Citrus Sinensis ID: 033870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
masnrghggIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAessgdsganvkRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Flexible Loop (DISEMBL)
MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKlaessgdsganvkRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Low Complexity Region (SEG)
MASNRGHGGIqqllaaeqeaqHIVAAARNAKMARLrqakeeaereiaehraQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Disordered region (IsUnstruct)
********************************************************************************VKIHHLNAGAEKIQYDVVQMLLKHVT****
Disordered Region (DISOPRED)
************LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVERE***************************************DVVQMLLKHVTTVKN
Disordered Region (DISEMBL)
*********IQQLLAAEQEAQHIVAAAR*******************EHRAQVER****************VKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Disordered Region (DISPRO)
*******GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE******ANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASNRGHGGIQQLLAAEQEAQHIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9SP55	110	V-type proton ATPase subu	N/A	no	1.0	1.0	0.936	2e-52
O82628	110	V-type proton ATPase subu	yes	no	1.0	1.0	0.754	7e-34
O82629	106	V-type proton ATPase subu	no	no	0.936	0.971	0.689	2e-32
O82702	110	V-type proton ATPase subu	N/A	no	1.0	1.0	0.736	8e-32
O82703	111	V-type proton ATPase subu	N/A	no	1.0	0.990	0.702	2e-28
Q9SZH0	108	V-type proton ATPase subu	no	no	0.963	0.981	0.518	2e-25
Q9CR51	118	V-type proton ATPase subu	yes	no	0.918	0.855	0.415	1e-09
O75348	118	V-type proton ATPase subu	yes	no	0.918	0.855	0.405	1e-09
Q8BMC1	118	V-type proton ATPase subu	no	no	0.918	0.855	0.396	2e-09
P79251	118	V-type proton ATPase subu	yes	no	0.918	0.855	0.386	4e-09

>sp|Q9SP55|VATG_CITLI V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/110 (93%), Positives = 105/110 (95%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M SNRG GGIQQLLAAEQEAQHIVAAARNAKMARL+QAKEEAEREIAE+RAQVEREFQRK
Sbjct: 1   MTSNRGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           LAES GDSGANVKRLEQETEVKIHHL AGAEKIQYDVVQM LKHVTTVKN
Sbjct: 61  LAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus limon (taxid: 2708)

>sp|O82628|VAGT1_ARATH V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1

 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 93/110 (84%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M SNRG G IQQLLAAE EAQHIV AAR AKMARL+QAKEEAE+EIAE++AQ E++FQRK
Sbjct: 1   MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           L E+SGDSGANVKRLEQET+ KI  L   A +I  DVV+MLLKHVTTVKN
Sbjct: 61  LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O82629|VATG2_ARATH V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=3 SV=2

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 80/103 (77%)

Query: 8   GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD 67
            GIQQLLAAE+EAQ IV AAR AKM RL+QAKEEAE E+AEH+   E+ FQRKL  +SGD
Sbjct: 4   AGIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGD 63

Query: 68  SGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           SGANVKRLEQET+ KI  L   A +I  DVV MLLK+VTTV N
Sbjct: 64  SGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O82702|VATG1_TOBAC V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 91/110 (82%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           MAS+ G  GIQ LLAAEQEAQHIV  AR AK ARL+QAKEEAE+EIAE RA +E EFQRK
Sbjct: 1   MASSSGQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           L ++SGDSGANVKRLEQET+ KI HL   AE++  DVVQMLL+HVTTVKN
Sbjct: 61  LEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

>sp|O82703|VATG2_TOBAC V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 1   MASNRG-HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59
           M SNRG   GIQ LL AEQEAQHIV AAR  K AR++QAKEEAE+EIAE RA +E EFQR
Sbjct: 1   MESNRGSQNGIQLLLGAEQEAQHIVNAARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQR 60

Query: 60  KLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
            + ++SGDSGANVKRLEQET  KI HL   AE I +DVVQMLL+ VTTVKN
Sbjct: 61  NVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

>sp|Q9SZH0|VATG3_ARATH V-type proton ATPase subunit G3 OS=Arabidopsis thaliana GN=VHA-G3 PE=3 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 81/108 (75%), Gaps = 2/108 (1%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M S RG GGIQ LL AEQEA  IV+AAR AK+AR++QAK+EAE+E+ E+R+++E E+Q +
Sbjct: 1   MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQ 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTV 108
           +  S  D  A+ KRL+ ET+V+I +L   + K+  D+V+ML+K+VTT 
Sbjct: 61  V--SGTDQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTTT 106

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CR51|VATG1_MOUSE V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=2 SV=3

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 61/101 (60%)

Query: 9   GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS 68
           GIQQLL AE+ A   V+ AR  K  RL+QAKEEA+ EI ++R Q E+EF+ K A + G  
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSH 66

Query: 69  GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVK 109
           G+    +E+ET  K+  L    E+ + +V+  LL  V  ++
Sbjct: 67  GSCSSEVEKETREKMTVLQNYFEQNRDEVLDNLLAFVCDIR 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|O75348|VATG1_HUMAN V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 61/101 (60%)

Query: 9   GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS 68
           GIQQLL AE+ A   V+ AR  K  RL+QAKEEA+ EI ++R Q E+EF+ K A + G  
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSR 66

Query: 69  GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVK 109
           G+    +E+ET+ K+  L     + + +V+  LL  V  ++
Sbjct: 67  GSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIR 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q8BMC1|VATG3_MOUSE V-type proton ATPase subunit G 3 OS=Mus musculus GN=Atp6v1g3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 57/101 (56%)

Query: 9   GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS 68
           GIQQLL AE+ A+  +  A+  K  RLRQAKEEA  E  ++R Q+E++F+ K A+  G  
Sbjct: 7   GIQQLLQAEKRAKDKLDEAKKRKGKRLRQAKEEAVAETDQYRMQMEKDFRLKQAKIMGSQ 66

Query: 69  GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVK 109
                 +E++T  KI  LN    K    V++ LL  V  +K
Sbjct: 67  SHLSDEIEEQTLEKIKELNGSYNKCMESVIKQLLSMVCDMK 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|P79251|VATG1_BOVIN V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 62/101 (61%)

Query: 9   GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS 68
           GIQQLL AE+ A   V+ AR  K  RL+QAKEEA+ E+ ++R Q E+EF+ K A + G  
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEVEQYRLQREKEFKAKEAAALGSH 66

Query: 69  GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVK 109
           G+    +E++T+ K+  L    ++ + +V+  LL  V  ++
Sbjct: 67  GSCSTEVEKDTQEKMTILQTYFQQNRDEVLDNLLAFVCDIR 107

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
12585491	110	RecName: Full=V-type proton ATPase subun	1.0	1.0	0.936	7e-51
225439976	110	PREDICTED: V-type proton ATPase subunit	1.0	1.0	0.809	2e-41
255577397	110	vacuolar ATP synthase subunit G plant, p	1.0	1.0	0.772	1e-39
224113019	110	predicted protein [Populus trichocarpa]	1.0	1.0	0.790	1e-39
284433762	110	vacuolar ATP synthase subunit G1 [Jatrop	1.0	1.0	0.772	4e-39
224097953	110	predicted protein [Populus trichocarpa]	1.0	1.0	0.772	2e-38
226506294	110	vacuolar ATP synthase subunit G [Zea may	1.0	1.0	0.772	2e-38
351723231	110	uncharacterized protein LOC100499803 [Gl	1.0	1.0	0.736	3e-38
194704416	110	unknown [Zea mays]	1.0	1.0	0.772	6e-38
118482360	110	unknown [Populus trichocarpa]	1.0	1.0	0.763	6e-38

>gi|12585491|sp|Q9SP55.1|VATG_CITLI RecName: Full=V-type proton ATPase subunit G; Short=V-ATPase subunit G; AltName: Full=Vacuolar proton pump subunit G gi|5917785|gb|AAD56039.1| vacuolar membrane ATPase subunit G [Citrus limon]

 Score =  204 bits (518), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/110 (93%), Positives = 105/110 (95%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M SNRG GGIQQLLAAEQEAQHIVAAARNAKMARL+QAKEEAEREIAE+RAQVEREFQRK
Sbjct: 1   MTSNRGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           LAES GDSGANVKRLEQETEVKIHHL AGAEKIQYDVVQM LKHVTTVKN
Sbjct: 61  LAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439976|ref|XP_002281146.1| PREDICTED: V-type proton ATPase subunit G [Vitis vinifera] gi|297741597|emb|CBI32729.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 98/110 (89%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M S+RG GGIQQLLAAEQEAQHIV AAR+AKMARL+QAKEEAE+EIA +RAQVE EFQ+K
Sbjct: 1   MESSRGPGGIQQLLAAEQEAQHIVNAARSAKMARLKQAKEEAEKEIAAYRAQVELEFQKK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           LAESSGDSGANVKRLEQET+ KIHHL   A +I +DVV MLLKHVTTVKN
Sbjct: 61  LAESSGDSGANVKRLEQETQAKIHHLKTEAGRISHDVVHMLLKHVTTVKN 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577397|ref|XP_002529578.1| vacuolar ATP synthase subunit G plant, putative [Ricinus communis] gi|223530954|gb|EEF32812.1| vacuolar ATP synthase subunit G plant, putative [Ricinus communis]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 94/110 (85%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M SNRG  GIQ LLAAEQEAQHIV AAR+ KMARL+QAKEEAE++IA  RA +E EFQRK
Sbjct: 1   MDSNRGQNGIQLLLAAEQEAQHIVNAARSQKMARLKQAKEEAEKDIAAFRAHMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           +AESSGDSGANVKRLEQET+ KIHHL   A +I YDVVQMLLKHVT+VKN
Sbjct: 61  VAESSGDSGANVKRLEQETDTKIHHLKIEASRISYDVVQMLLKHVTSVKN 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113019|ref|XP_002316363.1| predicted protein [Populus trichocarpa] gi|222865403|gb|EEF02534.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 94/110 (85%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M +NRG  GIQ LLA EQEAQHIV AARN KMARL+QAKEEA++EIAE RAQ+E EFQRK
Sbjct: 1   MEANRGQNGIQLLLAVEQEAQHIVNAARNEKMARLKQAKEEADKEIAEFRAQMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           LAESSGDSGANVKRLEQETE KI HL   A +I +DVVQMLLKHVTTVKN
Sbjct: 61  LAESSGDSGANVKRLEQETEAKIGHLKKEAARISHDVVQMLLKHVTTVKN 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433762|gb|ADB85087.1| vacuolar ATP synthase subunit G1 [Jatropha curcas] gi|315937278|gb|ADU56190.1| hypothetical protein [Jatropha curcas]

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 94/110 (85%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M +NRG  GIQ LLAAEQEAQHIV AAR+AKMARL+QAKEEAE++IAE RA VE +FQRK
Sbjct: 1   MDANRGQNGIQLLLAAEQEAQHIVNAARSAKMARLKQAKEEAEKDIAEFRAHVEAQFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           +AESSGDSGANVKRLEQETE KIHHL   A +I +DVV MLLK VTTVKN
Sbjct: 61  VAESSGDSGANVKRLEQETETKIHHLKTEASRISHDVVHMLLKQVTTVKN 110

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097953|ref|XP_002311097.1| predicted protein [Populus trichocarpa] gi|118485575|gb|ABK94639.1| unknown [Populus trichocarpa] gi|222850917|gb|EEE88464.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 91/110 (82%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M +NRG  GIQ LLAAEQEAQHIV  ARNAKMARLRQAKEEA++EIAE RA +E EFQRK
Sbjct: 1   MEANRGQNGIQLLLAAEQEAQHIVNTARNAKMARLRQAKEEADKEIAEFRAHMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           L ESSGDSGANVKRLE ETE KI HL   A +I +DVVQMLLKHVT VKN
Sbjct: 61  LTESSGDSGANVKRLEHETEAKIGHLKTEASRISHDVVQMLLKHVTAVKN 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226506294|ref|NP_001148924.1| vacuolar ATP synthase subunit G [Zea mays] gi|194698724|gb|ACF83446.1| unknown [Zea mays] gi|195623340|gb|ACG33500.1| vacuolar ATP synthase subunit G [Zea mays] gi|414588942|tpg|DAA39513.1| TPA: Vacuolar ATP synthase subunit G isoform 1 [Zea mays] gi|414588943|tpg|DAA39514.1| TPA: Vacuolar ATP synthase subunit G isoform 2 [Zea mays]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 92/110 (83%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M +NR  GGIQQLLAAEQEAQ IV AAR AK ARLRQAKEEAEREIAE+RAQ+E EFQRK
Sbjct: 1   MDANRRQGGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           +AESSGDSGANVKRLE+ET  KI  LN  A  I  DV+QMLL+HVTTVKN
Sbjct: 61  VAESSGDSGANVKRLEEETTAKIEQLNQQAASISPDVIQMLLRHVTTVKN 110

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723231|ref|NP_001236248.1| uncharacterized protein LOC100499803 [Glycine max] gi|255626761|gb|ACU13725.1| unknown [Glycine max]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 96/110 (87%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           MASNRG GGIQQLLAAEQEAQ IV AA+N K+ARL+QAKEEAE+EIA++RAQ+E EFQ+K
Sbjct: 1   MASNRGQGGIQQLLAAEQEAQRIVNAAKNEKLARLKQAKEEAEKEIAQYRAQLEAEFQKK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           +++S+GDSGANVKRLEQET+ KI HL   A +I  DVV MLLKHVT+VKN
Sbjct: 61  VSDSTGDSGANVKRLEQETDEKIQHLKTEAARISDDVVAMLLKHVTSVKN 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194704416|gb|ACF86292.1| unknown [Zea mays]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 92/110 (83%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M +NR  GGIQQLLAAEQEAQ IV AAR AK ARLRQAKEEAEREIAE+RAQ+E EFQRK
Sbjct: 1   MDANRRQGGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           +AESSGDSGANVKRLE+ET  KI  LN  A  I  DV+QMLL+HVTTVKN
Sbjct: 61  VAESSGDSGANVKRLEEETTAKIEQLNQQAASIFPDVIQMLLRHVTTVKN 110

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482360|gb|ABK93103.1| unknown [Populus trichocarpa]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 91/110 (82%)

Query: 1   MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           M +NRG  GIQ LLAAEQEAQHIV  ARNAKMARLRQAKEEA++EIAE RA +E EFQRK
Sbjct: 1   MEANRGQNGIQLLLAAEQEAQHIVNTARNAKMARLRQAKEEADKEIAEFRAHMEAEFQRK 60

Query: 61  LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
           L ESSGDSGANVKRLE ET+ KI HL   A +I +DVVQMLLKHVT VKN
Sbjct: 61  LTESSGDSGANVKRLEHETKAKIGHLKTEASRISHDVVQMLLKHVTAVKN 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2096682	110	VMA10 "vacuolar membrane ATPas	1.0	1.0	0.554	4.2e-24
TAIR|locus:2128499	106	VAG2 "vacuolar ATP synthase su	0.927	0.962	0.490	4.1e-17
TAIR|locus:2120790	108	VATG3 "vacuolar ATP synthase G	0.954	0.972	0.364	1.2e-12

TAIR|locus:2096682 VMA10 "vacuolar membrane ATPase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 61/110 (55%), Positives = 67/110 (60%)

Query:     1 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRK 60
             M SNRG G I           HIV AAR AKMARL                Q E++FQRK
Sbjct:     1 MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query:    61 LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
             L E+SGDSGANVKRLEQET+ KI  L   A +I  DVV+MLLKHVTTVKN
Sbjct:    61 LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0000325 "plant-type vacuole" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=ISS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128499 VAG2 "vacuolar ATP synthase subunit G2" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 50/102 (49%), Positives = 55/102 (53%)

Query:     9 GIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDS 68
             GI            IV AAR AKM RL                  E+ FQRKL  +SGDS
Sbjct:     5 GIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDS 64

Query:    69 GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110
             GANVKRLEQET+ KI  L   A +I  DVV MLLK+VTTV N
Sbjct:    65 GANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2120790 VATG3 "vacuolar ATP synthase G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/107 (36%), Positives = 58/107 (54%)

Query:     1 MASNRGHGGIXXXXXXXXXXXHIVAAARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRK 60
             M S RG GGI            IV+AAR AK+AR+                ++E E+Q +
Sbjct:     1 MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQ 60

Query:    61 LAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTT 107
             +  S  D  A+ KRL+ ET+V+I +L   + K+  D+V+ML+K+VTT
Sbjct:    61 V--SGTDQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTT 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110        83   0.00091  102 3  10 23  0.43    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  484 (52 KB)
  Total size of DFA:  104 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.32u 0.15s 12.47t   Elapsed:  00:00:01
  Total cpu time:  12.32u 0.15s 12.47t   Elapsed:  00:00:01
  Start:  Fri May 10 06:45:26 2013   End:  Fri May 10 06:45:27 2013

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SP55	VATG_CITLI	No assigned EC number	0.9363	1.0	1.0	N/A	no
O75348	VATG1_HUMAN	No assigned EC number	0.4059	0.9181	0.8559	yes	no
Q54Z13	VATG_DICDI	No assigned EC number	0.3238	0.9545	0.9813	yes	no
P91303	VATG_CAEEL	No assigned EC number	0.3267	0.9181	0.8015	yes	no
P79251	VATG1_BOVIN	No assigned EC number	0.3861	0.9181	0.8559	yes	no
O82702	VATG1_TOBAC	No assigned EC number	0.7363	1.0	1.0	N/A	no
O82703	VATG2_TOBAC	No assigned EC number	0.7027	1.0	0.9909	N/A	no
O82628	VAGT1_ARATH	No assigned EC number	0.7545	1.0	1.0	yes	no
Q9XZH6	VATG_DROME	No assigned EC number	0.34	0.9090	0.8547	yes	no
Q9CR51	VATG1_MOUSE	No assigned EC number	0.4158	0.9181	0.8559	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
pfam03179	105	pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subu	3e-34
TIGR01147	113	TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, su	3e-12
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
PTZ00491	850	PTZ00491, PTZ00491, major vault protein; Provision	0.004

>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit

 Score =  113 bits (286), Expect = 3e-34
 Identities = 56/105 (53%), Positives = 66/105 (62%)

Query: 5   RGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES 64
               GIQQLL AE+EA  IV  AR  +  RL+QAKEEAE+EI E+RAQ E EF+   AE 
Sbjct: 1   SQSQGIQQLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEH 60

Query: 65  SGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVK 109
           SG  G   K++E+ETE KI  L     K +  VVQMLL  VT VK
Sbjct: 61  SGSRGELEKKIEKETEEKIDELKRSFNKNKEAVVQMLLSKVTDVK 105

This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation. Length = 105

>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G

 Score = 57.9 bits (140), Expect = 3e-12
 Identities = 40/101 (39%), Positives = 62/101 (61%)

Query: 9   GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS 68
           GIQQLL AE+ A   V+ AR  K  RL+QAKEEA++E+ +++ Q E+EF+   A+  G +
Sbjct: 7   GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGN 66

Query: 69  GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTTVK 109
           GA  ++ E ET+ KI  +    +K +  V++ LL  V  + 
Sbjct: 67  GAAEEKAEAETQAKIREIKKAVQKNKDAVIKDLLHLVCDIS 107

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system [Energy metabolism, ATP-proton motive force interconversion]. Length = 113

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGA 70
           ++  AE+EA+ I+  A+    A  ++A  EA+ EI + R + E+E + +  E       
Sbjct: 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE------- 83

Query: 71 NVKRLEQETEVKIHHLN 87
           +++LE+    K  +L+
Sbjct: 84 -LQKLEKRLLQKEENLD 99

Length = 520

>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 16/87 (18%)

Query: 25  AAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL---------AESSGDSGANVK-- 73
           AAAR+      ++A+   ER+    +A+ E + + KL          ESSG S A     
Sbjct: 666 AAARHQAELLEQEARGRLERQKMHDKAKAEEQ-RTKLLELQAESAAVESSGQSRAEALAE 724

Query: 74  ----RLEQETEVKIHHLNAGAEKIQYD 96
                +E E EV+   L A A +I+ +
Sbjct: 725 AEARLIEAEAEVEQAELRAKALRIEAE 751

Length = 850

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	100.0
KOG1772	108	consensus Vacuolar H+-ATPase V1 sector, subunit G	100.0
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	99.97
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	98.2
PRK08404	103	V-type ATP synthase subunit H; Validated	97.88
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.67
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	96.67
PRK09173	159	F0F1 ATP synthase subunit B; Validated	96.62
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	96.43
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	96.38
CHL00019	184	atpF ATP synthase CF0 B subunit	96.38
PRK07352	174	F0F1 ATP synthase subunit B; Validated	96.2
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	96.18
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	96.08
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	95.97
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	95.95
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	95.94
PRK01558	198	V-type ATP synthase subunit E; Provisional	95.94
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	95.88
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	95.86
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	95.76
PRK01194	185	V-type ATP synthase subunit E; Provisional	95.68
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	95.68
PRK00106	535	hypothetical protein; Provisional	95.68
PRK03963	198	V-type ATP synthase subunit E; Provisional	95.67
PRK02292	188	V-type ATP synthase subunit E; Provisional	95.66
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	95.51
PRK06231	205	F0F1 ATP synthase subunit B; Validated	95.31
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	95.23
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	95.16
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	95.07
PRK01005	207	V-type ATP synthase subunit E; Provisional	94.99
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	94.96
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	94.81
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	94.64
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	94.45
PRK06568	154	F0F1 ATP synthase subunit B; Validated	94.08
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	93.97
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	93.67
PRK06669	281	fliH flagellar assembly protein H; Validated	93.66
PRK12704	520	phosphodiesterase; Provisional	93.25
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	93.14
PRK03963	198	V-type ATP synthase subunit E; Provisional	93.11
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	92.69
PRK05759	156	F0F1 ATP synthase subunit B; Validated	92.65
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	92.6
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	92.48
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	92.31
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	92.08
PRK05759	156	F0F1 ATP synthase subunit B; Validated	91.85
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	91.84
PRK09098	233	type III secretion system protein HrpB; Validated	91.36
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	90.99
PRK08475	167	F0F1 ATP synthase subunit B; Validated	90.42
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	90.22
PRK08404	103	V-type ATP synthase subunit H; Validated	90.16
PRK00106	535	hypothetical protein; Provisional	90.11
PRK06568	154	F0F1 ATP synthase subunit B; Validated	90.08
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	89.83
PRK02292	188	V-type ATP synthase subunit E; Provisional	89.47
PRK01558	198	V-type ATP synthase subunit E; Provisional	88.94
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	88.6
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	88.5
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	88.36
CHL00019	184	atpF ATP synthase CF0 B subunit	88.22
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	87.67
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	87.52
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	85.86
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	84.69
PRK09173	159	F0F1 ATP synthase subunit B; Validated	84.51
PRK15354	224	type III secretion system protein SsaK; Provisiona	84.18
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	83.83
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	83.7
PRK10930	419	FtsH protease regulator HflK; Provisional	83.47
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	83.4
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	83.33
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	82.8
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	81.94
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	81.2
PRK07352	174	F0F1 ATP synthase subunit B; Validated	81.2
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	80.51

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=100.00  E-value=5.1e-43  Score=246.08  Aligned_cols=108  Identities=40%  Similarity=0.522  Sum_probs=106.9

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 033870            1 MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETE   80 (110)
Q Consensus         1 Mas~~~s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~   80 (110)
                      |+||  ++|||+||.||++|+.||+.||++|++||||||+||++||+.||.++|.+|++|+++++|+++.+..+++++|+
T Consensus         1 M~sq--~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~   78 (113)
T TIGR01147         1 MASQ--TQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ   78 (113)
T ss_pred             CCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            8998  77999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 033870           81 VKIHHLNAGAEKIQYDVVQMLLKHVTTVKN  110 (110)
Q Consensus        81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p  110 (110)
                      .+|+.|+.+|++|++.||++||++||+|+|
T Consensus        79 ~ki~~ik~~~~~~~~~Vv~~Ll~~V~~v~p  108 (113)
T TIGR01147        79 AKIREIKKAVQKNKDAVIKDLLHLVCDISP  108 (113)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999998

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]

Probab=100.00  E-value=5.3e-43  Score=242.60  Aligned_cols=108  Identities=56%  Similarity=0.661  Sum_probs=107.3

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 033870            1 MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETE   80 (110)
Q Consensus         1 Mas~~~s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~   80 (110)
                      |+|+  ++||||||+||++|.+||++||++|.+||||||+||+.||+.||.++|.+|+.|++.++|+.+.++.+++.+|+
T Consensus         1 M~Sq--~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~   78 (108)
T KOG1772|consen    1 MASQ--SQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETD   78 (108)
T ss_pred             Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence            9998  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 033870           81 VKIHHLNAGAEKIQYDVVQMLLKHVTTVKN  110 (110)
Q Consensus        81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p  110 (110)
                      .+|..|+.++++|++.||++||.+||||+|
T Consensus        79 ~ki~~lk~~~~k~~~~Vv~~LL~~V~~v~~  108 (108)
T KOG1772|consen   79 DKIAGLKTSAQKNSDDVVDMLLKYVCDVKP  108 (108)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhccCCC
Confidence            999999999999999999999999999998

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=99.97  E-value=1.4e-31  Score=183.50  Aligned_cols=103  Identities=51%  Similarity=0.677  Sum_probs=86.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870            7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL   86 (110)
Q Consensus         7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i   86 (110)
                      |+|||+||.||++|.+||.+||++|.+||++|+.+|+.||+.||.++|.+|+.+...+.|+.+.....|..+|..+|..|
T Consensus         3 ~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i   82 (105)
T PF03179_consen    3 SDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEI   82 (105)
T ss_dssp             ---SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccC
Q 033870           87 NAGAEKIQYDVVQMLLKHVTTVK  109 (110)
Q Consensus        87 ~~~~~~nk~~Vv~~Ll~~V~~V~  109 (110)
                      +..|++|++.||++||+.||||+
T Consensus        83 ~~~~~~~~~~vv~~ll~~V~~Vk  105 (105)
T PF03179_consen   83 KKSASKNKDKVVDMLLSRVCDVK  105 (105)
T ss_dssp             HHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHhHHHHHHHHHHHHcCCC
Confidence            99999999999999999999996

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=98.20  E-value=9.4e-05  Score=51.92  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=87.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870            7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL   86 (110)
Q Consensus         7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i   86 (110)
                      +.-|-.+-.||-.|.+.|.+|+..+.++++.|+.+|...|+.+-..-+..++++....-.........+-.++..++..|
T Consensus         6 ~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~   85 (108)
T COG2811           6 SEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAI   85 (108)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999998887776666777778888888888888


Q ss_pred             HHHHHHhHHHHHHHHHHhhccc
Q 033870           87 NAGAEKIQYDVVQMLLKHVTTV  108 (110)
Q Consensus        87 ~~~~~~nk~~Vv~~Ll~~V~~V  108 (110)
                      ...  -|.++|+.++++-+..+
T Consensus        86 ~~k--a~~~k~~~~a~~~~~~~  105 (108)
T COG2811          86 LSK--AAEGKVVEAALSEFLAI  105 (108)
T ss_pred             HHH--hHhhHHHHHHHHHHHHH
Confidence            776  68888999888877654

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=97.88  E-value=0.0014  Score=45.14  Aligned_cols=98  Identities=26%  Similarity=0.313  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Q 033870            9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNA   88 (110)
Q Consensus         9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~   88 (110)
                      -|...=.||.++..++..|+......|..|+.+|..+.+....+-..+..................+-.+...++..|..
T Consensus         4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~   83 (103)
T PRK08404          4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV   83 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999998899999999999888888888777777776666555556666677778888999999


Q ss_pred             HHHHhHHHHHHHHHHhhc
Q 033870           89 GAEKIQYDVVQMLLKHVT  106 (110)
Q Consensus        89 ~~~~nk~~Vv~~Ll~~V~  106 (110)
                      ....+.+.+|++++..+.
T Consensus        84 ~a~~k~~~av~~~~~~~~  101 (103)
T PRK08404         84 KAEENFETAVSEAIKLIR  101 (103)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999998764

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.67  E-value=0.002  Score=49.40  Aligned_cols=82  Identities=24%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             CCCcccchhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Q 033870            1 MASNRGHGGIQQLL---------AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGAN   71 (110)
Q Consensus         1 Mas~~~s~gIQqLL---------~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~   71 (110)
                      |++-++..-||+|+         .|+.+|..|+.+|++...+.+.+|+.+|..-++.++.+-+.+.+...+...-.....
T Consensus         1 ~~~~~~~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~   80 (207)
T PRK01005          1 MADLSAQDKLKQICDALREETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRS   80 (207)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445566554         688999999999999999999999999999999999999999998887766665666


Q ss_pred             HHHHHHHHHHH
Q 033870           72 VKRLEQETEVK   82 (110)
Q Consensus        72 ~~~l~~et~~~   82 (110)
                      .-.+.++....
T Consensus        81 ~l~aKqevi~~   91 (207)
T PRK01005         81 LESLKQAVENK   91 (207)
T ss_pred             HHHHHHHHHHH
Confidence            66665554443

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=96.67  E-value=0.069  Score=35.12  Aligned_cols=51  Identities=20%  Similarity=0.368  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      -+|=.||.++..+|.+|+......|.+|+..|...++.-...-+.+-....
T Consensus         2 ~~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii   52 (85)
T TIGR02926         2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEII   52 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678999999999999999999999999999998888877777766555

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=96.62  E-value=0.099  Score=37.70  Aligned_cols=53  Identities=28%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      .+|-.|..+|+.|+..|+..-...+.+|+.+|..+++.....-+.+.......
T Consensus        61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~  113 (159)
T PRK09173         61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETD  113 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888888766655555544433

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=96.43  E-value=0.14  Score=37.11  Aligned_cols=47  Identities=30%  Similarity=0.273  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      .|-.|..+|+.|+..|+........++..+|..|++....+-..+..
T Consensus        68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~  114 (164)
T PRK14471         68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIE  114 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777777777765555555544444444444444444443

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=96.38  E-value=0.17  Score=36.99  Aligned_cols=55  Identities=25%  Similarity=0.294  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG   66 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g   66 (110)
                      +|-.|..+|.+|+.+|+..-.+...++...|..|.+.....-+.+-.........
T Consensus        70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~  124 (167)
T PRK14475         70 EREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAA  124 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777777776666666666666666666665555555544444433

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=96.38  E-value=0.17  Score=37.54  Aligned_cols=40  Identities=18%  Similarity=0.155  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRA   51 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~   51 (110)
                      +|-.|..+|..|+..|+..-.+.......+|+.|++....
T Consensus        84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~  123 (184)
T CHL00019         84 RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLEN  123 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777777766665444433333333333333333

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=96.20  E-value=0.25  Score=36.25  Aligned_cols=51  Identities=24%  Similarity=0.277  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      .+|-.|.++|+.|+.+|+..-.+....+..+|..+++..+.+-..+.....
T Consensus        78 ~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~  128 (174)
T PRK07352         78 QKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ  128 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888888877777666777777777766666666655444

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=96.18  E-value=0.26  Score=34.78  Aligned_cols=46  Identities=35%  Similarity=0.341  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVERE   56 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~e   56 (110)
                      ..|-.|..+|..|+.+|+..-.+...++..+|..+++....+-..+
T Consensus        54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~   99 (147)
T TIGR01144        54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAE   99 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666677777766666554444444444444444444333333

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.08  E-value=0.14  Score=37.34  Aligned_cols=48  Identities=33%  Similarity=0.448  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLA   62 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~   62 (110)
                      +|+.+|.+|+++|+..-.+-+.+++.+|...++.+....+.+......
T Consensus         5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (198)
T PF01991_consen    5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKE   52 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998887777777765443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=95.97  E-value=0.48  Score=35.72  Aligned_cols=50  Identities=36%  Similarity=0.431  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      ..|.+...|.+|+++||..-.+-|.+|+.+|+.-++.-+.+-.+.|...-
T Consensus        24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a   73 (191)
T PF06188_consen   24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQA   73 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999976666677776433

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=95.95  E-value=0.36  Score=35.42  Aligned_cols=50  Identities=20%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK   60 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~   60 (110)
                      .+|-.|+.+|..|+..|+..-.+-..++..+|..|++....+-..+....
T Consensus        77 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e  126 (175)
T PRK14472         77 ELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE  126 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677778888888777776555544444444444444444444444433

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=95.94  E-value=0.33  Score=37.72  Aligned_cols=40  Identities=28%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQA---KEEAEREIAEHRAQ   52 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqA---K~eA~~EIe~yr~~   52 (110)
                      |=.|..+|+.||.+|+..-...+.++   ..+|..|.+..+..
T Consensus        46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~   88 (255)
T TIGR03825        46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQE   88 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888887755554444   34444444444433

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=95.94  E-value=0.46  Score=35.81  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVE   54 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE   54 (110)
                      +|+.+|..|+++|++.-.+-+.+|+.+|+.-++..+.+-+
T Consensus        19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999988877555555

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=95.88  E-value=0.42  Score=34.40  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVERE   56 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~e   56 (110)
                      ++|-.|..+|..|+.+|+..-.+.......+|..|++....+-..+
T Consensus        64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~  109 (159)
T PRK13461         64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLE  109 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777766544443333334444444333333333

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=95.86  E-value=0.43  Score=35.10  Aligned_cols=52  Identities=21%  Similarity=0.311  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAK----MARLRQAKEEAEREIAEHRAQVEREFQRKLA   62 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r----~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~   62 (110)
                      ++|-.|+.+|..|+.+|+..-    ...+.+|+.+|..-++.-+.+=+.+.+....
T Consensus        77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~  132 (173)
T PRK13453         77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIA  132 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777888888888777754    3344555555555555545444444444443

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=95.76  E-value=0.11  Score=39.18  Aligned_cols=56  Identities=30%  Similarity=0.376  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033870            9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES   64 (110)
Q Consensus         9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~   64 (110)
                      +=..|..|+..|..|+.+|+..=....+++..+|..++..+|.+-|.+|+......
T Consensus        25 ~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el   80 (201)
T PF12072_consen   25 NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL   80 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568899999999999999998888999999999999999999999998777664

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=95.68  E-value=0.23  Score=37.20  Aligned_cols=91  Identities=7%  Similarity=0.007  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD------------SGANVKRLEQETEVK   82 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~------------~~~~~~~l~~et~~~   82 (110)
                      .|+.+|..|+.+|++.-..-++.|+.+|+...+.|-..-+.+-........++            ....-..+=..+..+
T Consensus        13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~   92 (185)
T PRK01194         13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH   92 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999888887777666554422            122333333344445


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhc
Q 033870           83 IHHLNAGAEKIQYDVVQMLLKHVT  106 (110)
Q Consensus        83 i~~i~~~~~~nk~~Vv~~Ll~~V~  106 (110)
                      |..|-..- .+++-+.++|+..++
T Consensus        93 L~~l~~~~-~Y~~~L~~LI~~a~~  115 (185)
T PRK01194         93 LMNITKSK-EYDSILNKMIEVAIK  115 (185)
T ss_pred             HHcccCCc-hHHHHHHHHHHHHHH
Confidence            55544211 455555555555444

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=95.68  E-value=0.52  Score=34.54  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      +|-.|..+|..|+..|+..-.+...+...+|..|++....+-..+..
T Consensus        76 ~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie  122 (173)
T PRK13460         76 RLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE  122 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666654444444444444444444444333333

>PRK00106 hypothetical protein; Provisional

Probab=95.68  E-value=0.27  Score=42.76  Aligned_cols=52  Identities=25%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           10 IQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        10 IQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      =-+||.|++.|.+|+.+|+..-...+++|..+|+.++..++.+-++++....
T Consensus        34 ~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R   85 (535)
T PRK00106         34 ELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYR   85 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478899999999998888866555666666665555555555555544433

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=95.67  E-value=0.52  Score=34.84  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------hcCCchhHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK----LAE--------SSGDSGANVKRLEQETEVK   82 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~----~~~--------~~g~~~~~~~~l~~et~~~   82 (110)
                      .|..+|..|+++|+..-.+.+.+|..+|+.+.+.+...-+.+-...    .+.        .+.-.......+=.++..+
T Consensus        14 ~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~   93 (198)
T PRK03963         14 EAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRER   93 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999999888888888888876665544333332211    111        1122233444444555566


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHh
Q 033870           83 IHHLNAGAEKIQYDVVQMLLKH  104 (110)
Q Consensus        83 i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      |..+...  .+++-+.++|...
T Consensus        94 l~~~~~~--~Y~~~l~~li~~a  113 (198)
T PRK03963         94 LAELPED--EYFETLKALTKEA  113 (198)
T ss_pred             HHhhhhh--hHHHHHHHHHHHH
Confidence            6665543  4555555555544

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=95.66  E-value=0.22  Score=36.67  Aligned_cols=50  Identities=24%  Similarity=0.314  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES   64 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~   64 (110)
                      .|+.+|.+|.++|++.-..-+.+|+.+|+...+.+...-+.+........
T Consensus        13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~   62 (188)
T PRK02292         13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQE   62 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999888888888776543

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=95.51  E-value=0.27  Score=36.61  Aligned_cols=19  Identities=16%  Similarity=0.195  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHhHHHHHHHH
Q 033870           83 IHHLNAGAEKIQYDVVQML  101 (110)
Q Consensus        83 i~~i~~~~~~nk~~Vv~~L  101 (110)
                      +..+......--..++..|
T Consensus       144 ~~~l~~~a~~lA~~i~~kL  162 (181)
T PRK13454        144 LESVEEVAKDTAEALVAAL  162 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334443333333343333

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=95.31  E-value=0.71  Score=35.10  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870           11 QQLLAAEQEAQHIVAAARNAKM----ARLRQAKEEAEREIAEHRAQVEREFQRKLAESS   65 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~----krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~   65 (110)
                      ..|-.|..+|..|+..|+..-.    ..+.+|+.+|...++..+.+-+.+-.....+..
T Consensus       107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk  165 (205)
T PRK06231        107 QRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQ  165 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888877543    445566666666666666655555555544333

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=95.23  E-value=0.78  Score=33.87  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAK   31 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r   31 (110)
                      +|-.|..+|+.|+.+|+..-
T Consensus        87 ~L~~A~~ea~~Ii~~A~~~a  106 (184)
T PRK13455         87 KQREVQEQADRIVAAAKDEA  106 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555544443

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=95.16  E-value=0.82  Score=33.05  Aligned_cols=49  Identities=45%  Similarity=0.477  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQRK   60 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~~~   60 (110)
                      .|-.|..+|..|+.+|+..    +...+.+|+.+|...++..+.+=+.+-...
T Consensus        68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a  120 (164)
T PRK14473         68 ELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRM  120 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666653    333444455555444444444444444333

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=95.07  E-value=0.47  Score=34.28  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Q 033870           73 KRLEQETEVKIHHLNAGAEKIQYDV   97 (110)
Q Consensus        73 ~~l~~et~~~i~~i~~~~~~nk~~V   97 (110)
                      .+++.+...-+..++..+..-...+
T Consensus       125 ~~i~~ek~~a~~~l~~~v~~lA~~i  149 (156)
T CHL00118        125 KQLEAQKEKALKSLEEQVDTLSDQI  149 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443333333

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=94.99  E-value=1.2  Score=34.13  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRA   51 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~   51 (110)
                      .-|-.|.++|..|+.+|+....+.+.+|+.+++.|......
T Consensus        31 ~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s   71 (207)
T PRK01005         31 AIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES   71 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999988888774443

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=94.96  E-value=0.75  Score=38.80  Aligned_cols=49  Identities=24%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK   60 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~   60 (110)
                      .|-.|..+|++|+.+|+..-.+...++..+|..|++....+-..+....
T Consensus        61 ~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~e  109 (445)
T PRK13428         61 AVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLL  109 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777776555555555555555555554444444433

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.81  E-value=0.68  Score=31.59  Aligned_cols=44  Identities=36%  Similarity=0.422  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      .++..++.+||.....-+.+|+.+|..+++....+-+++.....
T Consensus        54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~   97 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERII   97 (132)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555666665555555555444444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=94.64  E-value=1.3  Score=34.16  Aligned_cols=53  Identities=19%  Similarity=0.241  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      ++|-.|+.+|..|+.+|+..    +...+.+|+.+|...++..+..-+.+......+
T Consensus        64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~  120 (246)
T TIGR03321        64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE  120 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778889999999977664    556677888888887777777777666655544

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=94.45  E-value=1.5  Score=34.23  Aligned_cols=58  Identities=26%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033870            9 GIQQLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG   66 (110)
Q Consensus         9 gIQqLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g   66 (110)
                      .-++|-.|++++..|+..|+..    +..-+.+|+.+|...++..+..-+.+-+........
T Consensus        62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~  123 (250)
T PRK14474         62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQ  123 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778889999999888874    555577777777777777777666666665555443

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=94.08  E-value=0.99  Score=33.27  Aligned_cols=38  Identities=11%  Similarity=0.217  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           21 QHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        21 ~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      .....+||......+.+|+..|...++.-+.+-..+-.
T Consensus        62 e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~   99 (154)
T PRK06568         62 NAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLE   99 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433333

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=93.97  E-value=2.1  Score=32.60  Aligned_cols=36  Identities=14%  Similarity=0.143  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870           69 GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKH  104 (110)
Q Consensus        69 ~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      .....+++.+...-+..+......--..++..||..
T Consensus       152 ~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~  187 (204)
T PRK09174        152 KEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGG  187 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            344556666666666666666666666666666643

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=93.67  E-value=1.2  Score=29.17  Aligned_cols=50  Identities=28%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870            9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus         9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      .=..|-.|..+|..||..|+....+-..++..+|..+.......-..+..
T Consensus        11 ~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~   60 (85)
T TIGR02926        11 AEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIE   60 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788899999999998887777777777777666665555444444

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=93.66  E-value=2.8  Score=32.90  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=23.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870            8 GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREI   46 (110)
Q Consensus         8 ~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EI   46 (110)
                      .-+..|++|..+|..|+.+||..-.+.+.+|..+++...
T Consensus        78 ~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~  116 (281)
T PRK06669         78 EAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLI  116 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666665555555555554433

>PRK12704 phosphodiesterase; Provisional

Probab=93.25  E-value=4.2  Score=35.17  Aligned_cols=51  Identities=29%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLA   62 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~   62 (110)
                      .+-.|+.+|..|+.+|+..-....++++.+|+.|+..+|.+-+.+|+..+.
T Consensus        32 ~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~   82 (520)
T PRK12704         32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN   82 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445799999999999998766778999999999999999998888755443

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=93.14  E-value=2.5  Score=30.85  Aligned_cols=50  Identities=30%  Similarity=0.295  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           14 LAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      ..+-.++...+.+||.....-+.+|+.+|...++..+.+-+.++......
T Consensus        57 ~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~  106 (161)
T COG0711          57 QALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA  106 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345556677777777777777778888888888887777777766543

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=93.11  E-value=2.6  Score=31.05  Aligned_cols=47  Identities=28%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           17 EQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        17 EkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      +.-..+|..+|+....+.|.+|+.+|+..++....+-+.+.......
T Consensus         5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~   51 (198)
T PRK03963          5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRK   51 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567999999999999999999999999999888888777666544

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=92.69  E-value=2.8  Score=30.21  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           34 RLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        34 rLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      +|.+|+.+|..-++.-+.+-+.......
T Consensus        82 ~L~~A~~ea~~ii~~A~~~a~~~~~~~~  109 (156)
T CHL00118         82 ELSKARKEAQLEITQSQKEAKEIVENEL  109 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555444444333

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=92.65  E-value=2.6  Score=29.83  Aligned_cols=80  Identities=24%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 033870           18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDV   97 (110)
Q Consensus        18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~V   97 (110)
                      .++..++.+|+......+.+|+.+|..+.+....+-..+-.....       .....+..+...-+..++..+..--..+
T Consensus        59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~~~~lA~~~  131 (156)
T PRK05759         59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA-------QAQAEIEQERKRAREELRKQVADLAVAG  131 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666666666666666666666665555555554442       2334555555555555555555555555


Q ss_pred             HHHHHHh
Q 033870           98 VQMLLKH  104 (110)
Q Consensus        98 v~~Ll~~  104 (110)
                      +..+|..
T Consensus       132 a~k~l~~  138 (156)
T PRK05759        132 AEKILGR  138 (156)
T ss_pred             HHHHHHh
Confidence            5554443

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=92.60  E-value=2.8  Score=29.93  Aligned_cols=92  Identities=16%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHH
Q 033870            8 GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD----SGANVKRLEQETEVKI   83 (110)
Q Consensus         8 ~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~----~~~~~~~l~~et~~~i   83 (110)
                      +.|..-|..=.++..-+...+..-...|.+|+.+|...++..+.+-..+...........    .......++.+...-.
T Consensus        41 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~  120 (141)
T PRK08476         41 ASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELK  120 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555544445555555666666667777777777777777666666655444333221    1223334444444444


Q ss_pred             HHHHHHHHHhHHHHHH
Q 033870           84 HHLNAGAEKIQYDVVQ   99 (110)
Q Consensus        84 ~~i~~~~~~nk~~Vv~   99 (110)
                      ..++..+..-.+.++.
T Consensus       121 ~~l~~qv~~~~~~~~~  136 (141)
T PRK08476        121 EQLLSQMPEFKEALNA  136 (141)
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            4444444444444443

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=92.48  E-value=3.8  Score=31.23  Aligned_cols=34  Identities=24%  Similarity=0.169  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           25 AAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        25 ~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      ......-.+.|.+|+.+|..-|+..|.+-+.+..
T Consensus       104 e~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e  137 (204)
T PRK09174        104 DAAVAAYEQELAQARAKAHSIAQAAREAAKAKAE  137 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444555555555555555544444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=92.31  E-value=6.6  Score=33.90  Aligned_cols=52  Identities=31%  Similarity=0.408  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      .|-.|+.+|..|+.+|...-....++++.+|+.|+..+|.+-+.+|+..+..
T Consensus        26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r   77 (514)
T TIGR03319        26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE   77 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888888888888877666678888899999999998888887555443

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=92.08  E-value=3.6  Score=30.04  Aligned_cols=50  Identities=26%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK   60 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~   60 (110)
                      +.|-.|..+|+.||+.|+..-..-...++.+|+.|.+.....-+.+...-
T Consensus        65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e  114 (161)
T COG0711          65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE  114 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888887666666666666666655555544444433

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=91.85  E-value=3.4  Score=29.28  Aligned_cols=48  Identities=31%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      ..|-.|..+|..|+.+|+..    +...+.+|+.+|..-++..+..-+.+.+
T Consensus        63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~  114 (156)
T PRK05759         63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK  114 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888877764    4444555555555555554444444433

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.84  E-value=2.9  Score=28.45  Aligned_cols=57  Identities=28%  Similarity=0.313  Sum_probs=37.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870            7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus         7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      ++.|+..+.-=.....-+......-..+|.+|+.+|..-++..+.+-+........+
T Consensus        32 ~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e   88 (132)
T PF00430_consen   32 KAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE   88 (132)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455655554333334444455556667788999999999998888888888766544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK09098 type III secretion system protein HrpB; Validated

Probab=91.36  E-value=5.6  Score=30.88  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      +..+|+++||+.=.+-|-+|+.+|..=++..+.+.|..|+.-.
T Consensus        40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy   82 (233)
T PRK09098         40 ERDAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGY   82 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777777776667777777777777777766666665443

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=90.99  E-value=4  Score=28.46  Aligned_cols=76  Identities=21%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033870           19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVV   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      ++....+.||.....-+.+|+.+|..+.+.....-..+-....       ......++.+...-+..++..+..---.++
T Consensus        61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~-------~~a~~~i~~e~~~a~~~l~~~v~~la~~~a  133 (140)
T PRK07353         61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASK-------EKARREIEQQKQAALAQLEQQVDALSRQIL  133 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444333       222344555555555555555444444444


Q ss_pred             HHH
Q 033870           99 QML  101 (110)
Q Consensus        99 ~~L  101 (110)
                      ..|
T Consensus       134 ~kl  136 (140)
T PRK07353        134 EKL  136 (140)
T ss_pred             HHh
Confidence            333

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=90.42  E-value=5.5  Score=29.16  Aligned_cols=26  Identities=27%  Similarity=0.221  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           35 LRQAKEEAEREIAEHRAQVEREFQRK   60 (110)
Q Consensus        35 LKqAK~eA~~EIe~yr~~kE~ef~~~   60 (110)
                      |.+|+.+|..-|+..+.+-+......
T Consensus        83 L~~Ar~eA~~Ii~~A~~eAe~~~~~i  108 (167)
T PRK08475         83 LEEAKEKAELIVETAKKEAYILTQKI  108 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444433

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=90.22  E-value=10  Score=32.00  Aligned_cols=43  Identities=28%  Similarity=0.319  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      +...++.+|+.....-+.+|+.+|+.+.+....+-+.+.....
T Consensus        57 ~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~   99 (445)
T PRK13428         57 AHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIK   99 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555666666666665555555555555444

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=90.16  E-value=4.4  Score=27.68  Aligned_cols=51  Identities=25%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKM----ARLRQAKEEAEREIAEHRAQVEREFQRKL   61 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~----krLKqAK~eA~~EIe~yr~~kE~ef~~~~   61 (110)
                      +.|-.|..+|..|+..|+..-.    .-+.+|+.+|..-++..+.+-+.+-....
T Consensus        17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~   71 (103)
T PRK08404         17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL   71 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777776533    33666666666666666665555544433

>PRK00106 hypothetical protein; Provisional

Probab=90.11  E-value=11  Score=33.06  Aligned_cols=47  Identities=30%  Similarity=0.367  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR   59 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~   59 (110)
                      |-.|+.+|..|+.+|...-....++++.+|+.|+..+|.+-+.+|+.
T Consensus        48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~e   94 (535)
T PRK00106         48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKS   94 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34799999999999998766777999999999999999998888743

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=90.08  E-value=6  Score=29.10  Aligned_cols=47  Identities=11%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      .|-.|..+|+.|+.+|+....+-..+++.+|..|++....+-..+..
T Consensus        64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie  110 (154)
T PRK06568         64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ  110 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777777777777777777777777766655444433

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=89.83  E-value=5.8  Score=28.55  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033870           24 VAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS----GANVKRLEQETEVKIHHLNAGAEKIQYDVVQ   99 (110)
Q Consensus        24 V~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~----~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~   99 (110)
                      .......-..+|.+|+.+|..-|+..+.+-+..+...........    ......++.+...-+..++..+..---.+..
T Consensus        58 a~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~  137 (164)
T PRK14473         58 LANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTAS  137 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334445555555555555555555555444333222111    2233444444444455554444433333333


Q ss_pred             HH
Q 033870          100 ML  101 (110)
Q Consensus       100 ~L  101 (110)
                      .+
T Consensus       138 ki  139 (164)
T PRK14473        138 RV  139 (164)
T ss_pred             HH
Confidence            33

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=89.47  E-value=6.7  Score=28.75  Aligned_cols=77  Identities=25%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ-RKLAESSGDSGANVKRLEQETEVKIHHLNAG   89 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~-~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~   89 (110)
                      |=+|+++|..|+.+|++.=.+-..++..+|.++...+.......-. ......+.........+=..+..+|..+-..
T Consensus        22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~   99 (188)
T PRK02292         22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD   99 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            3468899999999999887777788888888888887665444433 2223355555666677777777777776653

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=88.94  E-value=8.2  Score=29.02  Aligned_cols=31  Identities=32%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAE   43 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~   43 (110)
                      |-+|+++|.+||.+|++.-.+-++.|+.+|.
T Consensus        28 i~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         28 ILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5578888888888888876555555444444

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=88.60  E-value=8.2  Score=28.61  Aligned_cols=51  Identities=37%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~   63 (110)
                      |-.|..+|..|+..|+..-.+...++..+|+.|++....+-+.........
T Consensus        92 L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~  142 (181)
T PRK13454         92 LADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAG  142 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444433333

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=88.50  E-value=7.8  Score=28.27  Aligned_cols=78  Identities=14%  Similarity=0.196  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033870           19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVV   98 (110)
Q Consensus        19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv   98 (110)
                      ++...+.+|+......+..|+.+|+.+.+....+-..+-......       ....++.+...-+..++..+..---.+.
T Consensus        72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~-------a~~~ie~e~~~a~~el~~ei~~lA~~~a  144 (173)
T PRK13460         72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQ-------AVKEIELAKGKALSQLQNQIVEMTITIA  144 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666666666666655555554432       3344555555555555555444444444


Q ss_pred             HHHHH
Q 033870           99 QMLLK  103 (110)
Q Consensus        99 ~~Ll~  103 (110)
                      ..+|.
T Consensus       145 ~kil~  149 (173)
T PRK13460        145 SKVLE  149 (173)
T ss_pred             HHHHH
Confidence            44433

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=88.36  E-value=7.3  Score=27.74  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAE   43 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~   43 (110)
                      ....+...++..||..-......+..+|.
T Consensus        59 ~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~   87 (141)
T PRK08476         59 EIEHEIETILKNAREEANKIRQKAIAKAK   87 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555543333333333333

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=88.22  E-value=8.5  Score=28.36  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR   59 (110)
Q Consensus        18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~   59 (110)
                      .++..++..||......+..|+.+|+.+.+....+-..+-..
T Consensus        79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~  120 (184)
T CHL00019         79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLER  120 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555544444444443

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=87.67  E-value=9.2  Score=28.12  Aligned_cols=64  Identities=16%  Similarity=0.219  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 033870           22 HIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEK   92 (110)
Q Consensus        22 ~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~   92 (110)
                      ..+.+||......+.+|+.+|+.+.+..+.+-+.+-....       ......++.+...-+..++..+..
T Consensus        86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~-------~~A~~~I~~ek~~a~~~l~~~i~~  149 (184)
T PRK13455         86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRL-------AAAEDQIASAEAAAVKAVRDRAVS  149 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444445444444444444444433322222       223334444444444444444433

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=87.52  E-value=8.7  Score=27.65  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           24 VAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR   59 (110)
Q Consensus        24 V~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~   59 (110)
                      .......-.++|.+|+.+|..-|+..+.+.+.....
T Consensus        58 a~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~   93 (164)
T PRK14471         58 MQNLQADNERLLKEARAERDAILKEAREIKEKMIAD   93 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334445555555555555555555444443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=85.86  E-value=9.8  Score=26.64  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870           33 ARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD----SGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKH  104 (110)
Q Consensus        33 krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~----~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      .+|.+|+.+|..-|+..+.+-+.............    .......++.+...-+..++.....---.++..||..
T Consensus        54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~  129 (147)
T TIGR01144        54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIER  129 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555555555555555444444333322211    1233445555555555555555555555555555443

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=84.69  E-value=13  Score=27.00  Aligned_cols=66  Identities=21%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 033870           20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEK   92 (110)
Q Consensus        20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~   92 (110)
                      +...++.||.....-+.+|+.+|+.+++.-+.+-+.+.....       .....+++.+...-+..++..+..
T Consensus        67 ~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~-------~~A~~~I~~e~~~a~~el~~e~~~  132 (167)
T PRK14475         67 VKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRA-------EMAERKIAQAEAQAAADVKAAAVD  132 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444455555554444444444333333333       233344555555555555444433

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=84.51  E-value=12  Score=26.67  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 033870           34 RLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS----GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLK  103 (110)
Q Consensus        34 rLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~----~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~  103 (110)
                      +|..|+.+|..-|+..+.+.+.....-.....-..    .....+++.+...-+..++..+..---.++..+|.
T Consensus        62 ~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~  135 (159)
T PRK09173         62 KRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLA  135 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555555555544443333222221111    22344566666666666665555444444444443

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=84.18  E-value=18  Score=28.36  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRL   75 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l   75 (110)
                      |=.|-..|.+||..|-.++..-|.||..+|.+=+.+-+.+.|.+.-+-.-...-..+.....|
T Consensus        47 l~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~~~L~qHV~wLve~e~lE~sL  109 (224)
T PRK15354         47 VSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQEDENQFRSL  109 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            446778899999999999999999999999999999999999998765544444444444333

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=83.83  E-value=15  Score=26.92  Aligned_cols=73  Identities=12%  Similarity=0.263  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870           32 MARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG----DSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKH  104 (110)
Q Consensus        32 ~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g----~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      .++|.+|+.+|..-++..+.+-+........+...    -.......++.+...-+..++..+..---.++..+|..
T Consensus        76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~  152 (173)
T PRK13453         76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRK  152 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33455555555555555555555544444332211    11234455566666666666655555555555544443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=83.70  E-value=27  Score=30.21  Aligned_cols=50  Identities=22%  Similarity=0.196  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870           16 AEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESS   65 (110)
Q Consensus        16 AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~   65 (110)
                      +.+.|..++.+|+..-..-+++|..+|+.++..++.+-+.++.....+..
T Consensus        19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele   68 (514)
T TIGR03319        19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELE   68 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788899999988877888999999999999999999999888776665

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=83.47  E-value=19  Score=30.51  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREI   46 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EI   46 (110)
                      ..+||..|.+|+.+|+....+.+-+|...+++.|
T Consensus       265 i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i  298 (419)
T PRK10930        265 IREAEAYTNEVQPRANGQAQRILEEARAYKAQTI  298 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555554544443333

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=83.40  E-value=15  Score=26.76  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033870           20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQ   99 (110)
Q Consensus        20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~   99 (110)
                      +...+..||.....-+..|+.+|+.+.+....+-..+-....       ......++.+...-+..++..+..---.++.
T Consensus        75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~-------~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~  147 (175)
T PRK14472         75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMI-------ASAKEEIEQEKRRALDVLRNEVADLAVKGAE  147 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444555555555444444444444443333       2233444444554454544444443333333


Q ss_pred             HHH
Q 033870          100 MLL  102 (110)
Q Consensus       100 ~Ll  102 (110)
                      .+|
T Consensus       148 kil  150 (175)
T PRK14472        148 KII  150 (175)
T ss_pred             HHH
Confidence            333

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=83.33  E-value=16  Score=27.02  Aligned_cols=71  Identities=10%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033870           20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQ   99 (110)
Q Consensus        20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~   99 (110)
                      ..+.+.+||..-.+-..+|+..+..|.+.=+..-|.++.                  .--...|+.|.....+-+....+
T Consensus        67 ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~------------------~~~~~~~~~~~~~~~~~~~~~~~  128 (155)
T PRK06569         67 YNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK------------------NSINQNIEDINLAAKQFRTNKSE  128 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHH
Confidence            344444444444444444444444444444444444444                  33344455555555555555555


Q ss_pred             HHHHhhccc
Q 033870          100 MLLKHVTTV  108 (110)
Q Consensus       100 ~Ll~~V~~V  108 (110)
                      -|++..|+|
T Consensus       129 ~~i~~~~~i  137 (155)
T PRK06569        129 AIIKLAVNI  137 (155)
T ss_pred             HHHHHHHHH
Confidence            566555554

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=82.80  E-value=20  Score=27.77  Aligned_cols=52  Identities=27%  Similarity=0.263  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAERE-------IAEHRAQVEREFQRKLAE   63 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~E-------Ie~yr~~kE~ef~~~~~~   63 (110)
                      .+..+..+...++..||..-..-+.+|+.+|+.-       ++.++.+.++-++.-..+
T Consensus        34 ~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e   92 (255)
T TIGR03825        34 ELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE   92 (255)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667889999999999999999999988865       355666666666654433

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=81.94  E-value=15  Score=25.55  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870           27 ARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESS   65 (110)
Q Consensus        27 AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~   65 (110)
                      ....-..+|.+|+.+|..-++..+.+-+.+.........
T Consensus        58 ~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~   96 (140)
T PRK07353         58 LEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQ   96 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444568888888888888888888888877665544

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.20  E-value=18  Score=26.08  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRA   51 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~   51 (110)
                      .|..++..|+.+|...-..++......+.++++..+.
T Consensus        16 eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (198)
T PF01991_consen   16 EAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKE   52 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555544444444444444444444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=81.20  E-value=18  Score=26.26  Aligned_cols=38  Identities=26%  Similarity=0.158  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           21 QHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        21 ~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      ...+..||......+.+|+.+|+.+.+....+-+++-.
T Consensus        77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~  114 (174)
T PRK07352         77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMA  114 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443333333

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=80.51  E-value=17  Score=25.54  Aligned_cols=27  Identities=52%  Similarity=0.521  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           19 EAQHIVAAARNAKMARLRQAKEEAERE   45 (110)
Q Consensus        19 eA~~iV~~AR~~r~krLKqAK~eA~~E   45 (110)
                      +|..|++.||..-.+-+.+|..+++..
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~   40 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEAS   40 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999888888888877653

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
2k88_A	60	Vacuolar proton pump subunit G; G subunit, V1VO AT	8e-10

>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Length = 60

 Score = 50.0 bits (119), Expect = 8e-10
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 8  GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60
           GI  LL AE+EA  IV+ AR  +  +L+QAK +A +EI  ++ Q ++E +  
Sbjct: 6  NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEF 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.74
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	96.6
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	95.87
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	94.86
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	94.53
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	94.39
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	91.08

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=100.00  E-value=1.4e-42  Score=244.63  Aligned_cols=104  Identities=32%  Similarity=0.444  Sum_probs=92.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870            7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL   86 (110)
Q Consensus         7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i   86 (110)
                      |+|||+||+||++|++||++||++|++||||||+||++||+.||.++|++|+.|++.++|+++++..+++.+|+.+|+.|
T Consensus         9 s~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki~~i   88 (119)
T 4efa_G            9 KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGELAEI   88 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccCC
Q 033870           87 NAGAEKIQYDVVQMLLKHVTTVKN  110 (110)
Q Consensus        87 ~~~~~~nk~~Vv~~Ll~~V~~V~p  110 (110)
                      +.+|.+|++.||++||++||||+|
T Consensus        89 ~~~~~~~k~~Vv~~Ll~~V~dvkp  112 (119)
T 4efa_G           89 KKIAEKKKDDVVKILIETVIKPSA  112 (119)
T ss_dssp             HHHHHHTHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHhHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999998

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.74  E-value=0.017  Score=41.59  Aligned_cols=88  Identities=17%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCchhHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES------------SGDSGANVKRLEQETEVK   82 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~------------~g~~~~~~~~l~~et~~~   82 (110)
                      +|+.+|..|+++|+..-..-+.+|+.+|+...+.....-+.+.+......            +....+....+-.++...
T Consensus        10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~   89 (187)
T 3v6i_A           10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA   89 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999888877777766553322            223344455555555555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHH
Q 033870           83 IHHLNAGAEKIQYDVVQMLLK  103 (110)
Q Consensus        83 i~~i~~~~~~nk~~Vv~~Ll~  103 (110)
                      |..+-.+ ..+.+-+.++++.
T Consensus        90 L~~~~~~-~~Y~~~L~~Li~e  109 (187)
T 3v6i_A           90 LEALPQK-PEWPEVVRKLALE  109 (187)
T ss_dssp             HHHGGGS-TTHHHHHHHHHHH
T ss_pred             HHhhhCC-ccHHHHHHHHHHH
Confidence            5555443 2233444444443

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=96.60  E-value=0.0046  Score=37.89  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870            9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAER   44 (110)
Q Consensus         9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~   44 (110)
                      -|..+-.||.+|.+||.+|.+.+..++..|+.+|..
T Consensus        17 vL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke   52 (56)
T 2k6i_A           17 AIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK   52 (56)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566899999999999999999999999999974

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=95.87  E-value=0.13  Score=30.66  Aligned_cols=48  Identities=38%  Similarity=0.399  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      +.|-.|..+|..||..|++...+...++..+|..|.+....+--.+..
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie   49 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999998888888887777777766655444443

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=94.86  E-value=0.55  Score=31.83  Aligned_cols=89  Identities=24%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 033870            7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEA-----------EREIAEHRAQVEREFQRKLAESSGDSGANVKRL   75 (110)
Q Consensus         7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA-----------~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l   75 (110)
                      ...|+.|-.=|.+=...+..||+.=...++.|..+|           ...-.+|+..-+.+-.           .+..+.
T Consensus         5 ~gllk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~-----------ri~~ea   73 (105)
T 3v6i_B            5 LGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETE-----------ALLARY   73 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence            445666655555555555555555555555555444           4444444444444433           344555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 033870           76 EQETEVKIHHLNAGAEKIQYDVVQMLLKHVT  106 (110)
Q Consensus        76 ~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V~  106 (110)
                      .......-+.++.....+-+..|..+|..|+
T Consensus        74 ra~Aeaea~~v~~~A~~r~~~Av~~vLkeVL  104 (105)
T 3v6i_B           74 RERAEAEAKAVREKAMARLDEAVALVLKEVL  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence            5666777788899999999999999999886

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=94.53  E-value=0.12  Score=30.56  Aligned_cols=43  Identities=37%  Similarity=0.485  Sum_probs=31.2

Q ss_pred             CCCcccchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870            1 MASNRGHGGIQQLL-----AAEQEAQHIVAAARNAKMARLRQAKEEAERE   45 (110)
Q Consensus         1 Mas~~~s~gIQqLL-----~AEkeA~~iV~~AR~~r~krLKqAK~eA~~E   45 (110)
                      |+..  -.|+..|.     .|..+|..|+.+|+..-..-+.+|+.+|+.+
T Consensus         1 ~~~~--~~gle~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~   48 (52)
T 2kk7_A            1 MAVK--LMGVDKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR   48 (52)
T ss_dssp             CCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             Ccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444  34665544     5888888888888888888888888887764

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=94.39  E-value=0.94  Score=33.40  Aligned_cols=91  Identities=10%  Similarity=0.058  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCchhHHHHHHHHHHH
Q 033870           14 LAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE------------SSGDSGANVKRLEQETEV   81 (110)
Q Consensus        14 L~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~------------~~g~~~~~~~~l~~et~~   81 (110)
                      -+|+.+|.+|..+|...-..-..++..++...|..+...++++.......            .+...++....+-.++..
T Consensus        26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~  105 (233)
T 4efa_E           26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKE  105 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999887555555555666666666555555444322211            233344555556666666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 033870           82 KIHHLNAGAEKIQYDVVQMLLKH  104 (110)
Q Consensus        82 ~i~~i~~~~~~nk~~Vv~~Ll~~  104 (110)
                      +|..+..+-..++.-+..+++..
T Consensus       106 ~L~~~~~d~~~Y~~lL~~Li~ea  128 (233)
T 4efa_E          106 KLSGIANNRDEYKPILQSLIVEA  128 (233)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHH
Confidence            66666544444444444444443

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=91.08  E-value=0.19  Score=35.19  Aligned_cols=45  Identities=18%  Similarity=0.147  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR   59 (110)
Q Consensus        15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~   59 (110)
                      .|+.+|..|+.+|+.....-+.+|+.+|..+.+.+..+-+.+...
T Consensus        14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~   58 (198)
T 2dm9_A           14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL   58 (198)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999988877776666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	96.3
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	81.17

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.018  Score=34.17  Aligned_cols=45  Identities=40%  Similarity=0.398  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVERE   56 (110)
Q Consensus        12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~e   56 (110)
                      +|-.|-.+|+.||.+|+++..+-+-+||..|..|-+.....-..+
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~e   47 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999998887765544433

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=81.17  E-value=3.3  Score=23.71  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870           13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ   58 (110)
Q Consensus        13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~   58 (110)
                      +-.|.+++..||.+|+..       |+.|+.+=|..-+.+=|.+..
T Consensus        15 i~qA~~ra~qIveeak~~-------A~~Ea~rI~~~A~~eIe~E~~   53 (61)
T d1l2pa_          15 IEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAEIEAERK   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            446888999999988763       444444444444444444433