Citrus Sinensis ID: 033884
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 109 | ||||||
| 449432032 | 157 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.694 | 0.853 | 9e-50 | |
| 224075186 | 154 | predicted protein [Populus trichocarpa] | 1.0 | 0.707 | 0.844 | 1e-49 | |
| 388498352 | 157 | unknown [Medicago truncatula] | 1.0 | 0.694 | 0.816 | 4e-49 | |
| 225426208 | 157 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.694 | 0.844 | 4e-49 | |
| 356520260 | 157 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.694 | 0.816 | 9e-49 | |
| 358248096 | 157 | uncharacterized protein LOC100813346 [Gl | 1.0 | 0.694 | 0.816 | 1e-48 | |
| 225470956 | 157 | PREDICTED: uncharacterized protein C119. | 1.0 | 0.694 | 0.834 | 1e-48 | |
| 297805428 | 154 | ORMDL family protein [Arabidopsis lyrata | 1.0 | 0.707 | 0.844 | 1e-48 | |
| 224053743 | 154 | predicted protein [Populus trichocarpa] | 1.0 | 0.707 | 0.825 | 2e-48 | |
| 255564625 | 157 | ormdl, putative [Ricinus communis] gi|22 | 1.0 | 0.694 | 0.816 | 2e-48 |
| >gi|449432032|ref|XP_004133804.1| PREDICTED: uncharacterized protein C119.09c-like [Cucumis sativus] gi|449477951|ref|XP_004155172.1| PREDICTED: uncharacterized protein C119.09c-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 200 bits (509), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/109 (85%), Positives = 101/109 (92%)
Query: 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFV 60
+YV+ VPPTDLNRNTEWF YPGVWTTY+ ILF +WLLVLS+F CS GMAWT+V+LSHF V
Sbjct: 4 LYVKAVPPTDLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSHFAV 63
Query: 61 TYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVL 109
TYHFFHWKKGTPFA+DQGIYN LTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 64 TYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075186|ref|XP_002304572.1| predicted protein [Populus trichocarpa] gi|222842004|gb|EEE79551.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388498352|gb|AFK37242.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225426208|ref|XP_002262624.1| PREDICTED: uncharacterized protein C119.09c isoform 1 [Vitis vinifera] gi|147807640|emb|CAN68846.1| hypothetical protein VITISV_024149 [Vitis vinifera] gi|297742409|emb|CBI34558.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356520260|ref|XP_003528781.1| PREDICTED: uncharacterized protein C119.09c-like isoform 1 [Glycine max] gi|356520262|ref|XP_003528782.1| PREDICTED: uncharacterized protein C119.09c-like isoform 2 [Glycine max] gi|356520264|ref|XP_003528783.1| PREDICTED: uncharacterized protein C119.09c-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
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| >gi|358248096|ref|NP_001239812.1| uncharacterized protein LOC100813346 [Glycine max] gi|255633478|gb|ACU17097.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|225470956|ref|XP_002266406.1| PREDICTED: uncharacterized protein C119.09c isoform 1 [Vitis vinifera] gi|147833320|emb|CAN64101.1| hypothetical protein VITISV_008727 [Vitis vinifera] gi|297745501|emb|CBI40581.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297805428|ref|XP_002870598.1| ORMDL family protein [Arabidopsis lyrata subsp. lyrata] gi|297316434|gb|EFH46857.1| ORMDL family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224053743|ref|XP_002297957.1| predicted protein [Populus trichocarpa] gi|222845215|gb|EEE82762.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255564625|ref|XP_002523307.1| ormdl, putative [Ricinus communis] gi|223537395|gb|EEF39023.1| ormdl, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 109 | ||||||
| TAIR|locus:2165690 | 154 | AT5G42000 "AT5G42000" [Arabido | 1.0 | 0.707 | 0.834 | 4e-51 | |
| TAIR|locus:2035352 | 157 | AT1G01230 "AT1G01230" [Arabido | 1.0 | 0.694 | 0.779 | 3.7e-48 | |
| POMBASE|SPBC119.09c | 186 | SPBC119.09c "ORMDL family prot | 0.899 | 0.526 | 0.377 | 3.2e-17 | |
| UNIPROTKB|Q53FV1 | 153 | ORMDL2 "ORM1-like protein 2" [ | 0.954 | 0.679 | 0.4 | 3.7e-16 | |
| MGI|MGI:2181669 | 153 | Ormdl1 "ORM1-like 1 (S. cerevi | 0.954 | 0.679 | 0.409 | 3.7e-16 | |
| UNIPROTKB|J3QRM9 | 129 | ORMDL3 "ORM1-like protein 3" [ | 0.926 | 0.782 | 0.411 | 6e-16 | |
| UNIPROTKB|Q8N138 | 153 | ORMDL3 "ORM1-like protein 3" [ | 0.926 | 0.660 | 0.411 | 6e-16 | |
| UNIPROTKB|Q0VD15 | 153 | ORMDL3 "ORM1-like protein 3" [ | 0.926 | 0.660 | 0.411 | 7.7e-16 | |
| UNIPROTKB|Q5E972 | 153 | ORMDL2 "ORM1-like protein 2" [ | 0.954 | 0.679 | 0.4 | 7.7e-16 | |
| UNIPROTKB|E2R9D6 | 153 | ORMDL3 "Uncharacterized protei | 0.926 | 0.660 | 0.411 | 7.7e-16 |
| TAIR|locus:2165690 AT5G42000 "AT5G42000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 91/109 (83%), Positives = 100/109 (91%)
Query: 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFV 60
MYVR +P TD+NRNTEWFTYPGVWTTY+ ILF SWLLVLS+F+CS G+AWT+VHL+HF V
Sbjct: 1 MYVRALPTTDVNRNTEWFTYPGVWTTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV 60
Query: 61 TYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVL 109
TYH FHWKKGTPF DDQG+YN LTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61 TYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 109
|
|
| TAIR|locus:2035352 AT1G01230 "AT1G01230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| POMBASE|SPBC119.09c SPBC119.09c "ORMDL family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q53FV1 ORMDL2 "ORM1-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2181669 Ormdl1 "ORM1-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J3QRM9 ORMDL3 "ORM1-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8N138 ORMDL3 "ORM1-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0VD15 ORMDL3 "ORM1-like protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5E972 ORMDL2 "ORM1-like protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R9D6 ORMDL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 109 | |||
| pfam04061 | 135 | pfam04061, ORMDL, ORMDL family | 2e-45 | |
| COG5081 | 180 | COG5081, COG5081, Predicted membrane protein [Func | 8e-20 |
| >gnl|CDD|190849 pfam04061, ORMDL, ORMDL family | Back alignment and domain information |
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Score = 142 bits (361), Expect = 2e-45
Identities = 50/98 (51%), Positives = 61/98 (62%)
Query: 12 NRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGT 71
N N W G W Y+ ++ + L +LS+ S+ AWTL +L H +Y FFHW KGT
Sbjct: 1 NPNANWVNQRGAWLIYVVLILLLKLFLLSIPGFSTEWAWTLTNLIHNIGSYIFFHWVKGT 60
Query: 72 PFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVL 109
PF DQG Y+ LT WEQID G Q T RKFLTVVP+VL
Sbjct: 61 PFEFDQGAYDNLTMWEQIDEGAQYTPARKFLTVVPIVL 98
|
Evidence form suggests that ORMDLs are involved in protein folding in the ER. Orm proteins have been identified as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase, the first and rate-limiting enzyme in sphingolipid production. This novel and conserved protein complex, has been termed the SPOTS complex (serine palmitoyltransferase, Orm1/2, Tsc3, and Sac1). Length = 135 |
| >gnl|CDD|227413 COG5081, COG5081, Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 109 | |||
| KOG3319 | 153 | consensus Predicted membrane protein [Function unk | 100.0 | |
| PF04061 | 136 | ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 b | 100.0 | |
| COG5081 | 180 | Predicted membrane protein [Function unknown] | 100.0 |
| >KOG3319 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Probab=100.00 E-value=1.8e-59 Score=350.89 Aligned_cols=109 Identities=50% Similarity=0.858 Sum_probs=107.1
Q ss_pred CccccCCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhhhhhhheeecccCCCCCCccc
Q 033884 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIY 80 (109)
Q Consensus 1 ~~~~~~~~~~~N~N~~W~~~~G~W~~yil~i~l~~l~~l~ip~~s~~~aWTltn~~h~~~ty~~fHwvKGtPf~~~qG~y 80 (109)
++.++.+++|+|+|++|+++||+|++|+++|+++|++++|+||+|.+++|||||++|+++||+||||+||+||++|||+|
T Consensus 1 m~~~~~~~~~~N~Nt~w~~~rG~Wl~yil~i~ll~l~~ls~p~~s~~~aWTltnl~h~~~tyi~fH~vkGtPF~~d~g~y 80 (153)
T KOG3319|consen 1 MMDVADQHSDVNPNTRWVNQRGAWLIYILIILLLHLVLLSIPFVSPPWAWTLTNLIHNIGTYIFFHWVKGTPFEDDQGAY 80 (153)
T ss_pred CCccccCcCcCCCCceeeecCchHHHHHHHHHHHHHHHHhCccCCcchhHHHHHHHHHHhHheeEEEecCCCCcCCCcHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCCccceeEEEeecccC
Q 033884 81 NGLTWWEQIDNGKQLTRNRKFLTVVPVVL 109 (109)
Q Consensus 81 ~~LT~WEQID~g~q~T~trKFL~~vPIvL 109 (109)
|+||+|||||+|.||||+||||++|||||
T Consensus 81 ~~lT~WEQid~g~q~T~~RKFLtivPIvL 109 (153)
T KOG3319|consen 81 RLLTHWEQIDDGVQYTPSRKFLTIVPIVL 109 (153)
T ss_pred hhccHHHHhccccccccchhhhhHHHHHH
Confidence 99999999999999999999999999986
|
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| >PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates | Back alignment and domain information |
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| >COG5081 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00