Citrus Sinensis ID: 033754

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccHHcccHHHHHcEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccccccEEEEccEEEEEEEcccHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNSVGRQLAgyltqpsqglnlfsrNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL
Flexible Loop (DISEMBL)
mnsvgrqlagyltqpsqgLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIkreqrhhiknsekrvlarknlerkirsqdlarkLKAILVKKVRGL
Low Complexity Region (SEG)
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL
Disordered region (IsUnstruct)
*****************GLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQ************************************************IL*******
Disordered Region (DISOPRED)
********AGYLTQPSQGLNLFSR*****HQVQQWRGIRVKVFNGNLEQALSW**********************************************KLKAILVKKVRG*
Disordered Region (DISEMBL)
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL
Disordered Region (DISPRO)
*****R*L*GYLTQPSQGLNLFSRN*CQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIK*E*R*HIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
296086848	106	unnamed protein product [Vitis vinifera]	0.946	1.0	0.732	1e-34
359480413	141	PREDICTED: uncharacterized protein LOC10	0.937	0.744	0.729	5e-34
388518987	112	unknown [Lotus japonicus]	1.0	1.0	0.651	5e-33
388521069	112	unknown [Lotus japonicus]	1.0	1.0	0.651	7e-33
356568575	112	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.669	1e-31
351722514	112	uncharacterized protein LOC100500533 [Gl	0.946	0.946	0.652	2e-31
255578365	109	conserved hypothetical protein [Ricinus	0.928	0.954	0.654	6e-30
449464006	103	PREDICTED: uncharacterized protein LOC10	0.901	0.980	0.657	1e-29
240255434	101	Ribosomal protein S21 family protein [Ar	0.901	1.0	0.598	2e-28
9294294	99	unnamed protein product [Arabidopsis tha	0.883	1.0	0.590	3e-27

>gi|296086848|emb|CBI33015.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 90/112 (80%), Gaps = 6/112 (5%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           M+S+ R ++     PS   N  S   C+   +QQWRGIRVKVFNGNLE AL  MQRKMQS
Sbjct: 1   MSSIVRHVSTIFRCPSLVPNSLS---CE---LQQWRGIRVKVFNGNLESALVVMQRKMQS 54

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           SGIERLIKREQ HHIKNSEKRVLARKNLER+IRSQDLARKLKAIL+KKVRGL
Sbjct: 55  SGIERLIKREQTHHIKNSEKRVLARKNLERRIRSQDLARKLKAILIKKVRGL 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480413|ref|XP_003632453.1| PREDICTED: uncharacterized protein LOC100855184 [Vitis vinifera]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 89/111 (80%), Gaps = 6/111 (5%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           M+S+ R ++     PS   N  S   C+   +QQWRGIRVKVFNGNLE AL  MQRKMQS
Sbjct: 1   MSSIVRHVSTIFRCPSLVPNSLS---CE---LQQWRGIRVKVFNGNLESALVVMQRKMQS 54

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRG 111
           SGIERLIKREQ HHIKNSEKRVLARKNLER+IRSQDLARKLKAIL+KKVRG
Sbjct: 55  SGIERLIKREQTHHIKNSEKRVLARKNLERRIRSQDLARKLKAILIKKVRG 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518987|gb|AFK47555.1| unknown [Lotus japonicus]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 90/112 (80%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MNS+ R+L+    + +      +  + Q  Q+QQ RGIRV+VFNGNLE AL+ MQRKM S
Sbjct: 1   MNSIARRLSSLFGKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMTS 60

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           SGIER+IK+EQR HIKNSEKRVLARKNLER++RS+DLARKLKAI++KKVRGL
Sbjct: 61  SGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVRGL 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521069|gb|AFK48596.1| unknown [Lotus japonicus]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 90/112 (80%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MNS+ R+L+    + +      +  + Q  Q+QQ RGIRV+VFNGNLE AL+ MQRKM S
Sbjct: 1   MNSIARRLSNLFGKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMTS 60

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           SGIER+IK+EQR HIKNSEKRVLARKNLER++RS+DLARKLKAI++KKVRGL
Sbjct: 61  SGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVRGL 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568575|ref|XP_003552486.1| PREDICTED: uncharacterized protein LOC100811271 [Glycine max]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 87/112 (77%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MNSV R+L+  +         F+    Q  Q+QQ RGIRVKV  GNLE AL  MQRKMQS
Sbjct: 1   MNSVARRLSSLVRHSGFTPEPFNNGHHQMQQLQQCRGIRVKVMGGNLEAALGLMQRKMQS 60

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           SGIER+IK+EQR HIKNSEKRVLA+KNLERKIRS+DLA+KLKAI++KKVRGL
Sbjct: 61  SGIERMIKQEQRFHIKNSEKRVLAQKNLERKIRSEDLAKKLKAIMIKKVRGL 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722514|ref|NP_001235711.1| uncharacterized protein LOC100500533 [Glycine max] gi|255630575|gb|ACU15647.1| unknown [Glycine max]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 90/118 (76%), Gaps = 12/118 (10%)

Query: 1   MNSVGRQLA------GYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWM 54
           MNSV R+L+      G+  +P      F+    Q  ++QQ RGIRVKV  GNLE AL  M
Sbjct: 1   MNSVARRLSRLFRHSGFTPEP------FNNGHHQMQKLQQCRGIRVKVIGGNLEAALGLM 54

Query: 55  QRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           QRKMQSSGIER+IK+EQR HIKNSEKRVLA+KNLERKIRS+DLARKLKAI++KKVRGL
Sbjct: 55  QRKMQSSGIERMIKQEQRFHIKNSEKRVLAQKNLERKIRSEDLARKLKAIMIKKVRGL 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578365|ref|XP_002530049.1| conserved hypothetical protein [Ricinus communis] gi|223530465|gb|EEF32349.1| conserved hypothetical protein [Ricinus communis]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 6/110 (5%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQR-HQVQQWRGIRVKVFNGNLEQALSWMQRKMQ 59
           MN++ RQ+       +     F+ +  Q  +Q+QQWRGIRVKVF+GNLE+AL+ MQRKMQ
Sbjct: 1   MNTIARQVCAIFKVTN-----FNDSLSQELYQIQQWRGIRVKVFDGNLERALTVMQRKMQ 55

Query: 60  SSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKV 109
           SSGIERLIKREQ HHIKNSEKRVLARK L+ KI+SQ+LARKLK+IL+KKV
Sbjct: 56  SSGIERLIKREQIHHIKNSEKRVLARKRLQHKIQSQELARKLKSILIKKV 105

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464006|ref|XP_004149720.1| PREDICTED: uncharacterized protein LOC101216913 [Cucumis sativus] gi|449512828|ref|XP_004164152.1| PREDICTED: uncharacterized LOC101216913 [Cucumis sativus]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 88/114 (77%), Gaps = 13/114 (11%)

Query: 1   MNSVGRQLAGYL--TQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKM 58
           MNS+ R ++  +  + P+          C +HQ  QWRGIRVKV  G LE+AL+ +QRKM
Sbjct: 1   MNSLARNISCSIRSSIPTN---------CLQHQ--QWRGIRVKVLRGGLERALTVLQRKM 49

Query: 59  QSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           QSSGIERLIKREQ HHIKNSEKRVLARK LERKI+S+DLARKLKAIL+KKVRGL
Sbjct: 50  QSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVRGL 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255434|ref|NP_189267.4| Ribosomal protein S21 family protein [Arabidopsis thaliana] gi|332643628|gb|AEE77149.1| Ribosomal protein S21 family protein [Arabidopsis thaliana]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 89/112 (79%), Gaps = 11/112 (9%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MN++ +++ G +T+PS  LN          Q+QQ RGIRVKVF+ +L++AL+ +Q+KMQS
Sbjct: 1   MNTIAKRVTGLVTRPS--LN---------QQLQQERGIRVKVFSNDLDKALTILQKKMQS 49

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
           SG+ERLIK  Q HHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKVRGL
Sbjct: 50  SGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294294|dbj|BAB02196.1| unnamed protein product [Arabidopsis thaliana]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 87/110 (79%), Gaps = 11/110 (10%)

Query: 1   MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
           MN++ +++ G +T+PS  LN          Q+QQ RGIRVKVF+ +L++AL+ +Q+KMQS
Sbjct: 1   MNTIAKRVTGLVTRPS--LN---------QQLQQERGIRVKVFSNDLDKALTILQKKMQS 49

Query: 61  SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVR 110
           SG+ERLIK  Q HHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKVR
Sbjct: 50  SGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVR 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2079271	101	AT3G26360 [Arabidopsis thalian	0.901	1.0	0.598	1e-27
TIGR_CMR|APH_1051	91	APH_1051 "ribosomal protein S2	0.464	0.571	0.388	8.1e-05
TIGR_CMR|SPO_0229	68	SPO_0229 "ribosomal protein S2	0.535	0.882	0.396	8.1e-05
TIGR_CMR|ECH_0978	90	ECH_0978 "ribosomal protein S2	0.464	0.577	0.351	0.00045

TAIR|locus:2079271 AT3G26360 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 67/112 (59%), Positives = 89/112 (79%)

Query:     1 MNSVGRQLAGYLTQPSQGLNLFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQRKMQS 60
             MN++ +++ G +T+PS  LN          Q+QQ RGIRVKVF+ +L++AL+ +Q+KMQS
Sbjct:     1 MNTIAKRVTGLVTRPS--LN---------QQLQQERGIRVKVFSNDLDKALTILQKKMQS 49

Query:    61 SGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVRGL 112
             SG+ERLIK  Q HHIKNSEK+VLARKNLER+I+S D ARKL++IL+KKVRGL
Sbjct:    50 SGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TIGR_CMR|APH_1051 APH_1051 "ribosomal protein S21" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query:    38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERK 91
             + V V++G++EQ +  +++K+Q  G  R +K    HH K SEKRV  R + ER+
Sbjct:     2 VEVVVYHGDIEQGIRTLKKKLQREGKPRQMKIV--HHEKPSEKRVRKRDDCERR 53

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|SPO_0229 SPO_0229 "ribosomal protein S21" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query:    38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQDL 97
             ++V V + N++QAL  +++K+Q  G+ R +K +Q H  K SEK+  AR+  E   R++ L
Sbjct:     1 MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQ-HFEKPSEKK--AREKAEAIRRARKL 57

Query:    98 ARK 100
             ARK
Sbjct:    58 ARK 60

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|ECH_0978 ECH_0978 "ribosomal protein S21" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query:    38 IRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERK 91
             + V V++G++EQ +  +++K+Q  G  R +K    HH K SEKR   + + ER+
Sbjct:     2 VEVIVYHGDIEQGIRTLKKKLQREGKPRQMKIT--HHEKPSEKRARKKDDCERR 53


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.41    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  117 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.30u 0.09s 14.39t   Elapsed:  00:00:00
  Total cpu time:  14.30u 0.09s 14.39t   Elapsed:  00:00:00
  Start:  Mon May 20 15:02:27 2013   End:  Mon May 20 15:02:27 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011884001 SubName- Full=Chromosome undetermined scaffold_346, whole genome shotgun sequence; (106 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam01165	53	pfam01165, Ribosomal_S21, Ribosomal protein S21	7e-04

>gnl|CDD|201634 pfam01165, Ribosomal_S21, Ribosomal protein S21

 Score = 34.8 bits (81), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 44 NGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLER 90
          N N+E+AL   +RK++ +GI R ++R +R + K SEKR   ++   R
Sbjct: 8  NENIERALRRFKRKVEKNGILRELRR-RRFYEKPSEKRKRKKREARR 53

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
TIGR00030	58	S21p ribosomal protein S21. This model describes b	99.85
PRK00270	64	rpsU 30S ribosomal protein S21; Reviewed	99.82
COG0828	67	RpsU Ribosomal protein S21 [Translation, ribosomal	99.77
PF01165	57	Ribosomal_S21: Ribosomal protein S21; InterPro: IP	99.63

>TIGR00030 S21p ribosomal protein S21

Probab=99.85  E-value=1.6e-21  Score=126.59  Aligned_cols=56  Identities=36%  Similarity=0.489  Sum_probs=52.9

Q ss_pred             eEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754           38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS   94 (112)
Q Consensus        38 i~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk   94 (112)
                      ++|.|+|| |||+||++||++|+++||+.|+|+| +||||||++|+++..+|.+++++
T Consensus         1 ~~V~V~~~e~ie~alrrfkr~~~~~gil~e~r~r-~~yeKPs~krkrk~~~a~rr~~k   57 (58)
T TIGR00030         1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKR-RYYEKPSERRRRKEKAAAKRIRK   57 (58)
T ss_pred             CeeEeCCCCcHHHHHHHHHHHHHHcchHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhc
Confidence            46889998 6999999999999999999999999 99999999999999999999875

This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.

>PRK00270 rpsU 30S ribosomal protein S21; Reviewed

Probab=99.82  E-value=4e-20  Score=122.05  Aligned_cols=57  Identities=30%  Similarity=0.427  Sum_probs=53.7

Q ss_pred             eEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHhH
Q 033754           38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQ   95 (112)
Q Consensus        38 i~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rkq   95 (112)
                      +.|.|+|| |||.||++||++|+++||+.|+|++ +||||||++|+++..+|.++.++.
T Consensus         2 ~~V~V~~~e~ie~Alrrfkr~~~k~gil~e~r~r-~~yekPs~krkrk~~~a~rr~~k~   59 (64)
T PRK00270          2 PQVKVRENESIDKALRRFKRKVEKAGILRELRRR-EFYEKPSEKRKRKKAAARKRRRKK   59 (64)
T ss_pred             CeeEeCCCChHHHHHHHHHHHHHHcchHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHH
Confidence            57889998 6999999999999999999999999 999999999999999999998773

>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=1.2e-18  Score=116.76  Aligned_cols=56  Identities=30%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             eEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754           38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS   94 (112)
Q Consensus        38 i~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk   94 (112)
                      ..|.|++| +||.||++||++++++||+.|++.+ +||||||++++++..+|.++..+
T Consensus         2 ~~v~V~ene~~d~ALrrFKr~~~k~gil~e~k~r-~~yEkPs~krkrK~a~a~kr~~k   58 (67)
T COG0828           2 PQVKVRENEPLDKALRRFKRKVEKEGILREMKER-EFYEKPSEKRKRKKAAARKRKFK   58 (67)
T ss_pred             CeeeecCCChHHHHHHHHHHHHHHHHHHHHHHHH-HhccCchHHHHHHHHHHHHHHHH
Confidence            46788888 5999999999999999999999999 99999999999999999998877

>PF01165 Ribosomal_S21: Ribosomal protein S21; InterPro: IPR001911 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.63  E-value=3.4e-19  Score=113.75  Aligned_cols=56  Identities=34%  Similarity=0.452  Sum_probs=49.3

Q ss_pred             eEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754           38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS   94 (112)
Q Consensus        38 i~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk   94 (112)
                      |+|.|.+| |+|.||++|+++|+++||+.|++.+ +||||||++|+++..++.+++++
T Consensus         1 v~V~V~~~~~~e~Alrr~~r~~~~~gi~~~~r~r-~~yekps~kRkrk~~~~~rr~~k   57 (57)
T PF01165_consen    1 VTVKVRDGEDVERALRRFKRKVRRNGILKELRKR-RFYEKPSEKRKRKRSERWRRRFK   57 (57)
T ss_dssp             ---EEESSSSSSSSSGTTCCTSSTTHHHTTTSSS-B-SSSCCCCTTHCCCCCTHHHHH
T ss_pred             CeeecCCCCCHHHHHHHHHHHHHHcChHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhC
Confidence            67999888 7999999999999999999999999 99999999999999999988764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryote ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S21 contains 55-70 amino acid residues, and has only been found in eubacteria to date, though it has been reported that plant chloroplasts and mammalian mitochondria contain ribosomal subunit protein S21. Experimental evidence has revealed that S21 is well exposed on the surface of the Escherichia coli ribosome [], and is one of the 'split proteins': these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2VHO_U 3J18_U 2AVY_U 3OFO_U 3OFP_U 2WWL_U 3J0X_X 3IZV_Y 3ORA_U 3IZW_Y ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3r8n_U	51	30S ribosomal protein S21; protein biosynthesis, R	99.75
3i1m_U	71	30S ribosomal protein S21; ribosome structure, pro	99.74
3bbn_U	190	Ribosomal protein S21; small ribosomal subunit, sp	99.67

>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ...

Probab=99.74  E-value=5.5e-21  Score=127.84  Aligned_cols=56  Identities=18%  Similarity=0.244  Sum_probs=49.0

Q ss_pred             eEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754           38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS   94 (112)
Q Consensus        38 i~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk   94 (112)
                      ++|.|+|| |||+||++||++|+++||++|+|+| +||||||++|+++..+|+++.++
T Consensus         2 ~~V~V~enE~ie~ALRrfKR~~~k~Gil~e~Rrr-~~yEKPs~kRkrk~~~a~kR~~k   58 (71)
T 3i1m_U            2 PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRR-EFYEKPTTERKRAKASAVKRHAK   58 (71)
T ss_dssp             --CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSC-CCSSSHHHHHHHHHHTSCC----
T ss_pred             CeeEeCCCCCHHHHHHHHHHHHHHccHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHH
Confidence            46889998 9999999999999999999999999 99999999999999999998876

>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.67  E-value=3.4e-19  Score=137.67  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             ceEEEecCC-CHHHHHHHHHHhHhhhhhHHHHHhhhcccCCchHHHHHHHHHHHHHHHh
Q 033754           37 GIRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS   94 (112)
Q Consensus        37 gi~V~V~~g-~IE~ALRrfKRk~~keGIl~eiK~R~~~YeKPSekRrrk~~ea~rR~rk   94 (112)
                      .++|.|+|| +||+|||+|||+|+++||++|+|+| +||||||++|+++..+|++|.++
T Consensus        96 M~~V~VkeNE~iE~ALRRFKRkveKeGIlrElRrR-r~YEKPSeKRKRK~~eA~rR~rK  153 (190)
T 3bbn_U           96 NVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRR-RFFENTQDVRKRKTREAAKRNRR  153 (190)
T ss_dssp             -CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSC-CCTTTTTTHHHHHHHHTTC----
T ss_pred             ccEEEecCCCCHHHHHHHHHHHHHHccHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHH
Confidence            578899987 9999999999999999999999999 99999999999999999999888

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00