Citrus Sinensis ID: 033819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccEEEEEccccEEEEcccccccccccccccccHHHHHccccccEEcccccccccccccccccccccccEEEccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccEEEEccEEEEEcccccccccccccccccccccccccHHHHHHEEccccccccccccccccEEEEEEEEEcccccccccccEEEEEccc
Coil and Loop (DISEMBL)
MASIKLCNFVLLLLLVQLLAPAYvvvqgsrtqvgiphhqsfspsspvhfkesskaKVMNRNsrrlmigstaptctynecrgckykcraeqvpvegndpinsayhykcvchr
Flexible Loop (DISEMBL)
MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIphhqsfspsspvhfkesskakvmnrnsrrlmigstaptctyneCRGCKYKCRAeqvpvegndpinsayhykcvchr
Low Complexity Region (SEG)
MASIKLCNFvlllllvqllapayvvvqGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Disordered region (IsUnstruct)
***IKLCNFVLLLLLVQLLAPAYVVVQGSRTQVG******************************LMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVC**
Disordered Region (DISOPRED)
****KLCNFVLLLLLVQLLAPAYVVVQGSR***********************************MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Disordered Region (DISEMBL)
MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPH*******************VMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Disordered Region (DISPRO)
**SIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPH************************S***MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9SV72	102	EPIDERMAL PATTERNING FACT	yes	no	0.441	0.480	0.938	9e-23

>sp|Q9SV72|EPFL9_ARATH EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana GN=EPFL9 PE=1 SV=1

 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 48/49 (97%)

Query: 63  RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 54  RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

Controls stomatal patterning.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
224065439	107	predicted protein [Populus trichocarpa]	0.936	0.971	0.631	3e-30
255584657	107	conserved hypothetical protein [Ricinus	0.792	0.822	0.688	2e-28
363806730	176	uncharacterized protein LOC100807266 [Gl	0.954	0.602	0.612	3e-28
357504971	107	EPIDERMAL PATTERNING FACTOR-like protein	0.792	0.822	0.666	4e-26
297790630	102	hypothetical protein ARALYDRAFT_497108 [	0.882	0.960	0.567	2e-23
449463202	113	PREDICTED: EPIDERMAL PATTERNING FACTOR-l	0.756	0.743	0.640	4e-23
330318758	122	hypothetical protein [Camellia sinensis]	0.576	0.524	0.765	2e-22
15235542	102	epidermal patterning factor-like protein	0.441	0.480	0.938	4e-21
115441801	123	Os01g0914400 [Oryza sativa Japonica Grou	0.639	0.577	0.607	4e-20
242055363	123	hypothetical protein SORBIDRAFT_03g04362	0.738	0.666	0.528	1e-19

>gi|224065439|ref|XP_002301818.1| predicted protein [Populus trichocarpa] gi|222843544|gb|EEE81091.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 86/114 (75%), Gaps = 10/114 (8%)

Query: 1   MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNR 60
           MA+ +LC ++L LL   +LA    V+QGSR Q  +P+HQS S  S    +E S+A   N 
Sbjct: 1   MANTRLC-YLLSLLFTFILAA--FVIQGSRNQELLPYHQSISTPS----QEDSQALGGNE 53

Query: 61  ---NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
              +S+RLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPI+SAYHYKC+CHR
Sbjct: 54  EQMSSKRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPIHSAYHYKCICHR 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584657|ref|XP_002533051.1| conserved hypothetical protein [Ricinus communis] gi|223527149|gb|EEF29321.1| conserved hypothetical protein [Ricinus communis]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 71/90 (78%), Gaps = 2/90 (2%)

Query: 22  AYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRG 81
           A  V+QGSRTQ  +P     S  +P + +  S+    ++NS+RLMIGSTAPTCTYNECRG
Sbjct: 20  AAYVIQGSRTQELLPSQPRTS--APPNLQGDSEGGQTSKNSKRLMIGSTAPTCTYNECRG 77

Query: 82  CKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           CKYKCRAEQVPVEGNDPINSAYHYKCVCHR
Sbjct: 78  CKYKCRAEQVPVEGNDPINSAYHYKCVCHR 107

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806730|ref|NP_001242272.1| uncharacterized protein LOC100807266 [Glycine max] gi|255640720|gb|ACU20644.1| unknown [Glycine max]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 77/111 (69%), Gaps = 5/111 (4%)

Query: 1   MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNR 60
           M   KL   V LLL   +LA  +   QG RT+  +   QS  P      ++ ++A  M R
Sbjct: 71  MRGTKLPEVVFLLLFTLILASKFT--QGIRTEESVS--QSPQPQREPSLEDGNEAWKM-R 125

Query: 61  NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINS YHY+CVCHR
Sbjct: 126 NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSPYHYRCVCHR 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504971|ref|XP_003622774.1| EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula] gi|355497789|gb|AES78992.1| EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 22  AYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRG 81
           A  V+QG  T+  I   QS  P   +  K S       RNSRRLMIGSTAPTCTYNECRG
Sbjct: 19  AAKVIQGIETKGWI--SQSSQPQRELSLKGSINEAWKQRNSRRLMIGSTAPTCTYNECRG 76

Query: 82  CKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           CKY+CRAEQVPVEGNDPINS YHY+CVCHR
Sbjct: 77  CKYRCRAEQVPVEGNDPINSPYHYRCVCHR 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790630|ref|XP_002863200.1| hypothetical protein ARALYDRAFT_497108 [Arabidopsis lyrata subsp. lyrata] gi|297309034|gb|EFH39459.1| hypothetical protein ARALYDRAFT_497108 [Arabidopsis lyrata subsp. lyrata]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 71/111 (63%), Gaps = 13/111 (11%)

Query: 1   MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNR 60
           M + KL    +  LL  L+   YVV Q SR +       + S  S VH + S        
Sbjct: 5   MMNFKLRCITIFFLLFALVLGNYVV-QASRPR---SIENTVSLLSQVHLQNSR------- 53

Query: 61  NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
             RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 54  --RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463202|ref|XP_004149323.1| PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9-like [Cucumis sativus]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 66/89 (74%), Gaps = 5/89 (5%)

Query: 24  VVVQGSRTQV-GIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRGC 82
           + VQG  T+   +P   S  P+  +   E  K ++  R  RR+MIGSTAPTCTYNECRGC
Sbjct: 29  MAVQGFSTRDRPVPQFSSLQPT--ILPLEGRKERL--RKWRRVMIGSTAPTCTYNECRGC 84

Query: 83  KYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           KYKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 85  KYKCRAEQVPVEGNDPINSAYHYRCVCHR 113

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318758|gb|AEC11039.1| hypothetical protein [Camellia sinensis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 54/64 (84%)

Query: 48  HFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKC 107
           +F      K   +++RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPI+S YHYKC
Sbjct: 59  NFTSREAVKNGKQSARRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPISSPYHYKC 118

Query: 108 VCHR 111
           VCHR
Sbjct: 119 VCHR 122

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235542|ref|NP_193033.1| epidermal patterning factor-like protein 9 [Arabidopsis thaliana] gi|75210732|sp|Q9SV72.1|EPFL9_ARATH RecName: Full=EPIDERMAL PATTERNING FACTOR-like protein 9; Short=EPF-like protein 9; Flags: Precursor gi|5123938|emb|CAB45496.1| putative protein [Arabidopsis thaliana] gi|7267999|emb|CAB78339.1| putative protein [Arabidopsis thaliana] gi|51969894|dbj|BAD43639.1| putative protein [Arabidopsis thaliana] gi|332657809|gb|AEE83209.1| epidermal patterning factor-like protein 9 [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 48/49 (97%)

Query: 63  RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 54  RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441801|ref|NP_001045180.1| Os01g0914400 [Oryza sativa Japonica Group] gi|56784933|dbj|BAD82391.1| unknown protein [Oryza sativa Japonica Group] gi|113534711|dbj|BAF07094.1| Os01g0914400 [Oryza sativa Japonica Group] gi|215693182|dbj|BAG88564.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189593|gb|EEC72020.1| hypothetical protein OsI_04900 [Oryza sativa Indica Group] gi|222619746|gb|EEE55878.1| hypothetical protein OsJ_04524 [Oryza sativa Japonica Group]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 8/79 (10%)

Query: 38  HQSFSPSSPVHFKESSKAKVMNRN-----SRRLMIGSTAPTCTYNECRGCKYKCRAEQVP 92
           HQ+  P   +H +E+   KV+N+      +RR++IGSTAP CTYNECRGC++KC AEQVP
Sbjct: 48  HQTL-PEEHIHLQEN--IKVLNKERLPKYARRMLIGSTAPICTYNECRGCRFKCTAEQVP 104

Query: 93  VEGNDPINSAYHYKCVCHR 111
           V+ NDP+NSAYHYKCVCHR
Sbjct: 105 VDANDPMNSAYHYKCVCHR 123

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055363|ref|XP_002456827.1| hypothetical protein SORBIDRAFT_03g043620 [Sorghum bicolor] gi|241928802|gb|EES01947.1| hypothetical protein SORBIDRAFT_03g043620 [Sorghum bicolor]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 64/87 (73%), Gaps = 5/87 (5%)

Query: 28  GSRTQVGIPHHQSFSPSSPVHFKESSKA---KVMNRNSRRLMIGSTAPTCTYNECRGCKY 84
           G+ + V  PH +   P+  +  +E+ K     ++++ +RR++IGS AP CTYNECRGC++
Sbjct: 39  GADSVVQYPHQEL--PAKHIVLQEAVKGLNKGILSKYTRRMLIGSIAPICTYNECRGCRF 96

Query: 85  KCRAEQVPVEGNDPINSAYHYKCVCHR 111
           KC AEQVPV+ NDP+NSAYHYKCVCHR
Sbjct: 97  KCTAEQVPVDANDPMNSAYHYKCVCHR 123

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2123261	102	STOMAGEN "AT4G12970" [Arabidop	0.459	0.5	0.923	6.8e-24

TAIR|locus:2123261 STOMAGEN "AT4G12970" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 48/52 (92%), Positives = 50/52 (96%)

Query:    61 NSRRL-MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
             NSRR  MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct:    51 NSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111        93   0.00091  102 3  11 22  0.47    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  545 (58 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.05u 0.18s 11.23t   Elapsed:  00:00:01
  Total cpu time:  11.05u 0.18s 11.23t   Elapsed:  00:00:01
  Start:  Fri May 10 04:58:32 2013   End:  Fri May 10 04:58:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0010375 "stomatal complex patterning" evidence=IMP;IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:2000123 "positive regulation of stomatal complex development" evidence=IDA

GO:2000038 "regulation of stomatal complex development" evidence=IMP

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SV72	EPFL9_ARATH	No assigned EC number	0.9387	0.4414	0.4803	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002553 hypothetical protein (107 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
PLN03207	113	PLN03207, PLN03207, stomagen; Provisional	5e-45

>gnl|CDD|215632 PLN03207, PLN03207, stomagen; Provisional

 Score =  141 bits (356), Expect = 5e-45
 Identities = 66/111 (59%), Positives = 75/111 (67%), Gaps = 3/111 (2%)

Query: 1   MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNR 60
           M +   C  +  LL   LL     V+QGSR Q  +P+ QS S       K  +   +   
Sbjct: 6   MTATTRCLTLFFLLFFLLLGAY--VIQGSRNQSILPYDQSISYPHQETVKLLNGGHLSK- 62

Query: 61  NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           +SRRLMIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHYKCVCHR
Sbjct: 63  SSRRLMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113

Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PLN03207	113	stomagen; Provisional	100.0

>PLN03207 stomagen; Provisional

Probab=100.00  E-value=2.8e-55  Score=319.29  Aligned_cols=105  Identities=59%  Similarity=1.008  Sum_probs=94.9

Q ss_pred             chhhHHHHHHHHHHHhhcccceeeecCccccccccccccCCCCCcccccchhhhhccccccceecccCCCccccccccCc
Q 033819            3 SIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNRNSRRLMIGSTAPTCTYNECRGC   82 (111)
Q Consensus         3 n~kl~~~~~Ll~~~il~~~Aa~viqgs~t~e~~p~~~s~s~~~q~~~~~~~~gg~~~~~~rr~miGStAPtCTYNECRgC   82 (111)
                      .++.+.+|||||+|||   |++|+||+|+++++|++++.+.++|... +.+.|+..++++||+||||+||||||||||||
T Consensus         9 tt~~~~lffLl~~lll---a~~v~qgsr~~~~~~~~~~~s~~~q~~~-~~l~g~~~~k~srr~~igs~aptctynecrgc   84 (113)
T PLN03207          9 TTRCLTLFFLLFFLLL---GAYVIQGSRNQSILPYDQSISYPHQETV-KLLNGGHLSKSSRRLMIGSTAPTCTYNECRGC   84 (113)
T ss_pred             cchhHHHHHHHHHHHH---HHHHHhccccccccCcccccccCchhcc-ccccccccchhhhhhhhcCcCCccccccccCc
Confidence            3556777888888889   9999999999999999999998886544 44556677889999999999999999999999


Q ss_pred             cccccceeecccCCCCCCCcceeeeccCC
Q 033819           83 KYKCRAEQVPVEGNDPINSAYHYKCVCHR  111 (111)
Q Consensus        83 k~kC~aeqVPv~~ndP~nSayhy~cvchr  111 (111)
                      ||||+||||||||||||||||||+|||||
T Consensus        85 r~kc~~eqvpv~~~dp~nsayhy~cvchR  113 (113)
T PLN03207         85 RYKCRAEQVPVEGNDPINSAYHYKCVCHR  113 (113)
T ss_pred             cccccceeccccCCCCCccccccccCCCC
Confidence            99999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
2liy_A	45	Plant Peptide Hormone Regulating Stomatal Density L		3e-21

>pdb|2LIY|A Chain A, Plant Peptide Hormone Regulating Stomatal Density Length = 45

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/45 (95%), Positives = 45/45 (100%)
Query: 67  IGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           IGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 1   IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2liy_A	45	Epidermal patterning factor-like protein 9; plant	100.0

>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=9.5e-41  Score=211.52  Aligned_cols=45  Identities=96%  Similarity=1.807  Sum_probs=44.5

Q ss_pred             cccCCCccccccccCccccccceeecccCCCCCCCcceeeeccCC
Q 033819           67 IGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR  111 (111)
Q Consensus        67 iGStAPtCTYNECRgCk~kC~aeqVPv~~ndP~nSayhy~cvchr  111 (111)
                      |||+|||||||||||||++|+||||||||||||||||||+|||||
T Consensus         1 igS~APtCTYNECrgCr~~C~aeqvPvd~~dP~~SAYhY~CvChr   45 (45)
T 2liy_A            1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR   45 (45)
T ss_dssp             CCSCTTTTCGGGGTTCCSEEEEEEEESSCSSSCSCCEEEEEEEEC
T ss_pred             CCccCCceeehhhcCcccccceeeccccCCCcccchheeEeEecC
Confidence            899999999999999999999999999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00