Citrus Sinensis ID: 033892

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFSLKD
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEcccHHHHHHHHccccccccEEEEccccccccccccEEccccccccccEEEEEEEEcccccccccccHHccEEEEEEEcHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHcccccccccEEEEEEccHHHHHHHHccccccccEEEEcccccEEcccccEEEccccccccEEEEEEEEEccccccccHHHHHHHHEEEEEEcccccHHHHcc
Coil and Loop (DISEMBL)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELgnavpkepvlflkptssylgnggtievphpldslhHEVELAVVIGQkardvpettamdYVGGFIFVKILLLLFSLKD
Flexible Loop (DISEMBL)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKElgnavpkepVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFSLKD
Low Complexity Region (SEG)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFSLKD
Disordered region (IsUnstruct)
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFS***
Disordered Region (DISOPRED)
*****SA*QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFSLKD
Disordered Region (DISEMBL)
*********KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFSLKD
Disordered Region (DISPRO)
*******VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLLFSLKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q86I22	218	Acylpyruvase FAHD1, mitoc	yes	no	0.807	0.403	0.606	2e-25
Q5RDW0	224	Acylpyruvase FAHD1, mitoc	yes	no	0.844	0.410	0.510	9e-22
Q6P587	224	Acylpyruvase FAHD1, mitoc	yes	no	0.844	0.410	0.510	1e-21
Q2HJ98	221	Acylpyruvase FAHD1, mitoc	yes	no	0.844	0.416	0.5	2e-21
Q6AYQ8	221	Acylpyruvase FAHD1, mitoc	yes	no	0.844	0.416	0.456	2e-19
Q8R0F8	227	Acylpyruvase FAHD1, mitoc	yes	no	0.844	0.405	0.445	3e-19
P34673	214	Uncharacterized protein Z	yes	no	0.733	0.373	0.537	8e-19
O58377	230	Uncharacterized protein P	yes	no	0.761	0.360	0.469	1e-18
Q9UYW0	225	Uncharacterized protein P	yes	no	0.733	0.355	0.487	1e-17
O28058	250	Uncharacterized protein A	yes	no	0.733	0.32	0.475	4e-16

>sp|Q86I22|FAHD1_DICDI Acylpyruvase FAHD1, mitochondrial OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 64/89 (71%), Gaps = 1/89 (1%)

Query: 8  VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNG-GTIEVPHPLDSL 66
          + K  + G KIVAVGRNYA HAKELGN +P EP  FLKPTSSYL  G G IE+P     +
Sbjct: 1  MNKFWETGRKIVAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDI 60

Query: 67 HHEVELAVVIGQKARDVPETTAMDYVGGF 95
          HHEVEL +VIG+K RD+   +AMDYV G+
Sbjct: 61 HHEVELGIVIGKKGRDIDLKSAMDYVSGY 89

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 5

>sp|Q5RDW0|FAHD1_PONAB Acylpyruvase FAHD1, mitochondrial OS=Pongo abelii GN=FAHD1 PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 63/92 (68%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 6  ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           +LHHE+EL VV+G++ R VPE  AMDYVGG+
Sbjct: 66 RNLHHELELGVVMGRRCRAVPEAAAMDYVGGY 97

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6P587|FAHD1_HUMAN Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 63/92 (68%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 6  ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           +LHHE+EL VV+G++ R VPE  AMDYVGG+
Sbjct: 66 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGY 97

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q2HJ98|FAHD1_BOVIN Acylpyruvase FAHD1, mitochondrial OS=Bos taurus GN=FAHD1 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 62/92 (67%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          AS  + +  + G  IV VGRNYA H +E+ +A P EPVLFLKP+++Y   G  + VP   
Sbjct: 3  ASRPLSRFWEWGKNIVCVGRNYADHVREMQSAAPSEPVLFLKPSTAYAPEGSPVLVPAYT 62

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           +LHHE+ELAVV+G++ R V E  AMDYV G+
Sbjct: 63 RNLHHELELAVVMGKRCRAVSEAAAMDYVAGY 94

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6AYQ8|FAHD1_RAT Acylpyruvase FAHD1, mitochondrial OS=Rattus norvegicus GN=Fahd1 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 60/92 (65%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          ++  + +  + G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P   
Sbjct: 3  STKPLSRFWEWGKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYC 62

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           +LHHEVEL V++G++   VPE  AMDYV G+
Sbjct: 63 RNLHHEVELGVLLGRRGEAVPEAAAMDYVAGY 94

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q8R0F8|FAHD1_MOUSE Acylpyruvase FAHD1, mitochondrial OS=Mus musculus GN=Fahd1 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 60/92 (65%)

Query: 4   ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
           ++  + +  + G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P   
Sbjct: 9   STKPLSRFWEWGKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYC 68

Query: 64  DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
            +LHHEVEL V++G++   +PE  AMDYV G+
Sbjct: 69  RNLHHEVELGVLLGKRGEAIPEAAAMDYVAGY 100

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|P34673|YO23_CAEEL Uncharacterized protein ZK688.3 OS=Caenorhabditis elegans GN=ZK688.3 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 57/80 (71%)

Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
          TKIV VGRNY  HA ELGNA+PK+P+LF+K  +S++  G  I  P    +LH EVEL VV
Sbjct: 12 TKIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVV 71

Query: 76 IGQKARDVPETTAMDYVGGF 95
          I +KA  + ++ AMDY+GG+
Sbjct: 72 ISKKASRISKSDAMDYIGGY 91

Caenorhabditis elegans (taxid: 6239)

>sp|O58377|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 62/83 (74%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           TKIVA+ +NYA HA+E+G+  P+EP++FLKP S+ +G G +I +P     + HEVELAV+
Sbjct: 21  TKIVALAKNYAEHAREMGSEPPEEPIIFLKPPSALIGPGSSIILPRRSKRVDHEVELAVI 80

Query: 76  IGQKARDVPETTAMDYVGGFIFV 98
           +G++A++VP + A DY+ G+  +
Sbjct: 81  MGKRAKNVPASKAFDYILGYTII 103

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

>sp|Q9UYW0|Y1397_PYRAB Uncharacterized protein PYRAB13970 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB13970 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
          TKI+A+ +NYA HA+E+G+  P+EPV+FLKP S+ +G    I +P     + HEVELAV+
Sbjct: 16 TKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVI 75

Query: 76 IGQKARDVPETTAMDYVGGF 95
          IG++A++VP   A DY+ G+
Sbjct: 76 IGKRAKNVPAEKAFDYILGY 95

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

>sp|O28058|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +KI+AVG NY  HA+EL   VP+EP+LF+KP+++ +G+   I +P     + +E ELAVV
Sbjct: 44  SKIIAVGLNYIDHAEELNMPVPEEPILFMKPSTAVIGHDDCIILPQISQRVDYEGELAVV 103

Query: 76  IGQKARDVPETTAMDYVGGF 95
           I +  R+VPET A DY+ G+
Sbjct: 104 IAEDCRNVPETNAADYILGY 123

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255551813	226	fumarylacetoacetate hydrolase, putative	0.871	0.420	0.894	4e-43
225431770	226	PREDICTED: acylpyruvase FAHD1, mitochond	0.871	0.420	0.894	7e-42
224110404	226	predicted protein [Populus trichocarpa]	0.871	0.420	0.842	2e-41
15234757	222	fumarylacetoacetate hydrolase-like prote	0.844	0.414	0.815	6e-40
16209656	223	AT4g15940/dl4011w [Arabidopsis thaliana]	0.844	0.412	0.815	6e-40
297804628	222	AT4g15940/dl4011w [Arabidopsis lyrata su	0.844	0.414	0.804	1e-39
7485073	367	hypothetical protein - Arabidopsis thali	0.844	0.250	0.815	2e-39
145332597	170	fumarylacetoacetate hydrolase [Arabidops	0.844	0.541	0.771	2e-37
15228286	224	fumarylacetoacetate hydrolase [Arabidops	0.844	0.410	0.771	3e-37
51969474	131	putative decarboxilase [Arabidopsis thal	0.844	0.702	0.771	4e-37

>gi|255551813|ref|XP_002516952.1| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi|223544040|gb|EEF45566.1| fumarylacetoacetate hydrolase, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 90/95 (94%)

Query: 1  MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
          MATA S VQKL+Q GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL NGGTIE+P
Sbjct: 1  MATACSGVQKLLQVGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTIEIP 60

Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          HPL+SL HEVELAVVIGQKARDVP+TTAMDYVGG+
Sbjct: 61 HPLESLDHEVELAVVIGQKARDVPQTTAMDYVGGY 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431770|ref|XP_002270782.1| PREDICTED: acylpyruvase FAHD1, mitochondrial [Vitis vinifera] gi|296083339|emb|CBI22975.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (440), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 89/95 (93%)

Query: 1  MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
          MATASSA  KL+Q GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL NGGTI VP
Sbjct: 1  MATASSAYLKLLQMGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTILVP 60

Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          HPL+SLHHEVELAVVIGQKARDVPE+ AMDYVGG+
Sbjct: 61 HPLESLHHEVELAVVIGQKARDVPESAAMDYVGGY 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110404|ref|XP_002315509.1| predicted protein [Populus trichocarpa] gi|118488589|gb|ABK96107.1| unknown [Populus trichocarpa] gi|222864549|gb|EEF01680.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 89/95 (93%)

Query: 1  MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
          MA+ S+ +QKL+  GTKIVAVGRNYAAHAKELGNAVPKEPVLF+KPTSSYL NGGTIE+P
Sbjct: 1  MASPSAGIQKLLHVGTKIVAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYLENGGTIEIP 60

Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           PL+SLHHEVELAVVIGQKARDVPE+TAMDYVGG+
Sbjct: 61 QPLESLHHEVELAVVIGQKARDVPESTAMDYVGGY 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234757|ref|NP_193329.1| fumarylacetoacetate hydrolase-like protein [Arabidopsis thaliana] gi|5302783|emb|CAB46032.1| isomerase like protein [Arabidopsis thaliana] gi|7268342|emb|CAB78636.1| isomerase like protein [Arabidopsis thaliana] gi|332658268|gb|AEE83668.1| fumarylacetoacetate hydrolase-like protein [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 86/92 (93%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELA+VIGQKARDVPE+ AMDY+GG+
Sbjct: 62 DSLHHEVELALVIGQKARDVPESIAMDYIGGY 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16209656|gb|AAL14388.1| AT4g15940/dl4011w [Arabidopsis thaliana] gi|21593651|gb|AAM65618.1| isomerase like protein [Arabidopsis thaliana] gi|58331823|gb|AAW70409.1| At4g15940 [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 86/92 (93%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELA+VIGQKARDVPE+ AMDY+GG+
Sbjct: 62 DSLHHEVELALVIGQKARDVPESIAMDYIGGY 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804628|ref|XP_002870198.1| AT4g15940/dl4011w [Arabidopsis lyrata subsp. lyrata] gi|297316034|gb|EFH46457.1| AT4g15940/dl4011w [Arabidopsis lyrata subsp. lyrata]

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 86/92 (93%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q++ + GTKIV VGRNYAAHAKELGN+VPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNSVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELA+VIGQKARDVPE+ AMDY+GG+
Sbjct: 62 DSLHHEVELALVIGQKARDVPESIAMDYIGGY 93

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7485073|pir||C71425 hypothetical protein - Arabidopsis thaliana

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/92 (81%), Positives = 86/92 (93%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELA+VIGQKARDVPE+ AMDY+GG+
Sbjct: 62 DSLHHEVELALVIGQKARDVPESIAMDYIGGY 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332597|ref|NP_001078164.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana] gi|332642333|gb|AEE75854.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 84/92 (91%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELAVVIGQKARDVPE  AM+Y+GG+
Sbjct: 62 DSLHHEVELAVVIGQKARDVPERLAMNYIGGY 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228286|ref|NP_188292.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana] gi|11994625|dbj|BAB02762.1| isomerase-like protein [Arabidopsis thaliana] gi|21593084|gb|AAM65033.1| putative decarboxilase [Arabidopsis thaliana] gi|332642332|gb|AEE75853.1| fumarylacetoacetate hydrolase [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 84/92 (91%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELAVVIGQKARDVPE  AM+Y+GG+
Sbjct: 62 DSLHHEVELAVVIGQKARDVPERLAMNYIGGY 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969474|dbj|BAD43429.1| putative decarboxilase [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 84/92 (91%)

Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct: 2  ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
          DSLHHEVELAVVIGQKARDVPE  AM+Y+GG+
Sbjct: 62 DSLHHEVELAVVIGQKARDVPERLAMNYIGGY 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2129815	222	AT4G15940 [Arabidopsis thalian	0.844	0.414	0.815	3.4e-38
TAIR|locus:2089373	224	AT3G16700 [Arabidopsis thalian	0.844	0.410	0.771	4.4e-36
DICTYBASE|DDB_G0275071	218	fahd1 "Fumarylacetoacetate (FA	0.807	0.403	0.606	3.3e-24
ZFIN|ZDB-GENE-050522-448	219	fahd1 "fumarylacetoacetate hyd	0.816	0.406	0.516	1e-20
UNIPROTKB|Q6P587	224	FAHD1 "Acylpyruvase FAHD1, mit	0.844	0.410	0.510	4.4e-20
UNIPROTKB|Q5RDW0	224	FAHD1 "Acylpyruvase FAHD1, mit	0.844	0.410	0.510	4.4e-20
UNIPROTKB|Q2HJ98	221	FAHD1 "Acylpyruvase FAHD1, mit	0.844	0.416	0.5	7.2e-20
WB|WBGene00022798	214	fahd-1 [Caenorhabditis elegans	0.733	0.373	0.537	1.4e-18
RGD|1304560	221	Fahd1 "fumarylacetoacetate hyd	0.743	0.366	0.518	2.8e-18
UNIPROTKB|Q6AYQ8	221	Fahd1 "Acylpyruvase FAHD1, mit	0.743	0.366	0.518	2.8e-18

TAIR|locus:2129815 AT4G15940 [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 75/92 (81%), Positives = 86/92 (93%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             A+S +Q++ + GTKIV VGRNYAAHAKELGNAVPKEPV+FLKPTSSYL NGGTIE+PHPL
Sbjct:     2 ATSMIQRMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPL 61

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
             DSLHHEVELA+VIGQKARDVPE+ AMDY+GG+
Sbjct:    62 DSLHHEVELALVIGQKARDVPESIAMDYIGGY 93

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2089373 AT3G16700 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 71/92 (77%), Positives = 84/92 (91%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             A+S +Q+L + GTKIV VG NYA+HAKELGNA+PK+P++FLKPTSSYL NGGTIE+PHPL
Sbjct:     2 ATSMIQRLFKQGTKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPL 61

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
             DSLHHEVELAVVIGQKARDVPE  AM+Y+GG+
Sbjct:    62 DSLHHEVELAVVIGQKARDVPERLAMNYIGGY 93

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

DICTYBASE|DDB_G0275071 fahd1 "Fumarylacetoacetate (FAA) hydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 54/89 (60%), Positives = 64/89 (71%)

Query:     8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNG-GTIEVPHPLDSL 66
             + K  + G KIVAVGRNYA HAKELGN +P EP  FLKPTSSYL  G G IE+P     +
Sbjct:     1 MNKFWETGRKIVAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDI 60

Query:    67 HHEVELAVVIGQKARDVPETTAMDYVGGF 95
             HHEVEL +VIG+K RD+   +AMDYV G+
Sbjct:    61 HHEVELGIVIGKKGRDIDLKSAMDYVSGY 89

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050522-448 fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 46/89 (51%), Positives = 62/89 (69%)

Query:     8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
             + +  + G KI+ VGRNYA HA EL NA+P EPVLFLKP S+Y+  G  I VP    +LH
Sbjct:     6 ISRFWEWGRKIICVGRNYADHAVELKNAIPSEPVLFLKPPSAYIKKGSPILVPFYSSNLH 65

Query:    68 HEVELAVVIGQKARDVPETTAMDYVGGFI 96
             HEVEL VVIG+    +P+ +AM++V G++
Sbjct:    66 HEVELGVVIGKGGTAIPQASAMEHVAGYV 94

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q6P587 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 47/92 (51%), Positives = 63/92 (68%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct:     6 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
              +LHHE+EL VV+G++ R VPE  AMDYVGG+
Sbjct:    66 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGY 97

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=IDA

GO:0018773 "acetylpyruvate hydrolase activity" evidence=IDA

UNIPROTKB|Q5RDW0 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 47/92 (51%), Positives = 63/92 (68%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct:     6 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 65

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
              +LHHE+EL VV+G++ R VPE  AMDYVGG+
Sbjct:    66 RNLHHELELGVVMGRRCRAVPEAAAMDYVGGY 97

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

UNIPROTKB|Q2HJ98 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 46/92 (50%), Positives = 62/92 (67%)

Query:     4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
             AS  + +  + G  IV VGRNYA H +E+ +A P EPVLFLKP+++Y   G  + VP   
Sbjct:     3 ASRPLSRFWEWGKNIVCVGRNYADHVREMQSAAPSEPVLFLKPSTAYAPEGSPVLVPAYT 62

Query:    64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
              +LHHE+ELAVV+G++ R V E  AMDYV G+
Sbjct:    63 RNLHHELELAVVMGKRCRAVSEAAAMDYVAGY 94

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00022798 fahd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/80 (53%), Positives = 57/80 (71%)

Query:    16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
             TKIV VGRNY  HA ELGNA+PK+P+LF+K  +S++  G  I  P    +LH EVEL VV
Sbjct:    12 TKIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVV 71

Query:    76 IGQKARDVPETTAMDYVGGF 95
             I +KA  + ++ AMDY+GG+
Sbjct:    72 ISKKASRISKSDAMDYIGGY 91

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

RGD|1304560 Fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/81 (51%), Positives = 55/81 (67%)

Query:    15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
             G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P    +LHHEVEL V
Sbjct:    14 GKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYCRNLHHEVELGV 73

Query:    75 VIGQKARDVPETTAMDYVGGF 95
             ++G++   VPE  AMDYV G+
Sbjct:    74 LLGRRGEAVPEAAAMDYVAGY 94

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

UNIPROTKB|Q6AYQ8 Fahd1 "Acylpyruvase FAHD1, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/81 (51%), Positives = 55/81 (67%)

Query:    15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
             G  IV VGRNYA H KE+ + V  EPVLFLKP+++Y   G  + +P    +LHHEVEL V
Sbjct:    14 GKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYCRNLHHEVELGV 73

Query:    75 VIGQKARDVPETTAMDYVGGF 95
             ++G++   VPE  AMDYV G+
Sbjct:    74 LLGRRGEAVPEAAAMDYVAGY 94

GO:0005743 "mitochondrial inner membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
COG0179	266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	2e-30
pfam01557	207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	3e-24
TIGR02303	245	TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg	3e-23
PRK10691	219	PRK10691, PRK10691, hypothetical protein; Provisio	4e-19
PRK15203	429	PRK15203, PRK15203, 4-hydroxyphenylacetate degrada	2e-17
PRK12764	500	PRK12764, PRK12764, hypothetical protein; Provisio	5e-12
TIGR02305	205	TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate deg	4e-10
PRK15203	429	PRK15203, PRK15203, 4-hydroxyphenylacetate degrada	0.002

>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  108 bits (272), Expect = 2e-30
 Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 17  KIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
           KIV VGRNYA HA+E+G    +P+EPV FLKP ++ +G    I +P     L +E ELAV
Sbjct: 61  KIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAV 120

Query: 75  VIGQKARDVPETTAMDYVGGF 95
           VIG++ +DV    A+DY+ G+
Sbjct: 121 VIGKRGKDVSVEDALDYIAGY 141

Length = 266

>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family

 Score = 91.2 bits (227), Expect = 3e-24
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 17 KIVAVGRNYAAHAKELGNAVPKE----PVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVEL 72
          KI+ VG NY +HAKELG+ V       PV FLKP S+ +G G  I +P   + L +E EL
Sbjct: 1  KIIGVGLNYTSHAKELGSGVEPPDYGPPVFFLKPPSALVGPGDPIVLPRGSERLDYEAEL 60

Query: 73 AVVIGQKARDVPETTAMDYVGGF 95
          AVVIG+  R V    A+DYV G+
Sbjct: 61 AVVIGKDLRAVTPEEALDYVAGY 83

This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase, encoded by mhpD in E. coli, is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase. Length = 207

>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

 Score = 89.1 bits (221), Expect = 3e-23
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
            I A+G NYA HA ELG + P+EP++FLK  ++  G+ G    P  +  +H+E ELAVV+
Sbjct: 44  TIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVV 103

Query: 77  GQKARDVPETTAMDYVGGF 95
           G+ A++V    AMDYV G+
Sbjct: 104 GKTAKNVKREDAMDYVLGY 122

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 245

>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional

 Score = 77.8 bits (192), Expect = 4e-19
 Identities = 35/80 (43%), Positives = 49/80 (61%)

Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
          +K+V VG NYA H KE+G+A P+EPVLF+KP ++       + +P    S+HHEVELAV+
Sbjct: 17 SKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVL 76

Query: 76 IGQKARDVPETTAMDYVGGF 95
          IG   R   E      + G+
Sbjct: 77 IGATLRQATEEHVRKAIAGY 96

Length = 219

>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

 Score = 75.5 bits (185), Expect = 2e-17
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query: 1   MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
           + T  S        GT + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P
Sbjct: 209 VTTHKSFPTPPHPHGT-LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRP 267

Query: 61  HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           + ++ +H+E EL VVIG++AR V E  AMDYV G+
Sbjct: 268 NNIEYMHYEAELVVVIGKQARKVSEADAMDYVAGY 302

Length = 429

>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 5e-12
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 8  VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
          V  L+    K++AV  NY + A + G   P +P  FLKP+SS   +GGT+E P   + L 
Sbjct: 14 VAPLLARPGKVIAVHLNYPSRAAQRGRT-PAQPSYFLKPSSSLALSGGTVERPAGTELLA 72

Query: 68 HEVELAVVIGQKARDVPETTAMDYVGG 94
           E E+A+VIG+ AR V    A  +V  
Sbjct: 73 FEGEIALVIGRPARRVSPEDAWSHVAA 99

Length = 500

>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 17 KIVAVGRNYAAHAKELGNAV--------PKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
           +  V  NY      L  A         PK PVL++KP +++ G G  I +P  ++ L  
Sbjct: 2  TVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRS 61

Query: 69 EVELAVVIGQKARDVPETTAMDYVGGFIFV 98
             LA+V+G+ A  V E  A+DYV G+  V
Sbjct: 62 GATLALVVGRTACRVREEEALDYVAGYALV 91

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 205

>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 34 NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVG 93
           A PK  V F+KP ++ +  G  I  P   + +     +A+++G+ A  V E  A +Y+ 
Sbjct: 29 KAPPKTAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIA 87

Query: 94 GF 95
          G+
Sbjct: 88 GY 89

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
COG0179	266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
TIGR02303	245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535	217	consensus Predicted fumarylacetoacetate hydralase	99.98
PRK10691	219	hypothetical protein; Provisional	99.97
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.96
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.96
TIGR02305	205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	99.94
PRK12764	500	hypothetical protein; Provisional	99.93
PLN02856	424	fumarylacetoacetase	99.91
PF01557	218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	99.87
TIGR01266	415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	99.86
KOG2843	420	consensus Fumarylacetoacetase [Carbohydrate transp	99.1
TIGR03220	255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	98.09
COG3970	379	Fumarylacetoacetate (FAA) hydrolase family protein	97.33
PRK11342	262	mhpD 2-keto-4-pentenoate hydratase; Provisional	97.3
TIGR02312	267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	96.98
COG3971	264	2-keto-4-pentenoate hydratase [Secondary metabolit	92.69
COG3802	333	GguC Uncharacterized protein conserved in bacteria	92.16
TIGR03218	263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	88.82

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.6e-34  Score=220.02  Aligned_cols=100  Identities=39%  Similarity=0.641  Sum_probs=94.3

Q ss_pred             hhhhhcccCCCeEEEEccccHHHHHHhCCC--CCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC
Q 033892            6 SAVQKLIQAGTKIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV   83 (109)
Q Consensus         6 ~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~--~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i   83 (109)
                      +.+..++++++||+|+|+||++|++|++..  .|+.|++|+|++++++++++++.+|..+.++|||+||||||||+++++
T Consensus        50 ~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v  129 (266)
T COG0179          50 VRLLAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDV  129 (266)
T ss_pred             cccccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCC
Confidence            445667778899999999999999999875  799999999999999999999999999999999999999999999999


Q ss_pred             ChhhHhhhhceeEEEeecccCC
Q 033892           84 PETTAMDYVGGFIFVKILLLLF  105 (109)
Q Consensus        84 s~~~A~~~I~Gyti~ND~s~~~  105 (109)
                      ++++|++||+|||++||||+|=
T Consensus       130 ~~e~A~d~I~GYti~nD~T~Rd  151 (266)
T COG0179         130 SVEDALDYIAGYTIGNDVTARD  151 (266)
T ss_pred             CHHHHHhhheEEeeeeecchhc
Confidence            9999999999999999999984

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

Probab=100.00  E-value=4.6e-34  Score=216.24  Aligned_cols=101  Identities=36%  Similarity=0.548  Sum_probs=94.4

Q ss_pred             ccchhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCC
Q 033892            3 TASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARD   82 (109)
Q Consensus         3 ~~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~   82 (109)
                      .+++.+..+++ |+||+|+|.||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||++++
T Consensus        31 ~~~v~ll~P~~-p~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~  109 (245)
T TIGR02303        31 PEQVTWLPPFE-PGTIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKN  109 (245)
T ss_pred             cccceEcCCCC-CCeEEEEeCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCC
Confidence            34566666664 68999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             CChhhHhhhhceeEEEeecccC
Q 033892           83 VPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        83 is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      +++++|++||+|||++||||+|
T Consensus       110 v~~~~A~~~I~Gytv~nD~T~R  131 (245)
T TIGR02303       110 VKREDAMDYVLGYTIANDYAIR  131 (245)
T ss_pred             CCHHHHhhheeEEEEEeecchH
Confidence            9999999999999999999998

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]

Probab=99.98  E-value=1.4e-32  Score=202.32  Aligned_cols=102  Identities=53%  Similarity=0.777  Sum_probs=98.7

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV   83 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i   83 (109)
                      +++++..++..++||+|+|+||.+|++|++.+.|++|+||.|+.+++++++++|.+|...+.+|||+||++||||.|+++
T Consensus         1 ~~~~~~~~~~~~~KIVcVg~NY~dh~~E~~~~~PkeP~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v   80 (217)
T KOG1535|consen    1 ADVMLLRPLKWPTKIVCVGRNYADHCKELNNPVPKEPFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSV   80 (217)
T ss_pred             CccchhhhhhcCCeEEEecccHHHHHHHhCCCCCCCCeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHhhhhceeEEEeecccCC
Q 033892           84 PETTAMDYVGGFIFVKILLLLF  105 (109)
Q Consensus        84 s~~~A~~~I~Gyti~ND~s~~~  105 (109)
                      ++.+|++||+||+++.|+|+|-
T Consensus        81 ~~~~amd~v~Gy~valDmtARd  102 (217)
T KOG1535|consen   81 KKKDAMDYVGGYAVALDMTARD  102 (217)
T ss_pred             ChhhcccccccEEEEeeccchh
Confidence            9999999999999999999974

>PRK10691 hypothetical protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=194.59  Aligned_cols=90  Identities=41%  Similarity=0.663  Sum_probs=87.6

Q ss_pred             CCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhhce
Q 033892           15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG   94 (109)
Q Consensus        15 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I~G   94 (109)
                      .+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|....++|||+|||+||||+++++++++|++||+|
T Consensus        16 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~~~V~g   95 (219)
T PRK10691         16 VSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVRKAIAG   95 (219)
T ss_pred             CCcEEEEecCHHHHHHHhCCCCCCCCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHhhhheE
Confidence            49999999999999999999889999999999999999999999999988999999999999999999999999999999


Q ss_pred             eEEEeecccC
Q 033892           95 FIFVKILLLL  104 (109)
Q Consensus        95 yti~ND~s~~  104 (109)
                      |+++||+|+|
T Consensus        96 yt~~nDvt~r  105 (219)
T PRK10691         96 YGVALDLTLR  105 (219)
T ss_pred             EEEEEEeEhh
Confidence            9999999986

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.96  E-value=1.1e-29  Score=204.95  Aligned_cols=97  Identities=37%  Similarity=0.584  Sum_probs=92.4

Q ss_pred             hhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhh
Q 033892            8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT   87 (109)
Q Consensus         8 ~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~   87 (109)
                      +..++++++||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+.++.+|||+|||+||||+++++++++
T Consensus       215 ~~~p~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~e  294 (429)
T PRK15203        215 FPTPPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEAD  294 (429)
T ss_pred             cccCCCCCCeEEEEcCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHH
Confidence            44566678999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhceeEEEeecccC
Q 033892           88 AMDYVGGFIFVKILLLL  104 (109)
Q Consensus        88 A~~~I~Gyti~ND~s~~  104 (109)
                      |++||+||+++||+|+|
T Consensus       295 a~~~V~Gy~~~nD~t~r  311 (429)
T PRK15203        295 AMDYVAGYTVCNDYAIR  311 (429)
T ss_pred             HhhheeEEEEEEeccch
Confidence            99999999999999997

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.96  E-value=8.6e-29  Score=199.86  Aligned_cols=88  Identities=26%  Similarity=0.454  Sum_probs=82.6

Q ss_pred             CeEEEEccccHHHHHHhC--------CCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhh
Q 033892           16 TKIVAVGRNYAAHAKELG--------NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT   87 (109)
Q Consensus        16 ~ki~~vg~Ny~~h~~e~~--------~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~   87 (109)
                      +||+|+|+||++|.+|++        .+.|+.|++|+|+++++++++++|.+|.. .++|||+||++||||+|+++++++
T Consensus         3 ~ki~~vg~Ny~~~~~~~~~~~~~~~~~~~p~~P~~F~Kp~~al~g~~~~i~~P~~-~~~~~E~EL~vvIGk~~~~v~~~~   81 (429)
T PRK15203          3 GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREED   81 (429)
T ss_pred             ceEEEEeCchHHHHHhhhhhccccccCCCCCCCEEEecCcceeeCCCCcEECCCC-CCceEEEEEEEEECCccCCCCHHH
Confidence            699999999999999865        24689999999999999999999999987 469999999999999999999999


Q ss_pred             HhhhhceeEEEeecccC
Q 033892           88 AMDYVGGFIFVKILLLL  104 (109)
Q Consensus        88 A~~~I~Gyti~ND~s~~  104 (109)
                      |++||+|||++||+|+|
T Consensus        82 A~~~V~Gyti~nD~t~r   98 (429)
T PRK15203         82 AAEYIAGYALANDVSLP   98 (429)
T ss_pred             HhhheeEEEEEEEeech
Confidence            99999999999999987

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

Probab=99.94  E-value=7.3e-27  Score=172.34  Aligned_cols=89  Identities=35%  Similarity=0.586  Sum_probs=84.1

Q ss_pred             CeEEEEccccHHHHHHhCC--------CCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhh
Q 033892           16 TKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT   87 (109)
Q Consensus        16 ~ki~~vg~Ny~~h~~e~~~--------~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~   87 (109)
                      +||+|+|.||++|++|++.        +.|+.|.+|+|+++++.+++++|.+|.....++||+|||+||||+++++++++
T Consensus         1 ~~i~~vg~ny~~h~~~~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~   80 (205)
T TIGR02305         1 GTVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEE   80 (205)
T ss_pred             CcEEEEeCcHHHHHHHhcccccccccCCCCCCCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHH
Confidence            5899999999999999984        46899999999999999999999999987889999999999999999999999


Q ss_pred             HhhhhceeEEEeecccC
Q 033892           88 AMDYVGGFIFVKILLLL  104 (109)
Q Consensus        88 A~~~I~Gyti~ND~s~~  104 (109)
                      |++||+||+++||+|++
T Consensus        81 a~~~v~g~~~~~dit~~   97 (205)
T TIGR02305        81 ALDYVAGYALVNDVSLP   97 (205)
T ss_pred             HHHhhheeEEeeeeehh
Confidence            99999999999999864

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>PRK12764 hypothetical protein; Provisional

Probab=99.93  E-value=3.4e-26  Score=187.71  Aligned_cols=97  Identities=36%  Similarity=0.488  Sum_probs=90.8

Q ss_pred             hhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChh
Q 033892            7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (109)
Q Consensus         7 ~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~   86 (109)
                      +...+...++||+|+|+||++|++|++. .|+.|++|+|+++++.+++++|.+|.....+|||+||++||||++++++++
T Consensus        13 ~~~~~~~~p~kIi~vg~Ny~~ha~e~~~-~p~~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~e   91 (500)
T PRK12764         13 VVAPLLARPGKVIAVHLNYPSRAAQRGR-TPAQPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPE   91 (500)
T ss_pred             cccCCCCCCCcEEEECCCCHHHHHHhCC-CCCCCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHH
Confidence            4466667789999999999999999986 489999999999999999999999998889999999999999999999999


Q ss_pred             hHhhhhceeEEEeecccC
Q 033892           87 TAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        87 ~A~~~I~Gyti~ND~s~~  104 (109)
                      +|++||+||+++||+|++
T Consensus        92 ea~~~I~Gyt~~nDvt~r  109 (500)
T PRK12764         92 DAWSHVAAVTAANDLGVY  109 (500)
T ss_pred             HHHhhheEEEEecceeee
Confidence            999999999999999986

>PLN02856 fumarylacetoacetase

Probab=99.91  E-value=6.7e-25  Score=176.81  Aligned_cols=99  Identities=19%  Similarity=0.260  Sum_probs=87.0

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHhCCC--------CCC---CCEEEecCCCCcccCCCcEeecCC----------
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNA--------VPK---EPVLFLKPTSSYLGNGGTIEVPHP----------   62 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~--------~p~---~P~~f~K~~~~i~~~~~~i~~P~~----------   62 (109)
                      +++.+..++ +++++.|. .||++|+.+++..        .|.   .|++|.|+++++++++++|.+|..          
T Consensus       117 ~~v~l~~P~-~~~~~~df-~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~  194 (424)
T PLN02856        117 SDVEMLLPA-VIGDYTDF-FSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSR  194 (424)
T ss_pred             hhceEcCCC-ccceEEEE-ecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCC
Confidence            345666666 67899898 9999999998642        133   499999999999999999999974          


Q ss_pred             -----CCCcccceeEEEEECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892           63 -----LDSLHHEVELAVVIGQK---ARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        63 -----~~~ld~E~ELavVIGk~---~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                           ++++|||+||++||||.   |++|++++|++||+|||++||||+|
T Consensus       195 p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR  244 (424)
T PLN02856        195 PYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR  244 (424)
T ss_pred             CcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence                 77899999999999997   8999999999999999999999997

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I

Probab=99.87  E-value=2.8e-22  Score=148.12  Aligned_cols=88  Identities=41%  Similarity=0.656  Sum_probs=80.2

Q ss_pred             eEEEEccccHHHHHHhCC---CCC-----CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC-Chhh
Q 033892           17 KIVAVGRNYAAHAKELGN---AVP-----KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV-PETT   87 (109)
Q Consensus        17 ki~~vg~Ny~~h~~e~~~---~~p-----~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i-s~~~   87 (109)
                      ||+|+|.||.+|++|++.   +.|     ..|++|.|+++++.+++++|.+|..+..++||+||+++|||+++++ ++++
T Consensus         1 ~v~~~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~e   80 (218)
T PF01557_consen    1 KVVGVGLNYTSHAEEAGAGDVDEPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEE   80 (218)
T ss_dssp             EEEEEESEBHHHHHHTTTTCSSTTSEECECSGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHH
T ss_pred             CEEEEeEchHHHHHHhCcCCCCCCccccccCCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHH
Confidence            799999999999999873   334     3889999999999999999999999899999999999999999999 9999


Q ss_pred             HhhhhceeEEEeecccC
Q 033892           88 AMDYVGGFIFVKILLLL  104 (109)
Q Consensus        88 A~~~I~Gyti~ND~s~~  104 (109)
                      |++||+||+++||||.|
T Consensus        81 a~~~i~g~~~~~d~~~r   97 (218)
T PF01557_consen   81 ALDAIAGYTPANDVTAR   97 (218)
T ss_dssp             HGGGEEEEEEEEEEEEH
T ss_pred             HHHHhhEEeeecccchh
Confidence            99999999999999975

; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....

>TIGR01266 fum_ac_acetase fumarylacetoacetase

Probab=99.86  E-value=4.7e-22  Score=160.07  Aligned_cols=90  Identities=20%  Similarity=0.239  Sum_probs=80.3

Q ss_pred             CCeE--EEEccccHHHHHHhCCC-------C----CCCCEEEecCCCCcccCCCcEeecCC--------------CCCcc
Q 033892           15 GTKI--VAVGRNYAAHAKELGNA-------V----PKEPVLFLKPTSSYLGNGGTIEVPHP--------------LDSLH   67 (109)
Q Consensus        15 ~~ki--~~vg~Ny~~h~~e~~~~-------~----p~~P~~f~K~~~~i~~~~~~i~~P~~--------------~~~ld   67 (109)
                      |.+|  +....+|.+|+.+.+.-       .    .+.|++|.|++++++++|++|.+|..              ++.+|
T Consensus       117 P~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD  196 (415)
T TIGR01266       117 PAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLD  196 (415)
T ss_pred             CccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceE
Confidence            4455  77899999999998521       1    26899999999999999999999975              78899


Q ss_pred             cceeEEEEECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892           68 HEVELAVVIGQK---ARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        68 ~E~ELavVIGk~---~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ||+||++||||.   |++|++++|++||+||+++||||+|
T Consensus       197 ~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SAR  236 (415)
T TIGR01266       197 MELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSAR  236 (415)
T ss_pred             EEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchh
Confidence            999999999998   8999999999999999999999997

This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=4.5e-11  Score=93.14  Aligned_cols=67  Identities=24%  Similarity=0.322  Sum_probs=60.8

Q ss_pred             CCCEEEecCCCCcccCCCcEeecC--------------CCCCcccceeEEEEECCC----CCCCChhhHhhhhceeEEEe
Q 033892           38 KEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK----ARDVPETTAMDYVGGFIFVK   99 (109)
Q Consensus        38 ~~P~~f~K~~~~i~~~~~~i~~P~--------------~~~~ld~E~ELavVIGk~----~~~is~~~A~~~I~Gyti~N   99 (109)
                      .-|+-|....++++-+|.||.+|-              .++.+|+|.|+|+.||-+    +..|+.++|+++|+|+++.|
T Consensus       154 hLPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMN  233 (420)
T KOG2843|consen  154 HLPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMN  233 (420)
T ss_pred             cccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEec
Confidence            579999999999999999999984              257899999999999955    56799999999999999999


Q ss_pred             ecccC
Q 033892          100 ILLLL  104 (109)
Q Consensus       100 D~s~~  104 (109)
                      |||+|
T Consensus       234 DWSAR  238 (420)
T KOG2843|consen  234 DWSAR  238 (420)
T ss_pred             ccchh
Confidence            99997

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase

Probab=98.09  E-value=2.3e-05  Score=59.74  Aligned_cols=81  Identities=16%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             EEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHh---hhhce
Q 033892           20 AVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAM---DYVGG   94 (109)
Q Consensus        20 ~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~---~~I~G   94 (109)
                      -+|..-..-.+.++.   ..|++=.-..+.+..++.++.++... +.++|+||+++|||++  ++++.+|++   ++|++
T Consensus        56 K~g~ts~~~~~~~gv---~~P~~g~l~~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~~  131 (255)
T TIGR03220        56 KIGVTSKAVMNMLGV---YQPDFGYLLDGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVMP  131 (255)
T ss_pred             EEecCCHHHHHHhCC---CCCcEEEeeccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhheee
Confidence            344443444344444   36765555556667788888888753 7999999999999996  689999766   56666


Q ss_pred             eEEEeecccC
Q 033892           95 FIFVKILLLL  104 (109)
Q Consensus        95 yti~ND~s~~  104 (109)
                      +.-.||.+.+
T Consensus       132 ~~El~D~r~~  141 (255)
T TIGR03220       132 CFEIVDSRIR  141 (255)
T ss_pred             eEEEcccccc
Confidence            6777788765

Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]

Probab=97.33  E-value=0.00029  Score=55.78  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             CEEEec-CCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhhceeEEEeecccC
Q 033892           40 PVLFLK-PTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        40 P~~f~K-~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      +-+|.| ++.+-+|+|+.|-+...++....|-|+++++...++          |.|||++||+++|
T Consensus       169 aEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlR  224 (379)
T COG3970         169 AEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLR  224 (379)
T ss_pred             hhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCccccc
Confidence            445554 577889999999887777778999999999999988          9999999999987

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional

Probab=97.30  E-value=0.0016  Score=49.85  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             EEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCC--CCChhhHhhhhcee
Q 033892           18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGF   95 (109)
Q Consensus        18 i~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~is~~~A~~~I~Gy   95 (109)
                      =|.+|.+..+..+.++...|-...+|.   +.+..++..+.++.. .....|+||++++||+..  +++.+|+.++|.++
T Consensus        58 G~K~G~ts~~~~~~~gv~~P~~g~l~~---~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v  133 (262)
T PRK11342         58 GRKVGLTHPKVQQQLGVDQPDFGTLFA---DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWV  133 (262)
T ss_pred             EEEecCCCHHHHHHhCCCCCCcccccc---hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceE
Confidence            378888888888888876555555555   456667777766554 357889999999999864  78999999999999


Q ss_pred             EEEeecc
Q 033892           96 IFVKILL  102 (109)
Q Consensus        96 ti~ND~s  102 (109)
                      ..+-.+-
T Consensus       134 ~paiEiv  140 (262)
T PRK11342        134 LPALEVV  140 (262)
T ss_pred             eeeEEec
Confidence            8775554

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase

Probab=96.98  E-value=0.0075  Score=46.33  Aligned_cols=65  Identities=18%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeEEEeeccc
Q 033892           38 KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFIFVKILLL  103 (109)
Q Consensus        38 ~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyti~ND~s~  103 (109)
                      ..|++=.-..+.+...+..+... ...+.-.|+||++++|++.  .+.+.+|++++|.++..+-++..
T Consensus        76 ~~P~~g~l~~~~~~~~g~~~~~~-~~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEi~d  142 (267)
T TIGR02312        76 DEPDYGVLLDDMFFEDGSTIPAD-RFIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVVPALEIID  142 (267)
T ss_pred             CCCeeEEecCccccCCCCeeccc-cccccccceEEEEEECCCCCCCCCCHHHHHHHhheEEeeEEEee
Confidence            36776566666777777777664 2345789999999999987  47899999999999998888764

This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.69  E-value=0.2  Score=38.87  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=49.6

Q ss_pred             EccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeE
Q 033892           21 VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFI   96 (109)
Q Consensus        21 vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyt   96 (109)
                      +|+.-+.+-+.++..-|..=.+|   .......+.+|+++.... ..+|+||+++++|+.  .++|..|+++||.-+.
T Consensus        62 vglts~a~q~~~~v~epd~G~lf---d~m~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~  135 (264)
T COG3971          62 VGLTSPAMQQQLGVDEPDYGTLF---DDMAFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVL  135 (264)
T ss_pred             eccCCHHHHHHcCCCCcchhhhh---HhHHhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhh
Confidence            56666666666665433332333   334556677777776543 499999999999995  4899999999986444

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.16  E-value=0.15  Score=39.81  Aligned_cols=58  Identities=22%  Similarity=0.309  Sum_probs=46.9

Q ss_pred             CCCEEEecC-CCCcccCCCcEeecCCCCCcccceeEE--EEECCCCCCCChhhHhhhhceeEEEeeccc
Q 033892           38 KEPVLFLKP-TSSYLGNGGTIEVPHPLDSLHHEVELA--VVIGQKARDVPETTAMDYVGGFIFVKILLL  103 (109)
Q Consensus        38 ~~P~~f~K~-~~~i~~~~~~i~~P~~~~~ld~E~ELa--vVIGk~~~~is~~~A~~~I~Gyti~ND~s~  103 (109)
                      -+|-+|.|- .+.++.+|.+++.|.....---|.||+  -+||.++..        |=.||+++|.+|.
T Consensus       139 vQPEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSD  199 (333)
T COG3802         139 VQPEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSD  199 (333)
T ss_pred             cCcceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhh
Confidence            489887776 466788899999998877777788886  678988764        4789999999986

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase

Probab=88.82  E-value=4.1  Score=31.18  Aligned_cols=60  Identities=15%  Similarity=0.057  Sum_probs=42.0

Q ss_pred             CCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeEEEe
Q 033892           39 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFIFVK   99 (109)
Q Consensus        39 ~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyti~N   99 (109)
                      .|++=.-..+.+..++..+..... .+.-.|.|+++++|++.  .+.+.++++++|..+..+-
T Consensus        80 ~P~~g~l~~~~~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~pai  141 (263)
T TIGR03218        80 TPVFGFLVDYFSVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAV  141 (263)
T ss_pred             CCeeeeecccccccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeE
Confidence            566544444455555666554433 34689999999999975  5788999999988776554

Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
1saw_A	225	X-Ray Structure Of Homo Sapiens Protein Flj36880 Le		8e-23
3rr6_A	265	Structure Of A Putative Uncharacterized Protein Fro		7e-17
3v77_A	224	Crystal Structure Of A Putative Fumarylacetoacetate		5e-15
1i7o_A	429	Crystal Structure Of Hpce Length = 429		9e-15
1nr9_A	223	Crystal Structure Of Escherichia Coli 1262 (Apc5008		2e-14
1wzo_A	246	Crystal Structure Of The Hpce From Thermus Thermoph		7e-14
2dfu_A	264	Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1		8e-13
3s52_A	221	Crystal Structure Of A Putative Fumarylacetoacetate		7e-12
3qdf_A	268	Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-D		2e-11
1nkq_A	259	Crystal Structure Of Yeast Ynq8, A Fumarylacetoacet		2e-11
4dbf_A	288	Crystal Structures Of Cg1458 Length = 288		4e-08
3r6o_A	329	Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-		2e-06

>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880 Length = 225

Iteration: 1
 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 63/92 (68%)
Query: 4  ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
          AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P   
Sbjct: 7  ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 66
Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           +LHHE+EL VV+G++ R VPE  AMDYVGG+
Sbjct: 67 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGY 98

>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 56/80 (70%)
Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +K+VA+G+NYAAHA E+G   P+ PV+F+KP +S +G G  I++P     +HHE ELA+V
Sbjct: 65  SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIV 124
Query: 76  IGQKARDVPETTAMDYVGGF 95
           IG+  +DVP   A + + G+
Sbjct: 125 IGRPCKDVPAARAAENILGY 144

>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA Length = 224

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
          KIV VGRNYAAHAKEL N +P  P+LF+KP SS +  G    +P    S+HHE+E+A++I
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77 GQ 78
          G+
Sbjct: 77 GK 78

>pdb|1I7O|A Chain A, Crystal Structure Of Hpce Length = 429

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 18  IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
           + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVIG
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284
Query: 78  QKARDVPETTAMDYVGGF 95
           ++AR+V E  AMDYV G+
Sbjct: 285 KQARNVSEADAMDYVAGY 302

>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008), Putative Isomerase Length = 223

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
          +K+V VG NYA H KE G+AVP+EPVLF+KP ++       + +P    S+HHEVELAV+
Sbjct: 19 SKVVCVGSNYAKHIKEXGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVL 78
Query: 76 IGQKARDVPETTAMDYVGGF 95
          IG   R   E      + G+
Sbjct: 79 IGATLRQATEEHVRKAIAGY 98

>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus Hb8 Length = 246

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%)
Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           KI+ V  NYA HA+ELG + P+EP LF KP +S L + G +  P     +H+EVELAVV+
Sbjct: 45  KILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVV 104
Query: 77  GQKARDVPETTAMDYVGGFIFVKILL 102
           G+  + V    A+DYV G+     L+
Sbjct: 105 GRPMKRVRAKDALDYVLGYTIANDLV 130

>pdb|2DFU|A Chain A, Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 13/93 (13%)
Query: 16  TKIVAVGRNYAAHAKELGNA----VPKEPVLFLKPTSSYLGNG------GTIE-VPHPL- 63
           TKIV VGRNY  H +E+G+     +PKEP LFLK  ++    G      GT E VP+P  
Sbjct: 48  TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 64  -DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
            + LH+E ELAVV+G + R VP   A+D+V G+
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGY 140

>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate Hydrolase Family Protein From Yersinia Pestis Co92 Length = 221

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           K+V VG NYA H KE G+    EPVLF+KP ++       + +P    S+HHE+ELAV+
Sbjct: 20 NKVVCVGSNYAEHIKEXGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVL 79
Query: 76 IGQKARDVPETTAMDYVGGF 95
          IG   +   E      + G+
Sbjct: 80 IGTPLKQASEDRVARAIAGY 99

>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Mycobacterium Marinum Length = 268

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 16  TKIVAVGRNYAAHAKELGN---AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVEL 72
           +K+V VG+NY  H  E+G      P +PV+FLKP ++ +G    I +P     +H E EL
Sbjct: 65  SKVVCVGKNYTDHIAEMGGQTGPTPADPVIFLKPNTAIVGPNVPIRLPANASPVHFEGEL 124
Query: 73  AVVIGQKARDVPETTAMDYVGGF 95
           A+VIG+  +DV    A+D + G+
Sbjct: 125 AIVIGRPCKDVSAAQAVDNILGY 147

>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate Hydrolase Family Protein Length = 259

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 26/97 (26%)
Query: 12  IQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL-------------------- 51
           ++A  KI+ +GRNYAAH KEL N+ PK+P  FLKPTSS +                    
Sbjct: 6   LKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNG 65
Query: 52  -----GNGGTIEVPHPLDSLHHEVELAVVIGQKARDV 83
                 N G I +P  +  +HHE+ELA+++ +   +V
Sbjct: 66  LNEDGTNPGPIFIPRGV-KVHHEIELALIVSKHLSNV 101

>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458 Length = 288

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 16  TKIVAVGRNYAAHAKEL--GNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
           +K+VA+GRNYA H  E+   +A    P LFLKP ++  G    I +P     +  E ELA
Sbjct: 81  SKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELA 140
Query: 74  VVIGQKARDVPETTAMDYVGGFIFVK 99
           VVIG+  ++V        V GF  + 
Sbjct: 141 VVIGKPCKNVKADDWKSVVLGFTIIN 166

>pdb|3R6O|A Chain A, Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From Mycobacterium Abscessus Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 17  KIVAVGRNYAAHAKELGNAVPK--EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
           +++A+G NY  H+ +  + +PK  +PV+F+K  +S  G    +  P    +L +E+E+AV
Sbjct: 105 QVIALGFNYPTHS-DTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAV 163
Query: 75  VIGQKARDVPETTAMDYVGGFIFVK 99
           VIG+    +  + A+ +V G++   
Sbjct: 164 VIGKPGYRIERSQAIKHVAGYMLAN 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	2e-46
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	4e-43
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	6e-43
1wzo_A	246	HPCE; structural genomics, riken structural genomi	1e-38
3rr6_A	265	Putative uncharacterized protein; structural genom	3e-38
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	5e-37
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	6e-32
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	2e-35
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	4e-33
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	3e-29
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	2e-18
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	2e-18
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	1e-06

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225

 Score =  147 bits (373), Expect = 2e-46
 Identities = 47/95 (49%), Positives = 64/95 (67%)

Query: 1  MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
          +  AS  + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P
Sbjct: 4  IMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMP 63

Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
              +LHHE+EL VV+G++ R VPE  AMDYVGG+
Sbjct: 64 AYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGY 98

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221

 Score =  138 bits (351), Expect = 6e-43
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
          K+V VG NYA H KE+G+    EPVLF+KP ++       + +P    S+HHE+ELAV+I
Sbjct: 21 KVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLI 80

Query: 77 GQKARDVPETTAMDYVGGF 95
          G   +   E      + G+
Sbjct: 81 GTPLKQASEDRVARAIAGY 99

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246

 Score =  128 bits (324), Expect = 1e-38
 Identities = 37/80 (46%), Positives = 51/80 (63%)

Query: 16  TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
            KI+ V  NYA HA+ELG + P+EP LF KP +S L + G +  P     +H+EVELAVV
Sbjct: 44  GKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVV 103

Query: 76  IGQKARDVPETTAMDYVGGF 95
           +G+  + V    A+DYV G+
Sbjct: 104 VGRPMKRVRAKDALDYVLGY 123

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265

 Score =  127 bits (322), Expect = 3e-38
 Identities = 37/82 (45%), Positives = 56/82 (68%)

Query: 14  AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
             +K+VA+G+NYAAHA E+G   P+ PV+F+KP +S +G G  I++P     +HHE ELA
Sbjct: 63  LASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELA 122

Query: 74  VVIGQKARDVPETTAMDYVGGF 95
           +VIG+  +DVP   A + + G+
Sbjct: 123 IVIGRPCKDVPAARAAENILGY 144

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score =  128 bits (324), Expect = 5e-37
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
            + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVI
Sbjct: 224 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 283

Query: 77  GQKARDVPETTAMDYVGGF 95
           G++AR+V E  AMDYV G+
Sbjct: 284 GKQARNVSEADAMDYVAGY 302

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score =  114 bits (288), Expect = 6e-32
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 16 TKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
            I AV  N+ +       A         PK  V F+KP ++ +G G  I  P   + + 
Sbjct: 3  GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFP-QGEKVL 61

Query: 68 HEVELAVVIGQKARDVPETTAMDYVGGF 95
              +A+++G+ A  V E  A +Y+ G+
Sbjct: 62 SGATVALIVGKTATKVREEDAAEYIAGY 89

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259

 Score =  120 bits (303), Expect = 2e-35
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 27/114 (23%)

Query: 9   QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDS--- 65
              ++A  KI+ +GRNYAAH KEL N+ PK+P  FLKPTSS +    +  V     +   
Sbjct: 3   YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 62

Query: 66  ---------------------LHHEVELAVVIGQKARDVPETT---AMDYVGGF 95
                                +HHE+ELA+++ +   +V +       D + G 
Sbjct: 63  FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGV 116

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264

 Score =  114 bits (288), Expect = 4e-33
 Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 13/93 (13%)

Query: 16  TKIVAVGRNYAAHAKELGN----AVPKEPVLFLKPTSSYLGNGGTI-------EVPHPLD 64
           TKIV VGRNY  H +E+G+     +PKEP LFLK  ++    G           VP+P  
Sbjct: 48  TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107

Query: 65  S--LHHEVELAVVIGQKARDVPETTAMDYVGGF 95
           +  LH+E ELAVV+G + R VP   A+D+V G+
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGY 140

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329

 Score =  106 bits (266), Expect = 3e-29
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 17  KIVAVGRNYAAHAK-ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
           +++A+G NY  H+  +       +PV+F+K  +S  G    +  P    +L +E+E+AVV
Sbjct: 105 QVIALGFNYPTHSDTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVV 164

Query: 76  IGQKARDVPETTAMDYVGGF 95
           IG+    +  + A+ +V G+
Sbjct: 165 IGKPGYRIERSQAIKHVAGY 184

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 17  KIVAVGRNYAAHAKELGN---------------AVPKEPVLFLKPT-SSYLGNGGTIEVP 60
           ++   G +Y    +                        P +F K T +  +G+G  I V 
Sbjct: 75  EVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVR 134

Query: 61  HPLDSLHHEVELAVVIGQKAR 81
              +    E ELAVV+    +
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK 155

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 17  KIVAVGRNYAAHAK--------ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
              A G  Y  H +        E+  +   +P+++   + S+LG    I +      +  
Sbjct: 100 FQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDM 159

Query: 69  EVELAVVIGQKARDVPETTAMDYVGGF 95
           E E AV++           A   +   
Sbjct: 160 EGEAAVIVDDVPMGATLDEAKAAIRLV 186

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 17/95 (17%)

Query: 21  VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
           VG  +      L       PV +    SS + +G  I  P                   L
Sbjct: 139 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 198

Query: 67  HHEVELAVVIGQK---ARDVPETTAMDYVGGFIFV 98
             E+E+A  +G        +P + A +++ G + +
Sbjct: 199 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLM 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
4dbf_A	288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
3rr6_A	265	Putative uncharacterized protein; structural genom	100.0
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	99.98
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	99.97
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	99.97
1wzo_A	246	HPCE; structural genomics, riken structural genomi	99.97
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	99.97
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	99.96
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	99.96
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.95
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.95
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	99.9
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	99.87
2eb4_A	267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	99.78
2wqt_A	270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	99.78

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A

Probab=100.00  E-value=2.1e-34  Score=221.51  Aligned_cols=100  Identities=32%  Similarity=0.444  Sum_probs=85.5

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHhC--CCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCC
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELG--NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR   81 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~--~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~   81 (109)
                      +++++..+++ |+||+|+|+||++|++|++  .+.|+.|++|+|+++++++++++|.+|..++++|||+|||+||||+++
T Consensus        70 ~~v~ll~Pv~-p~ki~cvG~NY~~H~~E~~~~~~~p~~P~~F~K~~~sv~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~  148 (288)
T 4dbf_A           70 KDVRLLAPML-PSKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELAVVIGKPCK  148 (288)
T ss_dssp             GGSEEECSCC-CSCEEEEESCBCC-----------CCCCEEEEECGGGEECTTCCEEECTTCCSEECCEEEEEEECSCBS
T ss_pred             ccCeEcCCCC-CceEEEEeccHHHHHHHhccCCCCCCCCEEEEeCcceeeCCCCceECCCCCCceeEEEEEEEEECCCcC
Confidence            4556666776 5999999999999999999  788999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHhhhhceeEEEeecccC
Q 033892           82 DVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        82 ~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ++++++|++||+|||++||||+|
T Consensus       149 ~v~~~~A~~~I~Gytv~nDvsaR  171 (288)
T 4dbf_A          149 NVKADDWKSVVLGFTIINDVSSR  171 (288)
T ss_dssp             SCCGGGGGGGEEEEEEEECCEEH
T ss_pred             CCCHHHHhhheeEEEEEEEeEhH
Confidence            99999999999999999999986

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A

Probab=100.00  E-value=3.3e-34  Score=218.24  Aligned_cols=100  Identities=39%  Similarity=0.661  Sum_probs=93.9

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV   83 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i   83 (109)
                      +++++..+++ |+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+.++|||+|||+||||+++++
T Consensus        54 ~~v~ll~P~~-p~ki~cvG~NY~~h~~e~g~~~P~~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v  132 (265)
T 3rr6_A           54 ADVRLLAPIL-ASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDV  132 (265)
T ss_dssp             GGSEECCSSC-CSCEEEESCCBCSSGGGTTSSCCCCCCEEEECGGGEECTTSCEECCTTCSCEEECEEEEEEECSCBSSC
T ss_pred             ccCeEcCCCC-CceEEEEEcCHHHHHHHhCCCCCCCCEEEEeCcceEeCCCCceECCCCCCceeEEEEEEEEECCcCCCC
Confidence            4456666665 599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHhhhhceeEEEeecccC
Q 033892           84 PETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        84 s~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ++++|++||+|||++||||+|
T Consensus       133 ~~~~A~~~V~Gyt~~nDvsaR  153 (265)
T 3rr6_A          133 PAARAAENILGYTIGNDVSAR  153 (265)
T ss_dssp             CGGGTGGGEEEEEEEECCEEH
T ss_pred             CHHHHHhheeEEEEEEEeEhH
Confidence            999999999999999999986

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}

Probab=99.98  E-value=2.6e-33  Score=218.72  Aligned_cols=101  Identities=28%  Similarity=0.496  Sum_probs=88.4

Q ss_pred             ccchhhhhcccCCCeEEEEccccHHHHHHhCCCCCC--CCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC
Q 033892            3 TASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPK--EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA   80 (109)
Q Consensus         3 ~~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~--~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~   80 (109)
                      ..++++..++++|+||||+|+||++|++ ++.+.|+  .|++|+|+++++++++++|.+|..+.++|||+|||+||||.+
T Consensus        91 ~~~v~llaPv~~p~kI~cvG~NY~~H~~-~g~~~P~~~~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~  169 (329)
T 3r6o_A           91 LDSVALGAPIPEPGQVIALGFNYPTHSD-TDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVVIGKPG  169 (329)
T ss_dssp             GGGSCBCCSSSSCSCEEEEESCSTTC------------CCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCB
T ss_pred             CccceEcCCCCCCCeEEEEcccHHHHHH-hCCCCCCccCCEEEEcccceEECCCCceECCCCCCCccEEEEEEEEECCCC
Confidence            4567888999999999999999999999 8888888  999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHhhhhceeEEEeecccC
Q 033892           81 RDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        81 ~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ++|++++|++||+|||++||||+|
T Consensus       170 ~~v~~e~A~~~I~Gytv~NDvSaR  193 (329)
T 3r6o_A          170 YRIERSQAIKHVAGYMLANDITAR  193 (329)
T ss_dssp             SSCCGGGGGGGEEEEEEEECCEEH
T ss_pred             CCCCHHHHHhhheEEEEEEEeEHH
Confidence            999999999999999999999986

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A

Probab=99.97  E-value=4.3e-32  Score=201.42  Aligned_cols=95  Identities=36%  Similarity=0.566  Sum_probs=90.3

Q ss_pred             hcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHh
Q 033892           10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAM   89 (109)
Q Consensus        10 ~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~   89 (109)
                      ....+++||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..++++|||+|||+||||+++++++++|+
T Consensus        14 ~~~~p~~ki~~vG~Ny~~h~~e~g~~~p~~P~~F~K~~~~~~~~g~~i~~p~~~~~~d~E~ELavvig~~~~~v~~~~A~   93 (221)
T 3s52_A           14 LLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVA   93 (221)
T ss_dssp             BCCSCCCEEEEEESCBHHHHHHTTCCCCSSCEEEEEEGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHH
T ss_pred             cccCCCCcEEEEeCCHHHHHHHhCCCCCCceEEEEcCCceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHH
Confidence            33456799999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             hhhceeEEEeecccC
Q 033892           90 DYVGGFIFVKILLLL  104 (109)
Q Consensus        90 ~~I~Gyti~ND~s~~  104 (109)
                      +||+||+++||||+|
T Consensus        94 ~~I~Gy~~~nDvs~R  108 (221)
T 3s52_A           94 RAIAGYGVALDLTLR  108 (221)
T ss_dssp             HHEEEEEEEECCEEH
T ss_pred             hhheEEEEEEEeEHH
Confidence            999999999999976

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}

Probab=99.97  E-value=1.6e-31  Score=210.59  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=92.0

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHh----CCCCCC----CCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEE
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKEL----GNAVPK----EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV   75 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~----~~~~p~----~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavV   75 (109)
                      .++++..+++++. +||+|.||++|++|+    +.+.|+    .|++|+|+++++++++++|.+|..++.+|||+|||+|
T Consensus        88 ~~v~ll~Pv~~~~-~~~~g~NY~~Ha~e~~~~~g~~~p~~~~~~P~~F~k~~ssv~g~~~~I~~P~~s~~lD~E~ELavV  166 (359)
T 3lzk_A           88 HEHDAASPLPRAF-QWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDMEGEAAVI  166 (359)
T ss_dssp             CGGGBCCSSSSCS-CEEEECCCHHHHHHHHHHTTCCCCGGGGTSCCEEEECCSSCBCTTSCEEESCTTSCEECCEEEEEE
T ss_pred             ccceEcCCCCCCC-EEEEEcCHHHHHHHHHHhcCCCCCCcccCccEEEECCCceEECCCCCEECCCCCCCeeEEEEEEEE
Confidence            3467777887765 489999999999996    566777    9999999999999999999999999999999999999


Q ss_pred             ECCCCCCCChhhHhhhhceeEEEeecccC
Q 033892           76 IGQKARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        76 IGk~~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      |||.+++|++++|++||+|||++||||+|
T Consensus       167 IGk~~~~v~~e~A~~~I~Gytl~ND~SaR  195 (359)
T 3lzk_A          167 VDDVPMGATLDEAKAAIRLVMLVNDVSLR  195 (359)
T ss_dssp             ECCBCTTCCHHHHHHTEEEEEEEECCEET
T ss_pred             ECCCCCCCCHHHHHhhhcEEEEEEeccHH
Confidence            99999999999999999999999999987

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}

Probab=99.97  E-value=8.1e-31  Score=196.77  Aligned_cols=100  Identities=38%  Similarity=0.547  Sum_probs=88.5

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV   83 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i   83 (109)
                      +++++..++ +|+||+|+|+||++|.+|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+|||+||||+++++
T Consensus        33 ~~~~~l~P~-~p~~i~~vG~ny~~h~~e~g~~~P~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v  111 (246)
T 1wzo_A           33 EDVTWLLPF-TPGKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVVGRPMKRV  111 (246)
T ss_dssp             GGSEECCSS-CCCCEEEEESCBC------CCCCCSSCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSC
T ss_pred             ccCEEcCCC-CCCeEEEEEcChHHHHHHhCCCCCCCCEEEEECcccEeCCCCeEECCCCCCceeEEEEEEEEECCCCCCC
Confidence            456677777 7899999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             ChhhHhhhhceeEEEeecccC
Q 033892           84 PETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        84 s~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ++++|++||+||+++||+|+|
T Consensus       112 ~~~~a~~~i~g~~~~nD~s~r  132 (246)
T 1wzo_A          112 RAKDALDYVLGYTIANDLVAR  132 (246)
T ss_dssp             CHHHHGGGEEEEEEEECCEEG
T ss_pred             CHHHHHhheeEEEEEEECchH
Confidence            999999999999999999987

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}

Probab=99.97  E-value=5.9e-31  Score=199.88  Aligned_cols=100  Identities=40%  Similarity=0.577  Sum_probs=84.7

Q ss_pred             cchhhhhcccCCCeEEEEccccHHHHHHhC----CCCCCCCEEEecCCCCcccCC---------CcEeecCCCCCcccce
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELG----NAVPKEPVLFLKPTSSYLGNG---------GTIEVPHPLDSLHHEV   70 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~----~~~p~~P~~f~K~~~~i~~~~---------~~i~~P~~~~~ld~E~   70 (109)
                      +++++..++ +|+||+|+|.||++|++|++    .+.|+.|++|.|+++++++++         ++|.+|..++++|||+
T Consensus        37 ~~~~ll~P~-~p~~i~~~g~Ny~~H~~e~~~~~~~~~p~~P~~f~k~~~s~~~~~~~~rp~g~~~~i~~p~~~~~~d~E~  115 (264)
T 2dfu_A           37 ASVTLLPPA-TPTKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEG  115 (264)
T ss_dssp             GGSCEECSC-CCSCEEEECSCBC-------------CCSSCCEEEECGGGEECCCBTTBHHHHSCCEEECSSCSCEECCE
T ss_pred             ccCeEcCCc-cCCeEEEEeCcHHHHHHHhcccccCCCCCCCEEEEeccceEEccCCcccccCCCcceecCCCCCceeEEE
Confidence            456666676 47999999999999999998    678899999999999999999         9999999888999999


Q ss_pred             eEEEEECCCCCCCChhhHhhhhceeEEEeecccC
Q 033892           71 ELAVVIGQKARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        71 ELavVIGk~~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      |||+||||+++++++++|++||+||+++||+|+|
T Consensus       116 ELavvig~~~~~v~~~~a~~~I~gy~~~nDvt~R  149 (264)
T 2dfu_A          116 ELAVVVGDRMRHVPPEKALDHVLGYTVAVDITAR  149 (264)
T ss_dssp             EEEEEECSCBSSCCHHHHGGGEEEEEEEECCEEH
T ss_pred             EEEEEECCCCCCCCHHHHHHHhhEeEEEEEeEhh
Confidence            9999999999999999999999999999999986

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1

Probab=99.96  E-value=2.2e-30  Score=192.35  Aligned_cols=96  Identities=47%  Similarity=0.804  Sum_probs=81.7

Q ss_pred             hhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhH
Q 033892            9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA   88 (109)
Q Consensus         9 ~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A   88 (109)
                      ...+++++||+|+|+||++|++|++.+.|+.|++|.|+++++++++++|.+|..++.+|||+|||+||||.++++++++|
T Consensus        12 ~~~~~~~~ki~~vG~ny~~h~~e~g~~~P~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a   91 (225)
T 1saw_A           12 SRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAA   91 (225)
T ss_dssp             GGHHHHCCEEEEESCCBC-----------CCCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTG
T ss_pred             hhcccCCCeEEEEEeCcHHHHHHhCCCCCCCCEEEECCcceeeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHH
Confidence            66778899999999999999999999889999999999999999999999999888899999999999999999999999


Q ss_pred             hhhhceeEEEeecccC
Q 033892           89 MDYVGGFIFVKILLLL  104 (109)
Q Consensus        89 ~~~I~Gyti~ND~s~~  104 (109)
                      ++||+||+++||||+|
T Consensus        92 ~~~i~g~~~~nDvt~r  107 (225)
T 1saw_A           92 MDYVGGYALCLDMTAR  107 (225)
T ss_dssp             GGSEEEEEEEECCEEH
T ss_pred             HHhheEEEecccccHH
Confidence            9999999999999986

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1

Probab=99.96  E-value=1.1e-29  Score=192.65  Aligned_cols=95  Identities=39%  Similarity=0.673  Sum_probs=85.8

Q ss_pred             hhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccC------------------------C-CcEeecCCC
Q 033892            9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGN------------------------G-GTIEVPHPL   63 (109)
Q Consensus         9 ~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~------------------------~-~~i~~P~~~   63 (109)
                      ..++++++||+|+|+||++|++|++.+.|+.|++|.|++++++++                        + ++|.+|...
T Consensus         3 ~~~~~~~~ki~cvG~Ny~~H~~E~g~~~p~~P~~F~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~p~~~   82 (259)
T 1nkq_A            3 YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGV   82 (259)
T ss_dssp             CGGGGGCCCEEEECSCBCSSGGGGGC----CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECTTC
T ss_pred             cccCCCCCEEEEEecCHHHHHHHhCCCCCCCCEEEeeChhhEecccccccccccccccccccccccccCCCCcEEcCCCC
Confidence            457789999999999999999999998999999999999999998                        4 999999877


Q ss_pred             CCcccceeEEEEECCCCCCCCh---hhHhhhhceeEEEeecccC
Q 033892           64 DSLHHEVELAVVIGQKARDVPE---TTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        64 ~~ld~E~ELavVIGk~~~~is~---~~A~~~I~Gyti~ND~s~~  104 (109)
                       ++|||+|||+||||+++++++   ++|++||+||+++||||+|
T Consensus        83 -~~d~E~ELavvIg~~~~~v~~~t~~ea~~~I~g~~~~nDvt~R  125 (259)
T 1nkq_A           83 -KVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTAR  125 (259)
T ss_dssp             -CEEECEEEEEEECSCBCSCCCCCGGGTGGGEEEEEEEECCEEH
T ss_pred             -cccEEEEEEEEECCCCCCCCcCCHHHHHhhhhEEEEEEeeeHH
Confidence             699999999999999999988   9999999999999999986

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.95  E-value=8.8e-29  Score=198.15  Aligned_cols=90  Identities=27%  Similarity=0.435  Sum_probs=85.7

Q ss_pred             CCeEEEEccccHHHHHHhCC--------CCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChh
Q 033892           15 GTKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (109)
Q Consensus        15 ~~ki~~vg~Ny~~h~~e~~~--------~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~   86 (109)
                      |+||+|+|+||++|++|++.        +.|+.|++|+|+++++++++++|.+|..++ +|||+|||+||||.+++++++
T Consensus         2 p~ki~cvg~Ny~~H~~e~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~-~~~E~Elavvig~~~~~v~~~   80 (429)
T 1gtt_A            2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQGEK-VLSGATVALIVGKTATKVREE   80 (429)
T ss_dssp             CSCEEEEESCBHHHHHHHTTGGGSTTTCSCCSSCEEEEECGGGEECTTCCEEECTTCC-EECCEEEEEEECSCBSSCCGG
T ss_pred             CceEEEEechHHHHHHHhhccccccccCCCCCCCEEEEcCcceEEcCCCeeecCCCCC-ccEEEEEEEEECCCCCCCCHH
Confidence            58999999999999999973        568999999999999999999999999888 999999999999999999999


Q ss_pred             hHhhhhceeEEEeecccCC
Q 033892           87 TAMDYVGGFIFVKILLLLF  105 (109)
Q Consensus        87 ~A~~~I~Gyti~ND~s~~~  105 (109)
                      +|++||+||+++||||+|-
T Consensus        81 ~a~~~i~gy~~~nD~s~Rd   99 (429)
T 1gtt_A           81 DAAEYIAGYALANDVSLPE   99 (429)
T ss_dssp             GGGGGEEEEEEEECCBSCC
T ss_pred             HHHhHhhEEEEEEEeeehh
Confidence            9999999999999999984

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.95  E-value=7.9e-29  Score=198.42  Aligned_cols=99  Identities=37%  Similarity=0.560  Sum_probs=84.8

Q ss_pred             chhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCC
Q 033892            5 SSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVP   84 (109)
Q Consensus         5 ~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is   84 (109)
                      ++++..+++  +||+|+|+||++|++|++.+.|+.|++|.|+++++++++++|.+|..+.++|||+|||+||||++++++
T Consensus       214 ~~~~~~p~~--~~i~~vG~ny~~h~~e~g~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~Elavvig~~~~~v~  291 (429)
T 1gtt_A          214 SFPTLPHPH--GTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVS  291 (429)
T ss_dssp             CCCCCSSSC--SCEEEESSCBCCC--------CCSCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCC
T ss_pred             cceecCCCC--CcEEEEEeCHHHHHHHhCCCCCCCCEEEEcCcceEeCCCCeEEcCCCCCCccEEEEEEEEECCCCCCCC
Confidence            455555555  899999999999999999988999999999999999999999999988899999999999999999999


Q ss_pred             hhhHhhhhceeEEEeecccCC
Q 033892           85 ETTAMDYVGGFIFVKILLLLF  105 (109)
Q Consensus        85 ~~~A~~~I~Gyti~ND~s~~~  105 (109)
                      +++|++||+||+++||+|+|-
T Consensus       292 ~~~a~~~i~g~~~~nD~t~Rd  312 (429)
T 1gtt_A          292 EADAMDYVAGYTVCNDYAIRD  312 (429)
T ss_dssp             TTTGGGGEEEEEEEECCEEGG
T ss_pred             HHHHHhhheEEEEEEEcccch
Confidence            999999999999999999874

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A

Probab=99.90  E-value=8.4e-25  Score=167.75  Aligned_cols=90  Identities=21%  Similarity=0.300  Sum_probs=74.6

Q ss_pred             cchhhhhcccCCCeEEEEccccHH----HHHHhC-----CC------CCCCCEEEecC-CCCcccCCCcEeecCCCCCcc
Q 033892            4 ASSAVQKLIQAGTKIVAVGRNYAA----HAKELG-----NA------VPKEPVLFLKP-TSSYLGNGGTIEVPHPLDSLH   67 (109)
Q Consensus         4 ~~~~~~~~l~~~~ki~~vg~Ny~~----h~~e~~-----~~------~p~~P~~f~K~-~~~i~~~~~~i~~P~~~~~ld   67 (109)
                      +++++..+++ ++||+|+|+||++    |++|++     .+      .|+.|.+|+|+ ++++++++++|.+|..++.+|
T Consensus        63 ~~v~ll~Pv~-p~~i~~vG~NY~~~~~~h~~e~~~~~~~~~~~~~~~~~~~P~~F~k~~~~~~~g~~~~i~~p~~~~~~d  141 (293)
T 2q18_X           63 NDIRITKPID-PPEVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTL  141 (293)
T ss_dssp             TTEEECCSSC-CSCEEEEESCBC---------CCCEETTEEHHHHHHHSSSCEEEEEECGGGEECTTSCEEECTTCSCEE
T ss_pred             ccceEeCCcC-cceEEEEEechhhhhHHHHHHhccccccccccccccCCCCCEEEECCCCCeEecCCCEEEcCCCCCCcc
Confidence            3456667776 7899999999998    888887     22      37889999996 699999999999999998999


Q ss_pred             cceeEEEEECCCCCCCChhhHhhhhceeEEEeecccC
Q 033892           68 HEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        68 ~E~ELavVIGk~~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ||+|||+||||.++          |+|||++||+|+|
T Consensus       142 ~E~ELavvIg~~~~----------i~Gyt~~nDvs~R  168 (293)
T 2q18_X          142 PEPELAVVLDSNGK----------ILGYTIMDDVSAR  168 (293)
T ss_dssp             CCEEEEEEECTTCC----------EEEEEEEEECEEH
T ss_pred             eEEEEEEEECCCCc----------CceEEEEEEeEee
Confidence            99999999999985          9999999999976

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A

Probab=99.87  E-value=7.8e-23  Score=163.89  Aligned_cols=98  Identities=21%  Similarity=0.266  Sum_probs=80.0

Q ss_pred             chhhhhcccCCCeEEEEccccHHHHHHhCC--------CCC---CCCEEEecCCCCcccCCCcEeecCC-----------
Q 033892            5 SSAVQKLIQAGTKIVAVGRNYAAHAKELGN--------AVP---KEPVLFLKPTSSYLGNGGTIEVPHP-----------   62 (109)
Q Consensus         5 ~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~--------~~p---~~P~~f~K~~~~i~~~~~~i~~P~~-----------   62 (109)
                      ++.+..+++++ + +....+|++|++|++.        ..|   +.|++|+|+++++++++++|.+|..           
T Consensus       114 ~v~ll~P~~~~-~-y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~  191 (421)
T 1hyo_A          114 SATMHLPATIG-D-YTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPV  191 (421)
T ss_dssp             TCEEECSSCCS-C-EEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCE
T ss_pred             HCeEcCCcccC-c-EEEEechHHHHHHHHhhhccccccCCCCcCCCCEEEEcccceEEcCCCeEECCCCcccCccccccc
Confidence            34555555544 2 2222447888887642        245   6899999999999999999999975           


Q ss_pred             ---CCCcccceeEEEEECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892           63 ---LDSLHHEVELAVVIGQK---ARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        63 ---~~~ld~E~ELavVIGk~---~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                         ++++|||+|||+||||.   +++|++++|++||+||+++||||+|
T Consensus       192 ~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaR  239 (421)
T 1hyo_A          192 YGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR  239 (421)
T ss_dssp             EEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEH
T ss_pred             cccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHH
Confidence               78999999999999999   8999999999999999999999986

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A

Probab=99.78  E-value=7.3e-20  Score=138.54  Aligned_cols=91  Identities=16%  Similarity=0.113  Sum_probs=79.1

Q ss_pred             hhcccCCCeEEE--EccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCC--CCCCC
Q 033892            9 QKLIQAGTKIVA--VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQK--ARDVP   84 (109)
Q Consensus         9 ~~~l~~~~ki~~--vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~--~~~is   84 (109)
                      ...+.++++|+|  +|+||++|.+|+|.+.   |.++.+..+++.+++++|.+|... +++||+|||+||||+  +++++
T Consensus        48 ~~~~~~g~~ivg~KiGl~~~~~~~~~g~~~---P~~~~l~~~~~~~~g~~i~~p~~~-~~~~E~ELa~vig~~l~~~~vt  123 (267)
T 2eb4_A           48 RLKIAEGRTLKGHKIGLTSKAMQASSQISE---PDYGALLDDMFFHDGSDIPTDRFI-VPRIEVELAFVLAKPLRGPNCT  123 (267)
T ss_dssp             HHHHHTTCCEEEEEEECHHHHHCSSCCCCS---CEEEEEEGGGEECTTEEECGGGCS-SCEEEEEEEEEESSCBCCSSCC
T ss_pred             HHHhhCCCceEEEEeccCCHHHHHHhCCCC---CcEEEEechheecCCCeecCCccC-cccEeeEEEEEECCCCCCCCCC
Confidence            345567899999  9999999999999764   555555567899999999999864 699999999999999  68999


Q ss_pred             hhhHhhhhceeEEEeeccc
Q 033892           85 ETTAMDYVGGFIFVKILLL  103 (109)
Q Consensus        85 ~~~A~~~I~Gyti~ND~s~  103 (109)
                      +++|++||+||+++||++.
T Consensus       124 ~~~a~~~v~g~~~~~ei~d  142 (267)
T 2eb4_A          124 LFDVYNATDYVIPALELID  142 (267)
T ss_dssp             HHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHhhceEEEEEEeec
Confidence            9999999999999999965

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A

Probab=99.78  E-value=2.3e-19  Score=136.04  Aligned_cols=92  Identities=22%  Similarity=0.244  Sum_probs=82.2

Q ss_pred             hhcccCCCeEEE--EccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCC--CCCCC
Q 033892            9 QKLIQAGTKIVA--VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQK--ARDVP   84 (109)
Q Consensus         9 ~~~l~~~~ki~~--vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~--~~~is   84 (109)
                      ...+.++++|+|  +|+||++|.+|+|.+.|..|.+|.|   ++.+++++|.+|.. .+++||+||++||||+  +++++
T Consensus        48 ~~~~~~g~~i~g~KiGln~~~h~~e~g~~~P~~~~lf~~---~~~~~g~~i~~p~~-~~~~~E~ELa~vig~~~~g~~vt  123 (270)
T 2wqt_A           48 QHDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFAD---MCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDIT  123 (270)
T ss_dssp             HHHHHTTCCEEEEEEECCSHHHHHTTTCSSCEEEEEEGG---GEEETTEEECGGGS-SSCEEEEEEEEEESSCBCCTTCC
T ss_pred             HHHhhCCCceEEeEecCCCHHHHHHhCCCCCCEEEEech---heeCCCCeeecCcc-CccceeeEEEEEECCCCCCCCCC
Confidence            345667899999  9999999999999988999999988   68999999999986 5799999999999999  58999


Q ss_pred             hhhHhh---hhceeEEEeecccC
Q 033892           85 ETTAMD---YVGGFIFVKILLLL  104 (109)
Q Consensus        85 ~~~A~~---~I~Gyti~ND~s~~  104 (109)
                      +++|++   ||+||+..||++.+
T Consensus       124 ~~~a~~ai~~v~~~~ei~D~~~~  146 (270)
T 2wqt_A          124 FDELYNAIEWVLPALEVVGSRIR  146 (270)
T ss_dssp             HHHHHTTEEEEEEEEEEECCSBG
T ss_pred             HHHHHHhhCeEEEEEEEEcCccc
Confidence            999998   88888999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1sawa_	217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	6e-25
d1gtta2	216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	2e-23
d1nkqa_	257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	6e-23
d1nr9a_	221	d.177.1.1 (A:) Putative isomerase YcgM {Escherichi	6e-20
d1gtta1	213	d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada	4e-13
d1hyoa2	298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	8e-12

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 6e-25
 Identities = 45/91 (49%), Positives = 61/91 (67%)

Query: 8  VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
          + +  + G  IV VGRNYA H +E+ +AV  EPVLFLKP+++Y   G  I +P    +LH
Sbjct: 3  LSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLH 62

Query: 68 HEVELAVVIGQKARDVPETTAMDYVGGFIFV 98
          HE+EL VV+G++ R VPE  AMDYVGG+   
Sbjct: 63 HELELGVVMGKRCRAVPEAAAMDYVGGYALC 93

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

 Score = 87.2 bits (215), Expect = 2e-23
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVI
Sbjct: 11 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 70

Query: 77 GQKARDVPETTAMDYVGGFIFV 98
          G++AR+V E  AMDYV G+   
Sbjct: 71 GKQARNVSEADAMDYVAGYTVC 92

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.2 bits (215), Expect = 6e-23
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 24/107 (22%)

Query: 9   QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL----- 63
              ++A  KI+ +GRNYAAH KEL N+ PK+P  FLKPTSS +    +  V         
Sbjct: 2   YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 61

Query: 64  -------------------DSLHHEVELAVVIGQKARDVPETTAMDY 91
                                +HHE+ELA+++ +   +V +    + 
Sbjct: 62  FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEV 108

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Length = 221

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

 Score = 78.3 bits (192), Expect = 6e-20
 Identities = 36/82 (43%), Positives = 49/82 (59%)

Query: 17  KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
           K+V VG NYA H KE+G+AVP+EPVLF+KP ++       + +P    S+HHEVELAV+I
Sbjct: 19  KVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLI 78

Query: 77  GQKARDVPETTAMDYVGGFIFV 98
           G   R   E      + G+   
Sbjct: 79  GATLRQATEEHVRKAIAGYGVA 100

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (146), Expect = 4e-13
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 17 KIVAVGRNYAAHAKELGNAV--------PKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
           I AV  N+ +       A         PK  V F+KP ++ +G G  I  P   + +  
Sbjct: 4  TIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLS 62

Query: 69 EVELAVVIGQKARDVPETTAMDYVGGFIFV 98
             +A+++G+ A  V E  A +Y+ G+   
Sbjct: 63 GATVALIVGKTATKVREEDAAEYIAGYALA 92

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (138), Expect = 8e-12
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 17/95 (17%)

Query: 21  VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
           VG  +      L       PV +    SS + +G  I  P                   L
Sbjct: 19  VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 78

Query: 67  HHEVELAVVIGQ---KARDVPETTAMDYVGGFIFV 98
             E+E+A  +G        +P + A +++ G + +
Sbjct: 79  DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLM 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1nr9a_	221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1sawa_	217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta2	216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1gtta1	213	4-hydroxyphenylacetate degradation bifunctional is	99.97
d1nkqa_	257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	99.97
d1hyoa2	298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	99.9
d1sv6a_	261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	96.95

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-35  Score=215.98  Aligned_cols=92  Identities=41%  Similarity=0.653  Sum_probs=79.1

Q ss_pred             cCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhh
Q 033892           13 QAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYV   92 (109)
Q Consensus        13 ~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I   92 (109)
                      .|.+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||+++++++++|++||
T Consensus        15 ~Pv~kI~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~al~g~~~~I~~p~~~~~ld~E~EL~vvigk~~~~i~~~~A~~~I   94 (221)
T d1nr9a_          15 YPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAI   94 (221)
T ss_dssp             CCCCCEEEESCCBC----------CCCCCEEEECGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHHHHE
T ss_pred             CCCccEEEEeccHHHHHHHHCCCCCCCCEEEEECchhhcCCCcccccccccceeeecccEEEEeccccceeeccccchhh
Confidence            34499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeecccC
Q 033892           93 GGFIFVKILLLL  104 (109)
Q Consensus        93 ~Gyti~ND~s~~  104 (109)
                      +|||++||||+|
T Consensus        95 ~Gyti~ND~T~R  106 (221)
T d1nr9a_          95 AGYGVALDLTLR  106 (221)
T ss_dssp             EEEEEEECCBCH
T ss_pred             heeeeeeeeeee
Confidence            999999999986

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=213.09  Aligned_cols=90  Identities=50%  Similarity=0.853  Sum_probs=77.5

Q ss_pred             CCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhhce
Q 033892           15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG   94 (109)
Q Consensus        15 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I~G   94 (109)
                      |+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+|||+||||++++|++++|++||+|
T Consensus        10 p~~I~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~s~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~G   89 (217)
T d1sawa_          10 GKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGG   89 (217)
T ss_dssp             CCEEEEESCCBC-----------CCCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEE
T ss_pred             CCcEEEEeccHHHHHHHHCCCCCCCCeEEecChhhccCCCCceeCCcccceeeeecceEEEeeeeeceeehhhHhhcccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecccC
Q 033892           95 FIFVKILLLL  104 (109)
Q Consensus        95 yti~ND~s~~  104 (109)
                      ||++||||+|
T Consensus        90 yti~nDvt~R   99 (217)
T d1sawa_          90 YALCLDMTAR   99 (217)
T ss_dssp             EEEEECCEEH
T ss_pred             ceeeeeechh
Confidence            9999999986

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-34  Score=211.52  Aligned_cols=96  Identities=38%  Similarity=0.591  Sum_probs=84.1

Q ss_pred             hcccCC-CeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhH
Q 033892           10 KLIQAG-TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA   88 (109)
Q Consensus        10 ~~l~~~-~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A   88 (109)
                      +++|.| +||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.+++++.++|
T Consensus         3 p~~p~p~~~I~cvg~Ny~~H~~E~~~~~p~~P~~F~Kp~ssl~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~i~~~~a   82 (216)
T d1gtta2           3 PTLPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADA   82 (216)
T ss_dssp             CCCSSSCSCEEEESSCBCCC--------CCSCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTG
T ss_pred             CCCCCCCCCEEEEEccHHHHHHHhCCCCCCCCEEEEEecccccCCCcccccccccceEEeeceEEEEEeccceeecHHHh
Confidence            567766 7999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhceeEEEeecccCC
Q 033892           89 MDYVGGFIFVKILLLLF  105 (109)
Q Consensus        89 ~~~I~Gyti~ND~s~~~  105 (109)
                      ++||+||+++||||+|-
T Consensus        83 ~~~I~Gy~i~nD~t~rd   99 (216)
T d1gtta2          83 MDYVAGYTVCNDYAIRD   99 (216)
T ss_dssp             GGGEEEEEEEECCEEGG
T ss_pred             hhheeeeeccccccchh
Confidence            99999999999999874

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.7e-32  Score=201.19  Aligned_cols=89  Identities=27%  Similarity=0.474  Sum_probs=83.4

Q ss_pred             CCeEEEEccccHHHHHHhCCC--------CCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChh
Q 033892           15 GTKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET   86 (109)
Q Consensus        15 ~~ki~~vg~Ny~~h~~e~~~~--------~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~   86 (109)
                      .+||||+|+||++|++|++..        +|+.|++|+|+++++++++++|.+|.. ..+|||+|||+||||.+++|+++
T Consensus         2 ~gki~~vglNY~~h~~e~~~~~~~~p~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~-~~~~~E~ELavVIgk~~~~i~~~   80 (213)
T d1gtta1           2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREE   80 (213)
T ss_dssp             CSCEEEEESCBHHHHHHHTTGGGSTTTCSCCSSCEEEEECGGGEECTTCCEEECTT-CCEECCEEEEEEECSCBSSCCGG
T ss_pred             CceEEEEeCChHHHHHHHhhhhhcCcccCCCCCCEEEEcchHHeeCCCCcEEEecc-ceeeeeeeEEEEeecccccchhh
Confidence            379999999999999999852        479999999999999999999999974 57999999999999999999999


Q ss_pred             hHhhhhceeEEEeecccC
Q 033892           87 TAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        87 ~A~~~I~Gyti~ND~s~~  104 (109)
                      +|++||+||+++||||+|
T Consensus        81 ~A~~~I~Gyti~nD~T~r   98 (213)
T d1gtta1          81 DAAEYIAGYALANDVSLP   98 (213)
T ss_dssp             GGGGGEEEEEEEECCBSC
T ss_pred             hhHHHHHHHHhhhccchH
Confidence            999999999999999986

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.7e-32  Score=202.47  Aligned_cols=94  Identities=38%  Similarity=0.620  Sum_probs=80.6

Q ss_pred             hcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCc-------------------------EeecCCCC
Q 033892           10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGT-------------------------IEVPHPLD   64 (109)
Q Consensus        10 ~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~-------------------------i~~P~~~~   64 (109)
                      .++.+++||+|+|+||++|++|++.+.|+.|++|+|++++++++++.                         +..|. +.
T Consensus         3 ~~~~~~rkI~cvG~NY~~Ha~E~g~~~p~~P~~F~Kp~ssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~p~-~~   81 (257)
T d1nkqa_           3 NYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPR-GV   81 (257)
T ss_dssp             GGGGGCCCEEEECSCBCSSGGGGGC----CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECT-TC
T ss_pred             cccCCCCcEEEEeccHHHHHHHHCCCCCCCCEEEEechhheecCCcccccccccccccccccccccccCCCceeCCC-cc
Confidence            45789999999999999999999999999999999999999987653                         44444 46


Q ss_pred             CcccceeEEEEECCCCCCCC---hhhHhhhhceeEEEeecccC
Q 033892           65 SLHHEVELAVVIGQKARDVP---ETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        65 ~ld~E~ELavVIGk~~~~is---~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ++|||+|||+||||+|++++   +++|++||+||+++||||+|
T Consensus        82 ~ld~E~EL~vVIgk~~~~i~~~~~e~A~~~V~Gy~i~nD~s~R  124 (257)
T d1nkqa_          82 KVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTAR  124 (257)
T ss_dssp             CEEECEEEEEEECSCBCSCCCCCGGGTGGGEEEEEEEECCEEH
T ss_pred             cceeeEEEEEEEeeccccccchhHHHHHHHHhhhhhccccccc
Confidence            79999999999999999987   59999999999999999986

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=9.7e-25  Score=166.55  Aligned_cols=85  Identities=24%  Similarity=0.289  Sum_probs=71.4

Q ss_pred             EEccccHHHHHHhC-------CCCC----CCCEEEecCCCCcccCCCcEeecC--------------CCCCcccceeEEE
Q 033892           20 AVGRNYAAHAKELG-------NAVP----KEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAV   74 (109)
Q Consensus        20 ~vg~Ny~~h~~e~~-------~~~p----~~P~~f~K~~~~i~~~~~~i~~P~--------------~~~~ld~E~ELav   74 (109)
                      +....|++|+++.+       .+.|    +.|++|.|+++++++++++|.+|.              .++.+|||+||++
T Consensus         7 ~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~EL~v   86 (298)
T d1hyoa2           7 TDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAF   86 (298)
T ss_dssp             EEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEE
T ss_pred             ceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeeceEEE
Confidence            34445666766543       1223    569999999999999999999994              4788999999999


Q ss_pred             EECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892           75 VIGQK---ARDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        75 VIGk~---~~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      ||||.   ||+|++++|++||+|||++||||+|
T Consensus        87 VIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaR  119 (298)
T d1hyoa2          87 FVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR  119 (298)
T ss_dssp             EECSCCCTTCCCCHHHHGGGEEEEEEEECCEEH
T ss_pred             EEecccccCccCCHHHHHHHHHHHhhhhhhhHH
Confidence            99975   8999999999999999999999986

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0011  Score=46.61  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=53.7

Q ss_pred             CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeEEEeecccC
Q 033892           38 KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFIFVKILLLL  104 (109)
Q Consensus        38 ~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyti~ND~s~~  104 (109)
                      .+|++..-..+.+..++..+.++... .+..|+||+++||++.  +..+.+++.++|.++..+.++..+
T Consensus        75 ~~p~~g~l~~~~~~~~~~~i~~~~~~-~~~iE~Eiaf~i~~~~~~~~~~~~~v~~~i~~v~~~iEi~~~  142 (261)
T d1sv6a_          75 DQPDFGTLFADMCYGDNEIIPFSRVL-QPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGS  142 (261)
T ss_dssp             SSCEEEEEEGGGEEETTEEECTTSSS-SCEEEEEEEEEESSCBCCTTCCHHHHHTTEEEEEEEEEEECC
T ss_pred             CCcccccccCceEEeecccccccccc-ccceeeEEEEEecCccccccccHHHHHHHhhhcccchhcchh
Confidence            46777666666778888888776654 5889999999999994  578999999999999999988653