ss_dssp             EEEECCEEGGGCCS
T ss_pred             EEEEEcccchhhhh
Confidence            99999999995 64

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A

Probab=99.93  E-value=1.8e-26  Score=177.79  Aligned_cols=85  Identities=25%  Similarity=0.409  Sum_probs=72.9

Q ss_pred             CCcEEEEccCcHH----HHHHhC-----CC------CCCCCEEEecC-CCCcccCCCcEeeCCCCCCceeceeEEEEECC
Q 033723           15 GTKIVAVGRNYAA----HAKELG-----NA------VPKEPVLFLKP-TSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQ   78 (112)
Q Consensus        15 ~~ki~~vg~NY~~----h~~e~~-----~~------~p~~P~~f~K~-~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk   78 (112)
                      |+||+|+|+||++    |++|++     .+      .|+.|.+|+|+ ++++++++++|.+|..+..+|||+|||+||||
T Consensus        73 p~~i~~vG~NY~~~~~~h~~e~~~~~~~~~~~~~~~~~~~P~~F~k~~~~~~~g~~~~i~~p~~~~~~d~E~ELavvIg~  152 (293)
T 2q18_X           73 PPEVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDS  152 (293)
T ss_dssp             CSCEEEEESCBC---------CCCEETTEEHHHHHHHSSSCEEEEEECGGGEECTTSCEEECTTCSCEECCEEEEEEECT
T ss_pred             cceEEEEEechhhhhHHHHHHhccccccccccccccCCCCCEEEECCCCCeEecCCCEEEcCCCCCCcceEEEEEEEECC
Confidence            6999999999998    888887     22      37789999996 69999999999999988889999999999999


Q ss_pred             CCCCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723           79 KARDVPETTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        79 ~~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      .++          |+|||++||+|+||+|.+
T Consensus       153 ~~~----------i~Gyt~~nDvs~Rd~q~~  173 (293)
T 2q18_X          153 NGK----------ILGYTIMDDVSARDLEAE  173 (293)
T ss_dssp             TCC----------EEEEEEEEECEEHHHHHH
T ss_pred             CCc----------CceEEEEEEeEeehhhhh
Confidence            985          999999999999999975

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A

Probab=99.90  E-value=7.3e-24  Score=170.53  Aligned_cols=87  Identities=28%  Similarity=0.369  Sum_probs=77.2

Q ss_pred             cCcHHHHHHhCC--------CCC---CCCEEEecCCCCcccCCCcEeeCCC--------------CCCceeceeEEEEEC
Q 033723           23 RNYAAHAKELGN--------AVP---KEPVLFLKPTSSYLGNGGTIEVPHP--------------LDSLHHEVELAVVIG   77 (112)
Q Consensus        23 ~NY~~h~~e~~~--------~~p---~~P~~f~K~~~a~~g~~~~i~~P~~--------------~~~ld~E~ELavVIG   77 (112)
                      .+|.+|++|++.        ..|   ..|++|+|+++++++++++|.+|..              +..+|||+|||+|||
T Consensus       130 ~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG  209 (421)
T 1hyo_A          130 YSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVG  209 (421)
T ss_dssp             CCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEEC
T ss_pred             echHHHHHHHHhhhccccccCCCCcCCCCEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEEC
Confidence            446788887642        134   5799999999999999999999975              688999999999999


Q ss_pred             CC---CCCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723           78 QK---ARDVPETTAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        78 k~---~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      |.   +++|++++|++||+||+++||||+||+|..
T Consensus       210 ~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaRdiQ~~  244 (421)
T 1hyo_A          210 PGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQW  244 (421)
T ss_dssp             SCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHH
T ss_pred             cccccCCCCCHHHHHHhhcEEEEEEeccHHhhhhh
Confidence            99   899999999999999999999999999974

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A

Probab=99.84  E-value=2e-21  Score=148.03  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=86.4

Q ss_pred             hhccCCCcEEE--EccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCC--CCCCCh
Q 033723           10 KLIQAGTKIVA--VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQK--ARDVPE   85 (112)
Q Consensus        10 ~~l~~~~ki~~--vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~--~~~v~~   85 (112)
                      ..+.+++||+|  +|+||++|.+|+|.+.|..|.+|.|   ++++++++|.+|.. .+++||+||++||||+  ++++++
T Consensus        49 ~~~~~g~~i~g~KiGln~~~h~~e~g~~~P~~~~lf~~---~~~~~g~~i~~p~~-~~~~~E~ELa~vig~~~~g~~vt~  124 (270)
T 2wqt_A           49 HDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFAD---MCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITF  124 (270)
T ss_dssp             HHHHTTCCEEEEEEECCSHHHHHTTTCSSCEEEEEEGG---GEEETTEEECGGGS-SSCEEEEEEEEEESSCBCCTTCCH
T ss_pred             HHhhCCCceEEeEecCCCHHHHHHhCCCCCCEEEEech---heeCCCCeeecCcc-CccceeeEEEEEECCCCCCCCCCH
Confidence            34567899999  9999999999999988999999987   68999999999976 4799999999999999  589999


Q ss_pred             hcHhh---hhceEEEEeecchHhHHh
Q 033723           86 TTAMD---YVGGYAVALDMTAREIQS  108 (112)
Q Consensus        86 ~~A~~---~I~Gyti~nD~TaRd~q~  108 (112)
                      ++|++   ||+||+..||.+.||||.
T Consensus       125 ~~a~~ai~~v~~~~ei~D~~~~~~~~  150 (270)
T 2wqt_A          125 DELYNAIEWVLPALEVVGSRIRDWSI  150 (270)
T ss_dssp             HHHHTTEEEEEEEEEEECCSBGGGCC
T ss_pred             HHHHHhhCeEEEEEEEEcCcccccCC
Confidence            99998   889999999999999983

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A

Probab=99.83  E-value=1.1e-21  Score=149.13  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             hhccCCCcEEE--EccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCC--CCCCCh
Q 033723           10 KLIQAGTKIVA--VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQK--ARDVPE   85 (112)
Q Consensus        10 ~~l~~~~ki~~--vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~--~~~v~~   85 (112)
                      ..+.+++||+|  +|+||++|.+|+|.+.   |.++.++.+++++++++|.+|... +++||+||++||||+  ++++++
T Consensus        49 ~~~~~g~~ivg~KiGl~~~~~~~~~g~~~---P~~~~l~~~~~~~~g~~i~~p~~~-~~~~E~ELa~vig~~l~~~~vt~  124 (267)
T 2eb4_A           49 LKIAEGRTLKGHKIGLTSKAMQASSQISE---PDYGALLDDMFFHDGSDIPTDRFI-VPRIEVELAFVLAKPLRGPNCTL  124 (267)
T ss_dssp             HHHHTTCCEEEEEEECHHHHHCSSCCCCS---CEEEEEEGGGEECTTEEECGGGCS-SCEEEEEEEEEESSCBCCSSCCH
T ss_pred             HHhhCCCceEEEEeccCCHHHHHHhCCCC---CcEEEEechheecCCCeecCCccC-cccEeeEEEEEECCCCCCCCCCH
Confidence            34556899999  9999999999998765   444455567999999999999864 699999999999999  689999


Q ss_pred             hcHhhhhceEEEEeecchHhH
Q 033723           86 TTAMDYVGGYAVALDMTAREI  106 (112)
Q Consensus        86 ~~A~~~I~Gyti~nD~TaRd~  106 (112)
                      ++|++||+||+++||++.|++
T Consensus       125 ~~a~~~v~g~~~~~ei~d~r~  145 (267)
T 2eb4_A          125 FDVYNATDYVIPALELIDARC  145 (267)
T ss_dssp             HHHHHHEEEEEEEEEEECCSB
T ss_pred             HHHHHhhceEEEEEEeecccc
Confidence            999999999999999976443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1sawa_	217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	1e-28
d1nkqa_	257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	6e-25
d1nr9a_	221	d.177.1.1 (A:) Putative isomerase YcgM {Escherichi	3e-24
d1gtta2	216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	2e-23
d1gtta1	213	d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada	9e-15
d1hyoa2	298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	9e-15

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-28
 Identities = 55/104 (52%), Positives = 73/104 (70%)

Query: 8   VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
           + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P    +LH
Sbjct: 3   LSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLH 62

Query: 68  HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           HE+EL VV+G++ R VPE  AMDYVGGYA+ LDMTAR++Q   K
Sbjct: 63  HELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 106

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (229), Expect = 6e-25
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 27/130 (20%)

Query: 9   QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL----- 63
              ++A  KI+ +GRNYAAH KEL N+ PK+P  FLKPTSS +    +  V         
Sbjct: 2   YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 61

Query: 64  -------------------DSLHHEVELAVVIGQKARDVPETT---AMDYVGGYAVALDM 101
                                +HHE+ELA+++ +   +V +       D + G A+ALD+
Sbjct: 62  FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDL 121

Query: 102 TAREIQSSAK 111
           TAR +Q  AK
Sbjct: 122 TARNVQDEAK 131

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Length = 221

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

 Score = 89.9 bits (222), Expect = 3e-24
 Identities = 45/95 (47%), Positives = 60/95 (63%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           K+V VG NYA H KE+G+AVP+EPVLF+KP ++       + +P    S+HHEVELAV+I
Sbjct: 19  KVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLI 78

Query: 77  GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
           G   R   E      + GY VALD+T R++Q   K
Sbjct: 79  GATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMK 113

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

 Score = 87.6 bits (216), Expect = 2e-23
 Identities = 39/86 (45%), Positives = 55/86 (63%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
            + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVI
Sbjct: 11  TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 70

Query: 77  GQKARDVPETTAMDYVGGYAVALDMT 102
           G++AR+V E  AMDYV GY V  D  
Sbjct: 71  GKQARNVSEADAMDYVAGYTVCNDYA 96

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

 Score = 65.0 bits (157), Expect = 9e-15
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 17  KIVAVGRNYAAHAKELGNAV--------PKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
            I AV  N+ +       A         PK  V F+KP ++ +G G  I  P   + +  
Sbjct: 4   TIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLS 62

Query: 69  EVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
              +A+++G+ A  V E  A +Y+ GYA+A D++  E  
Sbjct: 63  GATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES 101

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (160), Expect = 9e-15
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 21  VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
           VG  +      L       PV +    SS + +G  I  P                   L
Sbjct: 19  VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 78

Query: 67  HHEVELAVVIGQ---KARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
             E+E+A  +G        +P + A +++ G  +  D +AR+IQ    
Sbjct: 79  DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEY 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1nr9a_	221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1sawa_	217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta2	216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1gtta1	213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nkqa_	257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1hyoa2	298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	99.94
d1sv6a_	261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	97.35

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-38  Score=234.18  Aligned_cols=102  Identities=44%  Similarity=0.714  Sum_probs=86.0

Q ss_pred             hhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcH
Q 033723            9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA   88 (112)
Q Consensus         9 ~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A   88 (112)
                      +++-.|.+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.++++++++|
T Consensus        11 ~~~~~Pv~kI~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~al~g~~~~I~~p~~~~~ld~E~EL~vvigk~~~~i~~~~A   90 (221)
T d1nr9a_          11 ALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHV   90 (221)
T ss_dssp             CBCSCCCCCEEEESCCBC----------CCCCCEEEECGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHH
T ss_pred             CcccCCCccEEEEeccHHHHHHHHCCCCCCCCEEEEECchhhcCCCcccccccccceeeecccEEEEeccccceeecccc
Confidence            33334559999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             hhhhceEEEEeecchHhHHhhh
Q 033723           89 MDYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        89 ~~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      ++||+|||++||+|+||+|.++
T Consensus        91 ~~~I~Gyti~ND~T~Rd~q~~~  112 (221)
T d1nr9a_          91 RKAIAGYGVALDLTLRDVQGKM  112 (221)
T ss_dssp             HHHEEEEEEEECCBCHHHHHHH
T ss_pred             chhhheeeeeeeeeeehhhhhh
Confidence            9999999999999999999764

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=229.42  Aligned_cols=96  Identities=56%  Similarity=0.960  Sum_probs=82.6

Q ss_pred             CCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhce
Q 033723           15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG   94 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~G   94 (112)
                      |+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.+++|++++|++||+|
T Consensus        10 p~~I~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~s~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~G   89 (217)
T d1sawa_          10 GKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGG   89 (217)
T ss_dssp             CCEEEEESCCBC-----------CCCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEE
T ss_pred             CCcEEEEeccHHHHHHHHCCCCCCCCeEEecChhhccCCCCceeCCcccceeeeecceEEEeeeeeceeehhhHhhcccc
Confidence            79999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             EEEEeecchHhHHhhh
Q 033723           95 YAVALDMTAREIQSSA  110 (112)
Q Consensus        95 yti~nD~TaRd~q~~~  110 (112)
                      ||++||+|+||+|...
T Consensus        90 yti~nDvt~Rd~q~~~  105 (217)
T d1sawa_          90 YALCLDMTARDVQDEC  105 (217)
T ss_dssp             EEEEECCEEHHHHHHH
T ss_pred             ceeeeeechhHHHHHH
Confidence            9999999999999654

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-37  Score=226.88  Aligned_cols=100  Identities=40%  Similarity=0.645  Sum_probs=87.5

Q ss_pred             hhccCC-CcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcH
Q 033723           10 KLIQAG-TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA   88 (112)
Q Consensus        10 ~~l~~~-~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A   88 (112)
                      ++++.| +||||+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|.....+|||+||++||||.+++++.++|
T Consensus         3 p~~p~p~~~I~cvg~Ny~~H~~E~~~~~p~~P~~F~Kp~ssl~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~i~~~~a   82 (216)
T d1gtta2           3 PTLPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADA   82 (216)
T ss_dssp             CCCSSSCSCEEEESSCBCCC--------CCSCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTG
T ss_pred             CCCCCCCCCEEEEEccHHHHHHHhCCCCCCCCEEEEEecccccCCCcccccccccceEEeeceEEEEEeccceeecHHHh
Confidence            466755 7999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             hhhhceEEEEeecchHhHHhh
Q 033723           89 MDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        89 ~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      ++||+|||++||+|+||+|..
T Consensus        83 ~~~I~Gy~i~nD~t~rd~~~~  103 (216)
T d1gtta2          83 MDYVAGYTVCNDYAIRDYLEN  103 (216)
T ss_dssp             GGGEEEEEEEECCEEGGGCCS
T ss_pred             hhheeeeeccccccchhhhhc
Confidence            999999999999999999854

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-35  Score=214.20  Aligned_cols=94  Identities=30%  Similarity=0.479  Sum_probs=87.5

Q ss_pred             CCcEEEEccCcHHHHHHhCCC--------CCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723           15 GTKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (112)
Q Consensus        15 ~~ki~~vg~NY~~h~~e~~~~--------~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~   86 (112)
                      .+||||+|+||++|++|++..        +|+.|++|+|+++++++++++|.+|.. ..+|||+|||+||||.+++|+++
T Consensus         2 ~gki~~vglNY~~h~~e~~~~~~~~p~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~-~~~~~E~ELavVIgk~~~~i~~~   80 (213)
T d1gtta1           2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREE   80 (213)
T ss_dssp             CSCEEEEESCBHHHHHHHTTGGGSTTTCSCCSSCEEEEECGGGEECTTCCEEECTT-CCEECCEEEEEEECSCBSSCCGG
T ss_pred             CceEEEEeCChHHHHHHHhhhhhcCcccCCCCCCEEEEcchHHeeCCCCcEEEecc-ceeeeeeeEEEEeecccccchhh
Confidence            489999999999999999752        378999999999999999999999974 57999999999999999999999


Q ss_pred             cHhhhhceEEEEeecchHhHHhh
Q 033723           87 TAMDYVGGYAVALDMTAREIQSS  109 (112)
Q Consensus        87 ~A~~~I~Gyti~nD~TaRd~q~~  109 (112)
                      +|++||+|||++||+|+||+|..
T Consensus        81 ~A~~~I~Gyti~nD~T~rd~~~~  103 (213)
T d1gtta1          81 DAAEYIAGYALANDVSLPEESFY  103 (213)
T ss_dssp             GGGGGEEEEEEEECCBSCCCCSS
T ss_pred             hhHHHHHHHHhhhccchHhhhhh
Confidence            99999999999999999998854

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=218.06  Aligned_cols=100  Identities=44%  Similarity=0.721  Sum_probs=85.8

Q ss_pred             hhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCc-------------------------EeeCCCCC
Q 033723           10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGT-------------------------IEVPHPLD   64 (112)
Q Consensus        10 ~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~-------------------------i~~P~~~~   64 (112)
                      .++.+++||+|+|+||++|++|++...|+.|++|+||+++++++++.                         +..|. +.
T Consensus         3 ~~~~~~rkI~cvG~NY~~Ha~E~g~~~p~~P~~F~Kp~ssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~p~-~~   81 (257)
T d1nkqa_           3 NYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPR-GV   81 (257)
T ss_dssp             GGGGGCCCEEEECSCBCSSGGGGGC----CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECT-TC
T ss_pred             cccCCCCcEEEEeccHHHHHHHHCCCCCCCCEEEEechhheecCCcccccccccccccccccccccccCCCceeCCC-cc
Confidence            35788999999999999999999999999999999999999987653                         44454 45


Q ss_pred             CceeceeEEEEECCCCCCCC---hhcHhhhhceEEEEeecchHhHHhhh
Q 033723           65 SLHHEVELAVVIGQKARDVP---ETTAMDYVGGYAVALDMTAREIQSSA  110 (112)
Q Consensus        65 ~ld~E~ELavVIGk~~~~v~---~~~A~~~I~Gyti~nD~TaRd~q~~~  110 (112)
                      ++|||+||||||||.+++++   +++|++||+|||++||+|+||+|...
T Consensus        82 ~ld~E~EL~vVIgk~~~~i~~~~~e~A~~~V~Gy~i~nD~s~Rd~q~~~  130 (257)
T d1nkqa_          82 KVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEA  130 (257)
T ss_dssp             CEEECEEEEEEECSCBCSCCCCCGGGTGGGEEEEEEEECCEEHHHHHHH
T ss_pred             cceeeEEEEEEEeeccccccchhHHHHHHHHhhhhhccccccccchhhh
Confidence            79999999999999999986   59999999999999999999999754

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.1e-28  Score=186.76  Aligned_cols=74  Identities=27%  Similarity=0.345  Sum_probs=68.1

Q ss_pred             CCCEEEecCCCCcccCCCcEeeCC--------------CCCCceeceeEEEEECCC---CCCCChhcHhhhhceEEEEee
Q 033723           38 KEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK---ARDVPETTAMDYVGGYAVALD  100 (112)
Q Consensus        38 ~~P~~f~K~~~a~~g~~~~i~~P~--------------~~~~ld~E~ELavVIGk~---~~~v~~~~A~~~I~Gyti~nD  100 (112)
                      +.|++|.|+++++++++++|.+|.              .+..||||+||+|||||.   ||+|++++|++||+|||++||
T Consensus        36 ~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~ND  115 (298)
T d1hyoa2          36 HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMND  115 (298)
T ss_dssp             TSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEEC
T ss_pred             cCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeeceEEEEEecccccCccCCHHHHHHHHHHHhhhhh
Confidence            469999999999999999999993              367899999999999975   899999999999999999999


Q ss_pred             cchHhHHhhhC
Q 033723          101 MTAREIQSSAK  111 (112)
Q Consensus       101 ~TaRd~q~~~k  111 (112)
                      ||+||+|...+
T Consensus       116 vSaRd~Q~~~~  126 (298)
T d1hyoa2         116 WSARDIQQWEY  126 (298)
T ss_dssp             CEEHHHHHHHC
T ss_pred             hhHHHHHHhhc
Confidence            99999997643

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00016  Score=51.53  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             cCCCcEEEE--ccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcH
Q 033723           13 QAGTKIVAV--GRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTA   88 (112)
Q Consensus        13 ~~~~ki~~v--g~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A   88 (112)
                      ....++.|-  |..-++--+.++.   ++|++..-..+.+..++..+.++... .+..|+||+++||++.  +..+.+++
T Consensus        51 ~~g~~~~G~Kig~ts~~~q~~~g~---~~p~~g~l~~~~~~~~~~~i~~~~~~-~~~iE~Eiaf~i~~~~~~~~~~~~~v  126 (261)
T d1sv6a_          51 AQGRRVVGRKVGLTHPKVQQQLGV---DQPDFGTLFADMCYGDNEIIPFSRVL-QPRIEAEIALVLNRDLPATDITFDEL  126 (261)
T ss_dssp             TTTCCEEEEEEECCSHHHHHTTTC---SSCEEEEEEGGGEEETTEEECTTSSS-SCEEEEEEEEEESSCBCCTTCCHHHH
T ss_pred             hcCCccccceeeccCHHHHhhcCC---CCcccccccCceEEeecccccccccc-ccceeeEEEEEecCccccccccHHHH
Confidence            334555553  3333333344444   35766555666778888888876554 5889999999999994  57899999


Q ss_pred             hhhhceEEEEeecchHhHHh
Q 033723           89 MDYVGGYAVALDMTAREIQS  108 (112)
Q Consensus        89 ~~~I~Gyti~nD~TaRd~q~  108 (112)
                      .++|.++..++++..+.++.
T Consensus       127 ~~~i~~v~~~iEi~~~r~~~  146 (261)
T d1sv6a_         127 YNAIEWVLPALEVVGSRIRD  146 (261)
T ss_dssp             HTTEEEEEEEEEEECCSBTT
T ss_pred             HHHhhhcccchhcchhhhhh
Confidence            99999999999998776653