Citrus Sinensis ID: 033740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRRVSFACFY
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccccccccccEEEEEEEcHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcHHHccHHHcccccEEEEEEEEEEEEHHHHHHEEcccHHHHcccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mtfkrrnggrnkhgrghvnfircsncgkccpkdkAIKRFLVRNIVEQAAVRDVqdaciydnyvlpkLYAKMQYCVSCAIHSHVVrvrsrtdrrnreppkrfmRRRVSFACFY
Flexible Loop (DISEMBL)
mtfkrrnggrnkhgrghvnfircsncgkccPKDKAIKRFLVRNIVEqaavrdvqdacIYDNYVLPKLYAKMQYCVSCAIhshvvrvrsrtdrrnreppkrfmrrrvsfacfy
Low Complexity Region (SEG)
MTFkrrnggrnkhgrghVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHvvrvrsrtdrrnrEPPKRFMRRRVSFACFY
Disordered region (IsUnstruct)
***************GHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHVVRV**************************
Disordered Region (DISOPRED)
***K**************NFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHVVR*****************RRR**FACFY
Disordered Region (DISEMBL)
***********KHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHVV************PPKRFMRRRVSFACFY
Disordered Region (DISPRO)
***************GHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHVVRVRSRT*RRNREPPKRFMRRRVSFACFY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRRVSFACFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P49206	131	40S ribosomal protein S26	yes	no	0.937	0.801	0.838	8e-47
Q8LPJ7	133	40S ribosomal protein S26	yes	no	0.937	0.789	0.838	9e-47
Q9LYK9	130	40S ribosomal protein S26	yes	no	0.937	0.807	0.828	4e-46
P49216	133	40S ribosomal protein S26	no	no	0.767	0.646	0.837	2e-38
O93931	126	40S ribosomal protein S26	N/A	no	0.901	0.801	0.722	6e-38
O45499	117	40S ribosomal protein S26	yes	no	0.901	0.863	0.722	4e-37
P13008	114	40S ribosomal protein S26	yes	no	0.892	0.877	0.72	1e-36
P27085	127	40S ribosomal protein S26	N/A	no	0.901	0.795	0.683	5e-36
Q9GT45	115	40S ribosomal protein S26	yes	no	0.892	0.869	0.7	8e-36
Q9UTG4	119	40S ribosomal protein S26	yes	no	0.901	0.848	0.673	1e-35

>sp|P49206|RS261_ARATH 40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 95/105 (90%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKH RGHVN IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPJ7|RS262_ARATH 40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2

 Score =  184 bits (468), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 95/105 (90%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKH RGHVN IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYK9|RS263_ARATH 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 94/105 (89%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

Arabidopsis thaliana (taxid: 3702)

>sp|P49216|RS26_ORYSJ 40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 81/86 (94%)

Query: 1  MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
          MTFKRRNGGRNKHGRGHV +IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQ+AC++D
Sbjct: 1  MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61 NYVLPKLYAKMQYCVSCAIHSHVVRV 86
           YVLPKLYAK+ +CVSCAIH+H+VRV
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRV 86

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O93931|RS26_SCHCO 40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1

 Score =  155 bits (393), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 81/101 (80%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRNGGRNK GRGHV F+RCSNC +C  KDKAIKRF VRN+VE AA+RD+ DA +Y 
Sbjct: 1   MTKKRRNGGRNKSGRGHVTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYP 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRF 101
            Y +PKLY K+ YCVSCAIHSHVVRVRSR  RRNR PP R 
Sbjct: 61  EYAIPKLYIKIAYCVSCAIHSHVVRVRSREGRRNRAPPPRV 101

Schizophyllum commune (taxid: 5334)

>sp|O45499|RS26_CAEEL 40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=3 SV=1

 Score =  152 bits (385), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 82/101 (81%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ DA  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRF 101
            Y LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF 101

Caenorhabditis elegans (taxid: 6239)

>sp|P13008|RS26_DROME 40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 83/100 (83%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRNGGRNKH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A I+D
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKR 100
           +YVLPKLYAK+ YCVSCAIHS VVR RSR  RR R PP R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLR 100

Drosophila melanogaster (taxid: 7227)

>sp|P27085|RS26_OCTVU 40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 82/101 (81%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRN GR K GRGHV +IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ DA +Y+
Sbjct: 1   MTSKRRNNGRGKKGRGHVKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRF 101
            Y LPKLYAK+ YCVSCAIHS +VR RSR  R++R PP RF
Sbjct: 61  VYALPKLYAKLLYCVSCAIHSKIVRNRSREARKDRTPPIRF 101

Octopus vulgaris (taxid: 6645)

>sp|Q9GT45|RS26_ANOGA 40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2

 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 82/100 (82%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ DA +Y 
Sbjct: 1   MTKKRRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYS 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKR 100
           +YVLPKLYAK+ YCVSCAIHS VVR RS+  RR R PP+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQR 100

Anopheles gambiae (taxid: 7165)

>sp|Q9UTG4|RS26B_SCHPO 40S ribosomal protein S26-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps26b PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 79/101 (78%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRN GRNKHGRGHV F+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ +A +Y 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRF 101
            Y +PKLY K+QYCVSCAIHS VVRVRSR  RR R PP R 
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRV 101

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
449491651	129	PREDICTED: 40S ribosomal protein S26-1-l	0.973	0.844	0.899	3e-51
449457409	129	PREDICTED: 40S ribosomal protein S26-1-l	0.973	0.844	0.899	4e-51
449441254	129	PREDICTED: 40S ribosomal protein S26-1-l	0.937	0.813	0.923	8e-51
357495305	230	40S ribosomal protein [Medicago truncatu	0.937	0.456	0.904	1e-50
297736505	150	unnamed protein product [Vitis vinifera]	0.928	0.693	0.913	5e-50
351725819	130	uncharacterized protein LOC100305706 [Gl	0.937	0.807	0.904	5e-50
356511913	129	PREDICTED: 40S ribosomal protein S26-1-l	0.937	0.813	0.904	7e-50
351724687	130	uncharacterized protein LOC100499862 [Gl	0.937	0.807	0.904	7e-50
358248998	129	uncharacterized protein LOC100784958 [Gl	0.937	0.813	0.904	7e-50
388514637	129	unknown [Lotus japonicus]	0.937	0.813	0.904	9e-50

>gi|449491651|ref|XP_004158964.1| PREDICTED: 40S ribosomal protein S26-1-like [Cucumis sativus]

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/109 (89%), Positives = 103/109 (94%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+YD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRRVSFA 109
            Y LPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PP+RF+RRR   A
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQA 109

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457409|ref|XP_004146441.1| PREDICTED: 40S ribosomal protein S26-1-like [Cucumis sativus]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/109 (89%), Positives = 103/109 (94%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+YD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRRVSFA 109
            Y LPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNR+PP+RF+RRR   A
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQA 109

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441254|ref|XP_004138397.1| PREDICTED: 40S ribosomal protein S26-1-like [Cucumis sativus] gi|449514728|ref|XP_004164463.1| PREDICTED: 40S ribosomal protein S26-1-like [Cucumis sativus]

 Score =  203 bits (517), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 101/105 (96%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+YD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPP+RF+RRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495305|ref|XP_003617941.1| 40S ribosomal protein [Medicago truncatula] gi|355519276|gb|AET00900.1| 40S ribosomal protein [Medicago truncatula]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+YD
Sbjct: 101 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 160

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLY KMQYCVSCAIHSHVVRVRSRTDRR R+PP+RF+RRR
Sbjct: 161 QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736505|emb|CBI25376.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/104 (91%), Positives = 99/104 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+YD
Sbjct: 27  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 86

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRR 104
            Y LPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PP+RF RR
Sbjct: 87  TYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFRRR 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725819|ref|NP_001235570.1| uncharacterized protein LOC100305706 [Glycine max] gi|255626367|gb|ACU13528.1| unknown [Glycine max]

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+Y+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPP+RF+RRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511913|ref|XP_003524666.1| PREDICTED: 40S ribosomal protein S26-1-like [Glycine max]

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+Y+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPP+RF+RRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724687|ref|NP_001237066.1| uncharacterized protein LOC100499862 [Glycine max] gi|255627229|gb|ACU13959.1| unknown [Glycine max]

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+Y+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPP+RF+RRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248998|ref|NP_001239976.1| uncharacterized protein LOC100784958 [Glycine max] gi|255627385|gb|ACU14037.1| unknown [Glycine max] gi|255642187|gb|ACU21358.1| unknown [Glycine max]

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+Y+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPP+RF+RRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514637|gb|AFK45380.1| unknown [Lotus japonicus]

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MTFKRRNGGRNKHGRGHV FIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQ+AC+YD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLY KMQYCVSCAIHSHVVRVRSRTDRR R+PP+RF+RRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2061883	133	AT2G40510 [Arabidopsis thalian	0.937	0.789	0.609	2.3e-30
TAIR|locus:2061928	131	AT2G40590 [Arabidopsis thalian	0.937	0.801	0.609	2.3e-30
TAIR|locus:2078491	130	AT3G56340 [Arabidopsis thalian	0.937	0.807	0.6	1e-29
WB|WBGene00004495	117	rps-26 [Caenorhabditis elegans	0.928	0.888	0.519	7.6e-25
ZFIN|ZDB-GENE-030131-8606	119	rps26 "ribosomal protein S26"	0.723	0.680	0.580	2.9e-23
ZFIN|ZDB-GENE-040426-1706	115	rps26l "ribosomal protein S26,	0.723	0.704	0.580	2.9e-23
UNIPROTKB|J9P4R8	121	RPS26 "Uncharacterized protein	0.767	0.710	0.574	4.8e-23
UNIPROTKB|F1MB60	115	RPS26 "40S ribosomal protein S	0.723	0.704	0.580	6.1e-23
UNIPROTKB|Q56JV1	115	RPS26 "40S ribosomal protein S	0.723	0.704	0.580	6.1e-23
UNIPROTKB|P62854	115	RPS26 "40S ribosomal protein S	0.723	0.704	0.580	6.1e-23

TAIR|locus:2061883 AT2G40510 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/105 (60%), Positives = 70/105 (66%)

Query:     1 MTFXXXXXXXXXXXXXXVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
             MTF              VN IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+
Sbjct:     1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query:    61 NYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXXEPPKRFMRRR 105
              Y LPKLYAK QYCVSCAIHSH              PP RF RR+
Sbjct:    61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2061928 AT2G40590 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/105 (60%), Positives = 70/105 (66%)

Query:     1 MTFXXXXXXXXXXXXXXVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
             MTF              VN IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+
Sbjct:     1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query:    61 NYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXXEPPKRFMRRR 105
              Y LPKLYAK QYCVSCAIHSH              PP RF RR+
Sbjct:    61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2078491 AT3G56340 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 63/105 (60%), Positives = 69/105 (65%)

Query:     1 MTFXXXXXXXXXXXXXXVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
             MTF              V  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQ+A +Y+
Sbjct:     1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query:    61 NYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXXEPPKRFMRRR 105
              Y LPKLYAK QYCVSCAIHSH              PP RF RR+
Sbjct:    61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

WB|WBGene00004495 rps-26 [Caenorhabditis elegans (taxid:6239)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 54/104 (51%), Positives = 63/104 (60%)

Query:     1 MTFXXXXXXXXXXXXXXVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
             MTF              V FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ DA  Y 
Sbjct:     1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query:    61 NYVLPKLYAKMQYCVSCAIHSHXXXXXXXXXXXXXEPPKRFMRR 104
              Y LPKLY K+ YC++CAIHS               PP RF +R
Sbjct:    61 QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

ZFIN|ZDB-GENE-030131-8606 rps26 "ribosomal protein S26" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 47/81 (58%), Positives = 58/81 (71%)

Query:    21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80
             IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D+YVLPKLY K+ YCVSCAIH
Sbjct:    21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDSYVLPKLYVKLHYCVSCAIH 80

Query:    81 SHXXXXXXXXXXXXXEPPKRF 101
             S               PP RF
Sbjct:    81 SKVVRNRSREARKDRTPPPRF 101

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-040426-1706 rps26l "ribosomal protein S26, like" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 47/81 (58%), Positives = 58/81 (71%)

Query:    21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80
             IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D+YVLPKLY K+ YCVSCAIH
Sbjct:    21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDSYVLPKLYVKLHYCVSCAIH 80

Query:    81 SHXXXXXXXXXXXXXEPPKRF 101
             S               PP RF
Sbjct:    81 SKVVRNRSREARKDRTPPPRF 101

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9P4R8 RPS26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 50/87 (57%), Positives = 60/87 (68%)

Query:    21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80
             IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIH
Sbjct:    21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80

Query:    81 SHXXXXXXXXXXXXXEPPKRFMRRRVS 107
             S               PP RF R  VS
Sbjct:    81 SKVVRNRSREARKDRTPPPRF-RPAVS 106

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1MB60 RPS26 "40S ribosomal protein S26" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/81 (58%), Positives = 57/81 (70%)

Query:    21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80
             IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIH
Sbjct:    21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80

Query:    81 SHXXXXXXXXXXXXXEPPKRF 101
             S               PP RF
Sbjct:    81 SKVVRNRSREARKDRTPPPRF 101

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56JV1 RPS26 "40S ribosomal protein S26" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/81 (58%), Positives = 57/81 (70%)

Query:    21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80
             IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIH
Sbjct:    21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80

Query:    81 SHXXXXXXXXXXXXXEPPKRF 101
             S               PP RF
Sbjct:    81 SKVVRNRSREARKDRTPPPRF 101

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62854 RPS26 "40S ribosomal protein S26" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/81 (58%), Positives = 57/81 (70%)

Query:    21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80
             IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A ++D YVLPKLY K+ YCVSCAIH
Sbjct:    21 IRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH 80

Query:    81 SHXXXXXXXXXXXXXEPPKRF 101
             S               PP RF
Sbjct:    81 SKVVRNRSREARKDRTPPPRF 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0033119 "negative regulation of RNA splicing" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49171	RS26_PIG	No assigned EC number	0.6831	0.9017	0.8782	yes	no
P62855	RS26_MOUSE	No assigned EC number	0.6831	0.9017	0.8782	yes	no
P62854	RS26_HUMAN	No assigned EC number	0.6831	0.9017	0.8782	yes	no
P62856	RS26_RAT	No assigned EC number	0.6831	0.9017	0.8782	yes	no
Q9GT45	RS26_ANOGA	No assigned EC number	0.7	0.8928	0.8695	yes	no
P49206	RS261_ARATH	No assigned EC number	0.8380	0.9375	0.8015	yes	no
Q54TL8	RS26_DICDI	No assigned EC number	0.5980	0.8928	0.8928	yes	no
O93931	RS26_SCHCO	No assigned EC number	0.7227	0.9017	0.8015	N/A	no
P61251	RS26_MACFA	No assigned EC number	0.6831	0.9017	0.8782	N/A	no
Q8LPJ7	RS262_ARATH	No assigned EC number	0.8380	0.9375	0.7894	yes	no
P41959	RS26_BRUPA	No assigned EC number	0.7349	0.7410	1.0	N/A	no
P39938	RS26A_YEAST	No assigned EC number	0.64	0.8928	0.8403	yes	no
P39939	RS26B_YEAST	No assigned EC number	0.64	0.8928	0.8403	yes	no
Q9LYK9	RS263_ARATH	No assigned EC number	0.8285	0.9375	0.8076	yes	no
Q8SRN2	RS26_ENCCU	No assigned EC number	0.4945	0.8125	0.8666	yes	no
Q9UTG4	RS26B_SCHPO	No assigned EC number	0.6732	0.9017	0.8487	yes	no
O45499	RS26_CAEEL	No assigned EC number	0.7227	0.9017	0.8632	yes	no
P13008	RS26_DROME	No assigned EC number	0.72	0.8928	0.8771	yes	no
P30742	RS26_CRICR	No assigned EC number	0.6732	0.9017	0.8782	N/A	no
Q56JV1	RS26_BOVIN	No assigned EC number	0.6831	0.9017	0.8782	yes	no
Q6Q312	RS26_SHEEP	No assigned EC number	0.6831	0.9017	0.8782	N/A	no
P21772	RS26_NEUCR	No assigned EC number	0.6534	0.9017	0.8487	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029423001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (144 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)				•	•	•	•		0.904
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•	•	•	•		0.896
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.894
	GSVIVG00016616001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)				•	•	•	•		0.864
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)				•	•	•	•		0.863
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•			0.860
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•	•		0.845
	GSVIVG00002547001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (210 aa)				•	•	•	•		0.845
	GSVIVG00034021001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence;; Required for the asse [...] (274 aa)				•	•	•	•		0.837
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)				•	•	•	•		0.830

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
PLN00186	109	PLN00186, PLN00186, ribosomal protein S26; Provisi	2e-58
pfam01283	113	pfam01283, Ribosomal_S26e, Ribosomal protein S26e	1e-56
PTZ00172	108	PTZ00172, PTZ00172, 40S ribosomal protein S26; Pro	2e-51
COG4830	108	COG4830, RPS26B, Ribosomal protein S26 [Translatio	1e-37
PRK09335	95	PRK09335, PRK09335, 30S ribosomal protein S26e; Pr	2e-15

>gnl|CDD|215093 PLN00186, PLN00186, ribosomal protein S26; Provisional

 Score =  175 bits (445), Expect = 2e-58
 Identities = 87/105 (82%), Positives = 94/105 (89%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRNGGRNKHGRGHV  IRCSNCGKC PKDKAIKRFLVRNIVEQAA+RDVQ+AC+YD
Sbjct: 1   MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYD 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
            Y LPKLYAK+QYC+SCAIHS VVRVRSR +RR REPP RF RR+
Sbjct: 61  GYTLPKLYAKVQYCISCAIHSRVVRVRSRENRRIREPPPRFRRRK 105

Length = 109

>gnl|CDD|216410 pfam01283, Ribosomal_S26e, Ribosomal protein S26e

 Score =  170 bits (434), Expect = 1e-56
 Identities = 71/106 (66%), Positives = 84/106 (79%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           M  KRRN GR+K  RGHV  +RC+NCG+C PKDKAIKRF+VRNIVE AA RD+ +A +Y+
Sbjct: 1   MPKKRRNNGRSKKNRGHVKPVRCTNCGRCVPKDKAIKRFVVRNIVEAAAARDLSEASVYE 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRRV 106
            Y LPKLY K+QYCVSCAIHS +VRVRSR DR+ R PP RF RR+ 
Sbjct: 61  GYALPKLYVKLQYCVSCAIHSKIVRVRSREDRKIRTPPPRFRRRKD 106

Length = 113

>gnl|CDD|185497 PTZ00172, PTZ00172, 40S ribosomal protein S26; Provisional

 Score =  157 bits (398), Expect = 2e-51
 Identities = 74/103 (71%), Positives = 84/103 (81%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           MT KRRN GR+KHGRGHV  +RCSNCG+C PKDKAIKRF+VRNIV+ A+VRD+ +A +Y 
Sbjct: 1   MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYY 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMR 103
            Y LPKLY K QYCVSCAIHS VVRVRSR DR+ R PPKR  R
Sbjct: 61  GYPLPKLYMKQQYCVSCAIHSRVVRVRSREDRKIRTPPKRPFR 103

Length = 108

>gnl|CDD|227167 COG4830, RPS26B, Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

 Score =  122 bits (308), Expect = 1e-37
 Identities = 62/100 (62%), Positives = 74/100 (74%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           M  KRRN GRNK GRGHV ++RC NCGK  PKDKAIKR  +R+ VE AA RD+ +A IY 
Sbjct: 1   MPKKRRNRGRNKKGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYS 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKR 100
            Y +PK Y K+QYCVSCAIH+ +VRVRSR +R+ R P  R
Sbjct: 61  EYAVPKTYNKLQYCVSCAIHARIVRVRSREERKIRAPFNR 100

Length = 108

>gnl|CDD|181785 PRK09335, PRK09335, 30S ribosomal protein S26e; Provisional

 Score = 65.5 bits (160), Expect = 2e-15
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 1  MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
          M  KR N GR K  +GHV +++C NCG+  P+DKA+    + + V+    ++++      
Sbjct: 1  MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEKKGAI- 59

Query: 61 NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPP 98
             + +      YCV+CA+H  ++++R   +R+ + P 
Sbjct: 60 ---IARYPVTKCYCVNCAVHLGIIKIRPEEERKKKAPL 94

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PLN00186	109	ribosomal protein S26; Provisional	100.0
PTZ00172	108	40S ribosomal protein S26; Provisional	100.0
PF01283	113	Ribosomal_S26e: Ribosomal protein S26e; InterPro:	100.0
PRK09335	95	30S ribosomal protein S26e; Provisional	100.0
KOG1768	115	consensus 40s ribosomal protein S26 [Translation,	100.0
COG4830	108	RPS26B Ribosomal protein S26 [Translation, ribosom	100.0

>PLN00186 ribosomal protein S26; Provisional

Probab=100.00  E-value=4.3e-65  Score=367.64  Aligned_cols=107  Identities=81%  Similarity=1.345  Sum_probs=103.1

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      ||+|||||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+||++||+||+||++|.|||||+|++||||||||
T Consensus         1 M~kKRrN~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~vy~~y~lPKly~K~~YCVSCAIH   80 (109)
T PLN00186          1 MTKKRRNGGRNKHGRGHVKRIRCSNCGKCVPKDKAIKRFLVRNIVEQAALRDVQEACVYDGYTLPKLYAKVQYCISCAIH   80 (109)
T ss_pred             CCcccccCCCCCCCCCCCcceeeCCCcccccccceEEEEecccCccHHHHHHHHhhhcccccccchhhhceEEEEeehhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCchhhccCCCCccccccCCc
Q 033740           81 SHVVRVRSRTDRRNREPPKRFMRRRVS  107 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~p~r~~~~~~~  107 (112)
                      ++|||+||+|+||+|+||++|+...++
T Consensus        81 ~~iVRvRs~e~Rk~r~pp~r~~~~~~~  107 (109)
T PLN00186         81 SRVVRVRSRENRRIREPPPRFRRRKDD  107 (109)
T ss_pred             cceeecCChHHccccCCCccccccccC
Confidence            999999999999999999999443443

>PTZ00172 40S ribosomal protein S26; Provisional

Probab=100.00  E-value=1.1e-64  Score=365.19  Aligned_cols=105  Identities=70%  Similarity=1.185  Sum_probs=102.5

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      ||+|||||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+|+++||+||+||++|+|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~irniVe~aa~rDl~~a~v~~~y~lPKly~k~~YCVSCAIH   80 (108)
T PTZ00172          1 MTSKRRNNGRSKHGRGHVKPVRCSNCGRCVPKDKAIKRFVVRNIVDAASVRDIAEASVYYGYPLPKLYMKQQYCVSCAIH   80 (108)
T ss_pred             CCcccccCCCCCCCCCCCccEEeCCccccccccceEEEEeccCCccHHHHHHHHHhhchhccccccceeeeEEeeehhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCchhhccCCCCccccccC
Q 033740           81 SHVVRVRSRTDRRNREPPKRFMRRR  105 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~p~r~~~~~  105 (112)
                      ++|||+||+|+||+|+||+++.++.
T Consensus        81 ~~iVRvRs~e~Rk~r~pp~r~~~~~  105 (108)
T PTZ00172         81 SRVVRVRSREDRKIRTPPKRPFRPT  105 (108)
T ss_pred             CCeeecCChHHccccCCCCCCCCCc
Confidence            9999999999999999999985553

>PF01283 Ribosomal_S26e: Ribosomal protein S26e; InterPro: IPR000892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.9e-65  Score=368.03  Aligned_cols=103  Identities=69%  Similarity=1.236  Sum_probs=73.0

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      ||+|||||||+|+|+||+++|+|+|||+|||||||||+|+|+||||+|++|||+||+||++|+|||||+|+|||||||||
T Consensus         1 M~~KRrN~Gr~KkgrGhv~~V~C~nCgr~vPKDKAIkrf~i~niVeaaa~rdi~~a~v~~~y~lPKlyvK~~YCvSCAIH   80 (113)
T PF01283_consen    1 MTKKRRNNGRSKKGRGHVQPVRCDNCGRCVPKDKAIKRFVIRNIVEAAAVRDISEASVYDAYVLPKLYVKLYYCVSCAIH   80 (113)
T ss_dssp             -----TTTTSS-SSSS---EEE-TTTB-EEECCCSEEEEEEEESS-CCCHHHHHHCB-SSS--S-EEEEEEEE-CHHHHH
T ss_pred             CCcccccCCCCCCCCCCCcCEeeCcccccCcCCceEEEEEccCCccHHHHHHHhhcceeeecccccceeEEEEeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCchhhccCCCCccccc
Q 033740           81 SHVVRVRSRTDRRNREPPKRFMR  103 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~p~r~~~  103 (112)
                      ++|||+||+|+||+++||++|++
T Consensus        81 ~~IVr~Rs~e~RK~r~~p~~~~~  103 (113)
T PF01283_consen   81 SKIVRVRSREERKDRTPPPRFRP  103 (113)
T ss_dssp             TTSS----TCCCC--S-------
T ss_pred             ccccccCChHHccccCCCCcCCc
Confidence            99999999999999999999943

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. One of these families, the S26E family, includes mammalian S26 []; Octopus S26 []; Drosophila S26 (DS31) []; plant cytoplasmic S26; and fungal S26 []. These proteins have 114 to 127 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_a 3U5C_a 2XZM_5 2XZN_5.

>PRK09335 30S ribosomal protein S26e; Provisional

Probab=100.00  E-value=1.4e-58  Score=327.26  Aligned_cols=94  Identities=30%  Similarity=0.675  Sum_probs=92.0

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      ||+||+||||+|+|+||+++|+|+|||++||||||||+|+|+||||+++++||+||++|    |||||+|++||||||||
T Consensus         1 M~kKRrn~GR~K~~rGhv~~V~C~nCgr~vPKDKAIkrf~i~n~Ve~a~~rdl~~a~~~----lpk~~~k~~YCvSCAiH   76 (95)
T PRK09335          1 MPKKRENRGRRKGDKGHVGYVQCDNCGRRVPRDKAVCVTKMYSPVDPQLAKELEKKGAI----IARYPVTKCYCVNCAVH   76 (95)
T ss_pred             CCcccccCCCCCCCCCCCccEEeCCCCCcCcCCceEEEEEecCCCCHHHHHHHHhCcee----eeeeeeeeEEechhhhh
Confidence            99999999999999999999999999999999999999999999999999999999877    99999999999999999


Q ss_pred             cceecccCchhhccCCCC
Q 033740           81 SHVVRVRSRTDRRNREPP   98 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~p   98 (112)
                      ++|||+||+|+||+++|.
T Consensus        77 ~~IVrvRs~e~Rk~r~~~   94 (95)
T PRK09335         77 LGIIKIRPEEERKKKAPL   94 (95)
T ss_pred             ccccccCChHHcccccCC
Confidence            999999999999999864

>KOG1768 consensus 40s ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-55  Score=320.72  Aligned_cols=106  Identities=71%  Similarity=1.194  Sum_probs=102.8

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      ||+||+|+|++|+|+||+++|+|+||++|+|||||||+|+|+||||++++|||+|||||++|+|||||+|||||||||||
T Consensus         1 m~~kr~~~gr~k~~~g~v~~i~c~~c~~~~~kdKaIk~f~i~niVEaaavrdiseasv~d~y~~pKly~Klhycvscaih   80 (115)
T KOG1768|consen    1 MTKKRRNAGRNKKGRGHVIPIRCTNCGRCMPKDKAIKRFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIH   80 (115)
T ss_pred             CCcccccCCCCCCCCcceeeeeeccccccchHHHHHHHHHHHHHHHHHHhhhhhhheeccccccccccceeeeeEeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCchhhccCCCCccccccCC
Q 033740           81 SHVVRVRSRTDRRNREPPKRFMRRRV  106 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~p~r~~~~~~  106 (112)
                      ++|||+||+|.||+|+||++|.+...
T Consensus        81 skVvR~rS~e~rrir~pp~rf~~~~~  106 (115)
T KOG1768|consen   81 SKVVRVRSREARRIRTPPPRFSPRAP  106 (115)
T ss_pred             eeeeccchhhhhcccCCCcccCcccc
Confidence            99999999999999999999855444

>COG4830 RPS26B Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-53  Score=302.77  Aligned_cols=97  Identities=63%  Similarity=1.108  Sum_probs=96.6

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      |||||+||||+|+|+||+.+|+|+|||..||||||||+|.|+|+||+|+++||++|+||+.|.+||+|.|+|||||||||
T Consensus         1 mpkkR~N~GR~K~~rGhv~~v~CdnCg~~vPkdKAikr~~i~s~Ve~a~~rdL~~asIy~~y~vpk~~~k~qyCVsCAih   80 (108)
T COG4830           1 MPKKRRNRGRNKKGRGHVKYVRCDNCGKAVPKDKAIKRTAIRSPVEAAAARDLSEASIYSEYAVPKTYNKLQYCVSCAIH   80 (108)
T ss_pred             CcchhhhcCCCCCCCCCccceeeccccccCCccceeeEeeccCcccHHHHHHHhhceeeeeeeccccccceeeeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCchhhccCCC
Q 033740           81 SHVVRVRSRTDRRNREP   97 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~   97 (112)
                      ++|||+||+|+||++.|
T Consensus        81 ~~IvrVRSre~RK~r~p   97 (108)
T COG4830          81 ARIVRVRSREERKIRAP   97 (108)
T ss_pred             eeEEEEecchhhhhcCC
Confidence            99999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3u5c_a	119	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-19
2xzm_5	119	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-13
3zey_V	111	High-resolution Cryo-electron Microscopy Structure		7e-13

>pdb|3U5C|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 119

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 51/83 (61%)
Query: 18  VNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSC 77
           V  +RC NC K  PKDKAIKR  +RNIVE AAVRD+ +A +Y  Y LPK Y K+ YCVSC
Sbjct: 18  VKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSC 77
Query: 78  AIHSHXXXXXXXXXXXXXEPPKR 100
           AIH+               PP+R
Sbjct: 78  AIHARIVRVRSREDRKNRAPPQR 100

>pdb|2XZM|5 Chain 5, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 119

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 23 CSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDN--YVLPKLYAKMQYCVSCAIH 80
          C+NCG+   KDKA+KR+ VR++V+ ++ RD+Q    ++N    +PKLY K+QYC+SCAIH
Sbjct: 23 CTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCAIH 82
Query: 81 S 81
          S
Sbjct: 83 S 83

>pdb|3ZEY|V Chain V, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 111

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 18 VNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIY--DNYVLPKLYAKMQYCV 75
          V  + C NC +  PKDK++ RF+VR +++QA+ RDV +A +     + +PKLY K +YC+
Sbjct: 20 VRPVHCFNCSRLVPKDKSVGRFVVRRMLDQASARDVAEASLIYGSGFPMPKLYMKQRYCI 79
Query: 76 SCAIHS 81
          +CAIHS
Sbjct: 80 ACAIHS 85
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	2e-44
2xzm_5	119	Ribosomal protein S26E containing protein; ribosom	2e-41

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score =  139 bits (351), Expect = 2e-44
 Identities = 5/105 (4%), Positives = 17/105 (16%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           M+         +  +  +               +        + V    V    +  +  
Sbjct: 1   MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA 60

Query: 61  NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
             ++  +          +       V          P        
Sbjct: 61  ARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPG 105

>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5 Length = 119

 Score =  131 bits (331), Expect = 2e-41
 Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 1   MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD 60
           M  KRRN GR++  RGH   + C+NCG+   KDKA+KR+ VR++V+ ++ RD+Q    ++
Sbjct: 1   MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFE 60

Query: 61  --NYVLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPKRFMRRR 105
                +PKLY K+QYC+SCAIHS VVRVR   DRR R PP R  + +
Sbjct: 61  NEKQGIPKLYVKLQYCISCAIHSRVVRVRCAEDRRIRRPPIRNRKPQ 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3u5c_a	119	40S ribosomal protein S26-A, 40S ribosomal protein	100.0
2xzm_5	119	Ribosomal protein S26E containing protein; ribosom	100.0

>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a

Probab=100.00  E-value=1.1e-67  Score=384.84  Aligned_cols=106  Identities=61%  Similarity=1.042  Sum_probs=96.9

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH   80 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH   80 (112)
                      ||+|||||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+||+|||+|||||++|+|||||+|+|||||||||
T Consensus         1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaavRDi~easv~~~y~lPKlyvKl~YCVSCAIH   80 (119)
T 3u5c_a            1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIH   80 (119)
T ss_dssp             -CCCCSSTTSCCCSCSCCCEEECTTTCCEEEGGGSCEEEEEECSSCSSTHHHHHHTCCSSSCCCCCEEEEEECCSHHHHH
T ss_pred             CCcccccCCCCCCCCCCCccEeeccccccccccceeeEEeCcCcccHHHHHHHHhccchhhccccceeEEEEEeeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCchhhccCCCCccccccCCc
Q 033740           81 SHVVRVRSRTDRRNREPPKRFMRRRVS  107 (112)
Q Consensus        81 skVVR~RS~e~RK~r~~p~r~~~~~~~  107 (112)
                      ++||||||+|+||+|+||+|| ++.++
T Consensus        81 skVVR~RS~e~Rk~r~pp~r~-~~~~~  106 (119)
T 3u5c_a           81 ARIVRVRSREDRKNRAPPQRP-RFNRE  106 (119)
T ss_dssp             TSSCCCCCTTTTSCCCCC---------
T ss_pred             ccccccCChHHcccCCCCCcc-CcccC
Confidence            999999999999999999999 55443

>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5

Probab=100.00  E-value=8.4e-65  Score=369.64  Aligned_cols=103  Identities=50%  Similarity=0.939  Sum_probs=95.8

Q ss_pred             CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhcccc--ccccceeeeeEEEeeeec
Q 033740            1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD--NYVLPKLYAKMQYCVSCA   78 (112)
Q Consensus         1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~--~y~lPKlyvKl~YCvSCA   78 (112)
                      ||+|||||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+|++|||+||+||+  +|+|||||+|+|||||||
T Consensus         1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA   80 (119)
T 2xzm_5            1 MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA   80 (119)
T ss_dssp             -CCCCSSTTCCCCSSSCCCEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred             CCcccccCCCCCCCCCCCccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence            999999999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             eecceecccCchhhccCCCCccccc
Q 033740           79 IHSHVVRVRSRTDRRNREPPKRFMR  103 (112)
Q Consensus        79 IHskVVR~RS~e~RK~r~~p~r~~~  103 (112)
                      ||++||||||+|+||+|+||++|++
T Consensus        81 IH~kIVRvRs~e~Rk~r~pp~~~~~  105 (119)
T 2xzm_5           81 IHSRVVRVRCAEDRRIRRPPIRNRK  105 (119)
T ss_dssp             HHTTSSCCCCTGGGGCCCC------
T ss_pred             eeccccccCCHHHcccCCCCCcccc
Confidence            9999999999999999999999843

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00