Citrus Sinensis ID: 033893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHcccccEEEcccccccEEEEEEccEEEEEEEccccccHHccHHHHHccccEEEEEEEcccccHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEEEcccHHHHHHHHHHcccccEccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMlkderlvqhqptqhptseelsigkikfkafdlGGHQIARRVWKDYYAKVIGSFktkkiefrdfyeveifw
Flexible Loop (DISEMBL)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQptqhptseelsigKIKFKAFDLGGHQIARRVWKDYYAKVIGsfktkkiefrdFYEVEIFW
Low Complexity Region (SEG)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW
Disordered region (IsUnstruct)
*FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERL*************LSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIF*
Disordered Region (DISOPRED)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW
Disordered Region (DISEMBL)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV************LSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW
Disordered Region (DISPRO)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
O04267	195	GTP-binding protein SAR1B	N/A	no	0.807	0.451	1.0	1e-46
Q01474	193	GTP-binding protein SAR1B	yes	no	0.807	0.455	1.0	2e-46
O04834	193	GTP-binding protein SAR1A	no	no	0.807	0.455	0.965	1e-45
O04266	193	GTP-binding protein SAR1A	N/A	no	0.807	0.455	0.965	2e-45
P52885	198	GTP-binding protein SAR1	N/A	no	0.807	0.444	0.965	1e-44
P52884	193	GTP-binding protein SAR2	N/A	no	0.807	0.455	0.931	4e-44
Q6BVA7	190	Small COPII coat GTPase S	yes	no	0.972	0.557	0.589	6e-34
A5E5G3	190	Small COPII coat GTPase S	N/A	no	0.972	0.557	0.589	7e-34
A5DR82	190	Small COPII coat GTPase S	N/A	no	0.825	0.473	0.711	1e-33
A3LTA2	190	Small COPII coat GTPase S	yes	no	0.972	0.557	0.581	1e-33

>sp|O04267|SAR1B_BRACM GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.
Brassica campestris (taxid: 3711)

>sp|Q01474|SAR1B_ARATH GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/88 (96%), Positives = 87/88 (98%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|O04266|SAR1A_BRACM GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/88 (96%), Positives = 87/88 (98%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Brassica campestris (taxid: 3711)

>sp|P52885|SAR1_TOBAC GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/88 (96%), Positives = 87/88 (98%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFL DWFYGILA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1  MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Nicotiana tabacum (taxid: 4097)

>sp|P52884|SAR2_SOLLC GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/88 (93%), Positives = 86/88 (97%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFL DWFYG+LASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1  MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IG IKFKAFDLGGHQIARRVW+DYYAKV
Sbjct: 61 IGNIKFKAFDLGGHQIARRVWRDYYAKV 88

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.

Solanum lycopersicum (taxid: 4081)

>sp|Q6BVA7|SAR1_DEBHA Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SAR1 PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 11/117 (9%)

Query: 1   MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
           M+LFDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct: 1   MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVIG-----------SFKTKKIEFRDFYEVE 106
           IG ++F  FDLGGHQ ARR+WKDY+ +V G            F   K E    +++E
Sbjct: 61  IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIE 117

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A5E5G3|SAR1_LODEL Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=SAR1 PE=3 SV=2

 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 83/117 (70%), Gaps = 11/117 (9%)

Query: 1   MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
           M++FDWF  ILASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct: 1   MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVIG-----------SFKTKKIEFRDFYEVE 106
           IG ++F  FDLGGHQ ARR+WKDY+ +V G            F   K E    +++E
Sbjct: 61  IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIE 117

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (taxid: 379508)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A5DR82|SAR1_PICGU Small COPII coat GTPase SAR1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SAR1 PE=3 SV=3

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 76/90 (84%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          M++FDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct: 1  MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
          IG ++F  FDLGGHQ ARR+WKDY+ +V G
Sbjct: 61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNG 90

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A3LTA2|SAR1_PICST Small COPII coat GTPase SAR1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SAR1 PE=3 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 83/117 (70%), Gaps = 11/117 (9%)

Query: 1   MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
           M+LFDWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct: 1   MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query: 61  IGKIKFKAFDLGGHQIARRVWKDYYAKVIG-----------SFKTKKIEFRDFYEVE 106
           IG ++F  FDLGGHQ ARR+WKDY+ +V G            F   K E    +++E
Sbjct: 61  IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIE 117

Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
3334322	195	RecName: Full=GTP-binding protein SAR1B	0.807	0.451	1.0	6e-45
15223516	193	GTP-binding protein SAR1B [Arabidopsis t	0.807	0.455	1.0	7e-45
217075060	193	unknown [Medicago truncatula]	0.807	0.455	0.988	8e-45
356556034	193	PREDICTED: GTP-binding protein SAR1A [Gl	0.807	0.455	0.988	8e-45
357449027	193	GTP-binding protein SAR1A [Medicago trun	0.807	0.455	0.988	1e-44
225431908	193	PREDICTED: GTP-binding protein SAR1A [Vi	0.807	0.455	0.988	1e-44
297853514	210	secretion-associated ras [Arabidopsis ly	0.798	0.414	1.0	1e-44
297843710	193	hypothetical protein ARALYDRAFT_471006 [	0.807	0.455	0.988	2e-44
388492284	196	unknown [Lotus japonicus]	0.807	0.448	0.988	2e-44
224111920	193	predicted protein [Populus trichocarpa]	0.807	0.455	0.977	2e-44

>gi|3334322|sp|O04267.1|SAR1B_BRACM RecName: Full=GTP-binding protein SAR1B gi|2108347|gb|AAC49717.1| small GTP-binding protein Bsar1b [Brassica rapa subsp. campestris]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Brassica rapa subsp. campestris

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223516|ref|NP_176029.1| GTP-binding protein SAR1B [Arabidopsis thaliana] gi|266989|sp|Q01474.1|SAR1B_ARATH RecName: Full=GTP-binding protein SAR1B gi|12321751|gb|AAG50911.1|AC069159_12 GTP-binding protein (SAR1B) [Arabidopsis thaliana] gi|166734|gb|AAA32807.1| GTP-binding protein [Arabidopsis thaliana] gi|18176422|gb|AAL60041.1| putative GTP-binding protein SAR1B [Arabidopsis thaliana] gi|20465533|gb|AAM20249.1| putative GTP-binding protein SAR1B [Arabidopsis thaliana] gi|21553950|gb|AAM63031.1| GTP-binding protein SAR1B [Arabidopsis thaliana] gi|332195257|gb|AEE33378.1| GTP-binding protein SAR1B [Arabidopsis thaliana]

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075060|gb|ACJ85890.1| unknown [Medicago truncatula]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MF+FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFIFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556034|ref|XP_003546332.1| PREDICTED: GTP-binding protein SAR1A [Glycine max]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQ+ARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQVARRVWKDYYAKV 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449027|ref|XP_003594789.1| GTP-binding protein SAR1A [Medicago truncatula] gi|355483837|gb|AES65040.1| GTP-binding protein SAR1A [Medicago truncatula] gi|388509862|gb|AFK42997.1| unknown [Medicago truncatula] gi|388516193|gb|AFK46158.1| unknown [Medicago truncatula]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MF+FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFIFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431908|ref|XP_002276743.1| PREDICTED: GTP-binding protein SAR1A [Vitis vinifera]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGLLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853514|ref|XP_002894638.1| secretion-associated ras [Arabidopsis lyrata subsp. lyrata] gi|297340480|gb|EFH70897.1| secretion-associated ras [Arabidopsis lyrata subsp. lyrata]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAK 87
          IGKIKFKAFDLGGHQIARRVWKDYYAK
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAK 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843710|ref|XP_002889736.1| hypothetical protein ARALYDRAFT_471006 [Arabidopsis lyrata subsp. lyrata] gi|297335578|gb|EFH65995.1| hypothetical protein ARALYDRAFT_471006 [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 87/88 (98%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGI ASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLFDWFYGIFASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492284|gb|AFK34208.1| unknown [Lotus japonicus]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111920|ref|XP_002316023.1| predicted protein [Populus trichocarpa] gi|222865063|gb|EEF02194.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 87/88 (98%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct: 1  MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
          IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2011796	193	SAR1B "secretion-associated RA	0.807	0.455	1.0	1.5e-44
TAIR|locus:2132148	193	SAR2 "secretion-associated RAS	0.807	0.455	0.965	1.3e-43
TAIR|locus:2096104	193	AT3G62560 [Arabidopsis thalian	0.807	0.455	0.965	2.2e-43
TAIR|locus:2195306	193	SARA1A "secretion-associated R	0.807	0.455	0.954	2.8e-41
CGD|CAL0005033	190	SAR1 [Candida albicans (taxid:	0.825	0.473	0.711	2.3e-32
UNIPROTKB|Q59S78	190	SAR1 "Small COPII coat GTPase	0.825	0.473	0.711	2.3e-32
DICTYBASE|DDB_G0272296	188	sarA "GTP-binding protein Sar1	0.807	0.468	0.715	6.9e-31
SGD|S000006139	190	SAR1 "GTPase" [Saccharomyces c	0.807	0.463	0.704	3e-30
UNIPROTKB|Q5EMZ6	189	SAR1 "Small COPII coat GTPase	0.825	0.476	0.666	4.9e-30
POMBASE|SPBC31F10.06c	190	sar1 "ADP-ribosylation factor	0.825	0.473	0.677	6.2e-30

TAIR|locus:2011796 SAR1B "secretion-associated RAS 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
             IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0019898 "extrinsic to membrane" evidence=IDA

TAIR|locus:2132148 SAR2 "secretion-associated RAS super family 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 85/88 (96%), Positives = 87/88 (98%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct:     1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
             IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2096104 AT3G62560 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 85/88 (96%), Positives = 87/88 (98%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             MFL DWFYG+LA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct:     1 MFLVDWFYGVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
             IGKIKFKAFDLGGHQIARRVWKDYYAKV
Sbjct:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2195306 SARA1A "secretion-associated RAS super family 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 84/88 (95%), Positives = 85/88 (96%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             MFLFDWFYGILASLGL +KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS
Sbjct:     1 MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
             IGKI FKAFDLGGHQIARRVWKD YAKV
Sbjct:    61 IGKINFKAFDLGGHQIARRVWKDCYAKV 88

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

CGD|CAL0005033 SAR1 [Candida albicans (taxid:5476)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 64/90 (71%), Positives = 76/90 (84%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             M++FDWF  IL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct:     1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
             IG ++F  FDLGGHQ ARR+WKDY+ +V G
Sbjct:    61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNG 90

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003400 "regulation of COPII vesicle coating" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

UNIPROTKB|Q59S78 SAR1 "Small COPII coat GTPase SAR1" [Candida albicans SC5314 (taxid:237561)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 64/90 (71%), Positives = 76/90 (84%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             M++FDWF  IL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct:     1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
             IG ++F  FDLGGHQ ARR+WKDY+ +V G
Sbjct:    61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNG 90

GO:0003924 "GTPase activity" evidence=IGI

GO:0005525 "GTP binding" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI

DICTYBASE|DDB_G0272296 sarA "GTP-binding protein Sar1A" [Dictyostelium discoideum (taxid:44689)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             MFLFDWF+ +L+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT HPTSEEL+
Sbjct:     1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
             +G I+FKAFDLGGH+ ARR+WKDYY  V
Sbjct:    61 MGNIRFKAFDLGGHESARRLWKDYYPSV 88

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000006139 SAR1 "GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 62/88 (70%), Positives = 71/88 (80%)

Query:     3 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62
             +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG
Sbjct:     6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65

Query:    63 KIKFKAFDLGGHQIARRVWKDYYAKVIG 90
              IKF  FDLGGH  ARR+WKDY+ +V G
Sbjct:    66 NIKFTTFDLGGHIQARRLWKDYFPEVNG 93

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003400 "regulation of COPII vesicle coating" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

GO:0030127 "COPII vesicle coat" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|Q5EMZ6 SAR1 "Small COPII coat GTPase SAR1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 60/90 (66%), Positives = 75/90 (83%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             M++ +WFY +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+
Sbjct:     1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
             IG ++F  FDLGGHQ ARR+WKDY+ +V G
Sbjct:    61 IGNVRFTTFDLGGHQQARRLWKDYFPEVNG 90

GO:0043581 "mycelium development" evidence=IEP

POMBASE|SPBC31F10.06c sar1 "ADP-ribosylation factor Sar1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/90 (67%), Positives = 73/90 (81%)

Query:     1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
             MF+ +WFY  LA LGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+
Sbjct:     1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELA 60

Query:    61 IGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
             IG ++F  FDLGGHQ ARR+W+DY+ +V G
Sbjct:    61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNG 90

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISM

GO:0005525 "GTP binding" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0006998 "nuclear envelope organization" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=ISM

GO:0030127 "COPII vesicle coat" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04267	SAR1B_BRACM	No assigned EC number	1.0	0.8073	0.4512	N/A	no
O04266	SAR1A_BRACM	No assigned EC number	0.9659	0.8073	0.4559	N/A	no
Q6CWR7	SAR1_KLULA	3, ., 6, ., 5, ., -	0.7159	0.8073	0.4631	yes	no
Q01474	SAR1B_ARATH	No assigned EC number	1.0	0.8073	0.4559	yes	no
Q755D7	SAR1_ASHGO	3, ., 6, ., 5, ., -	0.7159	0.8073	0.4631	yes	no
P52885	SAR1_TOBAC	No assigned EC number	0.9659	0.8073	0.4444	N/A	no
P52884	SAR2_SOLLC	No assigned EC number	0.9318	0.8073	0.4559	N/A	no
Q559R0	SAR1A_DICDI	No assigned EC number	0.7159	0.8073	0.4680	yes	no
P20606	SAR1_YEAST	3, ., 6, ., 5, ., -	0.7045	0.8073	0.4631	yes	no
Q6FUZ9	SAR1_CANGA	3, ., 6, ., 5, ., -	0.7045	0.8073	0.4656	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-59
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	3e-57
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-42
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-20
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	8e-16
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-15
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	3e-13
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-12
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-11
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	6e-11
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	1e-10
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-10
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	8e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-09
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-09
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	2e-09
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-08
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-08
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-08
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	4e-08
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	0.001
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	0.004

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  180 bits (459), Expect = 1e-59
 Identities = 67/89 (75%), Positives = 79/89 (88%)

Query: 2  FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61
          F+FDWFY +L+SLGL++KEAKI+FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I
Sbjct: 1  FIFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTI 60

Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
          G +KF  FDLGGH+ ARRVWKDY+ +V G
Sbjct: 61 GNVKFTTFDLGGHEQARRVWKDYFPEVDG 89

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  174 bits (442), Expect = 3e-57
 Identities = 71/87 (81%), Positives = 77/87 (88%)

Query: 4  FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63
          FDWFY ILASLGLW K AKILFLGLDNAGKTTLLHMLK++RL QHQPTQHPTSEEL+IG 
Sbjct: 1  FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGN 60

Query: 64 IKFKAFDLGGHQIARRVWKDYYAKVIG 90
          IKF  FDLGGHQ ARR+WKDY+ +V G
Sbjct: 61 IKFTTFDLGGHQQARRLWKDYFPEVNG 87

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  136 bits (346), Expect = 1e-42
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query: 7  FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66
          F  ILA L  W KE +IL LGLDNAGKTT+L+ LK   +V   PT     E ++   +KF
Sbjct: 1  FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60

Query: 67 KAFDLGGHQIARRVWKDYYAKV 88
            +D+GG +  R +W++Y+   
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNT 82

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 78.8 bits (195), Expect = 6e-20
 Identities = 28/67 (41%), Positives = 37/67 (55%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL LGLD AGKTT+L+ LK   +V   PT     E +    +KF  +D+GG    R +W
Sbjct: 1  RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 82 KDYYAKV 88
          K YY   
Sbjct: 61 KHYYENT 67

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 68.6 bits (168), Expect = 8e-16
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E +IL LGLDNAGKTT+L  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 14 QEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIR 73

Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
            W++Y+        VI S   K+ E
Sbjct: 74 PYWRNYFENTDVLIYVIDSADRKRFE 99

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 67.0 bits (164), Expect = 3e-15
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 15 GLW-----QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69
           LW     +KE K++ +GLDNAGKTT+L+      +V   PT     EE+    I+F  +
Sbjct: 5  SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMW 64

Query: 70 DLGGHQIARRVWKDYYA 86
          D+GG +  R  W  YY 
Sbjct: 65 DIGGQESLRSSWNTYYT 81

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R  W
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 82 KDYYAK------VIGSFKTKKI 97
          + YY+       V+ S    ++
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRL 82

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R
Sbjct: 8  KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 67

Query: 79 RVWKDYY 85
           +W+ YY
Sbjct: 68 PLWRHYY 74

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 6  WFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65
          W      SL   +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    +K
Sbjct: 4  WLSSAFKSL-FGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLK 62

Query: 66 FKAFDLGGHQIARRVWKDYYAKVIG 90
          F  +D+GG    R +W+ YY    G
Sbjct: 63 FTMWDVGGQDKLRPLWRHYYQNTNG 87

Length = 182

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 56.5 bits (136), Expect = 5e-11
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----HPTSEELSIGKIKFKAFD 70
          L+ KE KI+ LG    GKTTLL+ L  +   +  P          + E     IK + +D
Sbjct: 1  LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 71 LGGHQIARRVWKDYYAKVIG 90
            G +  R +  +YY    G
Sbjct: 61 TAGQEEYRSLRPEYYRGANG 80

Length = 219

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 29/73 (39%), Positives = 39/73 (53%)

Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL +GLD AGKTT+L+ LK    V   PT     E ++   I F  +D+GG    
Sbjct: 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKI 70

Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 71 RPLWRHYYTNTQG 83

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 23 ILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80
          IL LGLDN+GKTT+++ LK          PT     E    G + F AFD+ G    R +
Sbjct: 2  ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 81 WKDYYAKVIG 90
          W+ YY  + G
Sbjct: 62 WEHYYKNIQG 71

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query: 7  FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66
             IL      ++E +IL LGLDNAGKTT+L     E +    PT     + L     K 
Sbjct: 1  LLTILRKTKQKEREMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKL 60

Query: 67 KAFDLGGHQIARRVWKDYY 85
            +D+GG +  R  W++Y+
Sbjct: 61 NIWDVGGQKSLRSYWRNYF 79

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 53.0 bits (127), Expect = 8e-10
 Identities = 28/73 (38%), Positives = 40/73 (54%)

Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74

Query: 78 RRVWKDYYAKVIG 90
          R +W+ Y+    G
Sbjct: 75 RPLWRHYFQNTQG 87

Length = 181

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-GKIKFKAFDLGGHQIARRV 80
          ++L LGLD+AGK+TLL+ LK   LV   PT     E L +   +    +D+GG +  R V
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 81 WKDY 84
          WK Y
Sbjct: 61 WKCY 64

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +++ LGLD AGKTT+L  LK +  +Q  PT     E +    +KF  +D+GG    R +W
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 82 KDYY 85
          K YY
Sbjct: 61 KHYY 64

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 40/68 (58%)

Query: 23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK 82
          +L +GLDNAGKTTL+  L+ E   +  PT   T  +L + K +   FDLGG    R +W 
Sbjct: 2  LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 83 DYYAKVIG 90
          +YYA+  G
Sbjct: 62 NYYAEAHG 69

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 23 ILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQHPTSEELSIGKI-----KFKAFDLGGH 74
          +L LGLDNAGKTT L   K +    ++   P++   +  L+IG I     +   +DLGG 
Sbjct: 2  VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61

Query: 75 QIARRVWKDYYAKVIG 90
          +  R +W  YYA+  G
Sbjct: 62 EELRSLWDKYYAESHG 77

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 82 KDYY 85
          + Y+
Sbjct: 62 RHYF 65

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQH----QPTQH--PTSEELSIGKIKFKAFDLGG 73
          E KI+ +G  N GK+TLL+ L   ++         T++   T  E      KF   D  G
Sbjct: 1  EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 74 HQIARRVWKDYYAKVIGS 91
           +    + + YY  V  S
Sbjct: 61 QEDYDAIRRLYYRAVESS 78

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE--ELSIGK---IKFKAFDLGGHQIA 77
          I+ LGLD+AGKTT+L+ LK    V   PT+   +E  ++S+G    + F  +D+GG +  
Sbjct: 6  IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65

Query: 78 RRVWKDY 84
          R +WK Y
Sbjct: 66 RPLWKSY 72

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 23 ILFLGLDNAGKTTLLHMLKDER-LVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          IL LGLD AGKT+LLH L  ER L    PT    S  +       +  ++GG Q  R+ W
Sbjct: 2  ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61

Query: 82 KDYYAKVIG 90
          K Y +   G
Sbjct: 62 KRYLSGSQG 70

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH--------PTSEELSIGKIKFKAFDL 71
          EAK++ +G    GKT+L   L  E+    + + H          + E    KI+   +D 
Sbjct: 1  EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERK--KIRLNVWDF 58

Query: 72 GGHQI 76
          GG +I
Sbjct: 59 GGQEI 63

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ--------HPTSEELSIGKIKFKA-- 68
            E KI+ +G   AGKTT +  L D+ LV  +            PT+  +  G I+     
Sbjct: 9   IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT 68

Query: 69  ----FDLGGHQIARRVWKDYYAKVIGSF----KTKKIEFRDFYEVEIF 108
               F   G +  + +W+      +G+      ++ I F     ++  
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFL 116

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.86
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.83
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.83
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.82
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.81
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.8
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.78
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.78
PTZ00133	182	ADP-ribosylation factor; Provisional	99.76
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.76
PLN00223	181	ADP-ribosylation factor; Provisional	99.76
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.73
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.73
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.73
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.72
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.72
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.71
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.7
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.7
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.7
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.69
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.67
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.66
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.66
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.66
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.66
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.65
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.65
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.64
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.64
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.64
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.63
PLN00023	334	GTP-binding protein; Provisional	99.63
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.63
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.62
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.62
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.62
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.62
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.62
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.62
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.62
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.62
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.62
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.62
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.61
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.61
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.61
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.61
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.61
PTZ00369	189	Ras-like protein; Provisional	99.6
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.6
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.6
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.6
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.6
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.59
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.59
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.59
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.59
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.58
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.58
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.58
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.58
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.57
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.57
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.57
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.57
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.57
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.57
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.57
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.56
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.56
PLN03108	210	Rab family protein; Provisional	99.56
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.56
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.56
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.56
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.55
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.55
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.55
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.55
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.55
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.54
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.54
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.54
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.54
PLN03110	216	Rab GTPase; Provisional	99.53
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.53
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.53
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.53
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.53
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.53
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.53
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.53
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.52
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.51
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.51
PLN03118	211	Rab family protein; Provisional	99.51
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.51
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.51
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.51
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.51
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.51
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.51
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.5
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.5
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.5
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.5
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.5
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.49
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.49
COG1100	219	GTPase SAR1 and related small G proteins [General	99.48
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.48
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.47
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.47
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.47
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.46
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.46
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.45
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.45
KOG0394	210	consensus Ras-related GTPase [General function pre	99.44
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.44
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.43
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.42
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.41
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.41
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.4
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.4
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.4
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.39
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.39
COG4559	259	ABC-type hemin transport system, ATPase component	99.38
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.38
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.38
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.37
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.37
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.36
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.35
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.34
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.34
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.34
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.34
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.34
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.33
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.33
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.33
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.32
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.32
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.32
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.31
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.31
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.31
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.31
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.31
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.31
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.31
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.31
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.3
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.3
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.29
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.29
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.29
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.29
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.29
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.29
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.29
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.29
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.28
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.28
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.28
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.28
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.28
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.28
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.28
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.28
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.28
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.28
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.28
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.28
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.27
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.27
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.27
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.27
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.27
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.27
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.27
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.27
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.27
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.27
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.27
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.26
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.26
PRK10908	222	cell division protein FtsE; Provisional	99.26
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.26
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.26
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.26
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.26
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.26
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.26
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.25
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.25
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.25
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.25
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.25
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.25
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.25
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.24
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.24
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.24
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.24
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.24
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.24
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.24
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.24
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.24
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.24
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.24
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.24
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.24
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.23
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.23
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.23
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.23
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.23
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.23
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.23
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.23
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.23
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.23
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.23
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.23
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.23
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.23
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.23
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.23
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.22
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.22
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.22
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.22
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.22
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.22
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.22
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.22
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.22
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.22
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.22
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.22
PRK04213	201	GTP-binding protein; Provisional	99.22
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.22
COG1123	539	ATPase components of various ABC-type transport sy	99.21
cd03246	173	ABCC_Protease_Secretion This family represents the	99.21
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.21
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.21
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.21
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.21
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.21
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.21
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.21
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.21
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.21
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.21
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.21
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.21
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.2
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.2
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.2
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.2
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.2
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.2
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.2
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.2
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.2
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.2
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.19
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.19
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.19
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.19
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.19
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.19
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.19
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.19
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.19
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.18
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.18
COG4181	228	Predicted ABC-type transport system involved in ly	99.18
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.18
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.18
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.18
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.18
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.18
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.18
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.18
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.17
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.17
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.17
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.17
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.17
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.17
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.17
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.17
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.17
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.17
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.17
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.17
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.16
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.16
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.16
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.16
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.16
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.16
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.16
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.15
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.15
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.15
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.15
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.15
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.15
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.15
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.15
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.15
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.15
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.15
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.15
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.14
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.14
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.14
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.14
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.14
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.14
cd00881	189	GTP_translation_factor GTP translation factor fami	99.14
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.14
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.14
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.14
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.13
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.13
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.13
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.13
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.13
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.13
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.13
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.13
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.13
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.13
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.13
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.13
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.13
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.12
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.12
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.12
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.12
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.12
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.12
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.12
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.12
PRK15494	339	era GTPase Era; Provisional	99.11
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.11
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.11
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.11
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.11
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.11
PRK10938	490	putative molybdenum transport ATP-binding protein	99.11
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.11
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.11
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.1
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.1
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.1
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.1
PRK12299	335	obgE GTPase CgtA; Reviewed	99.1
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.1
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.1
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.1
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.1
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.09
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.09
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.09
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.09
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.09
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.09
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.09
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.09
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.09
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.08
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.08
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.08
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.08
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.08
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.08
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.08
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.08
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.07
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.07
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.07
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.07
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.07
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.07
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.07
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.07
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.06
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.06
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.06
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.06
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.05
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.05
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.05
PRK03003	472	GTP-binding protein Der; Reviewed	99.05
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.05
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.04
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.04
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.04
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.04
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.04
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.04
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.04
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.03
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.03
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.03
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.03
PRK11147	635	ABC transporter ATPase component; Reviewed	99.03
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.03
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.03
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.03
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.02
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.02
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.02
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.02
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.02
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.01
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.01
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.01
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.01
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.01
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.01
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.0
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.99
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.99
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.99
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.99
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.99
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.99
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.99
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.99
PLN03211	659	ABC transporter G-25; Provisional	98.99
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.99
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.98
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.98
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.98
PRK10938	490	putative molybdenum transport ATP-binding protein	98.98
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.98
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.97
COG4987	573	CydC ABC-type transport system involved in cytochr	98.97
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.97
COG4988	559	CydD ABC-type transport system involved in cytochr	98.96
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.95
COG2229	187	Predicted GTPase [General function prediction only	98.95
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.94
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.93
PRK00093	435	GTP-binding protein Der; Reviewed	98.93
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.93
PRK11147	635	ABC transporter ATPase component; Reviewed	98.93
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.92
PLN03140	1470	ABC transporter G family member; Provisional	98.9
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.9
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.9
PLN03232	1495	ABC transporter C family member; Provisional	98.89
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.89
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.88
PLN03073	718	ABC transporter F family; Provisional	98.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.88
COG0488	530	Uup ATPase components of ABC transporters with dup	98.88
PLN03130	1622	ABC transporter C family member; Provisional	98.88
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.88
PTZ00243	1560	ABC transporter; Provisional	98.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.87

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.1e-22  Score=133.99  Aligned_cols=90  Identities=34%  Similarity=0.514  Sum_probs=84.3

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +..++.+|+++|++||||||+++.+...++.++.||++++.+++.+.+..+..||++||+++|.+|++||.+.+++|.+.
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv   92 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV   92 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence            67788899999999999999999999888888899999999999999999999999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      |-+.+.+++.
T Consensus        93 DS~Dr~Ri~e  102 (181)
T KOG0070|consen   93 DSSDRERIEE  102 (181)
T ss_pred             eCCcHHHHHH
Confidence            9888776654

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.84  E-value=1.4e-20  Score=125.22  Aligned_cols=97  Identities=30%  Similarity=0.428  Sum_probs=87.6

Q ss_pred             HHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893            7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA   86 (109)
Q Consensus         7 ~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~   86 (109)
                      +..+|+......++.+|.|+|++||||||+++.+.+...+...||.+|..-++.+.++.+.+||++||...|..|++||.
T Consensus         3 ~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfe   82 (185)
T KOG0073|consen    3 LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFE   82 (185)
T ss_pred             HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhh
Confidence            34577777777778899999999999999999999988788999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEEeCCCcccc
Q 033893           87 KVIGSFKTKKIEFRDFY  103 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~~~  103 (109)
                      .++++|.+.|.+.+.++
T Consensus        83 stdglIwvvDssD~~r~   99 (185)
T KOG0073|consen   83 STDGLIWVVDSSDRMRM   99 (185)
T ss_pred             ccCeEEEEEECchHHHH
Confidence            99999999998665443

>cd00879 Sar1 Sar1 subfamily

Probab=99.83  E-value=3.2e-20  Score=125.62  Aligned_cols=101  Identities=67%  Similarity=1.124  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHH
Q 033893            3 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (109)
Q Consensus         3 ~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~   82 (109)
                      |+++++++|+.+++..++.+++++|++|||||||++++.+.++..+.||.++..+++.+++..+.+||++|++..+..|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~   81 (190)
T cd00879           2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK   81 (190)
T ss_pred             hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence            57899999999999999999999999999999999999988877788999998999999999999999999999999999


Q ss_pred             hhhhcCCEEEEEEeCCCcccc
Q 033893           83 DYYAKVIGSFKTKKIEFRDFY  103 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~~~~~~  103 (109)
                      .|++++++++.+++.+...++
T Consensus        82 ~~~~~ad~iilV~D~~~~~s~  102 (190)
T cd00879          82 DYFPEVDGIVFLVDAADPERF  102 (190)
T ss_pred             HHhccCCEEEEEEECCcHHHH
Confidence            999999999999998755433

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2e-20  Score=122.11  Aligned_cols=100  Identities=34%  Similarity=0.529  Sum_probs=89.9

Q ss_pred             HHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhh
Q 033893            5 DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY   84 (109)
Q Consensus         5 ~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~   84 (109)
                      +.+..++..+ |..++-+++++|+++|||||+|..+.-++....+||++|+.+++.+.+..++.||++|++++|.+|++|
T Consensus         3 n~~sk~~~k~-f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhY   81 (180)
T KOG0071|consen    3 NYMSKLLSKI-FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHY   81 (180)
T ss_pred             chHHHHHHHH-hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhh
Confidence            3455667777 777888999999999999999999998888899999999999999999999999999999999999999


Q ss_pred             hhcCCEEEEEEeCCCcccccc
Q 033893           85 YAKVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~~  105 (109)
                      |....+++.+.|-..+++.+.
T Consensus        82 y~gtqglIFV~Dsa~~dr~ee  102 (180)
T KOG0071|consen   82 YTGTQGLIFVVDSADRDRIEE  102 (180)
T ss_pred             ccCCceEEEEEeccchhhHHH
Confidence            999999999998777666554

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2e-20  Score=124.83  Aligned_cols=101  Identities=61%  Similarity=0.987  Sum_probs=95.0

Q ss_pred             CchHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893            1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV   80 (109)
Q Consensus         1 ~~~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~   80 (109)
                      |++|+|++.+|..+.+..+.++++.+|+++||||||+++|+..+...++||.+|+++++.++|..+..+|++|....|..
T Consensus         1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~   80 (193)
T KOG0077|consen    1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV   80 (193)
T ss_pred             CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence            67899999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             HHhhhhcCCEEEEEEeCCCcc
Q 033893           81 WKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      |++|+..++++|...+.-...
T Consensus        81 wkdyf~~v~~iv~lvda~d~e  101 (193)
T KOG0077|consen   81 WKDYFPQVDAIVYLVDAYDQE  101 (193)
T ss_pred             HHHHHhhhceeEeeeehhhHH
Confidence            999999999999877764443

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.81  E-value=2.4e-19  Score=121.10  Aligned_cols=95  Identities=34%  Similarity=0.486  Sum_probs=85.7

Q ss_pred             HHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            8 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         8 ~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      ..+|+.+....++.+|+++|++||||||+++.+...++.+..||.++...++.+++..+.+||++|+..+|.+|+.||.+
T Consensus         2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~   81 (175)
T PF00025_consen    2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN   81 (175)
T ss_dssp             HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred             HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence            46677886557788899999999999999999998878789999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCccc
Q 033893           88 VIGSFKTKKIEFRDF  102 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~  102 (109)
                      +++++.+.|.+....
T Consensus        82 ~~~iIfVvDssd~~~   96 (175)
T PF00025_consen   82 ADGIIFVVDSSDPER   96 (175)
T ss_dssp             ESEEEEEEETTGGGG
T ss_pred             cceeEEEEeccccee
Confidence            999999999775543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.80  E-value=4.6e-19  Score=120.23  Aligned_cols=100  Identities=71%  Similarity=1.178  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHh
Q 033893            4 FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKD   83 (109)
Q Consensus         4 ~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~   83 (109)
                      |+|+.+++.-.+.+.++.+|+++|++|||||||++.+.+..+....||.++..+++.+++..+.+||++|+++.+..|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~   80 (184)
T smart00178        1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKD   80 (184)
T ss_pred             ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence            47888887744445778899999999999999999999887777788888888999999999999999999999999999


Q ss_pred             hhhcCCEEEEEEeCCCcccc
Q 033893           84 YYAKVIGSFKTKKIEFRDFY  103 (109)
Q Consensus        84 ~~~~~~~~v~~~~~~~~~~~  103 (109)
                      |+.++++++.+.|.+...++
T Consensus        81 ~~~~ad~ii~vvD~~~~~~~  100 (184)
T smart00178       81 YFPEVNGIVYLVDAYDKERF  100 (184)
T ss_pred             HhCCCCEEEEEEECCcHHHH
Confidence            99999999999998765544

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.1e-19  Score=121.29  Aligned_cols=91  Identities=21%  Similarity=0.376  Sum_probs=82.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccc-cCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ...+++|+|.+|+|||||+.++...+|++ ..||++  |-.-++.+++  +++.+||++||++++.+.++||++++++++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            45689999999999999999999888866 589998  5567888887  677799999999999999999999999999


Q ss_pred             EEeCCCccccccccCC
Q 033893           94 TKKIEFRDFYEVEIFW  109 (109)
Q Consensus        94 ~~~~~~~~~~~~~~~w  109 (109)
                      +||++..+++..++.|
T Consensus        84 vYDit~~~SF~~aK~W   99 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNW   99 (200)
T ss_pred             EEecccHHHHHHHHHH
Confidence            9999999999988877

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.7e-19  Score=120.81  Aligned_cols=89  Identities=24%  Similarity=0.351  Sum_probs=79.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+|+|.+|+|||.|+..+++..+ ++++.|++.+  ..++.++|  ..+++||++||+|+|++..+||++++++|++|
T Consensus        10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vy   89 (205)
T KOG0084|consen   10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVY   89 (205)
T ss_pred             EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEE
Confidence            4789999999999999999999887 5788888854  56778887  57789999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |+|...+|.....|
T Consensus        90 DiT~~~SF~~v~~W  103 (205)
T KOG0084|consen   90 DITKQESFNNVKRW  103 (205)
T ss_pred             EcccHHHhhhHHHH
Confidence            99999999887766

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.76  E-value=6e-18  Score=114.76  Aligned_cols=90  Identities=33%  Similarity=0.500  Sum_probs=78.7

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +..++.+|+++|++|+|||||++.+...++..+.||.+++...+..++..+.+||++|+++++.+|+.|++++++++.++
T Consensus        13 ~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~   92 (182)
T PTZ00133         13 FGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV   92 (182)
T ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            45566789999999999999999998777767789988877778888899999999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      |.+...+++.
T Consensus        93 D~t~~~s~~~  102 (182)
T PTZ00133         93 DSNDRERIGD  102 (182)
T ss_pred             eCCCHHHHHH
Confidence            9877655543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.76  E-value=8.3e-18  Score=110.10  Aligned_cols=97  Identities=32%  Similarity=0.493  Sum_probs=84.4

Q ss_pred             HHHHHhc-CCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEEEcCCcccccccHHhhh
Q 033893            8 YGILASL-GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFDLGGHQIARRVWKDYY   85 (109)
Q Consensus         8 ~~~l~~v-~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~d~~g~~~~r~~~~~~~   85 (109)
                      ..+|... +-+.++.+++++|+.+|||||+|+.|++....+..||.+|+.-++.+++ ..++.||++|+..+|..|.+||
T Consensus         4 ~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYy   83 (185)
T KOG0074|consen    4 ETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYY   83 (185)
T ss_pred             HHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhh
Confidence            3444443 3446777899999999999999999999888889999999999999988 8999999999999999999999


Q ss_pred             hcCCEEEEEEeCCCccccc
Q 033893           86 AKVIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~  104 (109)
                      .++|+++.+.|-+...+++
T Consensus        84 envd~lIyVIDS~D~krfe  102 (185)
T KOG0074|consen   84 ENVDGLIYVIDSTDEKRFE  102 (185)
T ss_pred             hccceEEEEEeCCchHhHH
Confidence            9999999999976666555

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.76  E-value=6.7e-18  Score=114.50  Aligned_cols=89  Identities=34%  Similarity=0.512  Sum_probs=78.7

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +..++.+|+++|++|||||||++.+...++.+..||.+++...+..++..+.+||++|+++++.+|+.||+++++++.++
T Consensus        13 ~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~   92 (181)
T PLN00223         13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            44556789999999999999999998777777789988888788888999999999999999999999999999999999


Q ss_pred             eCCCccccc
Q 033893           96 KIEFRDFYE  104 (109)
Q Consensus        96 ~~~~~~~~~  104 (109)
                      |.+...+++
T Consensus        93 D~s~~~s~~  101 (181)
T PLN00223         93 DSNDRDRVV  101 (181)
T ss_pred             eCCcHHHHH
Confidence            998766554

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.73  E-value=2.5e-17  Score=110.82  Aligned_cols=88  Identities=35%  Similarity=0.532  Sum_probs=77.5

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .++.+|+++|++|+|||||++.+....+.++.||.+.+..++..++..+.+||++|+++++.+|+.|++++++++.++|.
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~   90 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS   90 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence            34678999999999999999999766676778998888778888889999999999999999999999999999999999


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        91 t~~~s~~~   98 (175)
T smart00177       91 NDRDRIDE   98 (175)
T ss_pred             CCHHHHHH
Confidence            87766554

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.73  E-value=3.1e-18  Score=112.62  Aligned_cols=102  Identities=24%  Similarity=0.383  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893            2 FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV   80 (109)
Q Consensus         2 ~~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~   80 (109)
                      ++++....++.++ |...+-++.++|+..|||||+.+.+...++ +..+||.++..-+++-++..+.+||++||+++|.+
T Consensus         3 ~~~~k~L~wi~~~-f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm   81 (186)
T KOG0075|consen    3 AKLRKKLVWICNS-FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM   81 (186)
T ss_pred             hHHHHHHHHHHHH-HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence            4566667777776 777888999999999999999999987665 78999999999999999999999999999999999


Q ss_pred             HHhhhhcCCEEEEEEeCCCccccc
Q 033893           81 WKDYYAKVIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~~  104 (109)
                      |+.||+.+++++.+.|-+..+..+
T Consensus        82 WerycR~v~aivY~VDaad~~k~~  105 (186)
T KOG0075|consen   82 WERYCRGVSAIVYVVDAADPDKLE  105 (186)
T ss_pred             HHHHhhcCcEEEEEeecCCcccch
Confidence            999999999999998876655444

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.73  E-value=1.4e-17  Score=111.04  Aligned_cols=89  Identities=22%  Similarity=0.363  Sum_probs=77.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCc-cc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPT-QH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt-~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+|+|++|+|||+|+..+....|.+..|+ ++  |..-.+.++|  .++.+||.+||+++|++.+.||+.+.+++.+|
T Consensus        12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVY   91 (209)
T KOG0080|consen   12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVY   91 (209)
T ss_pred             EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEE
Confidence            5789999999999999999998888776665 55  4456677777  57779999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |++.++++.+.+-|
T Consensus        92 DVT~Rdtf~kLd~W  105 (209)
T KOG0080|consen   92 DVTSRDTFVKLDIW  105 (209)
T ss_pred             EccchhhHHhHHHH
Confidence            99999988876545

>cd04154 Arl2 Arl2 subfamily

Probab=99.72  E-value=2.7e-17  Score=110.05  Aligned_cols=96  Identities=30%  Similarity=0.432  Sum_probs=83.7

Q ss_pred             HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893            9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV   88 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~   88 (109)
                      .+++..+...++.+|+++|++|||||||++++.+..+....||.++....+.+++..+.+||++|++.++..|..|++++
T Consensus         3 ~~~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~   82 (173)
T cd04154           3 TIIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFEST   82 (173)
T ss_pred             hhhhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence            45667777777789999999999999999999988777778888887788888999999999999999999999999999


Q ss_pred             CEEEEEEeCCCccccc
Q 033893           89 IGSFKTKKIEFRDFYE  104 (109)
Q Consensus        89 ~~~v~~~~~~~~~~~~  104 (109)
                      ++++.+++.+...+++
T Consensus        83 d~~i~v~d~~~~~s~~   98 (173)
T cd04154          83 DALIWVVDSSDRLRLD   98 (173)
T ss_pred             CEEEEEEECCCHHHHH
Confidence            9999999987765443

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.72  E-value=2.9e-17  Score=108.88  Aligned_cols=84  Identities=32%  Similarity=0.509  Sum_probs=74.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|.+|||||||++.+...++....||.+++...+......+.+||++|+++++.+|+.||+++++++.++|.+...
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~   81 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE   81 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence            68999999999999999998777767789988887778888899999999999999999999999999999999998766


Q ss_pred             cccc
Q 033893          102 FYEV  105 (109)
Q Consensus       102 ~~~~  105 (109)
                      +++.
T Consensus        82 s~~~   85 (159)
T cd04150          82 RIGE   85 (159)
T ss_pred             HHHH
Confidence            5543

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04149 Arf6 Arf6 subfamily

Probab=99.71  E-value=5.4e-17  Score=108.68  Aligned_cols=88  Identities=36%  Similarity=0.546  Sum_probs=77.0

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .+..+|+++|++|||||||++.+...++..+.||.+.+...+...+..+.+||++|+++++.+|+.||+++++++.++|.
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~   86 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS   86 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence            35568999999999999999999877777778888888777777889999999999999999999999999999999998


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        87 t~~~s~~~   94 (168)
T cd04149          87 ADRDRIDE   94 (168)
T ss_pred             CchhhHHH
Confidence            87655543

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=3.2e-17  Score=111.99  Aligned_cols=95  Identities=22%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             CCcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCC
Q 033893           15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        15 ~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      +...+..+++++|..++|||+|+.++....| .++.+|++.  ...++.+.+  +.+.+||++||+++|.+.+.|++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            3345557899999999999999999998887 689999984  457777876  68889999999999999999999999


Q ss_pred             EEEEEEeCCCccccccccCC
Q 033893           90 GSFKTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        90 ~~v~~~~~~~~~~~~~~~~w  109 (109)
                      ++|++||++...+++....|
T Consensus        97 vaviVyDit~~~Sfe~t~kW  116 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKW  116 (221)
T ss_pred             EEEEEEeccccchHHHHHHH
Confidence            99999999999999887766

>cd04120 Rab12 Rab12 subfamily

Probab=99.70  E-value=6.4e-17  Score=111.85  Aligned_cols=88  Identities=16%  Similarity=0.350  Sum_probs=75.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .|+++|.+|+|||||++.+....| .++.||.+.  ....+.+++  +.+.+||++|+++++.+|+.||++++++++++|
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD   81 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD   81 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence            478999999999999999998877 456677653  345677877  677899999999999999999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++...+++....|
T Consensus        82 vtd~~Sf~~l~~w   94 (202)
T cd04120          82 ITKKETFDDLPKW   94 (202)
T ss_pred             CcCHHHHHHHHHH
Confidence            9998888776555

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.70  E-value=7.9e-17  Score=107.58  Aligned_cols=83  Identities=36%  Similarity=0.486  Sum_probs=73.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|++|||||||++.+.+.....+.||.++...++..++..+.+||++|+++++.+|+.|++++++++.++|.+...
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            37899999999999999999874457789998888888889999999999999999999999999999999999987765


Q ss_pred             ccc
Q 033893          102 FYE  104 (109)
Q Consensus       102 ~~~  104 (109)
                      +++
T Consensus        81 s~~   83 (167)
T cd04161          81 RVQ   83 (167)
T ss_pred             HHH
Confidence            554

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04158 ARD1 ARD1 subfamily

Probab=99.69  E-value=1.3e-16  Score=106.51  Aligned_cols=85  Identities=33%  Similarity=0.537  Sum_probs=75.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|++|||||||++++.+..+..+.||.++....+.+++..+.+||++|+++++..|..|++++++++.+++.+...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            57899999999999999999887777889988877788888899999999999999999999999999999999998776


Q ss_pred             ccccc
Q 033893          102 FYEVE  106 (109)
Q Consensus       102 ~~~~~  106 (109)
                      +++..
T Consensus        81 s~~~~   85 (169)
T cd04158          81 RVSEA   85 (169)
T ss_pred             HHHHH
Confidence            55543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.67  E-value=2.7e-16  Score=104.85  Aligned_cols=82  Identities=33%  Similarity=0.447  Sum_probs=72.1

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           23 ILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      |+++|++|+|||||++.+.+..+ ..+.||.++....+..++..+.+||++|+++++.+|+.|++++++++.++|.+...
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~   81 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE   81 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence            78999999999999999998765 56789988876677777899999999999999999999999999999999987765


Q ss_pred             ccc
Q 033893          102 FYE  104 (109)
Q Consensus       102 ~~~  104 (109)
                      +++
T Consensus        82 s~~   84 (164)
T cd04162          82 RLP   84 (164)
T ss_pred             HHH
Confidence            544

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.66  E-value=3.9e-16  Score=101.18  Aligned_cols=82  Identities=27%  Similarity=0.458  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      +|+++|++|||||||++++.+.++ .++.||.+++...+..++..+.+||++|+++++..|..|+..+++++.+++.+..
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   80 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR   80 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence            478999999999999999999876 5688888888778888889999999999999999999999999999999998765


Q ss_pred             ccc
Q 033893          101 DFY  103 (109)
Q Consensus       101 ~~~  103 (109)
                      ..+
T Consensus        81 ~~~   83 (159)
T cd04159          81 TAL   83 (159)
T ss_pred             HHH
Confidence            443

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01875 RhoG RhoG subfamily

Probab=99.66  E-value=3.3e-16  Score=106.85  Aligned_cols=88  Identities=18%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE-EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g-~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .-+|+++|.+|+|||+|++.+....| .++.||.+.... .+.+++  +.+.+||++|+++++.+++.||++++++++++
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy   82 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF   82 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence            35799999999999999999998887 577888864432 345665  67789999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +++...+++...
T Consensus        83 dit~~~Sf~~~~   94 (191)
T cd01875          83 SIASPSSYENVR   94 (191)
T ss_pred             ECCCHHHHHHHH
Confidence            999988887654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.66  E-value=7.1e-16  Score=103.51  Aligned_cols=86  Identities=33%  Similarity=0.527  Sum_probs=76.1

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .+..+|+++|++|+|||||++.+.+..+....||.+.+.+.+.+++..+.+||++|++.++..|+.+++++++++.++|.
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~   92 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS   92 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence            34568999999999999999999987776678888888888888899999999999999999999999999999999998


Q ss_pred             CCcccc
Q 033893           98 EFRDFY  103 (109)
Q Consensus        98 ~~~~~~  103 (109)
                      +...++
T Consensus        93 s~~~~~   98 (174)
T cd04153          93 TDRERL   98 (174)
T ss_pred             CCHHHH
Confidence            765543

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04155 Arl3 Arl3 subfamily

Probab=99.66  E-value=7.1e-16  Score=102.58  Aligned_cols=92  Identities=30%  Similarity=0.496  Sum_probs=77.0

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      ++......-++.+++++|++|||||||++.+.+..+....|+.++....+..++..+.+||.+|+.+.+..|..++++++
T Consensus         4 ~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   83 (173)
T cd04155           4 LLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTD   83 (173)
T ss_pred             HHHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCC
Confidence            34444334456779999999999999999999987766778777777788889999999999999988889999999999


Q ss_pred             EEEEEEeCCCcc
Q 033893           90 GSFKTKKIEFRD  101 (109)
Q Consensus        90 ~~v~~~~~~~~~  101 (109)
                      +++.++|.+...
T Consensus        84 ~ii~v~D~~~~~   95 (173)
T cd04155          84 CLIYVIDSADKK   95 (173)
T ss_pred             EEEEEEeCCCHH
Confidence            999999886543

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.65  E-value=7.3e-16  Score=103.86  Aligned_cols=85  Identities=20%  Similarity=0.202  Sum_probs=73.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE-EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g-~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|.+|+|||||++.+....+ .++.||.+.... ++.+++  +.+.+||++|+++++.+++.|+++++++++++++
T Consensus         3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~   82 (175)
T cd01874           3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV   82 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEEC
Confidence            689999999999999999998877 578888875443 566777  6778999999999999999999999999999999


Q ss_pred             CCccccccc
Q 033893           98 EFRDFYEVE  106 (109)
Q Consensus        98 ~~~~~~~~~  106 (109)
                      +...+++..
T Consensus        83 ~~~~s~~~~   91 (175)
T cd01874          83 VSPSSFENV   91 (175)
T ss_pred             CCHHHHHHH
Confidence            888777654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04121 Rab40 Rab40 subfamily

Probab=99.65  E-value=7.6e-16  Score=105.45  Aligned_cols=90  Identities=18%  Similarity=0.235  Sum_probs=75.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|..|+|||||++.+....+ .++.|+.+.+  .-++.+++  +.+.+||++|+++++.+|+.|++++++++++
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV   85 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV   85 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            35799999999999999999998776 3455665543  34566777  6778899999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      +|++...+++....|
T Consensus        86 fD~t~~~Sf~~~~~w  100 (189)
T cd04121          86 YDITNRWSFDGIDRW  100 (189)
T ss_pred             EECcCHHHHHHHHHH
Confidence            999999888876655

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04128 Spg1 Spg1p

Probab=99.64  E-value=8.9e-16  Score=104.23  Aligned_cols=88  Identities=20%  Similarity=0.219  Sum_probs=74.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +++++|.+|+|||||++.+.+..+. ++.||.+.+.  ..+.+++  +.+.+||++|+++++.+|+.|++++++++.++|
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D   81 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFD   81 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEE
Confidence            6899999999999999999987774 5788887554  4677777  577899999999999999999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++...+++....|
T Consensus        82 ~t~~~s~~~i~~~   94 (182)
T cd04128          82 LTRKSTLNSIKEW   94 (182)
T ss_pred             CcCHHHHHHHHHH
Confidence            9888877665444

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.64  E-value=8.1e-16  Score=105.42  Aligned_cols=88  Identities=16%  Similarity=0.317  Sum_probs=72.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +|+++|++|+|||||++.+.+..+ ..+.||.+.+  ...+.++ +  +.+.+||++|+++++.+|+.|+++++++++++
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~   81 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVF   81 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEE
Confidence            689999999999999999998776 4567887643  3455665 3  67889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |++...+++....|
T Consensus        82 D~t~~~s~~~~~~~   95 (201)
T cd04107          82 DVTRPSTFEAVLKW   95 (201)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99888777654433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04157 Arl6 Arl6 subfamily

Probab=99.64  E-value=9e-16  Score=100.74  Aligned_cols=82  Identities=34%  Similarity=0.523  Sum_probs=71.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      +|+++|++|||||||++.+.+..+  ....||.++....+..++..+.+||++|+++++.+|+.|++++++++.++|.+.
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            478999999999999999998742  457788887777777788999999999999999999999999999999999876


Q ss_pred             cccc
Q 033893          100 RDFY  103 (109)
Q Consensus       100 ~~~~  103 (109)
                      ..++
T Consensus        81 ~~~~   84 (162)
T cd04157          81 RLRL   84 (162)
T ss_pred             HHHH
Confidence            5544

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.63  E-value=1.4e-15  Score=102.95  Aligned_cols=86  Identities=33%  Similarity=0.469  Sum_probs=72.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE-----CCEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-----GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~-----~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|.+|||||||++.+.+..+.+..||.+++...+.+     .++.+.+||++|+++++.+|+.|++++++++.
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            4668999999999999999999988776667888766655544     34789999999999999999999999999999


Q ss_pred             EEeCCCccccc
Q 033893           94 TKKIEFRDFYE  104 (109)
Q Consensus        94 ~~~~~~~~~~~  104 (109)
                      ++|.+...+++
T Consensus        82 v~D~~~~~~~~   92 (183)
T cd04152          82 VVDSVDVERME   92 (183)
T ss_pred             EEECCCHHHHH
Confidence            99987654443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PLN00023 GTP-binding protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=111.95  Aligned_cols=91  Identities=18%  Similarity=0.341  Sum_probs=76.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC---------------CEEEEEEEcCCccccccc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG---------------KIKFKAFDLGGHQIARRV   80 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~---------------~~~i~~~d~~g~~~~r~~   80 (109)
                      ...+|+++|.+|+|||||++.+.+..+ ....||++.+.  ..+.++               .+.+.+||++|+++++.+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            345789999999999999999998876 46788887653  456654               256889999999999999


Q ss_pred             HHhhhhcCCEEEEEEeCCCccccccccCC
Q 033893           81 WKDYYAKVIGSFKTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~w  109 (109)
                      |+.||++++++|+++|++...+++....|
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kW  128 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKW  128 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHH
Confidence            99999999999999999998887765554

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.63  E-value=1.5e-15  Score=103.41  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=75.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ..+|+++|.+|+|||+|++.+....+ .++.||.+... -.+.+++  +.+.+||++|+++++.+++.||++++++++++
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvy   84 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   84 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEE
Confidence            45789999999999999999998877 56788886433 3456665  57889999999999999999999999999999


Q ss_pred             eCCCccccccc-cCC
Q 033893           96 KIEFRDFYEVE-IFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~-~~w  109 (109)
                      |++...+++.. ..|
T Consensus        85 Dit~~~Sf~~~~~~w   99 (182)
T cd04172          85 DISRPETLDSVLKKW   99 (182)
T ss_pred             ECCCHHHHHHHHHHH
Confidence            99988888764 444

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04117 Rab15 Rab15 subfamily

Probab=99.62  E-value=2.1e-15  Score=99.94  Aligned_cols=88  Identities=23%  Similarity=0.437  Sum_probs=73.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|+|||||++.+...++ .++.||.+.+.  ..+.+++  ..+.+||.+|+++++.+++.|++++++++.++|
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD   81 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence            689999999999999999998777 45678877543  4566666  567899999999999999999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++...+++....|
T Consensus        82 ~~~~~sf~~~~~~   94 (161)
T cd04117          82 ISSERSYQHIMKW   94 (161)
T ss_pred             CCCHHHHHHHHHH
Confidence            9888777765444

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.62  E-value=1.6e-15  Score=104.94  Aligned_cols=88  Identities=17%  Similarity=0.305  Sum_probs=74.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC-------CEEEEEEEcCCcccccccHHhhhhcCCEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG-------KIKFKAFDLGGHQIARRVWKDYYAKVIGS   91 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~-------~~~i~~~d~~g~~~~r~~~~~~~~~~~~~   91 (109)
                      +|+++|.+|+|||+|++.+.+..+ .+..||++.+.  ..+.++       .+.+.+||++|+++++.+++.||++++++
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~i   81 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGI   81 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEE
Confidence            689999999999999999998876 45778877432  344442       26788999999999999999999999999


Q ss_pred             EEEEeCCCccccccccCC
Q 033893           92 FKTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        92 v~~~~~~~~~~~~~~~~w  109 (109)
                      ++++|++...+++....|
T Consensus        82 IlVyDvtn~~Sf~~l~~W   99 (202)
T cd04102          82 ILVHDLTNRKSSQNLQRW   99 (202)
T ss_pred             EEEEECcChHHHHHHHHH
Confidence            999999999888877666

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.62  E-value=1.6e-15  Score=105.71  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=75.7

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEE--EC--CEEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELS--IG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~--~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      ....+|+++|.+|+|||||++.+....+ ..+.||.+.+...+.  .+  ...+.+||++|+++++.+|..||++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4456899999999999999999887776 567888876554433  33  368889999999999999999999999999


Q ss_pred             EEEeCCCccccccccCC
Q 033893           93 KTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        93 ~~~~~~~~~~~~~~~~w  109 (109)
                      +++|++...+++....|
T Consensus        91 lvfD~~~~~s~~~i~~w  107 (219)
T PLN03071         91 IMFDVTARLTYKNVPTW  107 (219)
T ss_pred             EEEeCCCHHHHHHHHHH
Confidence            99999988877665444

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.3e-15  Score=104.95  Aligned_cols=89  Identities=24%  Similarity=0.372  Sum_probs=78.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+++++|.+|+|||.++.++....| ...+.|++  |..-+|.+++  +.+.+||.+||+++|++...||+.+.+++.++
T Consensus        13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lvy   92 (207)
T KOG0078|consen   13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   92 (207)
T ss_pred             EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEE
Confidence            4689999999999999999998888 46777887  4457888888  56779999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |++...+++....|
T Consensus        93 Ditne~Sfeni~~W  106 (207)
T KOG0078|consen   93 DITNEKSFENIRNW  106 (207)
T ss_pred             EccchHHHHHHHHH
Confidence            99999999887666

>cd04136 Rap_like Rap-like subfamily

Probab=99.62  E-value=3.1e-15  Score=98.27  Aligned_cols=86  Identities=15%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|++|||||||++.+....+ .++.||.+ .....+.+++  ..+.+||++|+++++.+|+.|++++++++++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            4789999999999999999997776 45667665 2235566776  456789999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      ++...+++..
T Consensus        82 ~~~~~s~~~~   91 (163)
T cd04136          82 ITSQSSFNDL   91 (163)
T ss_pred             CCCHHHHHHH
Confidence            9877666543

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04151 Arl1 Arl1 subfamily

Probab=99.62  E-value=2e-15  Score=99.38  Aligned_cols=81  Identities=37%  Similarity=0.545  Sum_probs=71.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|++|+|||||++++....+....||.+++...+...+..+.+||++|+++++.+|+.|+..+++++.+++.+...
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            57999999999999999998777767788888887788888899999999999999999999999999999999987654


Q ss_pred             c
Q 033893          102 F  102 (109)
Q Consensus       102 ~  102 (109)
                      +
T Consensus        81 ~   81 (158)
T cd04151          81 R   81 (158)
T ss_pred             H
Confidence            3

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.62  E-value=2.8e-15  Score=100.67  Aligned_cols=88  Identities=18%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ..+|+++|.+|+|||||++.+.+.++. ++.||.+... .++.+++  ..+.+||++|+++++.+|+.|++.++++++++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            357899999999999999999988774 6778876433 3567777  56788999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +.+...+++...
T Consensus        82 d~~~~~Sf~~~~   93 (172)
T cd04141          82 SVTDRHSFQEAS   93 (172)
T ss_pred             ECCchhHHHHHH
Confidence            998887776544

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.62  E-value=2.7e-15  Score=98.61  Aligned_cols=86  Identities=21%  Similarity=0.354  Sum_probs=71.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|+|||||++++.+.++ ..+.|+.+.+.+  .+.+++  ..+.+||.+|+++++.+++.+++++++++.++|
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D   81 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYD   81 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998876 567788775543  455555  677899999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      .+...+++...
T Consensus        82 ~~~~~s~~~~~   92 (168)
T cd04119          82 VTDRQSFEALD   92 (168)
T ss_pred             CCCHHHHHhHH
Confidence            98776665443

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04126 Rab20 Rab20 subfamily

Probab=99.62  E-value=2.1e-15  Score=105.63  Aligned_cols=86  Identities=21%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|.+|+|||||++.+...++.+..||.+.+.....+..+.+.+||++|+++++.+++.|+++++++++++|++...
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~   81 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ   81 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999888877788887665555556788999999999999999999999999999999998877


Q ss_pred             cccccc
Q 033893          102 FYEVEI  107 (109)
Q Consensus       102 ~~~~~~  107 (109)
                      +++...
T Consensus        82 Sf~~l~   87 (220)
T cd04126          82 SLEELE   87 (220)
T ss_pred             HHHHHH
Confidence            776543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04131 Rnd Rnd subfamily

Probab=99.62  E-value=2e-15  Score=102.27  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=73.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|.+|+|||+|++.+.+..+ .++.||.+... -.+.+++  +.+.+||++|+++++.+.+.|+++++++++++|
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd   81 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD   81 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence            4789999999999999999998877 46778875332 3456666  567799999999999999999999999999999


Q ss_pred             CCCccccccc-cCC
Q 033893           97 IEFRDFYEVE-IFW  109 (109)
Q Consensus        97 ~~~~~~~~~~-~~w  109 (109)
                      ++...+++.. ..|
T Consensus        82 it~~~Sf~~~~~~w   95 (178)
T cd04131          82 ISRPETLDSVLKKW   95 (178)
T ss_pred             CCChhhHHHHHHHH
Confidence            9988888763 444

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=99.61  E-value=3.4e-15  Score=98.99  Aligned_cols=89  Identities=24%  Similarity=0.391  Sum_probs=71.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|+.|+|||||++.+...++. +..||.+.+..  .+.+++  +.+.+||++|+++++..++.|++++++++.++
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   82 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   82 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999988774 45566654433  345665  56789999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |.+...+++....|
T Consensus        83 d~~~~~s~~~~~~~   96 (166)
T cd04122          83 DITRRSTYNHLSSW   96 (166)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99887777654443

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04133 Rop_like Rop subfamily

Probab=99.61  E-value=3.1e-15  Score=101.38  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +++++|.+|+|||+|++++....| .++.||.+... -.+.+++  +.+.+||++|+++++.+++.|+++++++++++|+
T Consensus         3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~   82 (176)
T cd04133           3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   82 (176)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEc
Confidence            689999999999999999998887 46889886433 3456665  6778999999999999999999999999999999


Q ss_pred             CCccccccc-cCC
Q 033893           98 EFRDFYEVE-IFW  109 (109)
Q Consensus        98 ~~~~~~~~~-~~w  109 (109)
                      +...+++.. ..|
T Consensus        83 ~~~~Sf~~~~~~w   95 (176)
T cd04133          83 ISRASYENVLKKW   95 (176)
T ss_pred             CCHHHHHHHHHHH
Confidence            999888775 344

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04176 Rap2 Rap2 subgroup

Probab=99.61  E-value=4.8e-15  Score=97.71  Aligned_cols=87  Identities=15%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|.+|+|||||++.+....+ .+..||.. +...++.+++  ..+.+||++|+++++.+|+.|++++++++++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d   81 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence            4789999999999999999987776 45566654 3345677776  456789999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      ++...+++...
T Consensus        82 ~~~~~s~~~~~   92 (163)
T cd04176          82 LVNQQTFQDIK   92 (163)
T ss_pred             CCCHHHHHHHH
Confidence            98876665433

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.61  E-value=3.1e-15  Score=98.22  Aligned_cols=83  Identities=34%  Similarity=0.507  Sum_probs=71.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC-CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~-~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      +|+++|++|||||||++.+.+.++....||.+.....+..+ ...+.+||++|+++++..|..++.++++++.++|.+..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            47899999999999999999888766788888777777665 47899999999999999999999999999999998665


Q ss_pred             cccc
Q 033893          101 DFYE  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      .+++
T Consensus        81 ~~~~   84 (160)
T cd04156          81 ARLD   84 (160)
T ss_pred             HHHH
Confidence            4433

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.61  E-value=3.3e-15  Score=100.17  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ++|+++|.+|+|||||++++.+..+ .++.||.+.+.  ..+.+++  ..+.+||++|++++..+++.+++++++++.++
T Consensus         1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   80 (170)
T cd04108           1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF   80 (170)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence            4789999999999999999998877 46778876443  4556665  56889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +.+...+++....|
T Consensus        81 d~~~~~s~~~~~~~   94 (170)
T cd04108          81 DLTDVASLEHTRQW   94 (170)
T ss_pred             ECcCHHHHHHHHHH
Confidence            99877666654444

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PTZ00369 Ras-like protein; Provisional

Probab=99.60  E-value=2.8e-15  Score=101.90  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=73.1

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      .++.+|+++|.+|+|||||++.+.+.++ .++.||.+... ..+.+++  +.+.+||++|+++++.+|..|+++++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            3457899999999999999999998776 46677766433 3455665  467789999999999999999999999999


Q ss_pred             EEeCCCcccccccc
Q 033893           94 TKKIEFRDFYEVEI  107 (109)
Q Consensus        94 ~~~~~~~~~~~~~~  107 (109)
                      +++.+...+++...
T Consensus        83 v~D~s~~~s~~~~~   96 (189)
T PTZ00369         83 VYSITSRSSFEEIA   96 (189)
T ss_pred             EEECCCHHHHHHHH
Confidence            99998877665443

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.60  E-value=4.9e-15  Score=97.23  Aligned_cols=83  Identities=36%  Similarity=0.550  Sum_probs=74.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|..|||||||++++.+.+.....|+.+.....+.+++..+.+||++|+++++..|+.++.++++++.++|.+...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            57999999999999999999888777888888888888888999999999999999999999999999999999987765


Q ss_pred             ccc
Q 033893          102 FYE  104 (109)
Q Consensus       102 ~~~  104 (109)
                      +++
T Consensus        81 ~~~   83 (158)
T cd00878          81 RIE   83 (158)
T ss_pred             HHH
Confidence            443

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.60  E-value=6.2e-15  Score=96.34  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=68.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|++|+|||||++++.+.++ ....||.+.. ...+.+++  +.+.+||++|+++++.+++.|++++++++.+++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~   81 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   81 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence            4789999999999999999998776 4566766532 34455666  457789999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      ++...+++.
T Consensus        82 ~~~~~s~~~   90 (162)
T cd04138          82 INSRKSFED   90 (162)
T ss_pred             CCCHHHHHH
Confidence            877655544

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.60  E-value=4.3e-15  Score=104.19  Aligned_cols=86  Identities=21%  Similarity=0.258  Sum_probs=73.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|.+|+|||+|++.+.+..+ .++.||...+. ..+.+++  +.+.+||++|++.++.+++.||+++++++++++
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            4789999999999999999998877 46889887543 3566666  567789999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      ++...+++..
T Consensus        82 is~~~Sf~~i   91 (222)
T cd04173          82 ISRPETLDSV   91 (222)
T ss_pred             CCCHHHHHHH
Confidence            9988877664

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01865 Rab3 Rab3 subfamily

Probab=99.60  E-value=4.7e-15  Score=98.34  Aligned_cols=89  Identities=20%  Similarity=0.342  Sum_probs=72.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|++|||||||++.+.+.++ ..+.||.+.+  ..++..++  ..+.+||.+|+++++.+|..+++++++++.++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            3789999999999999999998877 4566776533  33555554  67889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |.+...+++....|
T Consensus        82 d~~~~~s~~~~~~~   95 (165)
T cd01865          82 DITNEESFNAVQDW   95 (165)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99877776654444

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04175 Rap1 Rap1 subgroup

Probab=99.59  E-value=7.8e-15  Score=96.89  Aligned_cols=86  Identities=15%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|.+|||||||++.+....+ ..+.||.+.. .-.+.+++  +.+.+||++|+++++.+++.|++++++++++++
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS   81 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence            5789999999999999999986665 4566766533 23566665  456689999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      ++...+++..
T Consensus        82 ~~~~~s~~~~   91 (164)
T cd04175          82 ITAQSTFNDL   91 (164)
T ss_pred             CCCHHHHHHH
Confidence            8776666543

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=2.3e-15  Score=99.96  Aligned_cols=89  Identities=25%  Similarity=0.436  Sum_probs=74.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+++++|+.|+|||.||+.+...++. ...-|++.+.|  -|.+++  +++.+||.+||+++|++.++||+.+.+.+.++
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY   89 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   89 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence            36899999999999999999988874 34445664444  466666  67889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |++.++++.....|
T Consensus        90 D~TsrdsfnaLtnW  103 (214)
T KOG0086|consen   90 DITSRDSFNALTNW  103 (214)
T ss_pred             eccchhhHHHHHHH
Confidence            99999988776554

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=4.6e-15  Score=100.92  Aligned_cols=90  Identities=26%  Similarity=0.388  Sum_probs=77.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+++++|..|+|||.||..+....| +-+..|++.+.  ..+.+++  +++++||++|++.+|++.+.||+.+.+++++
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV   85 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV   85 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence            45789999999999999999999887 44556777544  4677777  6777999999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      ||++.++++.+...|
T Consensus        86 ydit~r~sF~hL~~w  100 (216)
T KOG0098|consen   86 YDITRRESFNHLTSW  100 (216)
T ss_pred             EEccchhhHHHHHHH
Confidence            999999998877666

>cd04127 Rab27A Rab27a subfamily

Probab=99.59  E-value=6.6e-15  Score=98.56  Aligned_cols=89  Identities=18%  Similarity=0.287  Sum_probs=71.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC------------CEEEEEEEcCCcccccccHHhhh
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG------------KIKFKAFDLGGHQIARRVWKDYY   85 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~------------~~~i~~~d~~g~~~~r~~~~~~~   85 (109)
                      -+|+++|++|+|||||++.+.+..+ ..+.||.+.+.  ..+.++            ...+.+||.+|+++++.+++.|+
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF   84 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence            5789999999999999999998776 45677776433  334443            26788999999999999999999


Q ss_pred             hcCCEEEEEEeCCCccccccccCC
Q 033893           86 AKVIGSFKTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~~~~~w  109 (109)
                      ++++++++++|.+...++.....|
T Consensus        85 ~~~~~~i~v~d~~~~~s~~~~~~~  108 (180)
T cd04127          85 RDAMGFLLIFDLTNEQSFLNVRNW  108 (180)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHH
Confidence            999999999999877776654433

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.58  E-value=9e-16  Score=113.58  Aligned_cols=76  Identities=22%  Similarity=0.273  Sum_probs=62.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .+++++++++++|++ +|+|||||||||+|++|+|.        ..|+.|+|.++|.++.  +++...+           
T Consensus        19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf--------e~p~~G~I~l~G~~i~--~lpp~kR-----------   77 (352)
T COG3842          19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--------EQPSSGEILLDGEDIT--DVPPEKR-----------   77 (352)
T ss_pred             eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC--CCChhhc-----------
Confidence            368899999999997 89999999999999999999        8899999999999887  5543322           


Q ss_pred             CCEEEEEEeCCCccccccc
Q 033893           88 VIGSFKTKKIEFRDFYEVE  106 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~~~  106 (109)
                       +.-++++++.+|||++++
T Consensus        78 -~ig~VFQ~YALFPHltV~   95 (352)
T COG3842          78 -PIGMVFQSYALFPHMTVE   95 (352)
T ss_pred             -ccceeecCcccCCCCcHH
Confidence             344566777888887764

>cd04116 Rab9 Rab9 subfamily

Probab=99.58  E-value=8.4e-15  Score=97.25  Aligned_cols=88  Identities=16%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|++|+|||||++++.+..+. ...|+.+.+  ..++.+++  ..+.+||++|+++++.++..|++++++++.++
T Consensus         6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (170)
T cd04116           6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTF   85 (170)
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEE
Confidence            46899999999999999999987764 456666543  23556666  56678999999999999999999999999999


Q ss_pred             eCCCccccccccC
Q 033893           96 KIEFRDFYEVEIF  108 (109)
Q Consensus        96 ~~~~~~~~~~~~~  108 (109)
                      +++...+++....
T Consensus        86 d~~~~~s~~~~~~   98 (170)
T cd04116          86 AVDDSQSFQNLSN   98 (170)
T ss_pred             ECCCHHHHHhHHH
Confidence            9987776665443

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.58  E-value=8.7e-15  Score=103.26  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ...+|+++|.+|+|||+|++.+....| .++.||++.+. -.+.+++  +.+.+||++|+++++.+++.||+++++++++
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            345789999999999999999998877 56788876432 3456665  6788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      +|++...+++.
T Consensus        92 yDit~~~Sf~~  102 (232)
T cd04174          92 FDISRPETVDS  102 (232)
T ss_pred             EECCChHHHHH
Confidence            99998888875

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04109 Rab28 Rab28 subfamily

Probab=99.58  E-value=9.1e-15  Score=101.37  Aligned_cols=88  Identities=22%  Similarity=0.360  Sum_probs=72.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +|+++|.+|+|||||++.+.+..+ ..+.||.+.+  ...+.++   ...+.+||++|++.++.+++.|++++|+++.++
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~   81 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVY   81 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEE
Confidence            689999999999999999998877 4577887644  3456664   368889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |.+...+++....|
T Consensus        82 D~t~~~s~~~~~~w   95 (215)
T cd04109          82 DVTNSQSFENLEDW   95 (215)
T ss_pred             ECCCHHHHHHHHHH
Confidence            99887776654433

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.7e-15  Score=103.47  Aligned_cols=89  Identities=21%  Similarity=0.398  Sum_probs=77.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|+|||-||-++..++| .+.-+|++  |...++.+++  +...+||.+||+++|.+-..||+.+.+.+++|
T Consensus        15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVY   94 (222)
T KOG0087|consen   15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   94 (222)
T ss_pred             EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEE
Confidence            4689999999999999999999988 45667777  4445677787  56679999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |++...+++...+|
T Consensus        95 DITr~~Tfenv~rW  108 (222)
T KOG0087|consen   95 DITRRQTFENVERW  108 (222)
T ss_pred             echhHHHHHHHHHH
Confidence            99999999988777

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.57  E-value=1.2e-14  Score=96.60  Aligned_cols=88  Identities=20%  Similarity=0.292  Sum_probs=72.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|++|+|||||++.+.+..+ ..+.|+.+.+.  ..+.+++  ..+.+||++|++++...+..++++++++++++
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~   83 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVY   83 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEE
Confidence            4789999999999999999998877 45677776433  4566666  56789999999999999999999999999999


Q ss_pred             eCCCccccccccC
Q 033893           96 KIEFRDFYEVEIF  108 (109)
Q Consensus        96 ~~~~~~~~~~~~~  108 (109)
                      +.+...+++....
T Consensus        84 d~~~~~s~~~~~~   96 (167)
T cd01867          84 DITDEKSFENIRN   96 (167)
T ss_pred             ECcCHHHHHhHHH
Confidence            9987777665433

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.57  E-value=1.5e-14  Score=95.67  Aligned_cols=87  Identities=20%  Similarity=0.292  Sum_probs=70.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+++++|++|+|||||++++.+.++ ..+.|+.+.+  ...+.+++  ..+.+||.+|++++...++.+++++++++.++
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~   82 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   82 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence            3689999999999999999998776 3556666533  34566665  46789999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      |.+...+++...
T Consensus        83 d~~~~~s~~~l~   94 (166)
T cd01869          83 DVTDQESFNNVK   94 (166)
T ss_pred             ECcCHHHHHhHH
Confidence            998776665543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04144 Ras2 Ras2 subfamily

Probab=99.57  E-value=1.2e-14  Score=98.83  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|.+|+|||||++.+....+ ..+.||.+.. ...+.+++.  .+.+||++|+++++.+++.|+++++++++++++
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            478999999999999999997777 4466776533 234556664  577899999999999999999999999999999


Q ss_pred             CCcccccccc
Q 033893           98 EFRDFYEVEI  107 (109)
Q Consensus        98 ~~~~~~~~~~  107 (109)
                      +...+++...
T Consensus        81 ~~~~s~~~~~   90 (190)
T cd04144          81 TSRSTFERVE   90 (190)
T ss_pred             CCHHHHHHHH
Confidence            8777665533

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.57  E-value=1.1e-14  Score=99.02  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|++|+|||||++.+.+..+. ++.||..... ..+.+++  ..+.+||++|+++++.+++.|+++++++++++++
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            6899999999999999999988774 4677775432 3455665  5788999999999999999999999999999999


Q ss_pred             CCccccccc
Q 033893           98 EFRDFYEVE  106 (109)
Q Consensus        98 ~~~~~~~~~  106 (109)
                      +...+++..
T Consensus        82 ~~~~sf~~~   90 (189)
T cd04134          82 DSPDSLENV   90 (189)
T ss_pred             CCHHHHHHH
Confidence            888777643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.57  E-value=1.5e-14  Score=95.82  Aligned_cols=86  Identities=20%  Similarity=0.225  Sum_probs=67.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|.+|+|||||++.+...++. ...|+.+++.  -.+.+++  ..+.+||++|+++++.+++.|++++++++.++|
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   81 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFD   81 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEE
Confidence            6899999999999999999987764 4455544332  2344554  567799999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      .+...+++...
T Consensus        82 ~~~~~s~~~~~   92 (161)
T cd04124          82 VTRKITYKNLS   92 (161)
T ss_pred             CCCHHHHHHHH
Confidence            87766655433

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.1e-15  Score=99.01  Aligned_cols=85  Identities=36%  Similarity=0.547  Sum_probs=78.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ++-++.++|..|+||||++..+.-.+..++.||.+++.++|.+.+.++..||++|+..+|..|+-||.+.++++.+.|-+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDss   96 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSS   96 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEecc
Confidence            67789999999999999999999888889999999999999999999999999999999999999999999999988876


Q ss_pred             Ccccc
Q 033893           99 FRDFY  103 (109)
Q Consensus        99 ~~~~~  103 (109)
                      ..++.
T Consensus        97 d~dri  101 (182)
T KOG0072|consen   97 DRDRI  101 (182)
T ss_pred             chhhh
Confidence            55543

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.56  E-value=1.2e-14  Score=95.41  Aligned_cols=87  Identities=15%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC----CEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +|+++|.+|+|||||++.+.+..+ ....||.+.+.  ..+.++    ...+.+||++|+++++.+++.|++++++++.+
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v   81 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV   81 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence            689999999999999999998776 45667766443  344444    36788999999999999999999999999999


Q ss_pred             EeCCCccccccccC
Q 033893           95 KKIEFRDFYEVEIF  108 (109)
Q Consensus        95 ~~~~~~~~~~~~~~  108 (109)
                      ++.+...+++....
T Consensus        82 ~d~~~~~s~~~l~~   95 (162)
T cd04106          82 FSTTDRESFEAIES   95 (162)
T ss_pred             EECCCHHHHHHHHH
Confidence            99887766655433

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.9e-15  Score=111.30  Aligned_cols=74  Identities=24%  Similarity=0.321  Sum_probs=61.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV   88 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~   88 (109)
                      ++++++++++.|++ +|+|||||||||+||+|+|.        ..++.|+|.++|.+++  |++..++            
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL--------e~~~~G~I~i~g~~vt--~l~P~~R------------   75 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--------EEPTSGEILIDGRDVT--DLPPEKR------------   75 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC--CCChhHC------------
Confidence            68899999999996 99999999999999999999        8899999999999988  6655443            


Q ss_pred             CEEEEEEeCCCcccccc
Q 033893           89 IGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        89 ~~~v~~~~~~~~~~~~~  105 (109)
                      +..++++++.++|+.++
T Consensus        76 ~iamVFQ~yALyPhmtV   92 (338)
T COG3839          76 GIAMVFQNYALYPHMTV   92 (338)
T ss_pred             CEEEEeCCccccCCCcH
Confidence            45555666666666554

>PLN03108 Rab family protein; Provisional

Probab=99.56  E-value=1.6e-14  Score=99.91  Aligned_cols=88  Identities=24%  Similarity=0.382  Sum_probs=72.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+|+|++|+|||||++.+.+.++ ....||.+.+  .+.+.+++  +.+.+||++|+++++.+++.++++++++++++
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~   86 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEE
Confidence            5789999999999999999998876 3466777654  45677776  45779999999999999999999999999999


Q ss_pred             eCCCccccccccC
Q 033893           96 KIEFRDFYEVEIF  108 (109)
Q Consensus        96 ~~~~~~~~~~~~~  108 (109)
                      +.+...+++....
T Consensus        87 D~~~~~s~~~l~~   99 (210)
T PLN03108         87 DITRRETFNHLAS   99 (210)
T ss_pred             ECCcHHHHHHHHH
Confidence            9987776665433

>cd01864 Rab19 Rab19 subfamily

Probab=99.56  E-value=1.7e-14  Score=95.42  Aligned_cols=89  Identities=26%  Similarity=0.423  Sum_probs=72.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|++|||||||++.+.+..+. +..|+.+.  ..-++.+++  ..+.+||.+|+++++.+++.+++++++++.++
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~   83 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY   83 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence            57899999999999999999877663 45566553  345666777  57789999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +.+...+++....|
T Consensus        84 d~~~~~s~~~~~~~   97 (165)
T cd01864          84 DITRRSSFESVPHW   97 (165)
T ss_pred             ECcCHHHHHhHHHH
Confidence            99887776654433

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=99.56  E-value=1.7e-14  Score=98.87  Aligned_cols=88  Identities=19%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+ ..+.||.+.+.  -++.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv   85 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   85 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence            35789999999999999999998876 45678776443  4555555  5778999999999999999999999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      +|.+...+++...
T Consensus        86 ~D~~~~~s~~~~~   98 (199)
T cd04110          86 YDVTNGESFVNVK   98 (199)
T ss_pred             EECCCHHHHHHHH
Confidence            9998777665443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.56  E-value=1.7e-14  Score=95.29  Aligned_cols=80  Identities=35%  Similarity=0.556  Sum_probs=68.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-------cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-------VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-------~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +|+++|++|||||||++++.+...       ....||.+.+.+.+.+++..+.+||++|++.++.+|..+++++++++.+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            378999999999999999976421       2456777878888999999999999999999999999999999999999


Q ss_pred             EeCCCcc
Q 033893           95 KKIEFRD  101 (109)
Q Consensus        95 ~~~~~~~  101 (109)
                      .|.+...
T Consensus        81 vd~~~~~   87 (167)
T cd04160          81 IDSTDRE   87 (167)
T ss_pred             EECchHH
Confidence            9876543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.55  E-value=2.1e-14  Score=95.71  Aligned_cols=89  Identities=22%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCccccc-ccHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r-~~~~~~~~~~~~~v~~   94 (109)
                      .+|+++|++|+|||||++++.+..+. .+.|+.+.+  ...+.+++  ..+.+||.+|+++++ .+++.|++++++++.+
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v   82 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV   82 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence            47899999999999999999987763 566776533  34566666  678899999999887 5889999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      +|.+...+++....|
T Consensus        83 ~d~~~~~s~~~~~~~   97 (170)
T cd04115          83 YDVTNMASFHSLPSW   97 (170)
T ss_pred             EECCCHHHHHhHHHH
Confidence            999877766554433

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.55  E-value=1.7e-14  Score=96.16  Aligned_cols=86  Identities=20%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEE--C--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSI--G--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~--~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|+.|||||||++++....+ ....||.+.+...+.+  +  ...+.+||++|++++..++..+++.+++++.+++
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   81 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFD   81 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEE
Confidence            689999999999999999987665 4577877655444433  3  3688899999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      .+...+++...
T Consensus        82 ~~~~~s~~~~~   92 (166)
T cd00877          82 VTSRVTYKNVP   92 (166)
T ss_pred             CCCHHHHHHHH
Confidence            98777765443

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.3e-14  Score=96.00  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=75.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccccc-CCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~-~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|--|+|||.|++.+...-|++- ..|++  |..-++.++|  +++.+||.+|++++|++.+.||+.+++++.++
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvy   87 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVY   87 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEE
Confidence            3689999999999999999997666543 33454  5567888887  67779999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |++.-++++-..+|
T Consensus        88 discqpsfdclpew  101 (213)
T KOG0095|consen   88 DISCQPSFDCLPEW  101 (213)
T ss_pred             ecccCcchhhhHHH
Confidence            99999998876666

>cd01868 Rab11_like Rab11-like

Probab=99.55  E-value=2.3e-14  Score=94.59  Aligned_cols=89  Identities=22%  Similarity=0.406  Sum_probs=72.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|++|||||||++++.+.++ ....|+.+.  ...++..++  ..+.+||.+|+++++.+++.++.++++++.++
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   83 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   83 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence            3689999999999999999998876 356677654  345566676  46789999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +.+...+++...+|
T Consensus        84 d~~~~~s~~~~~~~   97 (165)
T cd01868          84 DITKKQTFENVERW   97 (165)
T ss_pred             ECcCHHHHHHHHHH
Confidence            99876666654433

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01892 Miro2 Miro2 subfamily

Probab=99.55  E-value=3.3e-14  Score=95.12  Aligned_cols=85  Identities=14%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .+|+++|.+|+|||||++++.+..+.  ++.||.+.+  ...+.+++  ..+.+||.+|+++++.++..||+++|+++.+
T Consensus         5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv   84 (169)
T cd01892           5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLV   84 (169)
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEE
Confidence            46899999999999999999988774  577887654  34566777  5677899999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      +|.+...+++.
T Consensus        85 ~d~~~~~s~~~   95 (169)
T cd01892          85 YDSSDPKSFSY   95 (169)
T ss_pred             EeCCCHHHHHH
Confidence            99877666554

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.54  E-value=3e-14  Score=95.92  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=71.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+++++|.+|+|||||++.+....+ .++.||..... -.+.+++  ..+.+||++|+++++.+++.|++++++++.+++
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            3689999999999999999998776 56778775332 2455666  567799999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      ++...+++..
T Consensus        82 ~~~~~sf~~~   91 (174)
T cd01871          82 LVSPASFENV   91 (174)
T ss_pred             CCCHHHHHHH
Confidence            9887776654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01861 Rab6 Rab6 subfamily

Probab=99.54  E-value=3.4e-14  Score=93.22  Aligned_cols=85  Identities=20%  Similarity=0.309  Sum_probs=69.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|||||||++.+.+.++. ...|+.+.  ....+.+++  ..+.+||.+|+++++.+++.+++.+++++.+++
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d   81 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   81 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988763 45666553  345566666  467899999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      .+...+++..
T Consensus        82 ~~~~~s~~~~   91 (161)
T cd01861          82 ITNRQSFDNT   91 (161)
T ss_pred             CcCHHHHHHH
Confidence            9876666543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04125 RabA_like RabA-like subfamily

Probab=99.54  E-value=3.1e-14  Score=96.43  Aligned_cols=86  Identities=20%  Similarity=0.339  Sum_probs=71.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|+|||||++.+.+..+.. +.||.+.+  ...+.+++  +.+.+||.+|+++++..++.++.++++++.+++
T Consensus         2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d   81 (188)
T cd04125           2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYD   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEE
Confidence            68999999999999999999888754 67777643  34566665  567789999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      .+...+++...
T Consensus        82 ~~~~~s~~~i~   92 (188)
T cd04125          82 VTDQESFENLK   92 (188)
T ss_pred             CcCHHHHHHHH
Confidence            98777766543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.54  E-value=3.5e-14  Score=98.21  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEE--C--CEEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSI--G--KIKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~--~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      ....+++++|++|||||||++.+....+ ..+.||.+.+...+.+  +  ++.+.+||++|+++++.++..|+.++++++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            3456899999999999999965544444 5677888766554443  2  478889999999999999999999999999


Q ss_pred             EEEeCCCcccccc
Q 033893           93 KTKKIEFRDFYEV  105 (109)
Q Consensus        93 ~~~~~~~~~~~~~  105 (109)
                      .+++++...++..
T Consensus        87 ~v~d~~~~~s~~~   99 (215)
T PTZ00132         87 IMFDVTSRITYKN   99 (215)
T ss_pred             EEEECcCHHHHHH
Confidence            9999986665543

>PLN03110 Rab GTPase; Provisional

Probab=99.53  E-value=3.6e-14  Score=98.67  Aligned_cols=89  Identities=20%  Similarity=0.402  Sum_probs=73.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|++|+|||||++++.+.++ .+..||.+.+  ..++.+++  ..+.+||++|+++++.+++.|+++++++++++
T Consensus        13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~   92 (216)
T PLN03110         13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   92 (216)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEE
Confidence            4789999999999999999998776 4566777643  45677766  57889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      |.+...+++....|
T Consensus        93 d~~~~~s~~~~~~~  106 (216)
T PLN03110         93 DITKRQTFDNVQRW  106 (216)
T ss_pred             ECCChHHHHHHHHH
Confidence            99877666554433

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.53  E-value=4.6e-14  Score=92.76  Aligned_cols=87  Identities=18%  Similarity=0.347  Sum_probs=70.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+++++|++|||||||++.+.+.++.. ..|+.+.  ..-++.+++  ..+.+||.+|+++++..++.+++++++++.++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            478999999999999999999888744 6676653  345666665  56789999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +.+...+++...
T Consensus        82 d~~~~~s~~~~~   93 (163)
T cd01860          82 DITSEESFEKAK   93 (163)
T ss_pred             ECcCHHHHHHHH
Confidence            987766655433

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.53  E-value=4.3e-14  Score=92.95  Aligned_cols=88  Identities=22%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|+|||||++.+.+.++ .+..||.+.+.  -++.+++  ..+.+||.+|++++..+...+++++++++++++
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            689999999999999999998877 46778875443  4555655  568899999999998898999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++...+++....|
T Consensus        81 ~~~~~S~~~~~~~   93 (162)
T PF00071_consen   81 VTDEESFENLKKW   93 (162)
T ss_dssp             TTBHHHHHTHHHH
T ss_pred             ccccccccccccc
Confidence            9988888765544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.7e-14  Score=97.13  Aligned_cols=90  Identities=31%  Similarity=0.494  Sum_probs=77.0

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcC--------cccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDE--------RLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~--------~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      +.-..-.++|+|+++|||||++-+.+..        +.....||++.+.|+|.+++..+..||++||+..|++|..||..
T Consensus        13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence            4444556899999999999999877632        23457899999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCcccccc
Q 033893           88 VIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~~  105 (109)
                      +++++.+.|-+.+.+++.
T Consensus        93 ~H~ii~viDa~~~eR~~~  110 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEE  110 (197)
T ss_pred             hceeEEeecCCCHHHHHH
Confidence            999999999887766554

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.53  E-value=6.5e-14  Score=92.24  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=67.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|++|||||||++++.+.++. ...|+.... .-.+.+++  ..+.+||++|+++++.+++.+++++++++++++.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~   81 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI   81 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC
Confidence            7899999999999999999987763 455655422 23455555  5677899999999999999999999999999998


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        82 ~~~~s~~~   89 (164)
T smart00173       82 TDRQSFEE   89 (164)
T ss_pred             CCHHHHHH
Confidence            87665544

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04118 Rab24 Rab24 subfamily

Probab=99.53  E-value=4.6e-14  Score=95.73  Aligned_cols=84  Identities=19%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCc--eEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPT--SEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~--~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +|+++|.+|+|||||++.+.+.++.  ++.||.+..  ...+.+++.  .+.+||.+|+++++.+++.|+++++++++++
T Consensus         2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~   81 (193)
T cd04118           2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCY   81 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEE
Confidence            6899999999999999999988764  467777643  345677764  5569999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      +.+...+++.
T Consensus        82 d~~~~~s~~~   91 (193)
T cd04118          82 DLTDSSSFER   91 (193)
T ss_pred             ECCCHHHHHH
Confidence            9977766544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.53  E-value=6.8e-14  Score=92.97  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +|+++|++|+|||||++.+....+.+ ..|+.+....++.+++  +.+.+||++|++.     ..|++++++++.++|++
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~   76 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLE   76 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECC
Confidence            68999999999999999887766643 3454444456788888  5578999999975     46788999999999999


Q ss_pred             CccccccccCC
Q 033893           99 FRDFYEVEIFW  109 (109)
Q Consensus        99 ~~~~~~~~~~w  109 (109)
                      ...+++....|
T Consensus        77 ~~~sf~~~~~~   87 (158)
T cd04103          77 NEASFQTVYNL   87 (158)
T ss_pred             CHHHHHHHHHH
Confidence            99888765443

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.53  E-value=1.8e-14  Score=99.45  Aligned_cols=84  Identities=18%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             EeCCCCcHHHHHHHHhcCccc-ccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           26 LGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        26 vG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      +|.+|+|||||++.+....+. ++.||++.+..  .+.+++  ..+.+||++|+++++.+|+.||+++++++++++++..
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999977774 57888875543  344444  6888999999999999999999999999999999988


Q ss_pred             cccccccCC
Q 033893          101 DFYEVEIFW  109 (109)
Q Consensus       101 ~~~~~~~~w  109 (109)
                      .+++....|
T Consensus        81 ~S~~~i~~w   89 (200)
T smart00176       81 VTYKNVPNW   89 (200)
T ss_pred             HHHHHHHHH
Confidence            887765555

Ran is involved in the active transport of proteins through nuclear pores.

>cd04112 Rab26 Rab26 subfamily

Probab=99.52  E-value=6.9e-14  Score=95.17  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=69.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +|+++|+.|||||||++.+.+.++.  +..||.+.+.  ..+.+++  ..+.+||.+|+++++..+..+++++++++.++
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   81 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLY   81 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEE
Confidence            6899999999999999999987763  4567765443  2356665  57789999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      |.+...+++..
T Consensus        82 D~~~~~s~~~~   92 (191)
T cd04112          82 DITNKASFDNI   92 (191)
T ss_pred             ECCCHHHHHHH
Confidence            99877666543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.51  E-value=6.4e-14  Score=97.13  Aligned_cols=89  Identities=24%  Similarity=0.429  Sum_probs=71.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEE-CC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSI-GK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~-~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      -+|+++|++|+|||||++.+.+.++. ...||.+.+.  ..+.+ ++  +.+.+||++|++++..++..|++++++++++
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv   82 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV   82 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence            57899999999999999999988774 4556765432  34444 23  6788999999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      +|++...+++....|
T Consensus        83 ~D~~~~~Sf~~l~~~   97 (211)
T cd04111          83 FDITNRESFEHVHDW   97 (211)
T ss_pred             EECCCHHHHHHHHHH
Confidence            999887776654433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.51  E-value=8e-14  Score=91.47  Aligned_cols=85  Identities=24%  Similarity=0.439  Sum_probs=69.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|||||||++.+.+.++ ....|+.+.+  ...+.+++  ..+.+||.+|++++...++.+++++++++.+++
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d   81 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYD   81 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEE
Confidence            689999999999999999998776 3455655533  34566666  578899999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      .+...+++..
T Consensus        82 ~~~~~s~~~~   91 (164)
T smart00175       82 ITNRESFENL   91 (164)
T ss_pred             CCCHHHHHHH
Confidence            8877666543

Rab GTPases are implicated in vesicle trafficking.

>PLN03118 Rab family protein; Provisional

Probab=99.51  E-value=8.5e-14  Score=96.11  Aligned_cols=86  Identities=23%  Similarity=0.393  Sum_probs=71.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ..+|+++|.+|+|||||++++.+..+....|+.+.+  ...+.+++  +.+.+||++|+++++.++..|++++++++.++
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~   93 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVY   93 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            357899999999999999999988777777776643  34556665  57789999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      |.+...+++.
T Consensus        94 D~~~~~sf~~  103 (211)
T PLN03118         94 DVTRRETFTN  103 (211)
T ss_pred             ECCCHHHHHH
Confidence            9987665554

>cd04140 ARHI_like ARHI subfamily

Probab=99.51  E-value=8.8e-14  Score=92.23  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|.+|+|||||++.+.+..+ .+..|+.+... ..+..++  ..+.+||++|+++++.+++.+++.+++++++++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            4689999999999999999998877 45667665322 2233333  677899999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      ++...+++.
T Consensus        82 ~~~~~s~~~   90 (165)
T cd04140          82 VTSKQSLEE   90 (165)
T ss_pred             CCCHHHHHH
Confidence            987776654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04177 RSR1 RSR1 subgroup

Probab=99.51  E-value=1.1e-13  Score=92.06  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+++++|.+|||||||++.+.+..+ .++.|+.+.. ...+.+++  ..+.+||.+|+++++.+++.+++++++++++++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            4689999999999999999998776 4566666532 34455665  577899999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus        82 ~~~~~s~~~   90 (168)
T cd04177          82 VTSEASLNE   90 (168)
T ss_pred             CCCHHHHHH
Confidence            877665554

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.51  E-value=1.3e-13  Score=90.60  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=69.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ..+++++|++|+|||||++.+.+..+ .+..|+.... ...+.+++  ..+.+||++|+++++.+++.|++++++++.++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            35799999999999999999987765 4556665532 33445666  46778999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      +.+...+++..
T Consensus        82 d~~~~~s~~~~   92 (164)
T cd04145          82 SVTDRGSFEEV   92 (164)
T ss_pred             ECCCHHHHHHH
Confidence            98876655543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.51  E-value=1.1e-14  Score=101.45  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .+|+++++++++|++ +|+||||||||||||||.+.        ..++.|+|.++|..+..-.     ..+    ...  
T Consensus        16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L--------E~~~~G~I~i~g~~~~~~~-----~~~----~~R--   76 (240)
T COG1126          16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL--------EEPDSGSITVDGEDVGDKK-----DIL----KLR--   76 (240)
T ss_pred             EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC--------cCCCCceEEECCEeccchh-----hHH----HHH--
Confidence            478999999999997 99999999999999999999        8899999999997664111     111    111  


Q ss_pred             CCEEEEEEeCCCccccccc
Q 033893           88 VIGSFKTKKIEFRDFYEVE  106 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~~~  106 (109)
                      ...-++++.+++|+|+++.
T Consensus        77 ~~vGmVFQ~fnLFPHlTvl   95 (240)
T COG1126          77 RKVGMVFQQFNLFPHLTVL   95 (240)
T ss_pred             HhcCeecccccccccchHH
Confidence            2344566777888888763

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.51  E-value=8e-14  Score=99.07  Aligned_cols=85  Identities=18%  Similarity=0.179  Sum_probs=70.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|..|+|||||++.+.+.++. .+.||.. +....+.+++  +.+.+||++|++.++.+++.|+.+++++++++++
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv   81 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSL   81 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeC
Confidence            6899999999999999999877774 5678775 3345567776  6778999999999988888899999999999999


Q ss_pred             CCccccccc
Q 033893           98 EFRDFYEVE  106 (109)
Q Consensus        98 ~~~~~~~~~  106 (109)
                      +...+++..
T Consensus        82 ~~~~Sf~~i   90 (247)
T cd04143          82 DNRESFEEV   90 (247)
T ss_pred             CCHHHHHHH
Confidence            887776543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04113 Rab4 Rab4 subfamily

Probab=99.51  E-value=1e-13  Score=91.21  Aligned_cols=85  Identities=26%  Similarity=0.452  Sum_probs=68.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +++++|++|+|||||++.+.+.++ ....|+.+.+  .-.+.+++  ..+.+||.+|+++++..++.+++++++++.+++
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d   81 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD   81 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEE
Confidence            689999999999999999998776 3455555433  23455555  577899999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      .+...+++..
T Consensus        82 ~~~~~s~~~~   91 (161)
T cd04113          82 ITNRTSFEAL   91 (161)
T ss_pred             CCCHHHHHHH
Confidence            9887666543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.50  E-value=7.2e-14  Score=94.23  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|+|||||++.+.+..+ .++.||...+ ...+... +  ..+.+||++|++++..+++.+++++++++++++
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d   81 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYA   81 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEE
Confidence            689999999999999999998877 4567776543 2345554 3  578899999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus        82 ~~~~~s~~~   90 (187)
T cd04132          82 VDNPTSLDN   90 (187)
T ss_pred             CCCHHHHHH
Confidence            987776654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.50  E-value=1.2e-13  Score=91.90  Aligned_cols=88  Identities=24%  Similarity=0.377  Sum_probs=69.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++.+.+.++. ...|+.+.+  ...+..++  ..+.+||.+|+++++.++..+++++++++.++
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~   84 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   84 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            47899999999999999999987763 344555433  33455555  57889999999999999999999999999999


Q ss_pred             eCCCccccccccC
Q 033893           96 KIEFRDFYEVEIF  108 (109)
Q Consensus        96 ~~~~~~~~~~~~~  108 (109)
                      |.+...+++....
T Consensus        85 d~~~~~s~~~~~~   97 (168)
T cd01866          85 DITRRETFNHLTS   97 (168)
T ss_pred             ECCCHHHHHHHHH
Confidence            9987666655433

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01862 Rab7 Rab7 subfamily

Probab=99.50  E-value=1.3e-13  Score=91.21  Aligned_cols=84  Identities=17%  Similarity=0.322  Sum_probs=66.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|||||||++++.+.++. ...|+.+.+  ...+.+++  ..+.+||.+|++.+..+|..+++++++++.+++
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   81 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   81 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999987653 444555433  34566666  456689999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .....+++.
T Consensus        82 ~~~~~~~~~   90 (172)
T cd01862          82 VTNPKSFES   90 (172)
T ss_pred             CCCHHHHHH
Confidence            876655443

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.50  E-value=1e-13  Score=91.34  Aligned_cols=85  Identities=14%  Similarity=0.204  Sum_probs=67.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC--cc-cccCCcccCceE--EEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE--RL-VQHQPTQHPTSE--ELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~--~~-~~~~pt~~~~~g--~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +|+++|.+|||||||++.+...  .+ .++.||.+++..  .+.++   ...+.+||.+|+++++.+++.++.++++++.
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFIL   81 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            6899999999999999999854  45 456677665432  33332   3788899999999999999999999999999


Q ss_pred             EEeCCCccccccc
Q 033893           94 TKKIEFRDFYEVE  106 (109)
Q Consensus        94 ~~~~~~~~~~~~~  106 (109)
                      +++.+...+++..
T Consensus        82 v~d~~~~~s~~~~   94 (164)
T cd04101          82 VYDVSNKASFENC   94 (164)
T ss_pred             EEECcCHHHHHHH
Confidence            9999877665543

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.50  E-value=2e-13  Score=90.84  Aligned_cols=84  Identities=19%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|++|||||||++.+.+.++ ..+.||.... ...+.+++  ..+.+||++|+++++.+++.++.++++++.+++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            4789999999999999999998877 4577777643 35667766  467899999999999998889999999999999


Q ss_pred             CCCccccc
Q 033893           97 IEFRDFYE  104 (109)
Q Consensus        97 ~~~~~~~~  104 (109)
                      ++...+++
T Consensus        82 ~~~~~s~~   89 (175)
T cd01870          82 IDSPDSLE   89 (175)
T ss_pred             CCCHHHHH
Confidence            87665543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.49  E-value=3.5e-14  Score=93.82  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=75.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +.+|+|.+|+|||+|+..+...-| .+++.|++.  ...++.++|  +++.+||.+|++++|.+...||+..++++++||
T Consensus        10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYD   89 (198)
T KOG0079|consen   10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD   89 (198)
T ss_pred             HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEE
Confidence            357999999999999999998766 467777764  456777776  678899999999999999999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++.-.++....+|
T Consensus        90 VTn~ESF~Nv~rW  102 (198)
T KOG0079|consen   90 VTNGESFNNVKRW  102 (198)
T ss_pred             CcchhhhHhHHHH
Confidence            9998888776666

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.49  E-value=9.4e-15  Score=104.26  Aligned_cols=61  Identities=28%  Similarity=0.421  Sum_probs=52.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV   80 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~   80 (109)
                      ++++++|++++|++ +|+|||||||||||++++|.        ..|..|+|.++|.++.  +++..+..+.+
T Consensus        17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--------l~p~~G~V~l~g~~i~--~~~~kelAk~i   78 (258)
T COG1120          17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL--------LKPKSGEVLLDGKDIA--SLSPKELAKKL   78 (258)
T ss_pred             EEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc--------CCCCCCEEEECCCchh--hcCHHHHhhhE
Confidence            67899999999997 99999999999999999998        8899999999999887  55555544443

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.48  E-value=7.3e-14  Score=96.21  Aligned_cols=85  Identities=27%  Similarity=0.357  Sum_probs=66.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc-eE-EEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT-SE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~-~g-~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|+.|||||||++.+.+..+. ...||.... .+ .+...  ...+.+||++|+++++.+|+.|+.++++++.++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            57899999999999999999988774 455665422 22 22222  467889999999999999999999999999999


Q ss_pred             eCCCcc-cccc
Q 033893           96 KIEFRD-FYEV  105 (109)
Q Consensus        96 ~~~~~~-~~~~  105 (109)
                      +.+.+. +.+.
T Consensus        86 d~~~~~~~~~~   96 (219)
T COG1100          86 DSTLRESSDEL   96 (219)
T ss_pred             ecccchhhhHH
Confidence            987743 4443

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.48  E-value=3.7e-14  Score=94.97  Aligned_cols=91  Identities=22%  Similarity=0.435  Sum_probs=76.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCce--EEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTS--EELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~~--g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      -+.+++++|.+-+|||+||+.++..++++ .-||++.+.  .-|.+. |  +++.+||.+||+++|++.+.||+|.-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            35678999999999999999999888854 668887442  233332 3  67889999999999999999999999999


Q ss_pred             EEEeCCCccccccccCC
Q 033893           93 KTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        93 ~~~~~~~~~~~~~~~~w  109 (109)
                      .++|++.+.++++..-|
T Consensus        87 lvyditnr~sfehv~~w  103 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENW  103 (213)
T ss_pred             EEEeccchhhHHHHHHH
Confidence            99999999999987655

>cd00154 Rab Rab family

Probab=99.47  E-value=1.7e-13  Score=88.52  Aligned_cols=84  Identities=25%  Similarity=0.399  Sum_probs=67.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCceEE--EEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTSEE--LSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~~g~--i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|||||||++.+.+..+.. ..||.+.+...  +..+  +..+.+||.+|++..+..+..+++++++++.+++
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d   81 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYD   81 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999999887643 46666654433  3333  3778899999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus        82 ~~~~~~~~~   90 (159)
T cd00154          82 ITNRESFEN   90 (159)
T ss_pred             CCCHHHHHH
Confidence            877655443

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04114 Rab30 Rab30 subfamily

Probab=99.47  E-value=2.8e-13  Score=89.63  Aligned_cols=84  Identities=21%  Similarity=0.308  Sum_probs=66.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+++++|++|||||||++.+.+..+. ...|+.+  +....+.+++  ..+.+||.+|++.++..+..+++++++++.++
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   87 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTY   87 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence            56899999999999999999976553 3455554  3344667777  45778999999999999999999999999999


Q ss_pred             eCCCccccc
Q 033893           96 KIEFRDFYE  104 (109)
Q Consensus        96 ~~~~~~~~~  104 (109)
                      +.+..++++
T Consensus        88 d~~~~~s~~   96 (169)
T cd04114          88 DITCEESFR   96 (169)
T ss_pred             ECcCHHHHH
Confidence            987665544

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.47  E-value=2.1e-13  Score=91.16  Aligned_cols=84  Identities=14%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +++++|++|+|||||++.+.+..+ .++.||.. .....+.+++  +.+.+||.+|+++++.+++.+++++++++.+++.
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~   81 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSV   81 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEEC
Confidence            689999999999999999987666 45666642 1224566666  5677899999999999999999999999999999


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        82 ~~~~sf~~   89 (173)
T cd04130          82 VNPSSFQN   89 (173)
T ss_pred             CCHHHHHH
Confidence            88776654

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01863 Rab18 Rab18 subfamily

Probab=99.46  E-value=3.7e-13  Score=88.40  Aligned_cols=84  Identities=24%  Similarity=0.386  Sum_probs=67.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +++++|++|||||||++++.+..+. ...|+.+.+  ...+.+++  ..+.+||.+|++++...++.+++++++++++++
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   81 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYD   81 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEE
Confidence            6899999999999999999987763 466666543  34455555  678899999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus        82 ~~~~~s~~~   90 (161)
T cd01863          82 VTRRDTFTN   90 (161)
T ss_pred             CCCHHHHHh
Confidence            877665544

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.46  E-value=2.1e-13  Score=90.66  Aligned_cols=83  Identities=17%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      |+++|++|+|||||++.+.+..+ ..+.|+.... ...+.+++  +.+.+||++|+++++.+++.++.++++++.+++.+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            47999999999999999998877 4456665432 23566666  46789999999999999999999999999999998


Q ss_pred             Ccccccc
Q 033893           99 FRDFYEV  105 (109)
Q Consensus        99 ~~~~~~~  105 (109)
                      ...+++.
T Consensus        81 ~~~s~~~   87 (174)
T smart00174       81 SPASFEN   87 (174)
T ss_pred             CHHHHHH
Confidence            7766654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.45  E-value=3.2e-13  Score=92.41  Aligned_cols=84  Identities=15%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|.+|+|||||++.+.+..+. .+.|+.. .....+.+++  ..+.+||++|+..++.+++.|+.++++++++++.
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            5799999999999999999987764 3455543 3345667777  5788999999999999999999999999999998


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        81 ~~~~s~~~   88 (198)
T cd04147          81 DDPESFEE   88 (198)
T ss_pred             CCHHHHHH
Confidence            77655553

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.45  E-value=7.4e-14  Score=98.01  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=60.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .+|+++++++++|++ +|+|||||||||||+++.+.        ..|+.|.+.++|.++.  .+...+      ..-++.
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l--------d~pt~G~v~i~g~d~~--~l~~~~------~~~~R~   82 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL--------DKPTSGEVLINGKDLT--KLSEKE------LAKLRR   82 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCceEEECCEEcC--cCCHHH------HHHHHH
Confidence            578999999999996 99999999999999999999        7889999999998776  332222      123344


Q ss_pred             CCEEEEEEeCCCcccccc
Q 033893           88 VIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~~  105 (109)
                      -+.-++++++.+-+.+++
T Consensus        83 ~~iGfvFQ~~nLl~~ltv  100 (226)
T COG1136          83 KKIGFVFQNFNLLPDLTV  100 (226)
T ss_pred             HhEEEECccCCCCCCCCH
Confidence            455555555555554443

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.44  E-value=1.5e-13  Score=93.36  Aligned_cols=89  Identities=17%  Similarity=0.294  Sum_probs=75.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+|+|.+|.|||+|++.+...+|. .+--|++  |-.-++.+++  ..+.+||++||++++++--.||+.+|+.+.++
T Consensus        10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvy   89 (210)
T KOG0394|consen   10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   89 (210)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEe
Confidence            36899999999999999999977763 4545565  4557888887  56779999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +++..++++....|
T Consensus        90 dv~~~~Sfe~L~~W  103 (210)
T KOG0394|consen   90 DVNNPKSFENLENW  103 (210)
T ss_pred             ecCChhhhccHHHH
Confidence            99999888876655

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.44  E-value=6.2e-13  Score=89.06  Aligned_cols=85  Identities=21%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC-ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~-~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+|+|++|+|||||++.+.+.++. ...|+... ....+.+++  ..+.+||++|+++++.+|..++..+++++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            47899999999999999999987763 46676543 245566665  456789999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus        82 ~~~~~~~~~   90 (180)
T cd04137          82 VTSRKSFEV   90 (180)
T ss_pred             CCCHHHHHH
Confidence            887665443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04123 Rab21 Rab21 subfamily

Probab=99.43  E-value=7.1e-13  Score=86.53  Aligned_cols=84  Identities=23%  Similarity=0.402  Sum_probs=66.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +++++|++|+|||||++.+.+..+. ...|+....  ...+...+  ..+.+||.+|++.++.+++.++.++++++.+++
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD   81 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence            6899999999999999999987763 344444332  34455544  468899999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus        82 ~~~~~s~~~   90 (162)
T cd04123          82 ITDADSFQK   90 (162)
T ss_pred             CCCHHHHHH
Confidence            877765543

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04135 Tc10 TC10 subfamily

Probab=99.42  E-value=1.4e-12  Score=86.71  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|++|+|||||++.+.+.++ ..+.|+.... .-.+.+++  +.+.+||.+|++.++..++.+++.+++++.+++.
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~   81 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSV   81 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEEC
Confidence            689999999999999999998876 4566765422 23566666  4567899999999999999999999999999998


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        82 ~~~~s~~~   89 (174)
T cd04135          82 VNPASFQN   89 (174)
T ss_pred             CCHHHHHH
Confidence            77765543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.41  E-value=1e-12  Score=86.91  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECCE--EEEEEEcCCccc-ccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGKI--KFKAFDLGGHQI-ARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~~--~i~~~d~~g~~~-~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|++|+|||||++.+....+ .++.|+.. .....+.+++.  .+.+||.+|+++ ....+..++++++++++++|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            479999999999999999887666 34556553 22345566664  577999999885 35567889999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      .+...+++...
T Consensus        81 ~~~~~s~~~~~   91 (165)
T cd04146          81 ITDRSSFDEIS   91 (165)
T ss_pred             CCCHHHHHHHH
Confidence            98877766443

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.41  E-value=2.7e-13  Score=85.26  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=61.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc---ccCCcccCce--EEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV---QHQPTQHPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~---~~~pt~~~~~--g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ||+++|+.|||||||++.+.+....   ...++.+...  ......  ...+.+||.+|++.....++.++.++++++++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            6899999999999999999987654   1222222222  123333  34678999999998888888889999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      +|.+...+++.
T Consensus        81 ~D~s~~~s~~~   91 (119)
T PF08477_consen   81 YDLSDPESLEY   91 (119)
T ss_dssp             EECCGHHHHHH
T ss_pred             EcCCChHHHHH
Confidence            99987776654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=7e-13  Score=87.30  Aligned_cols=88  Identities=24%  Similarity=0.409  Sum_probs=73.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEE--EEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEE--LSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~--i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +.+|+|.-|+|||.||+.+...+| .++.-|++...|+  |.+.|  +++.+||.+|++++|.+.+.||+.+.+.+.+++
T Consensus        13 kyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyd   92 (215)
T KOG0097|consen   13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   92 (215)
T ss_pred             EEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEE
Confidence            458999999999999999998876 5666667654443  55556  567799999999999999999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++.+..+.+...|
T Consensus        93 itrrstynhlssw  105 (215)
T KOG0097|consen   93 ITRRSTYNHLSSW  105 (215)
T ss_pred             ehhhhhhhhHHHH
Confidence            9988877766555

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.40  E-value=1.2e-12  Score=90.44  Aligned_cols=79  Identities=20%  Similarity=0.277  Sum_probs=65.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC----CEEEEEEEcCCcccccccHHhhhhcC-CEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKV-IGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~-~~~v~~~~   96 (109)
                      .|+|+|++|||||+|++.+...++..+.|+..++.......    +..+.+||.+|+++++..+..|++++ +++|.+.|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            57999999999999999999887755555555555655553    57889999999999999999999998 99999998


Q ss_pred             CCCc
Q 033893           97 IEFR  100 (109)
Q Consensus        97 ~~~~  100 (109)
                      .+..
T Consensus        82 ~~~~   85 (203)
T cd04105          82 SATF   85 (203)
T ss_pred             Cccc
Confidence            8665

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.40  E-value=2.4e-13  Score=95.94  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=60.5

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .++++|+|++.+|++ +|+|+||||||||.+++.|.        ..++.|+|.++|..+.     ...+.    +.+++.
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl--------~~p~~G~I~~~G~~~~-----~~~~~----~~~~~~   83 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL--------EKPSSGSILLDGKPLA-----PKKRA----KAFYRP   83 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--------cCCCCceEEECCcccC-----ccccc----hhhccc
Confidence            689999999999997 99999999999999999999        8889999999997654     11111    145556


Q ss_pred             CCEEEEEEeCCCccccc
Q 033893           88 VIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~  104 (109)
                      +..+.+.+.-++.|+.+
T Consensus        84 VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          84 VQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             eeEEecCCccccCcchh
Confidence            66666655555555443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=2.7e-13  Score=95.92  Aligned_cols=52  Identities=25%  Similarity=0.409  Sum_probs=47.3

Q ss_pred             HHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            8 YGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         8 ~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ..+|+++++++.+|++ +|+|+||||||||||.++|.        ..++.|+|.++|..+.
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL--------~~p~~G~V~~~g~~v~   68 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL--------EKPTSGEVLLDGRPVT   68 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCcccC
Confidence            3578999999999996 99999999999999999999        8899999999988763

>cd04129 Rho2 Rho2 subfamily

Probab=99.39  E-value=1.8e-12  Score=87.92  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+++++|++|+|||||++++....+ .+..|+.... ...+.+++  ..+.+||.+|++.++...+.+++++++++.+++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            4789999999999999999986655 3455655432 34556665  457789999998888877788899999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      ++...+++..
T Consensus        82 i~~~~s~~~~   91 (187)
T cd04129          82 VDTPDSLENV   91 (187)
T ss_pred             CCCHHHHHHH
Confidence            9877666543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.38  E-value=8.9e-14  Score=96.86  Aligned_cols=55  Identities=27%  Similarity=0.474  Sum_probs=50.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL   71 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~   71 (109)
                      .+|++++++.++|++ +|+|||||||||||+.|+|.        ..|+.|++.++|..+..|..
T Consensus        15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe--------l~p~~G~v~~~g~~l~~~~~   70 (259)
T COG4559          15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--------LSPDSGEVTLNGVPLNSWPP   70 (259)
T ss_pred             eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc--------cCCCCCeEeeCCcChhhCCH
Confidence            367899999999998 99999999999999999999        88999999999999987753

>cd00876 Ras Ras family

Probab=99.38  E-value=2e-12  Score=84.25  Aligned_cols=84  Identities=17%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|++|||||||++++.+..+ ....|+.. .....+..++  ..+.+||.+|.+.+...+..+++.+++++.+++.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            479999999999999999997765 34555544 2234455563  6788999999999999999999999999999998


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        81 ~~~~s~~~   88 (160)
T cd00876          81 TDRESFEE   88 (160)
T ss_pred             CCHHHHHH
Confidence            77655443

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.38  E-value=5.7e-13  Score=96.86  Aligned_cols=51  Identities=25%  Similarity=0.419  Sum_probs=46.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+++++++.++.+++ +++|||||||||||++|+|.        ..|+.|.|.+++..+.
T Consensus        16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL--------e~p~~G~I~~~~~~l~   67 (345)
T COG1118          16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL--------ETPDAGRIRLNGRVLF   67 (345)
T ss_pred             cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc--------CCCCCceEEECCEecc
Confidence            457789999999996 99999999999999999999        8899999999998443

>cd01893 Miro1 Miro1 subfamily

Probab=99.37  E-value=1.9e-12  Score=85.91  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCce-EEEEE--CCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~-g~i~~--~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +++++|.+|||||||++.+.+.++....|+..... -.+.+  .+..+.+||++|.+..+..+..++..+++++++++.+
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~   81 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD   81 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC
Confidence            68999999999999999999887754444332221 11223  3478889999999988888888899999999999988


Q ss_pred             Ccccccc
Q 033893           99 FRDFYEV  105 (109)
Q Consensus        99 ~~~~~~~  105 (109)
                      ...+++.
T Consensus        82 ~~~s~~~   88 (166)
T cd01893          82 RPSTLER   88 (166)
T ss_pred             CHHHHHH
Confidence            7666654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.5e-13  Score=94.01  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=54.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR   79 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~   79 (109)
                      .+|+.++++++++++ +|+||||||||||.+.|+|.      |......|+|.++|.++.  ++...++.|.
T Consensus        18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~------p~Y~Vt~G~I~~~GedI~--~l~~~ERAr~   81 (251)
T COG0396          18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH------PKYEVTEGEILFDGEDIL--ELSPDERARA   81 (251)
T ss_pred             hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC------CCceEecceEEECCcccc--cCCHhHHHhc
Confidence            588999999999999 99999999999999999998      334567899999999888  7766666554

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.36  E-value=3.7e-12  Score=83.35  Aligned_cols=83  Identities=14%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|++|||||||++.+....+ ....|+..... ..+.+++  ..+.+||.+|++.+...+..+++.+++++.++++
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   81 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSI   81 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEEC
Confidence            689999999999999999998776 34555554322 3345554  5788899999999999999999999999999998


Q ss_pred             CCccccc
Q 033893           98 EFRDFYE  104 (109)
Q Consensus        98 ~~~~~~~  104 (109)
                      +...+++
T Consensus        82 ~~~~s~~   88 (164)
T cd04139          82 TDMESFT   88 (164)
T ss_pred             CCHHHHH
Confidence            7665543

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.35  E-value=5.4e-14  Score=99.13  Aligned_cols=51  Identities=22%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|||||||||++|+++|.        ..|+.|+|.++|.++.
T Consensus        18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~--------~~P~~G~v~~~G~~it   69 (250)
T COG0411          18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF--------YKPSSGTVIFRGRDIT   69 (250)
T ss_pred             EEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc--------ccCCCceEEECCcccC
Confidence            368899999999998 99999999999999999999        8999999999999777

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.34  E-value=3.1e-13  Score=96.32  Aligned_cols=72  Identities=28%  Similarity=0.460  Sum_probs=56.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .++++++++++++++ +++|+|||||||+|++|.+.        +.++.|+|.++|.++.-+|  ..+.-|.+  .|.-+
T Consensus        15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--------iept~G~I~i~g~~i~~~d--~~~LRr~I--GYviQ   82 (309)
T COG1125          15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--------IEPTSGEILIDGEDISDLD--PVELRRKI--GYVIQ   82 (309)
T ss_pred             eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--------cCCCCceEEECCeecccCC--HHHHHHhh--hhhhh
Confidence            468899999999997 99999999999999999999        9999999999999988444  33322332  45544


Q ss_pred             CCEEE
Q 033893           88 VIGSF   92 (109)
Q Consensus        88 ~~~~v   92 (109)
                      -.+++
T Consensus        83 qigLF   87 (309)
T COG1125          83 QIGLF   87 (309)
T ss_pred             hcccC
Confidence            44433

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.34  E-value=9.2e-13  Score=89.68  Aligned_cols=51  Identities=27%  Similarity=0.401  Sum_probs=46.0

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++++++++++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   57 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL--------LRPQSGAVLIDGEPLD   57 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceeEEECCEEcc
Confidence            368999999999986 99999999999999999998        7788999999987663

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.34  E-value=7.5e-13  Score=91.65  Aligned_cols=53  Identities=28%  Similarity=0.352  Sum_probs=48.6

Q ss_pred             HHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            7 FYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         7 ~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .-+++++++|+.++|+| +++|+|||||||+|+.|++.        ..|+.|.+.+++++..
T Consensus        14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl--------L~P~~G~v~idg~d~~   67 (245)
T COG4555          14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--------LIPDSGKVTIDGVDTV   67 (245)
T ss_pred             HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh--------ccCCCceEEEeecccc
Confidence            34689999999999998 99999999999999999999        8999999999987665

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.34  E-value=7.6e-13  Score=96.18  Aligned_cols=51  Identities=31%  Similarity=0.363  Sum_probs=46.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++++|++ +++|+|||||||++++|+|.        ..++.|+|.++|.+..
T Consensus        19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl--------~~p~~G~i~i~G~~~~   70 (293)
T COG1131          19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL--------LKPTSGEILVLGYDVV   70 (293)
T ss_pred             EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEEcCEeCc
Confidence            378999999999997 99999999999999999999        8889999999987654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.1e-12  Score=100.76  Aligned_cols=54  Identities=26%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      .+|++++|++.+|+| +|+|+||||||||+|.|+|.        ..|+.|+|.++|..+...+
T Consensus        22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--------~~p~~G~I~~~G~~~~~~s   76 (500)
T COG1129          22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV--------YPPDSGEILIDGKPVAFSS   76 (500)
T ss_pred             eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc--------ccCCCceEEECCEEccCCC
Confidence            579999999999998 99999999999999999999        8899999999998877543

>cd01898 Obg Obg subfamily

Probab=99.33  E-value=6.5e-12  Score=83.00  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc--c-cCCcccCceEEEEECCE-EEEEEEcCCcc----cccccHHhhhh---cCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQHPTSEELSIGKI-KFKAFDLGGHQ----IARRVWKDYYA---KVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~--~-~~pt~~~~~g~i~~~~~-~i~~~d~~g~~----~~r~~~~~~~~---~~~~   90 (109)
                      .|+++|.+|||||||+++|.+.+..  . ..+|..+..+.+.+++. .+.+||++|..    ..+.+...|++   ++++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            5899999999999999999976531  1 22345566777877776 99999999963    22334445544   5999


Q ss_pred             EEEEEeCCCc
Q 033893           91 SFKTKKIEFR  100 (109)
Q Consensus        91 ~v~~~~~~~~  100 (109)
                      ++.++|.+..
T Consensus        82 vi~v~D~~~~   91 (170)
T cd01898          82 LLHVIDLSGD   91 (170)
T ss_pred             EEEEEecCCC
Confidence            9999998765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.33  E-value=6e-13  Score=93.24  Aligned_cols=51  Identities=27%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++|+++++++++++| +++|+|||||||++++|+|.        ..+..|+|.++|.++.
T Consensus        17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--------~~~~~G~I~~~G~dit   68 (237)
T COG0410          17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--------VRPRSGRIIFDGEDIT   68 (237)
T ss_pred             eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeeEEECCeecC
Confidence            578999999999997 99999999999999999999        8888899999999887

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.33  E-value=1.7e-11  Score=78.53  Aligned_cols=80  Identities=26%  Similarity=0.382  Sum_probs=64.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|||||||++.+.+.++ .+..|+.+.+.  ..+..++  +.+.+||.+|+.+.+..|..++++++..+.+.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            4789999999999999999998774 34445554333  3467777  77889999999999999999999999999888


Q ss_pred             eCCCc
Q 033893           96 KIEFR  100 (109)
Q Consensus        96 ~~~~~  100 (109)
                      ++...
T Consensus        82 d~~~~   86 (161)
T TIGR00231        82 DIVIL   86 (161)
T ss_pred             EEeee
Confidence            87544

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04142 RRP22 RRP22 subfamily

Probab=99.32  E-value=8.9e-12  Score=85.73  Aligned_cols=85  Identities=14%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccc----ccc----HHhhhhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIA----RRV----WKDYYAKV   88 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~----r~~----~~~~~~~~   88 (109)
                      +|+++|.+|+|||||++.+.+.++. .+.||.+.+  ...+.+++  +.+.+||++|.+++    ...    ...+++++
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a   81 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS   81 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence            6899999999999999999988774 567776533  24567777  56779999886532    111    23457899


Q ss_pred             CEEEEEEeCCCccccccc
Q 033893           89 IGSFKTKKIEFRDFYEVE  106 (109)
Q Consensus        89 ~~~v~~~~~~~~~~~~~~  106 (109)
                      |++++++|.+...+++..
T Consensus        82 d~iilv~D~~~~~S~~~~   99 (198)
T cd04142          82 RAFILVYDICSPDSFHYV   99 (198)
T ss_pred             CEEEEEEECCCHHHHHHH
Confidence            999999999887776654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.32  E-value=1.1e-12  Score=90.81  Aligned_cols=51  Identities=25%  Similarity=0.414  Sum_probs=45.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~   69 (218)
T cd03255          18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL--------DRPTSGEVRVDGTDIS   69 (218)
T ss_pred             eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC--------cCCCceeEEECCEehh
Confidence            368899999999986 99999999999999999998        7788999999987654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.32  E-value=1.7e-12  Score=89.76  Aligned_cols=50  Identities=30%  Similarity=0.424  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++.
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~   65 (213)
T cd03259          15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL--------ERPDSGEILIDGRDVT   65 (213)
T ss_pred             eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEcC
Confidence            68899999999986 99999999999999999998        7788999999987654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=5.4e-13  Score=97.02  Aligned_cols=57  Identities=25%  Similarity=0.338  Sum_probs=50.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGG   73 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g   73 (109)
                      .+|+++++++++|+| +|+|.||||||||+|++.+.        ..|+.|+|.++|.++...+-.+
T Consensus        20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L--------e~PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135          20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL--------ERPTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc--------CCCCCceEEEcCEecccCChHH
Confidence            478999999999998 99999999999999999999        8899999999999888544333

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.31  E-value=1.4e-12  Score=89.89  Aligned_cols=50  Identities=30%  Similarity=0.460  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   66 (211)
T cd03225          16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--------LGPTSGEVLVDGKDLT   66 (211)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEcc
Confidence            68899999999986 99999999999999999998        7788999999987664

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.31  E-value=1.3e-12  Score=91.57  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~   65 (235)
T cd03261          15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--------LRPDSGEVLIDGEDIS   65 (235)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999998        7788999999987654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04148 RGK RGK subfamily

Probab=99.31  E-value=1.2e-11  Score=86.43  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=62.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhh-cCCEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYA-KVIGSFKT   94 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~-~~~~~v~~   94 (109)
                      +|+++|.+|+|||||++.+.+..+  ..+.|+.+  +...++.+++  ..+.+||++|++  ..+...++. ++++++++
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV   79 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVV   79 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEE
Confidence            689999999999999999976665  45566653  3345666654  678899999988  233345566 89999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      ++.+...+++..
T Consensus        80 ~d~td~~S~~~~   91 (221)
T cd04148          80 YSVTDRSSFERA   91 (221)
T ss_pred             EECCCHHHHHHH
Confidence            999887766643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.31  E-value=1.5e-12  Score=89.62  Aligned_cols=50  Identities=28%  Similarity=0.306  Sum_probs=45.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~   64 (205)
T cd03226          14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--------IKESSGSILLNGKPI   64 (205)
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEh
Confidence            368899999999986 99999999999999999998        778899999998765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=1.7e-12  Score=91.37  Aligned_cols=51  Identities=27%  Similarity=0.413  Sum_probs=46.5

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++|++.+++|+. +|+|+||||||||||++.+.        ..++.|+|.+++.++.
T Consensus        18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl--------~d~t~G~i~~~g~~i~   69 (258)
T COG3638          18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL--------VDPTSGEILFNGVQIT   69 (258)
T ss_pred             eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc--------cCCCcceEEecccchh
Confidence            368899999999995 99999999999999999998        8888999999998665

>cd00157 Rho Rho (Ras homology) family

Probab=99.31  E-value=2.2e-11  Score=80.42  Aligned_cols=83  Identities=18%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +|+++|++|||||||++++.+..+ ....|+..... ..+..++  ..+.+||.+|++++....+.+++++++++.+++.
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   81 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSV   81 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEEC
Confidence            689999999999999999998876 45556554222 2333343  5788999999998888888888999999999998


Q ss_pred             CCccccc
Q 033893           98 EFRDFYE  104 (109)
Q Consensus        98 ~~~~~~~  104 (109)
                      +...++.
T Consensus        82 ~~~~s~~   88 (171)
T cd00157          82 DSPSSFE   88 (171)
T ss_pred             CCHHHHH
Confidence            7655443

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.31  E-value=1.9e-12  Score=89.43  Aligned_cols=51  Identities=25%  Similarity=0.417  Sum_probs=45.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~   67 (214)
T TIGR02673        16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA--------LTPSRGQVRIAGEDVN   67 (214)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence            368999999999986 99999999999999999998        7778899999987664

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.30  E-value=2.1e-12  Score=89.61  Aligned_cols=51  Identities=35%  Similarity=0.412  Sum_probs=45.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+++++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   67 (220)
T cd03263          16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE--------LRPTSGTAYINGYSIR   67 (220)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence            378999999999986 99999999999999999998        7788999999987654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.30  E-value=1.7e-12  Score=89.93  Aligned_cols=50  Identities=20%  Similarity=0.430  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   68 (216)
T TIGR00960        18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI--------EKPTRGKIRFNGQDLT   68 (216)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEehh
Confidence            68899999999986 99999999999999999998        7788899999987664

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=1.5e-12  Score=91.87  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=48.4

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL   71 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~   71 (109)
                      .+|++++|++.+|+ ++|+|.||||||||++.|+|.        ..|+.|++.++|.-..+.++
T Consensus        41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi--------~~Pt~G~v~v~G~v~~li~l   96 (249)
T COG1134          41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--------YKPTSGKVKVTGKVAPLIEL   96 (249)
T ss_pred             EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc--------cCCCCceEEEcceEehhhhc
Confidence            46899999998887 699999999999999999999        89999999999876555544

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.29  E-value=3.4e-12  Score=97.28  Aligned_cols=53  Identities=26%  Similarity=0.368  Sum_probs=49.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      ++++|++.+++|+| +|+|+||||||||+++|.|.        ..|+.|+|.++|+.+.+.+
T Consensus        19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~--------~~P~~GeI~v~G~~v~~~s   72 (501)
T COG3845          19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL--------YQPDSGEIRVDGKEVRIKS   72 (501)
T ss_pred             ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc--------ccCCcceEEECCEEeccCC
Confidence            67899999999999 99999999999999999999        8999999999999887554

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.29  E-value=1.6e-12  Score=92.58  Aligned_cols=49  Identities=29%  Similarity=0.421  Sum_probs=44.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|.+++|++ +|+||||||||||++.+.|.        ..|..|+|.+.+..+
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl--------l~p~~G~i~~~g~~~   68 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL--------LKPSSGEIKIFGKPV   68 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CcCCcceEEEccccc
Confidence            78999999999997 99999999999999999998        888999999877643

>cd04171 SelB SelB subfamily

Probab=99.29  E-value=2.2e-11  Score=79.70  Aligned_cols=77  Identities=18%  Similarity=0.073  Sum_probs=58.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCc---cc-ccCC--cccCceEEEEEC-CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           23 ILFLGLDNAGKTTLLHMLKDER---LV-QHQP--TQHPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~~---~~-~~~p--t~~~~~g~i~~~-~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      |+++|.+|||||||++++.+.+   +. +..|  |.......+.++ +..+.+||++|++++......+++++|+++.++
T Consensus         3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~   82 (164)
T cd04171           3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVV   82 (164)
T ss_pred             EEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEE
Confidence            6899999999999999999743   21 1222  333444455665 788999999999988766677888999999999


Q ss_pred             eCCC
Q 033893           96 KIEF   99 (109)
Q Consensus        96 ~~~~   99 (109)
                      +.+.
T Consensus        83 d~~~   86 (164)
T cd04171          83 AADE   86 (164)
T ss_pred             ECCC
Confidence            9754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.29  E-value=2.5e-12  Score=89.51  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=46.0

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   70 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--------LKPTSGSIIFDGKDLL   70 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence            368999999999986 99999999999999999998        7788999999987654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.29  E-value=2.7e-12  Score=89.68  Aligned_cols=50  Identities=26%  Similarity=0.371  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|..+.
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   65 (232)
T cd03218          15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--------VKPDSGKILLDGQDIT   65 (232)
T ss_pred             eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence            68899999999986 99999999999999999998        7788899999987654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.29  E-value=2.6e-12  Score=89.29  Aligned_cols=50  Identities=26%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++.++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   65 (220)
T cd03265          15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--------LKPTSGRATVAGHDVV   65 (220)
T ss_pred             eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEecC
Confidence            67899999999986 99999999999999999998        7788999999887553

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.29  E-value=2.3e-12  Score=93.78  Aligned_cols=51  Identities=27%  Similarity=0.383  Sum_probs=46.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   58 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL--------LRPTSGTARVAGYDVV   58 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            368899999999987 99999999999999999998        7888999999987653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.28  E-value=2.7e-12  Score=90.22  Aligned_cols=51  Identities=22%  Similarity=0.340  Sum_probs=46.0

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   67 (243)
T TIGR02315        16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--------VEPSSGSILLEGTDIT   67 (243)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCccEEEECCEEhh
Confidence            378999999999986 99999999999999999998        7788899999987664

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=9.4e-12  Score=82.26  Aligned_cols=88  Identities=22%  Similarity=0.353  Sum_probs=73.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      ++.++|-+.+|||+++....+.-| ....+|.+  +..-+|....  +++.+||.+|++++|.+.-.||+++.+.+.+++
T Consensus        23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyD  102 (193)
T KOG0093|consen   23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD  102 (193)
T ss_pred             eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEe
Confidence            789999999999999999998876 45666666  3445666554  678899999999999999999999999999999


Q ss_pred             CCCccccccccCC
Q 033893           97 IEFRDFYEVEIFW  109 (109)
Q Consensus        97 ~~~~~~~~~~~~w  109 (109)
                      ++...++...+.|
T Consensus       103 itNeeSf~svqdw  115 (193)
T KOG0093|consen  103 ITNEESFNSVQDW  115 (193)
T ss_pred             cCCHHHHHHHHHH
Confidence            9888777655444

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.28  E-value=2.5e-12  Score=93.84  Aligned_cols=50  Identities=28%  Similarity=0.395  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl--------~~p~~G~v~i~G~~~~   72 (306)
T PRK13537         22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL--------THPDAGSISLCGEPVP   72 (306)
T ss_pred             EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEecc
Confidence            68899999999987 99999999999999999998        8888999999987654

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=2.5e-12  Score=90.10  Aligned_cols=50  Identities=26%  Similarity=0.442  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~i~   74 (233)
T PRK11629         24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--------DTPTSGDVIFNGQPMS   74 (233)
T ss_pred             eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcC
Confidence            68899999999986 99999999999999999998        7788999999998664

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.28  E-value=6.4e-13  Score=93.79  Aligned_cols=55  Identities=27%  Similarity=0.367  Sum_probs=49.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGH   74 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~   74 (109)
                      +++++++++++|++ +|+|+||+|||||+|.+.|+        ..|+.|+|.+.|.++.  .++..
T Consensus        23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl--------l~P~~GeI~i~G~~i~--~ls~~   78 (263)
T COG1127          23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL--------LRPDKGEILIDGEDIP--QLSEE   78 (263)
T ss_pred             EecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc--------CCCCCCeEEEcCcchh--ccCHH
Confidence            57899999999998 99999999999999999999        9999999999999866  44443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.28  E-value=2.6e-12  Score=89.29  Aligned_cols=49  Identities=27%  Similarity=0.426  Sum_probs=44.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~   68 (220)
T cd03293          19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--------ERPTSGEVLVDGEPV   68 (220)
T ss_pred             EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEC
Confidence            68899999999986 99999999999999999998        777889999988755

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.28  E-value=2.8e-12  Score=88.96  Aligned_cols=50  Identities=32%  Similarity=0.400  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   65 (222)
T cd03224          15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--------LPPRSGSIRFDGRDIT   65 (222)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcC
Confidence            67899999999986 99999999999999999998        7788899999987654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.28  E-value=1.5e-12  Score=83.92  Aligned_cols=49  Identities=29%  Similarity=0.376  Sum_probs=43.9

Q ss_pred             HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      |+++++.++++++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++.
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~--------~~~~~G~i~~~~~~~~   50 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL--------LPPDSGSILINGKDIS   50 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS--------SHESEEEEEETTEEGT
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccc--------cccccccccccccccc
Confidence            4688999999986 99999999999999999998        7788999999988765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.28  E-value=2.8e-12  Score=88.52  Aligned_cols=49  Identities=27%  Similarity=0.487  Sum_probs=44.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~   64 (213)
T cd03262          15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--------EEPDSGTIIIDGLKL   64 (213)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEC
Confidence            67899999999986 99999999999999999998        778889999998765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.28  E-value=2.9e-12  Score=89.71  Aligned_cols=50  Identities=24%  Similarity=0.359  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   65 (236)
T cd03219          15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--------LRPTSGSVLFDGEDIT   65 (236)
T ss_pred             EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCceEEECCEECC
Confidence            67899999999986 99999999999999999998        7788899999987654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.28  E-value=3.1e-12  Score=88.33  Aligned_cols=51  Identities=31%  Similarity=0.438  Sum_probs=45.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~v~~~g~~~~   65 (213)
T cd03301          14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--------EEPTSGRIYIGGRDVT   65 (213)
T ss_pred             eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            368899999999986 99999999999999999998        7788999999987653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.28  E-value=3.1e-12  Score=87.85  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   63 (206)
T TIGR03608        13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL--------EKFDSGQVYLNGKETP   63 (206)
T ss_pred             EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcc
Confidence            67899999999986 99999999999999999998        7788899999988754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.27  E-value=3.1e-12  Score=88.33  Aligned_cols=51  Identities=24%  Similarity=0.431  Sum_probs=45.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i~   66 (214)
T cd03292          15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE--------ELPTSGTIRVNGQDVS   66 (214)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcc
Confidence            368899999999986 99999999999999999998        7788899999987654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.27  E-value=3.1e-12  Score=89.53  Aligned_cols=51  Identities=24%  Similarity=0.367  Sum_probs=46.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   70 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL--------ERPTSGSVLVDGTDLT   70 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence            468899999999986 99999999999999999998        7788899999998664

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.27  E-value=1.1e-11  Score=85.22  Aligned_cols=51  Identities=22%  Similarity=0.414  Sum_probs=47.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++++++. -++|+|||||||+++.|.+.        ..|+.|+|.++++++.
T Consensus        16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--------e~pt~G~i~~~~~dl~   67 (223)
T COG2884          16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--------ERPTRGKILVNGHDLS   67 (223)
T ss_pred             hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--------hcCCCceEEECCeecc
Confidence            489999999999997 99999999999999999998        7889999999999887

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.27  E-value=3.2e-12  Score=89.90  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   67 (239)
T cd03296          17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--------ERPDSGTILFGGEDAT   67 (239)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            67899999999986 99999999999999999998        7788899999987653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=2.9e-12  Score=95.37  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl--------~~p~~G~I~~~g~~i~   69 (356)
T PRK11650         19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--------ERITSGEIWIGGRVVN   69 (356)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC--------CCCCceEEEECCEECC
Confidence            67899999999986 99999999999999999999        7889999999998764

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.27  E-value=2.2e-12  Score=89.16  Aligned_cols=48  Identities=25%  Similarity=0.344  Sum_probs=43.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~   65 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.+
T Consensus        14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~   62 (213)
T cd03235          14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL--------LKPTSGSIRVFGKP   62 (213)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCCEEEECCcc
Confidence            67899999999986 99999999999999999998        77888999998864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.27  E-value=2.3e-12  Score=88.85  Aligned_cols=49  Identities=27%  Similarity=0.341  Sum_probs=44.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~   64 (210)
T cd03269          15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--------ILPDSGEVLFDGKPL   64 (210)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCCch
Confidence            57889999999986 99999999999999999998        778889999988654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.27  E-value=3.6e-12  Score=86.16  Aligned_cols=50  Identities=26%  Similarity=0.415  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   65 (178)
T cd03229          15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--------EEPDSGSILIDGEDLT   65 (178)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            67889999999986 99999999999999999998        7788899999988664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.27  E-value=3.2e-12  Score=88.73  Aligned_cols=50  Identities=30%  Similarity=0.470  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   70 (221)
T TIGR02211        20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL--------DNPTSGEVLFNGQSLS   70 (221)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEhh
Confidence            68899999999986 99999999999999999998        7788999999987664

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.27  E-value=4e-12  Score=88.06  Aligned_cols=51  Identities=24%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++++++++++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   70 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--------LEPDAGFATVDGFDVV   70 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCCceEEECCEEcc
Confidence            378899999999986 99999999999999999998        7788999999988664

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.27  E-value=3.3e-12  Score=89.61  Aligned_cols=50  Identities=28%  Similarity=0.382  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   66 (241)
T cd03256          16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--------VEPTSGSVLIDGTDIN   66 (241)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCCceEEECCEecc
Confidence            68899999999986 99999999999999999998        7788899999987664

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.26  E-value=3.3e-11  Score=79.31  Aligned_cols=78  Identities=18%  Similarity=0.113  Sum_probs=61.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccccc---CCcccCceEEEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQH---QPTQHPTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~---~pt~~~~~g~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .|+++|.+|||||||++++.+.++...   .+|.......+..+   +..+.++|++|++.++..|..++..+|+++.+.
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            479999999999999999998765332   22333333444443   678899999999999899999999999999999


Q ss_pred             eCCC
Q 033893           96 KIEF   99 (109)
Q Consensus        96 ~~~~   99 (109)
                      +.+.
T Consensus        82 d~~~   85 (168)
T cd01887          82 AADD   85 (168)
T ss_pred             ECCC
Confidence            8764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.26  E-value=3.5e-12  Score=89.06  Aligned_cols=50  Identities=26%  Similarity=0.312  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   65 (230)
T TIGR03410        15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--------LPVKSGSIRLDGEDIT   65 (230)
T ss_pred             EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEECC
Confidence            67899999999986 99999999999999999998        7788999999987653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.26  E-value=4.2e-12  Score=88.33  Aligned_cols=50  Identities=18%  Similarity=0.375  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i~   67 (222)
T PRK10908         17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI--------ERPSAGKIWFSGHDIT   67 (222)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999998        7788999999987664

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.26  E-value=4e-12  Score=89.23  Aligned_cols=50  Identities=20%  Similarity=0.356  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~i~   66 (236)
T TIGR03864        16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--------YVAQEGQISVAGHDLR   66 (236)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCEEcc
Confidence            57889999999986 99999999999999999998        7788999999987654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.26  E-value=3.4e-12  Score=88.96  Aligned_cols=50  Identities=24%  Similarity=0.369  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc-----cCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----HPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~-----~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++.+|++ +|+|+||||||||+++|+|.        .     .++.|+|.++|.++.
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~~~   70 (227)
T cd03260          15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL--------NDLIPGAPDEGEVLLDGKDIY   70 (227)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cccccCCCCCeEEEECCEEhh
Confidence            68899999999986 99999999999999999998        6     678899999987654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.26  E-value=3.3e-12  Score=94.94  Aligned_cols=50  Identities=26%  Similarity=0.382  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|..+.
T Consensus        19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~~~   69 (353)
T TIGR03265        19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL--------ERQTAGTIYQGGRDIT   69 (353)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--------CCCCceEEEECCEECC
Confidence            57889999999986 99999999999999999999        7889999999998664

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.26  E-value=3.8e-12  Score=88.80  Aligned_cols=50  Identities=28%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~~~   75 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL--------DDGSSGEVSLVGQPLH   75 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCeeEEECCEEcc
Confidence            68899999999986 99999999999999999998        7788999999988664

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.26  E-value=3.5e-12  Score=94.41  Aligned_cols=50  Identities=18%  Similarity=0.332  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++.
T Consensus        56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl--------~~p~~G~i~i~G~~~~  106 (340)
T PRK13536         56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--------TSPDAGKITVLGVPVP  106 (340)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCceEEEECCEECC
Confidence            68899999999987 99999999999999999998        7888999999997653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=3.8e-12  Score=90.62  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=44.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~   65 (255)
T PRK11248         16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF--------VPYQHGSITLDGKPV   65 (255)
T ss_pred             eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEC
Confidence            67899999999986 99999999999999999998        778889999988765

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.25  E-value=4.6e-12  Score=92.17  Aligned_cols=49  Identities=20%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~   68 (303)
T TIGR01288        19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM--------ISPDRGKITVLGEPV   68 (303)
T ss_pred             EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEC
Confidence            68899999999986 99999999999999999998        778899999998765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.25  E-value=4.7e-12  Score=87.21  Aligned_cols=50  Identities=22%  Similarity=0.353  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.++++++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++.
T Consensus        16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~v~~~g~~~~   66 (204)
T PRK13538         16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL--------ARPDAGEVLWQGEPIR   66 (204)
T ss_pred             EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEcc
Confidence            57899999999986 99999999999999999998        7788899999987654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.4e-12  Score=91.68  Aligned_cols=50  Identities=20%  Similarity=0.354  Sum_probs=46.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   72 (287)
T PRK13641         22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL--------LKPSSGTITIAGYHIT   72 (287)
T ss_pred             ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence            78999999999986 99999999999999999998        8888999999998664

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.25  E-value=5.1e-12  Score=85.69  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   65 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--------RPPASGEITLDGKPVT   65 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC
Confidence            67899999999986 99999999999999999998        7788999999997665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.6e-12  Score=94.18  Aligned_cols=50  Identities=26%  Similarity=0.435  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--------~~p~~G~I~~~g~~i~   71 (351)
T PRK11432         21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL--------EKPTEGQIFIDGEDVT   71 (351)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC--------CCCCceEEEECCEECC
Confidence            57889999999986 99999999999999999999        8889999999998764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.25  E-value=5.3e-12  Score=88.75  Aligned_cols=50  Identities=24%  Similarity=0.452  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++.++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   66 (240)
T PRK09493         16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--------EEITSGDLIVDGLKVN   66 (240)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788999999987654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.25  E-value=5.5e-12  Score=86.42  Aligned_cols=50  Identities=24%  Similarity=0.332  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+.++++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   65 (198)
T TIGR01189        15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL--------LRPDSGEVRWNGTALA   65 (198)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCEEcc
Confidence            57899999999986 99999999999999999998        7778899999987654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=4.5e-12  Score=91.60  Aligned_cols=50  Identities=18%  Similarity=0.346  Sum_probs=46.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl--------~~p~~G~i~~~g~~i~   72 (286)
T PRK13646         22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--------LKPTTGTVTVDDITIT   72 (286)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence            78999999999986 99999999999999999998        7888999999998664

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=5.5e-12  Score=90.66  Aligned_cols=50  Identities=20%  Similarity=0.394  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~i~   72 (280)
T PRK13649         22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--------HVPTQGSVRVDDTLIT   72 (280)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            78999999999986 99999999999999999998        7788999999987664

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=5.7e-12  Score=90.26  Aligned_cols=51  Identities=20%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   66 (271)
T PRK13638         15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--------LRPQKGAVLWQGKPLD   66 (271)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCccEEEECCEEcc
Confidence            378999999999986 99999999999999999998        7788999999998764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.24  E-value=4.3e-12  Score=87.44  Aligned_cols=50  Identities=30%  Similarity=0.506  Sum_probs=44.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   65 (208)
T cd03268          15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--------IKPDSGEITFDGKSYQ   65 (208)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCCccc
Confidence            67899999999986 99999999999999999998        7788899999887553

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.24  E-value=4.5e-12  Score=93.97  Aligned_cols=51  Identities=24%  Similarity=0.343  Sum_probs=46.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|+++++++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl--------~~p~~G~I~i~G~~i~   70 (343)
T TIGR02314        19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--------ERPTSGSVIVDGQDLT   70 (343)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            378999999999997 99999999999999999999        7889999999998765

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.24  E-value=4.6e-12  Score=87.44  Aligned_cols=50  Identities=28%  Similarity=0.329  Sum_probs=44.3

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++.++|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 ~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   64 (211)
T cd03264          15 ALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL--------TPPSSGTIRIDGQDVL   64 (211)
T ss_pred             EEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCCccc
Confidence            6789999998885599999999999999999998        7788999999887554

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.24  E-value=3.4e-11  Score=82.78  Aligned_cols=85  Identities=16%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             cEEEEEeCCCCcHHHHHH-HHhcCc-----c-cccCCcccC-ce---E-------EEEECC--EEEEEEEcCCccccccc
Q 033893           21 AKILFLGLDNAGKTTLLH-MLKDER-----L-VQHQPTQHP-TS---E-------ELSIGK--IKFKAFDLGGHQIARRV   80 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~-~l~g~~-----~-~~~~pt~~~-~~---g-------~i~~~~--~~i~~~d~~g~~~~r~~   80 (109)
                      .+|+++|.+|+|||+|+. .+.+..     + .++.||++. +.   .       .+.+++  +.+.+||++|+++  .+
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~   80 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KD   80 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hh
Confidence            478999999999999995 554332     2 346777742 11   1       113454  6788999999875  34


Q ss_pred             HHhhhhcCCEEEEEEeCCCcccccccc
Q 033893           81 WKDYYAKVIGSFKTKKIEFRDFYEVEI  107 (109)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~  107 (109)
                      .+.||+++++++++++++...+++...
T Consensus        81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~  107 (195)
T cd01873          81 RRFAYGRSDVVLLCFSIASPNSLRNVK  107 (195)
T ss_pred             hcccCCCCCEEEEEEECCChhHHHHHH
Confidence            467899999999999999888877653

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.24  E-value=7.2e-12  Score=88.49  Aligned_cols=50  Identities=26%  Similarity=0.484  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   68 (250)
T PRK11264         18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL--------EQPEAGTIRVGDITID   68 (250)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcc
Confidence            68899999999986 99999999999999999998        7788899999988764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.24  E-value=6.1e-12  Score=89.85  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   76 (265)
T TIGR02769        26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL--------EKPAQGTVSFRGQDLY   76 (265)
T ss_pred             EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEcc
Confidence            78999999999986 99999999999999999998        7788999999987654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=5.3e-12  Score=88.81  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   68 (241)
T PRK10895         18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI--------VPRDAGNIIIDDEDIS   68 (241)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence            67899999999986 99999999999999999998        7788899999987653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=5.6e-12  Score=88.86  Aligned_cols=50  Identities=26%  Similarity=0.433  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   68 (241)
T PRK14250         18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL--------IDPTEGSILIDGVDIK   68 (241)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEhh
Confidence            67899999999986 99999999999999999998        7788999999987654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.24  E-value=2.2e-12  Score=86.23  Aligned_cols=90  Identities=21%  Similarity=0.348  Sum_probs=77.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+++++|+-=+|||+|+-....++| ..+.+|..  |...++.+++  .++.+||.+||+++..+=+.||+..++++.+
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV   92 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV   92 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence            35789999999999999999998888 46777665  4445566665  5778999999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      +|++.++++.+.+.|
T Consensus        93 yDITDrdSFqKVKnW  107 (218)
T KOG0088|consen   93 YDITDRDSFQKVKNW  107 (218)
T ss_pred             EeccchHHHHHHHHH
Confidence            999999999987766

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.24  E-value=6.9e-12  Score=87.79  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=44.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC----ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP----TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~----~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..+    +.|+|.++|.++.
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~~~~~G~i~~~g~~~~   55 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGL--------LPPGLTQTSGEILLDGRPLL   55 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCccCccccEEEECCEech
Confidence            36789999999986 99999999999999999998        665    7899999987654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.24  E-value=5.4e-12  Score=88.87  Aligned_cols=50  Identities=26%  Similarity=0.401  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   66 (242)
T cd03295          16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL--------IEPTSGEIFIDGEDIR   66 (242)
T ss_pred             EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCeEcC
Confidence            67899999999986 99999999999999999998        7788899999987654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.24  E-value=5.1e-12  Score=91.38  Aligned_cols=51  Identities=22%  Similarity=0.378  Sum_probs=46.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++.+|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   72 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--------LKPTSGKIIIDGVDIT   72 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCccEEEECCEECC
Confidence            378999999999986 99999999999999999998        7888999999997664

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.24  E-value=7.6e-12  Score=84.07  Aligned_cols=51  Identities=29%  Similarity=0.435  Sum_probs=45.5

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++++|.        ..++.|++.+++.++.
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~--------~~~~~G~i~~~g~~~~   67 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--------YDPTSGEILIDGVDLR   67 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCCEEEECCEEhh
Confidence            368899999999986 99999999999999999998        7778899999987654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.23  E-value=6.4e-12  Score=90.03  Aligned_cols=50  Identities=28%  Similarity=0.417  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl--------~~p~~G~i~i~g~~~~   89 (269)
T cd03294          39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--------IEPTSGKVLIDGQDIA   89 (269)
T ss_pred             EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcc
Confidence            57899999999986 99999999999999999998        7788899999987664

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.23  E-value=6e-12  Score=87.92  Aligned_cols=50  Identities=26%  Similarity=0.381  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   72 (225)
T PRK10247         22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDIS   72 (225)
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCeEEECCEEcC
Confidence            68899999999986 99999999999999999998        7788899999987653

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.23  E-value=6.6e-12  Score=89.84  Aligned_cols=51  Identities=29%  Similarity=0.409  Sum_probs=46.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   78 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--------IEPTSGELLIDDHPLH   78 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEECC
Confidence            378999999999986 99999999999999999998        7888999999987654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.23  E-value=6.3e-12  Score=84.05  Aligned_cols=50  Identities=26%  Similarity=0.434  Sum_probs=44.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~v~~~g~~~~   65 (163)
T cd03216          15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL--------YKPDSGEILVDGKEVS   65 (163)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEECC
Confidence            67889999999986 99999999999999999998        7788899999887654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.23  E-value=7.4e-12  Score=87.32  Aligned_cols=50  Identities=26%  Similarity=0.420  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   68 (229)
T cd03254          18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--------YDPQKGQILIDGIDIR   68 (229)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCEeHH
Confidence            78999999999986 99999999999999999998        7788899999987553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.23  E-value=6.3e-12  Score=91.46  Aligned_cols=50  Identities=22%  Similarity=0.345  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl--------~~~~~G~i~i~g~~~~   67 (301)
T TIGR03522        17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--------LPPDSGSVQVCGEDVL   67 (301)
T ss_pred             EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            67899999999987 99999999999999999998        7888999999987654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.23  E-value=6.5e-12  Score=94.11  Aligned_cols=50  Identities=22%  Similarity=0.413  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--------~~p~~G~I~~~g~~i~   79 (375)
T PRK09452         29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--------ETPDSGRIMLDGQDIT   79 (375)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            57889999999986 99999999999999999999        7888999999998664

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.23  E-value=8e-12  Score=84.12  Aligned_cols=50  Identities=30%  Similarity=0.415  Sum_probs=44.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||++.|+|.        ..+..|+|.+++.++.
T Consensus        15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~   65 (173)
T cd03230          15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL--------LKPDSGEIKVLGKDIK   65 (173)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEcc
Confidence            67899999999986 99999999999999999998        7778899999987654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.23  E-value=6.1e-12  Score=88.46  Aligned_cols=50  Identities=22%  Similarity=0.510  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~   67 (242)
T TIGR03411        17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK--------TRPDEGSVLFGGTDLT   67 (242)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEECCeecC
Confidence            68899999999986 99999999999999999998        7788899999987654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.23  E-value=7.8e-12  Score=84.75  Aligned_cols=72  Identities=25%  Similarity=0.332  Sum_probs=58.1

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .+|+++||.+++|+ ++|.||||||||||+++++..        ..++.|++.+.|.++.-.   +.+.+|.- -.|+++
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L--------isp~~G~l~f~Ge~vs~~---~pea~Rq~-VsY~~Q   84 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDVSTL---KPEAYRQQ-VSYCAQ   84 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc--------cCCCCceEEEcCcccccc---ChHHHHHH-HHHHHc
Confidence            36889999999998 599999999999999999998        889999999999988733   34445554 367776


Q ss_pred             CCEEE
Q 033893           88 VIGSF   92 (109)
Q Consensus        88 ~~~~v   92 (109)
                      ..+++
T Consensus        85 ~paLf   89 (223)
T COG4619          85 TPALF   89 (223)
T ss_pred             Ccccc
Confidence            65544

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.23  E-value=5.4e-12  Score=86.68  Aligned_cols=50  Identities=24%  Similarity=0.405  Sum_probs=44.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|..+.
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~v~~~g~~~~   66 (200)
T PRK13540         16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL--------LNPEKGEILFERQSIK   66 (200)
T ss_pred             EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeeEEECCCccc
Confidence            68899999999986 99999999999999999998        7788999999887653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.23  E-value=7.8e-12  Score=87.66  Aligned_cols=49  Identities=22%  Similarity=0.400  Sum_probs=43.4

Q ss_pred             HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   50 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL--------AQPTSGGVILEGKQIT   50 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC
Confidence            3678999999986 99999999999999999998        7788899999987653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.23  E-value=8.4e-12  Score=86.62  Aligned_cols=50  Identities=20%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   69 (221)
T cd03244          19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--------VELSSGSILIDGVDIS   69 (221)
T ss_pred             cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCCEEEECCEEhH
Confidence            78999999999986 99999999999999999998        7788899999987654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=6.7e-12  Score=90.20  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   67 (274)
T PRK13644         17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--------LRPQKGKVLVSGIDTG   67 (274)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEECC
Confidence            78999999999986 99999999999999999998        7788899999987664

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.23  E-value=7.6e-12  Score=86.78  Aligned_cols=50  Identities=24%  Similarity=0.363  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++..+.
T Consensus        19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   69 (220)
T cd03245          19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--------YKPTSGSVLLDGTDIR   69 (220)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCeEEECCEEhH
Confidence            78999999999986 99999999999999999998        6778899999887653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.23  E-value=1.1e-12  Score=85.61  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             EEeCCCCcHHHHHHHHhcCcc--cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           25 FLGLDNAGKTTLLHMLKDERL--VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        25 lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ++|.++.|||.||-.+....|  .+.++|++.+..  -|..++  +++++||.+||+++|++...||+.+++++..++++
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999988886654  357777875543  345555  67789999999999999999999999999999999


Q ss_pred             CccccccccCC
Q 033893           99 FRDFYEVEIFW  109 (109)
Q Consensus        99 ~~~~~~~~~~w  109 (109)
                      .+.+++..+.|
T Consensus        82 nkasfdn~~~w   92 (192)
T KOG0083|consen   82 NKASFDNCQAW   92 (192)
T ss_pred             cchhHHHHHHH
Confidence            99999887666

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.22  E-value=7.3e-12  Score=87.87  Aligned_cols=50  Identities=28%  Similarity=0.442  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   68 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--------YDPTSGEILLDGVDIR   68 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc--------CCCCCCEEEECCEehh
Confidence            78899999999986 99999999999999999998        7788899999987653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.22  E-value=8.7e-12  Score=87.73  Aligned_cols=50  Identities=30%  Similarity=0.422  Sum_probs=45.0

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .+|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++..+
T Consensus        35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~~   85 (236)
T cd03267          35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--------LQPTSGEVRVAGLVP   85 (236)
T ss_pred             eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCEEc
Confidence            378899999999986 99999999999999999998        778899999988753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.22  E-value=8e-12  Score=88.47  Aligned_cols=50  Identities=16%  Similarity=0.291  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||++.|+|.        ..++.|+|.++|.++.
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i~   65 (252)
T TIGR03005        15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL--------EPIDEGQIQVEGEQLY   65 (252)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999998        7788999999998765

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.22  E-value=6.2e-12  Score=90.19  Aligned_cols=49  Identities=22%  Similarity=0.236  Sum_probs=44.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i   71 (272)
T PRK15056         22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--------VRLASGKISILGQPT   71 (272)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEh
Confidence            67899999999986 99999999999999999998        778899999998764

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=8.7e-12  Score=87.76  Aligned_cols=50  Identities=30%  Similarity=0.397  Sum_probs=45.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~   66 (242)
T PRK11124         16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL--------EMPRSGTLNIAGNHF   66 (242)
T ss_pred             eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEec
Confidence            368899999999986 99999999999999999998        778889999998765

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.22  E-value=7.3e-12  Score=84.79  Aligned_cols=50  Identities=32%  Similarity=0.438  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++.++++++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++.
T Consensus        14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--------~~~~~G~v~~~g~~~~   64 (180)
T cd03214          14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--------LKPSSGEILLDGKDLA   64 (180)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence            67899999999986 99999999999999999998        7788999999987664

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=7.8e-12  Score=88.53  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.++|..+.
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   70 (255)
T PRK11300         20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--------YKPTGGTILLRGQHIE   70 (255)
T ss_pred             EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC--------cCCCcceEEECCEECC
Confidence            67899999999986 99999999999999999998        7788999999987653

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=7.2e-12  Score=90.02  Aligned_cols=50  Identities=28%  Similarity=0.310  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   70 (274)
T PRK13647         20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--------YLPQRGRVKVMGREVN   70 (274)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            78999999999986 99999999999999999998        7788999999987653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.22  E-value=1e-11  Score=87.75  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=44.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc-----eEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-----SEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-----~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||++.|+|.        ..++     .|+|.++|.++.
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~~~~~~G~i~~~g~~~~   71 (247)
T TIGR00972        16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM--------NDLVPGVRIEGKVLFDGQDIY   71 (247)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCcCCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999998        5555     899999988664

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=7.3e-12  Score=90.07  Aligned_cols=50  Identities=22%  Similarity=0.299  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   69 (277)
T PRK13652         19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI--------LKPTSGSVLIRGEPIT   69 (277)
T ss_pred             eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            78999999999986 99999999999999999998        7888999999987654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=6.9e-12  Score=90.63  Aligned_cols=49  Identities=18%  Similarity=0.309  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i   75 (289)
T PRK13645         26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL--------IISETGQTIVGDYAI   75 (289)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEc
Confidence            78999999999986 99999999999999999998        778889999998765

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=7.6e-12  Score=87.80  Aligned_cols=50  Identities=28%  Similarity=0.397  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~   70 (237)
T PRK11614         20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD--------PRATSGRIVFDGKDIT   70 (237)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCceEEECCEecC
Confidence            68899999999986 99999999999999999998        7788899999987654

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=6.6e-12  Score=92.95  Aligned_cols=51  Identities=24%  Similarity=0.341  Sum_probs=46.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl--------~~p~~G~I~~~g~~i~   70 (343)
T PRK11153         19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL--------ERPTSGRVLVDGQDLT   70 (343)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            368899999999986 99999999999999999998        7788999999998664

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.22  E-value=6.5e-12  Score=89.95  Aligned_cols=50  Identities=26%  Similarity=0.399  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   72 (269)
T PRK11831         22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ--------IAPDHGEILFDGENIP   72 (269)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence            57889999999986 99999999999999999998        7788899999987654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=9.3e-12  Score=89.09  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~   74 (269)
T PRK13648         24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--------EKVKSGEIFYNNQAIT   74 (269)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788999999997654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.22  E-value=7.9e-12  Score=86.31  Aligned_cols=49  Identities=18%  Similarity=0.354  Sum_probs=44.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|+++++++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++
T Consensus        17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~   66 (207)
T PRK13539         17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--------LPPAAGTIKLDGGDI   66 (207)
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEeC
Confidence            57899999999986 99999999999999999998        777889999988754

>PRK04213 GTP-binding protein; Provisional

Probab=99.22  E-value=4.9e-11  Score=81.39  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=54.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceEEEEECCEEEEEEEcCC-----------cccccccHHhhhh-
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYYA-   86 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g~i~~~~~~i~~~d~~g-----------~~~~r~~~~~~~~-   86 (109)
                      ..+|+++|.+|+|||||++++.+..+. ...|........+.++  .+.+||++|           +++++..+..|+. 
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIED   86 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHh
Confidence            457899999999999999999987653 3455444444444444  578999999           6778888888876 


Q ss_pred             cC---CEEEEEEeC
Q 033893           87 KV---IGSFKTKKI   97 (109)
Q Consensus        87 ~~---~~~v~~~~~   97 (109)
                      ++   +.++.+.+-
T Consensus        87 ~~~~~~~vi~v~d~  100 (201)
T PRK04213         87 NADRILAAVLVVDG  100 (201)
T ss_pred             hhhhheEEEEEEeC
Confidence            33   455555554

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.22  E-value=1.1e-11  Score=85.33  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=44.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   65 (201)
T cd03231          15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL--------SPPLAGRVLLNGGPLD   65 (201)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence            67899999999986 99999999999999999998        7788899999887653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.21  E-value=8.3e-12  Score=96.60  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             HHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893            8 YGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA   86 (109)
Q Consensus         8 ~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~   86 (109)
                      ..++++|||++++|++ +|+|+||||||||.++|.|.        ..|+.|+|.++|.+   .++.+.     -+..+.+
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL--------~~P~~G~i~~~g~~---~~~~~~-----~~~~~r~  367 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL--------LPPSSGSIIFDGQD---LDLTGG-----ELRRLRR  367 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEEeCcc---cccccc-----hhhhhhh
Confidence            4679999999999997 99999999999999999999        88899999999877   233321     1234455


Q ss_pred             cCCEEEEEEeCCCcccccc
Q 033893           87 KVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~~  105 (109)
                      +...+++.+..++.++.++
T Consensus       368 ~~QmvFQdp~~SLnPr~tV  386 (539)
T COG1123         368 RIQMVFQDPYSSLNPRMTV  386 (539)
T ss_pred             heEEEEeCcccccCccccH
Confidence            6677777777777777665

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.21  E-value=9.9e-12  Score=83.66  Aligned_cols=50  Identities=18%  Similarity=0.328  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~   67 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--------LRPTSGRVRLDGADIS   67 (173)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCeEEECCEEcc
Confidence            67899999999986 99999999999999999998        7788899999987664

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.21  E-value=7.4e-12  Score=84.55  Aligned_cols=49  Identities=29%  Similarity=0.523  Sum_probs=44.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++++++++++ +|+|+||||||||++.|+|.        ..+..|+|.+++.++
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~   66 (178)
T cd03247          17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD--------LKPQQGEITLDGVPV   66 (178)
T ss_pred             ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCEEEECCEEH
Confidence            68899999999986 99999999999999999998        777889999988754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=8.5e-12  Score=89.90  Aligned_cols=50  Identities=20%  Similarity=0.376  Sum_probs=46.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~--------~~p~~G~i~~~g~~i~   72 (279)
T PRK13635         22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL--------LLPEAGTITVGGMVLS   72 (279)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECCEECC
Confidence            78999999999987 99999999999999999998        7888999999998764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.21  E-value=1e-11  Score=87.19  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~~~~i~   67 (109)
                      +|+++++.+++|++ +|+|+||||||||+++|+|.        .  .++.|+|.++|.++.
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~G~i~~~g~~~~   67 (243)
T TIGR01978        15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--------PSYEVTSGTILFKGQDLL   67 (243)
T ss_pred             EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCcceEEECCEecC
Confidence            67899999999986 99999999999999999997        3  367799999887553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.21  E-value=9.2e-12  Score=88.93  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   72 (265)
T PRK10253         22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL--------MTPAHGHVWLDGEHIQ   72 (265)
T ss_pred             EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCcEEEECCEEhh
Confidence            67899999999986 99999999999999999998        7788899999987654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.21  E-value=9.5e-12  Score=86.97  Aligned_cols=50  Identities=22%  Similarity=0.271  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++++|.        ..++.|+|.+++..+.
T Consensus        37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~   87 (224)
T cd03220          37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--------YPPDSGTVTVRGRVSS   87 (224)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEch
Confidence            68899999999986 99999999999999999998        7788999999987653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=8.2e-12  Score=90.44  Aligned_cols=51  Identities=25%  Similarity=0.357  Sum_probs=46.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|+++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   72 (290)
T PRK13634         21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL--------LQPTSGTVTIGERVIT   72 (290)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence            378999999999986 99999999999999999998        7788899999998663

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.21  E-value=8.8e-12  Score=89.01  Aligned_cols=50  Identities=28%  Similarity=0.462  Sum_probs=44.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .++++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.+++..+
T Consensus        26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~   76 (257)
T PRK11247         26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL--------ETPSAGELLAGTAPL   76 (257)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEH
Confidence            368899999999986 99999999999999999998        778889999887643

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.21  E-value=9.6e-12  Score=86.99  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=45.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||++.|+|.        ..++.|+|.++|..+.
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   67 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF--------YDVDSGRILIDGHDVR   67 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccCCCCEEEECCEEhh
Confidence            368899999999986 99999999999999999998        7788899999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.21  E-value=1.1e-11  Score=86.05  Aligned_cols=50  Identities=28%  Similarity=0.365  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+.+|++ +|+|+||||||||+++|.|.        ..++.|+|.+++..+.
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~i~   76 (214)
T PRK13543         26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL--------LHVESGQIQIDGKTAT   76 (214)
T ss_pred             eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC--------CCCCCeeEEECCEEcc
Confidence            67899999999986 99999999999999999998        7788899999987654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.21  E-value=9.6e-12  Score=88.58  Aligned_cols=50  Identities=30%  Similarity=0.473  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~p~~G~i~~~g~~~~   67 (258)
T PRK13548         17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--------LSPDSGEVRLNGRPLA   67 (258)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEEcc
Confidence            68899999999986 99999999999999999998        7788899999987654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.21  E-value=1e-11  Score=85.61  Aligned_cols=51  Identities=25%  Similarity=0.382  Sum_probs=44.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc---CceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH---PTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~---~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|.        ..   ++.|+|.+++.++.
T Consensus        21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~~~~G~i~i~g~~~~   75 (202)
T cd03233          21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR--------TEGNVSVEGDIHYNGIPYK   75 (202)
T ss_pred             eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc--------CCCCCCcceEEEECCEECc
Confidence            367899999999986 99999999999999999998        55   67899999987654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=8.5e-12  Score=89.11  Aligned_cols=50  Identities=30%  Similarity=0.474  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   76 (265)
T PRK10575         26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH--------QPPSEGEILLDAQPLE   76 (265)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCCEEEECCEehh
Confidence            67899999999986 99999999999999999998        7788899999987653

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.21  E-value=8.3e-12  Score=86.77  Aligned_cols=48  Identities=19%  Similarity=0.176  Sum_probs=41.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEE-ECCEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS-IGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~-~~~~~   65 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|. +++..
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~~~sG~i~~~~~~~   51 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL--------DAPDEGDFIGLRGDA   51 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------ccCCCCCEEEecCce
Confidence            47899999999986 99999999999999999998        677888886 66543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.1e-11  Score=88.87  Aligned_cols=51  Identities=25%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~i~   74 (271)
T PRK13632         23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--------LKPQSGEIKIDGITIS   74 (271)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEecC
Confidence            368999999999986 99999999999999999998        7788899999987664

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.20  E-value=9.3e-12  Score=87.29  Aligned_cols=50  Identities=20%  Similarity=0.339  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   67 (237)
T cd03252          17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--------YVPENGRVLVDGHDLA   67 (237)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCeehH
Confidence            68899999999986 99999999999999999998        7788899999987653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.20  E-value=1.5e-11  Score=84.33  Aligned_cols=51  Identities=25%  Similarity=0.326  Sum_probs=45.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~~~~i~   67 (109)
                      .++++++++++++++ +|+|+||||||||++.|+|.        .  .+..|+|.+++.++.
T Consensus        23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl--------~~~~~~~G~i~~~g~~~~   76 (194)
T cd03213          23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR--------RTGLGVSGEVLINGRPLD   76 (194)
T ss_pred             cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCceEEEECCEeCc
Confidence            478999999999986 99999999999999999998        6  778899999987654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.20  E-value=1e-11  Score=88.14  Aligned_cols=50  Identities=20%  Similarity=0.429  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   66 (256)
T TIGR03873        16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--------LRPDAGTVDLAGVDLH   66 (256)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCCEEEECCEEcc
Confidence            67899999999986 99999999999999999998        7788899999988665

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.20  E-value=1.8e-11  Score=85.44  Aligned_cols=50  Identities=26%  Similarity=0.359  Sum_probs=44.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc---CceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH---PTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~---~~~g~i~~~~~~i   66 (109)
                      .++++++++++++++ +|+|+||||||||++.|+|.        ..   ++.|+|.++|.++
T Consensus        21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~--------~~~~~~~~G~i~~~g~~~   74 (226)
T cd03234          21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR--------VEGGGTTSGQILFNGQPR   74 (226)
T ss_pred             ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc--------cCCCCCCceEEEECCEEC
Confidence            478999999999986 99999999999999999998        55   6789999988654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=9.9e-12  Score=89.30  Aligned_cols=50  Identities=28%  Similarity=0.393  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~   67 (275)
T PRK13639         17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI--------LKPTSGEVLIKGEPIK   67 (275)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCEECc
Confidence            68899999999986 99999999999999999998        7788999999997663

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.1e-11  Score=92.94  Aligned_cols=50  Identities=26%  Similarity=0.460  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--------~~p~~G~I~i~g~~i~   84 (377)
T PRK11607         34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF--------EQPTAGQIMLDGVDLS   84 (377)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            57889999999986 99999999999999999999        7888999999998654

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=9.9e-12  Score=89.52  Aligned_cols=50  Identities=16%  Similarity=0.275  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   72 (279)
T PRK13650         22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--------LEAESGQIIIDGDLLT   72 (279)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEECC
Confidence            78999999999986 99999999999999999998        7888999999998664

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.1e-11  Score=89.69  Aligned_cols=50  Identities=28%  Similarity=0.446  Sum_probs=46.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++.+|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~   71 (288)
T PRK13643         21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--------LQPTEGKVTVGDIVVS   71 (288)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence            78999999999985 99999999999999999998        7888999999998764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.20  E-value=9.4e-12  Score=92.89  Aligned_cols=50  Identities=24%  Similarity=0.347  Sum_probs=46.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--------~~p~~G~I~i~G~~i~   58 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL--------IEPTAGQIFIDGENIM   58 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            67899999999997 99999999999999999999        8888999999998765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.20  E-value=1.3e-11  Score=85.95  Aligned_cols=49  Identities=29%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~~~~~   64 (223)
T TIGR03740        15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--------LRPTSGEIIFDGHPW   64 (223)
T ss_pred             EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEec
Confidence            67899999999986 99999999999999999998        778899999988654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.2e-11  Score=89.04  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~i~g~~i~   75 (280)
T PRK13633         25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--------LIPSEGKVYVDGLDTS   75 (280)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEecc
Confidence            78999999999986 99999999999999999999        7788999999987664

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.3e-11  Score=89.15  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl--------~~p~~G~i~i~g~~~   70 (283)
T PRK13636         21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI--------LKPSSGRILFDGKPI   70 (283)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCccEEEECCEEC
Confidence            78899999999986 99999999999999999998        778899999999766

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.4e-11  Score=87.22  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|+|.        ..+     +.|+|.++|.++.
T Consensus        18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267         18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL--------LELNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCcccCCCCceEEEECCEEcc
Confidence            368899999999986 99999999999999999998        443     4899999987653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.1e-11  Score=92.60  Aligned_cols=50  Identities=32%  Similarity=0.493  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl--------~~p~~G~I~~~g~~i~   68 (369)
T PRK11000         18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--------EDITSGDLFIGEKRMN   68 (369)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            67899999999986 99999999999999999998        7888999999987654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.19  E-value=1.2e-11  Score=86.61  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~v~~~g~~~~   66 (236)
T cd03253          16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--------YDVSSGSILIDGQDIR   66 (236)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCEEEECCEEhh
Confidence            67899999999986 99999999999999999998        7788999999987654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.19  E-value=2.5e-10  Score=77.78  Aligned_cols=78  Identities=17%  Similarity=0.156  Sum_probs=60.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--CcccccC-------------Cccc----CceEEEEECCEEEEEEEcCCcccccccHH
Q 033893           22 KILFLGLDNAGKTTLLHMLKD--ERLVQHQ-------------PTQH----PTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g--~~~~~~~-------------pt~~----~~~g~i~~~~~~i~~~d~~g~~~~r~~~~   82 (109)
                      +|+++|.+|+|||||++++..  ..+....             ++.+    .....+..++..+.+||++|+++++..+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            579999999999999999985  3332211             1111    22345666788999999999999999999


Q ss_pred             hhhhcCCEEEEEEeCCC
Q 033893           83 DYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~~   99 (109)
                      .|++++++++++++.+.
T Consensus        84 ~~~~~~d~~ilV~d~~~  100 (194)
T cd01891          84 RVLSMVDGVLLLVDASE  100 (194)
T ss_pred             HHHHhcCEEEEEEECCC
Confidence            99999999999999764

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.19  E-value=1.2e-11  Score=85.79  Aligned_cols=51  Identities=14%  Similarity=0.258  Sum_probs=45.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   66 (218)
T cd03290          15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE--------MQTLEGKVHWSNKNES   66 (218)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCeEEECCcccc
Confidence            378899999999986 99999999999999999998        6778899999887654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.19  E-value=9.8e-12  Score=92.46  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++.++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--------~~p~~G~I~i~g~~i~   67 (353)
T PRK10851         17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL--------EHQTSGHIRFHGTDVS   67 (353)
T ss_pred             EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence            67899999999986 99999999999999999998        7888999999998664

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=1.3e-11  Score=87.65  Aligned_cols=50  Identities=30%  Similarity=0.428  Sum_probs=44.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   67 (255)
T PRK11231         17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL--------LTPQSGTVFLGDKPIS   67 (255)
T ss_pred             EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCCcEEEECCEEhH
Confidence            67899999999986 99999999999999999998        7788899999987653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.5e-11  Score=87.01  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|..-.  .| ..++.|+|.++|.++.
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~i~~~g~~i~   76 (253)
T PRK14242         21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL--IP-GARVEGEILLDGENIY   76 (253)
T ss_pred             eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhccc--CC-CCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999987100  00 0146799999987654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.1e-11  Score=85.85  Aligned_cols=53  Identities=26%  Similarity=0.392  Sum_probs=48.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      +++++++.++++.+ .++|||||||||||..++..        ...+.|+|.++|.++..|+
T Consensus        16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--------~~~d~G~i~i~g~~~~~~~   69 (252)
T COG4604          16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL--------LKKDSGEITIDGLELTSTP   69 (252)
T ss_pred             eeccceeeecCCceeEEECCCCccHHHHHHHHHHh--------ccccCceEEEeeeecccCC
Confidence            57889999999998 99999999999999999998        8899999999999998554

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.19  E-value=1.7e-11  Score=84.40  Aligned_cols=51  Identities=22%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+++++++.++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   73 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--------LEAEEGKIEIDGIDIS   73 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCeEEECCEEhH
Confidence            378999999999986 99999999999999999998        7788899999987653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.18  E-value=1.6e-11  Score=85.31  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~   70 (220)
T TIGR02982        20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--------RSVQEGSLKVLGQELY   70 (220)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEhH
Confidence            68899999999986 99999999999999999998        7788899999987654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.18  E-value=2.4e-11  Score=83.88  Aligned_cols=47  Identities=23%  Similarity=0.403  Sum_probs=42.4

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++|++.++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl--------~~~~~G~i~~~g~~~~   63 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF--------ETPQSGRVLINGVDVT   63 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcC
Confidence            78899999986 99999999999999999998        7788899999987654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.18  E-value=1.2e-11  Score=84.02  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .+|+++++.+++++ ++|+|+||||||||+-.++|.        ..++.|+|.+-|+.+.-.|..+..        -++.
T Consensus        24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL--------d~~ssGeV~l~G~~L~~ldEd~rA--------~~R~   87 (228)
T COG4181          24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL--------DDPSSGEVRLLGQPLHKLDEDARA--------ALRA   87 (228)
T ss_pred             eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC--------CCCCCceEEEcCcchhhcCHHHHH--------Hhhc
Confidence            46888999999887 699999999999999999999        788999999999888755543332        2344


Q ss_pred             CCEEEEEEeCCCccccc
Q 033893           88 VIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~  104 (109)
                      .+.-++++++-+-+.++
T Consensus        88 ~~vGfVFQSF~Lip~lt  104 (228)
T COG4181          88 RHVGFVFQSFHLIPNLT  104 (228)
T ss_pred             cceeEEEEeeeccccch
Confidence            56666666655544443

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.18  E-value=1.3e-11  Score=87.80  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=44.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~   65 (109)
                      ++++++|++++|++ +|+|+||||||||++.|+|.        ..++.|+|.+++.+
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~   69 (258)
T PRK11701         21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--------LAPDAGEVHYRMRD   69 (258)
T ss_pred             eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCcc
Confidence            67899999999986 99999999999999999998        77888999998876

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.18  E-value=1.4e-11  Score=84.73  Aligned_cols=47  Identities=23%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      .++++++++++++++ +|+|+||||||||++.|+|.        ..++.|+|.++|
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~--------~~~~~G~i~~~g   66 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--------LEKLSGSVSVPG   66 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc--------CCCCCCeEEEcC
Confidence            378999999999986 99999999999999999998        778889999987

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.18  E-value=1.6e-11  Score=88.29  Aligned_cols=51  Identities=27%  Similarity=0.339  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893            6 WFYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus         6 ~~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      +...++.++||++++|.+ +++|+|||||||++++|+|.        ..|+.|.+.++|.
T Consensus        35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl--------l~p~~G~v~V~G~   86 (325)
T COG4586          35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--------LLPTSGKVRVNGK   86 (325)
T ss_pred             hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc--------cccCCCeEEecCc
Confidence            355689999999999987 99999999999999999999        8888999988875

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=3.1e-11  Score=84.25  Aligned_cols=59  Identities=20%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             HHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893            8 YGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus         8 ~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      .++|++|++.+++.+| +++|||||||||+|+++..++  +..|... -.|+|.++|.++..+
T Consensus        20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn--dl~~~~r-~~G~v~~~g~ni~~~   79 (253)
T COG1117          20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN--DLIPGAR-VEGEVLLDGKNIYDP   79 (253)
T ss_pred             hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc--ccCcCce-EEEEEEECCeeccCC
Confidence            3689999999999998 999999999999999998763  2223222 359999999988744

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.18  E-value=1.4e-11  Score=85.78  Aligned_cols=50  Identities=14%  Similarity=0.315  Sum_probs=44.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .+++++++.++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|..+
T Consensus        28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~   78 (226)
T cd03248          28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--------YQPQGGQVLLDGKPI   78 (226)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCcEEEECCCch
Confidence            378999999999986 99999999999999999998        778889999988654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.18  E-value=6e-11  Score=80.68  Aligned_cols=74  Identities=20%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE----EcCCcccc-cccHHhh
Q 033893           11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF----DLGGHQIA-RRVWKDY   84 (109)
Q Consensus        11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~----d~~g~~~~-r~~~~~~   84 (109)
                      +.++ +.++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++..+.+.    ++++.++- -.+.+..
T Consensus        16 l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral   86 (177)
T cd03222          16 LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ--------LIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAAL   86 (177)
T ss_pred             EccC-cEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHH
Confidence            4443 67888876 99999999999999999998        788899999998765432    13333322 2244555


Q ss_pred             hhcCCEEEE
Q 033893           85 YAKVIGSFK   93 (109)
Q Consensus        85 ~~~~~~~v~   93 (109)
                      ..+++.++.
T Consensus        87 ~~~p~lllL   95 (177)
T cd03222          87 LRNATFYLF   95 (177)
T ss_pred             hcCCCEEEE
Confidence            556666555

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.18  E-value=1.9e-11  Score=86.88  Aligned_cols=50  Identities=16%  Similarity=0.365  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++..+.
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~   70 (257)
T PRK10619         20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGSIVVNGQTIN   70 (257)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEcc
Confidence            57899999999986 99999999999999999998        7788899999997664

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.17  E-value=1.3e-11  Score=93.16  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..+..|+|.++|.++.
T Consensus        18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl--------l~p~sG~I~l~G~~i~   68 (402)
T PRK09536         18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT--------LTPTAGTVLVAGDDVE   68 (402)
T ss_pred             EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--------CCCCCcEEEECCEEcC
Confidence            67899999999997 99999999999999999998        7888999999998664

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=2.2e-11  Score=86.07  Aligned_cols=50  Identities=22%  Similarity=0.317  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247         18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL--------IELYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCCCCceEEEECCEECC
Confidence            67899999999986 99999999999999999998        43     35899999987654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=2e-11  Score=87.47  Aligned_cols=50  Identities=14%  Similarity=0.176  Sum_probs=43.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||++.|+|.        ..     ++.|+|.++|.++.
T Consensus        28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~~~p~~G~v~~~g~~i~   83 (269)
T PRK14259         28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM--------NDLIEGCSLKGRVLFDGTDLY   83 (269)
T ss_pred             EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccccCCCCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999997        33     46899999987653

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=1.8e-11  Score=90.00  Aligned_cols=51  Identities=20%  Similarity=0.314  Sum_probs=46.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|+++++.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl--------~~p~~G~I~i~g~~~~   91 (320)
T PRK13631         40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL--------IKSKYGTIQVGDIYIG   91 (320)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEECCEEcc
Confidence            378999999999986 99999999999999999998        7888999999987664

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.17  E-value=1.6e-11  Score=86.90  Aligned_cols=48  Identities=17%  Similarity=0.119  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~   65 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.+
T Consensus        18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~   66 (253)
T TIGR02323        18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--------LAPDHGTATYIMRS   66 (253)
T ss_pred             EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEEeccc
Confidence            57899999999986 99999999999999999998        77888999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.17  E-value=1.5e-11  Score=80.81  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=56.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE-EEEEE-EcCCcccccc-cHHhhh
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI-KFKAF-DLGGHQIARR-VWKDYY   85 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~-~i~~~-d~~g~~~~r~-~~~~~~   85 (109)
                      ++++++|+++++++ +|+|+||||||||+++++|.        ..++.|+|.+++. .+.+. .+++.++-|. +.+...
T Consensus        15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~   86 (144)
T cd03221          15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--------LEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLL   86 (144)
T ss_pred             EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHh
Confidence            67889999999987 99999999999999999998        7788999999874 33322 3444333222 445556


Q ss_pred             hcCCEEEE
Q 033893           86 AKVIGSFK   93 (109)
Q Consensus        86 ~~~~~~v~   93 (109)
                      .+++.++.
T Consensus        87 ~~p~illl   94 (144)
T cd03221          87 ENPNLLLL   94 (144)
T ss_pred             cCCCEEEE
Confidence            66666555

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.17  E-value=2.6e-11  Score=84.99  Aligned_cols=50  Identities=32%  Similarity=0.438  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~--------~~~~~G~i~~~g~~~~   65 (232)
T cd03300          15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--------ETPTSGEILLDGKDIT   65 (232)
T ss_pred             eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcC
Confidence            68899999999986 99999999999999999998        7788899999987654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.17  E-value=2.1e-11  Score=87.67  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=44.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc--------eEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT--------SEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~--------~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++        .|+|.++|.++.
T Consensus        16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~--------~~p~~~~~~~~~~G~i~~~g~~~~   74 (272)
T PRK13547         16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD--------LTGGGAPRGARVTGDVTLNGEPLA   74 (272)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCcccccccCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999998        5555        799999987664

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.17  E-value=5.4e-11  Score=75.20  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=61.3

Q ss_pred             EEeCCCCcHHHHHHHHhcCcc--cccCCcccCceEEEEEC----CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           25 FLGLDNAGKTTLLHMLKDERL--VQHQPTQHPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        25 lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~~g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ++|+.|||||||++.+.+...  ....|+. .+...+...    +..+.+||++|.......+..+++.+++++.+++.+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998765  3344554 444444444    678899999999988888888999999999999987


Q ss_pred             Ccccc
Q 033893           99 FRDFY  103 (109)
Q Consensus        99 ~~~~~  103 (109)
                      .....
T Consensus        80 ~~~~~   84 (157)
T cd00882          80 DRESF   84 (157)
T ss_pred             CHHHH
Confidence            65543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.17  E-value=8.2e-12  Score=91.37  Aligned_cols=49  Identities=27%  Similarity=0.443  Sum_probs=45.5

Q ss_pred             HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++|+| +|+|+||||||||++++.+.        +.|+.|+|.++|.++.
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL--------iept~G~ilv~g~di~   93 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--------IEPTRGEILVDGKDIA   93 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhcc--------CCCCCceEEECCcchh
Confidence            5678999999998 99999999999999999999        8899999999998766

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.17  E-value=3.1e-11  Score=83.03  Aligned_cols=58  Identities=24%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893            6 WFYGILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL   71 (109)
Q Consensus         6 ~~~~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~   71 (109)
                      ...++++.++|+.+++. ++++|.||||||||.++++|.        +.|..|+|.+|+..+..-|-
T Consensus        24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm--------i~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167          24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM--------IEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc--------cCCCCceEEECCccccccch
Confidence            34568999999998886 599999999999999999999        99999999999988876664

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.17  E-value=2.2e-11  Score=86.71  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=43.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||++.|+|.        ..     ++.|+|.++|.++.
T Consensus        28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~p~~p~~G~i~~~g~~~~   83 (260)
T PRK10744         28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM--------YELYPEQRAEGEILLDGENIL   83 (260)
T ss_pred             EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cccCCCCCcceEEEECCEEcc
Confidence            68899999999986 99999999999999999997        43     46799999987663

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.16  E-value=2.2e-11  Score=86.45  Aligned_cols=51  Identities=10%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC----ceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP----TSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~----~~g~i~~~~~~i~   67 (109)
                      .+++++++++.+|++ +|+|+||||||||++.|+|.        ..+    +.|+|.++|.++.
T Consensus        17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~G~i~~~g~~i~   72 (254)
T PRK10418         17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI--------LPAGVRQTAGRVLLDGKPVA   72 (254)
T ss_pred             ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCcCCEEEECCeecc
Confidence            368899999999986 99999999999999999998        555    7899999987653

>cd01878 HflX HflX subfamily

Probab=99.16  E-value=1e-10  Score=79.98  Aligned_cols=81  Identities=22%  Similarity=0.229  Sum_probs=59.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-c--ccCCcccCceEEEEECCE-EEEEEEcCCccc---------ccccHHhhhhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-V--QHQPTQHPTSEELSIGKI-KFKAFDLGGHQI---------ARRVWKDYYAK   87 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~--~~~pt~~~~~g~i~~~~~-~i~~~d~~g~~~---------~r~~~~~~~~~   87 (109)
                      .+|+|+|++|||||||++.+.+.++ .  ...||..+..+.+.+++. .+.+||.+|...         ++..+ ..+.+
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~  120 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAE  120 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhc
Confidence            4789999999999999999998763 2  234556666677777664 889999999632         22222 23668


Q ss_pred             CCEEEEEEeCCCccc
Q 033893           88 VIGSFKTKKIEFRDF  102 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~  102 (109)
                      +++++.+.|.+...+
T Consensus       121 ~d~ii~v~D~~~~~~  135 (204)
T cd01878         121 ADLLLHVVDASDPDY  135 (204)
T ss_pred             CCeEEEEEECCCCCh
Confidence            999999998876543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=3e-11  Score=85.60  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~   67 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|+|.        ..+     +.|+|.++|.++.
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273         22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM--------NDLVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccCCcCCCCceEEEECCEecc
Confidence            68899999999986 99999999999999999998        443     4799999987653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.16  E-value=2.5e-11  Score=85.41  Aligned_cols=50  Identities=22%  Similarity=0.372  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++.+|++ +|+|+||||||||++.|+|.        ..+..|+|.++|.++.
T Consensus        15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~i~g~~~~   65 (237)
T TIGR00968        15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL--------EQPDSGRIRLNGQDAT   65 (237)
T ss_pred             eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcC
Confidence            68899999999986 99999999999999999998        7778899999987654

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.16  E-value=4.2e-10  Score=79.32  Aligned_cols=80  Identities=18%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc--c-cCCcccCceEEEEECCEEEEEEEcCCccccc----c---cHHhhhhcCCE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQHPTSEELSIGKIKFKAFDLGGHQIAR----R---VWKDYYAKVIG   90 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~-~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r----~---~~~~~~~~~~~   90 (109)
                      ++++|+|++|||||||+++|.+....  . ..+|..+..|.+.+++..+.+||++|.....    .   ....+++++++
T Consensus         1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~   80 (233)
T cd01896           1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL   80 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence            47899999999999999999987531  1 2234556789999999999999999864322    1   22457889999


Q ss_pred             EEEEEeCCCc
Q 033893           91 SFKTKKIEFR  100 (109)
Q Consensus        91 ~v~~~~~~~~  100 (109)
                      ++.+.+.+..
T Consensus        81 il~V~D~t~~   90 (233)
T cd01896          81 ILMVLDATKP   90 (233)
T ss_pred             EEEEecCCcc
Confidence            9999987543

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.16  E-value=1.9e-11  Score=87.41  Aligned_cols=50  Identities=20%  Similarity=0.316  Sum_probs=43.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|+++++.+++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM--------NDTIDGCRVTGKITLDGEDIY   89 (267)
T ss_pred             EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cccccCCCCceEEEECCEECc
Confidence            57899999999986 99999999999999999997        43     36899999987654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.16  E-value=2.3e-11  Score=87.10  Aligned_cols=51  Identities=24%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|..+.
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~sG~i~~~g~~~~   77 (268)
T PRK10419         26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL--------ESPSQGNVSWRGEPLA   77 (268)
T ss_pred             eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence            368999999999986 99999999999999999998        6778899999987654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.15  E-value=2.4e-11  Score=93.58  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~   69 (501)
T PRK10762         19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI--------YTRDAGSILYLGKEVT   69 (501)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788999999987653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.15  E-value=2.9e-11  Score=85.99  Aligned_cols=49  Identities=18%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i   66 (109)
                      +|+++++++++|++ +|+|+||||||||++.|+|.        ..     ++.|+|.++|.++
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl--------~~~~~~~~~~G~I~~~g~~~   73 (258)
T PRK14241         19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM--------HEVIPGARVEGEVLLDGEDL   73 (258)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------CCcccCCCcceEEEECCEec
Confidence            68899999999986 99999999999999999997        43     3589999998765

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.15  E-value=4.9e-11  Score=82.59  Aligned_cols=50  Identities=22%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++.++++++.+++. +++||||||||||++.++|.        ..|..|+|.+++..+.
T Consensus        20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf--------~~P~~G~i~l~~r~i~   70 (259)
T COG4525          20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF--------VTPSRGSIQLNGRRIE   70 (259)
T ss_pred             hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC--------cCcccceEEECCEecc
Confidence            78999999999985 99999999999999999999        8999999999998776

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.15  E-value=2.3e-11  Score=81.54  Aligned_cols=46  Identities=22%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++++++++++ +|+|+||||||||++++.|.        ..++.|+|.+++
T Consensus        16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~~   62 (166)
T cd03223          16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL--------WPWGSGRIGMPE   62 (166)
T ss_pred             eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECC
Confidence            67899999999986 99999999999999999998        777889998876

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.15  E-value=3.3e-11  Score=83.43  Aligned_cols=50  Identities=22%  Similarity=0.381  Sum_probs=44.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+.+++++++++++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++.
T Consensus        13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   63 (213)
T TIGR01277        13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--------IEPASGSIKVNDQSHT   63 (213)
T ss_pred             cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEcc
Confidence            34688999999986 99999999999999999998        7888999999987653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3e-11  Score=85.93  Aligned_cols=50  Identities=16%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|..+.
T Consensus        27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--------~~~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM--------NDLIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCcccCCCcceEEEECCEEcc
Confidence            68899999999986 99999999999999999997        43     36899999987664

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=1.7e-11  Score=92.50  Aligned_cols=50  Identities=24%  Similarity=0.424  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl--------~~p~sG~I~i~G~~i~   93 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--------IEPTRGQVLIDGVDIA   93 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC--------CCCCCCEEEECCEECC
Confidence            57889999999986 99999999999999999999        7888999999998664

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.15  E-value=2.4e-11  Score=93.79  Aligned_cols=50  Identities=32%  Similarity=0.523  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~i~   70 (510)
T PRK09700         20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--------HEPTKGTITINNINYN   70 (510)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------cCCCccEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788899999987654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=2.5e-11  Score=87.32  Aligned_cols=50  Identities=12%  Similarity=0.175  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++.+|++ +|+|+||||||||+++|+|.        ..+..|+|.++|.++.
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~i~   72 (277)
T PRK13642         22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--------FEEFEGKVKIDGELLT   72 (277)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCCEEEECCEECC
Confidence            78999999999986 99999999999999999999        7788999999987653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.1e-11  Score=86.32  Aligned_cols=55  Identities=13%  Similarity=0.253  Sum_probs=43.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|+|....  .| ..++.|+|.++|.++.
T Consensus        36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~i~~~g~~i~   91 (268)
T PRK14248         36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL--IP-SARSEGEILYEGLNIL   91 (268)
T ss_pred             eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc--cC-CCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999996100  00 0156799999987664

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.15  E-value=3.6e-11  Score=82.67  Aligned_cols=52  Identities=21%  Similarity=0.296  Sum_probs=43.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++.+|++ +|+|+||||||||++.|+|...      ..++.|+|.++|.++.
T Consensus        15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~p~~G~i~~~g~~~~   67 (200)
T cd03217          15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK------YEVTEGEILFKGEDIT   67 (200)
T ss_pred             eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc------CCCCccEEEECCEECC
Confidence            67899999999986 9999999999999999999710      1467899999987654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.15  E-value=2.5e-11  Score=89.60  Aligned_cols=51  Identities=16%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl--------~~p~~G~I~~~G~~i~   86 (331)
T PRK15079         35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL--------VKATDGEVAWLGKDLL   86 (331)
T ss_pred             EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--------CCCCCcEEEECCEECC
Confidence            478999999999986 99999999999999999998        7778899999998764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=2.6e-11  Score=88.59  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .+|+++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.+.
T Consensus        21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl--------~~p~~G~i~~~g~~~   71 (305)
T PRK13651         21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--------LLPDTGTIEWIFKDE   71 (305)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEEeceec
Confidence            378999999999985 99999999999999999998        778889999987644

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=3.4e-11  Score=85.10  Aligned_cols=50  Identities=16%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--------~~~~~~~~~~G~i~i~g~~~~   73 (250)
T PRK14262         18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--------NDHIPGFRVEGKIYFKGQDIY   73 (250)
T ss_pred             eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc--------ccCCCCCCcceEEEECCEEcc
Confidence            67899999999986 99999999999999999997        43     26799999987654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.14  E-value=2.3e-11  Score=84.63  Aligned_cols=45  Identities=27%  Similarity=0.361  Sum_probs=41.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      ++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~   68 (224)
T TIGR02324        23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN--------YLPDSGRILVR   68 (224)
T ss_pred             EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEEe
Confidence            68999999999986 99999999999999999998        77778998886

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.14  E-value=1.5e-11  Score=87.37  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|.+++|++ +++|+|||||||.+|+|.+.        ..++.|+|.++|.++.
T Consensus        16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl--------le~~~G~I~~~g~~~~   67 (300)
T COG4152          16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--------LEPTEGEITWNGGPLS   67 (300)
T ss_pred             eeecceeeeecCCeEEEeecCCCCCccchHHHHhcc--------CCccCceEEEcCcchh
Confidence            478999999999998 99999999999999999999        8899999999997665

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.14  E-value=2.8e-11  Score=89.19  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=46.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl--------~~p~~G~i~~~g~~l~   80 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--------ETPTGGELYYQGQDLL   80 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC--------CCCCCcEEEECCEEcC
Confidence            478999999999986 99999999999999999998        6677899999998664

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.14  E-value=3.1e-11  Score=82.52  Aligned_cols=51  Identities=25%  Similarity=0.388  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++++++++++ +|+|+||||||||++.|+|...      ..++.|++.+++.++
T Consensus        22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~------~~~~~G~i~~~g~~~   73 (192)
T cd03232          22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT------AGVITGEILINGRPL   73 (192)
T ss_pred             eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc------CCCcceEEEECCEeh
Confidence            68899999999986 9999999999999999998610      135789999988765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.14  E-value=4.8e-10  Score=74.84  Aligned_cols=78  Identities=15%  Similarity=-0.000  Sum_probs=60.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccC-------------------CcccCceEEEEECCEEEEEEEcCCcccccccHH
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQ-------------------PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~-------------------pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~   82 (109)
                      +|+++|..|||||||++.+.+.......                   .+.......+..++..+.++|++|...++..+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            3789999999999999999877543211                   122223344556678899999999998888899


Q ss_pred             hhhhcCCEEEEEEeCCC
Q 033893           83 DYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~~   99 (109)
                      .+++++++++.+.+.+.
T Consensus        81 ~~~~~~d~~i~v~d~~~   97 (189)
T cd00881          81 RGLSVSDGAILVVDANE   97 (189)
T ss_pred             HHHHhcCEEEEEEECCC
Confidence            99999999999988754

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.14  E-value=3.4e-11  Score=86.35  Aligned_cols=51  Identities=18%  Similarity=0.242  Sum_probs=44.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      .+|+++++++++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--------~~~~~~~~~~G~i~~~g~~~~   94 (271)
T PRK14238         38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM--------VELVPSVKTTGKILYRDQNIF   94 (271)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------ccCCCCCCCceeEEECCEEcc
Confidence            367899999999986 99999999999999999997        43     47899999987653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.14  E-value=3.9e-11  Score=84.80  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=43.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|....  .|+ .++.|+|.++|.++.
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~~-~~~~G~i~~~g~~~~   73 (250)
T PRK14240         17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL--IPS-VKIEGEVLLDGQDIY   73 (250)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--cCC-CCCceEEEECCEEcc
Confidence            368899999999986 99999999999999999996110  010 125799999987664

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.14  E-value=3.6e-11  Score=86.02  Aligned_cols=50  Identities=18%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|.|.        ..     ++.|+|.++|.++.
T Consensus        35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~~~   90 (267)
T PRK14237         35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM--------NDTIDIARVTGQILYRGIDIN   90 (267)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------cCccCCCCcceEEEECCEEcc
Confidence            67899999999986 99999999999999999997        43     46899999987664

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.13  E-value=3.9e-11  Score=84.28  Aligned_cols=50  Identities=20%  Similarity=0.310  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~--------~~p~~G~v~i~g~~~~   64 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--------IKPDSGKILLNGKDIT   64 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCEEcC
Confidence            68899999999986 99999999999999999998        7788899999987654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.13  E-value=3.2e-11  Score=90.04  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCce--EEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS--EELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~--g~i~~~~~~i~   67 (109)
                      +|++++++++++++ +|+|+||||||||+++|+|.        ..++.  |+|.++|.++.
T Consensus        20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~p~~~~G~i~~~g~~~~   72 (362)
T TIGR03258        20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF--------VKAAGLTGRIAIADRDLT   72 (362)
T ss_pred             EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCEEEEECCEECC
Confidence            67899999999986 99999999999999999998        77888  99999997653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.13  E-value=3.9e-11  Score=84.76  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=43.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc---cCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ---HPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~---~~~~g~i~~~~~~i~   67 (109)
                      +|++++++++++++ +|+|+||||||||+++|+|.        .   .++.|+|.++|.++.
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~G~i~~~g~~i~   70 (246)
T PRK14269         17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM--------NDKIAKIDGLVEIEGKDVK   70 (246)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCCceEEEECCEecc
Confidence            68899999999986 99999999999999999997        4   256899999998664

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.13  E-value=1.2e-10  Score=77.10  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=56.4

Q ss_pred             EEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEEC-CEEEEEEEcCCccc----ccccH---HhhhhcCCEEEE
Q 033893           25 FLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIG-KIKFKAFDLGGHQI----ARRVW---KDYYAKVIGSFK   93 (109)
Q Consensus        25 lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~-~~~i~~~d~~g~~~----~r~~~---~~~~~~~~~~v~   93 (109)
                      ++|++|||||||+++|.+.+.  .. ..+|..+..+.+.++ +..+.+||++|...    .+.++   ..+++++++++.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            589999999999999998763  22 234556777888888 89999999999632    23333   345678999999


Q ss_pred             EEeCCCc
Q 033893           94 TKKIEFR  100 (109)
Q Consensus        94 ~~~~~~~  100 (109)
                      +.+.+..
T Consensus        81 v~d~~~~   87 (176)
T cd01881          81 VVDASED   87 (176)
T ss_pred             EEeccCC
Confidence            9887654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.13  E-value=3.8e-11  Score=92.67  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=44.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~p~~G~I~~~g~~~  327 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV--------DKRAGGEIRLNGKDI  327 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CcCCCCeEEECCEEC
Confidence            68999999999986 99999999999999999998        778889999988765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.13  E-value=4.3e-11  Score=84.65  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=43.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      .+|+++++++++|++ +|+|+||||||||+++|+|.        ..     +..|+|.++|.++.
T Consensus        18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~p~~~~~G~v~i~g~~~~   74 (251)
T PRK14251         18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM--------NDDIENIKITGEIKFEGQNIY   74 (251)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--------cccccCCCcceEEEECCEEcc
Confidence            367899999999986 99999999999999999998        43     35799999987653

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.13  E-value=3.4e-11  Score=85.69  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.++++++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~i~g~~i~   86 (257)
T cd03288          36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM--------VDIFDGKIVIDGIDIS   86 (257)
T ss_pred             ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--------cCCCCCeEEECCEEhh
Confidence            68899999999986 99999999999999999998        7788899999987654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.13  E-value=3.2e-11  Score=85.81  Aligned_cols=46  Identities=28%  Similarity=0.398  Sum_probs=42.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.+++
T Consensus        19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--------~~p~~G~i~~~~   65 (251)
T PRK09544         19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL--------VAPDEGVIKRNG   65 (251)
T ss_pred             EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECC
Confidence            67899999999986 99999999999999999998        778889998876

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.13  E-value=3.7e-11  Score=88.53  Aligned_cols=55  Identities=13%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|..-    |...++.|+|.++|.++.
T Consensus        21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~----~~~~~~~G~i~~~g~~i~   76 (330)
T PRK15093         21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK----DNWRVTADRMRFDDIDLL   76 (330)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC----CCCCCcceEEEECCEECC
Confidence            368999999999986 9999999999999999999821    001246799999998664

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=5e-11  Score=83.50  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=42.7

Q ss_pred             HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+++|++++|++ +|+|+||||||||++.|+|.        ..++.|+|.+++.++.
T Consensus        16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~   64 (232)
T PRK10771         16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF--------LTPASGSLTLNGQDHT   64 (232)
T ss_pred             ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCeecC
Confidence            378999999986 99999999999999999998        7788899999987654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=3.4e-11  Score=88.67  Aligned_cols=55  Identities=11%  Similarity=0.095  Sum_probs=44.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++++|++ +|+|+||||||||+++|.|..-    |.-.++.|+|.++|.++.
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~----~~~~~~~G~i~~~G~~i~   76 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID----YPGRVMAEKLEFNGQDLQ   76 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC----CCCCCcceEEEECCEECC
Confidence            378999999999996 9999999999999999999711    101146799999998654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=3.9e-11  Score=86.56  Aligned_cols=50  Identities=14%  Similarity=0.344  Sum_probs=44.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCce---EEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS---EELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~---g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..++.   |+|.++|.++.
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~--------~~p~~g~~G~i~i~g~~~~   75 (282)
T PRK13640         22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--------LLPDDNPNSKITVDGITLT   75 (282)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--------cCCCCCCCcEEEECCEECC
Confidence            78999999999986 99999999999999999998        66655   89999887653

>cd01890 LepA LepA subfamily

Probab=99.13  E-value=2.5e-10  Score=76.12  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=57.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCc-------c-cccCCcc------cC--ce--EEEEE-----CCEEEEEEEcCCccccc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDER-------L-VQHQPTQ------HP--TS--EELSI-----GKIKFKAFDLGGHQIAR   78 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~-------~-~~~~pt~------~~--~~--g~i~~-----~~~~i~~~d~~g~~~~r   78 (109)
                      .|+++|..|+|||||++++.+..       + ....|+.      +.  ..  ..+.+     .+..+.+||++|+++++
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            37999999999999999998631       1 1122221      11  11  12222     34678899999999999


Q ss_pred             ccHHhhhhcCCEEEEEEeCCCc
Q 033893           79 RVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        79 ~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      ..+..+++.+++++.++|.+..
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~  103 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQG  103 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCC
Confidence            9999999999999999998654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.12  E-value=3.4e-11  Score=86.23  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      .++++|||.++++++ +|+|+|||||||+-+.+.+.        ..|+.|+|.++|.++..
T Consensus        27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L--------~~pt~G~i~f~g~~i~~   79 (268)
T COG4608          27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL--------EEPTSGEILFEGKDITK   79 (268)
T ss_pred             EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC--------cCCCCceEEEcCcchhh
Confidence            578999999999997 99999999999999999999        88999999999987653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.12  E-value=3.6e-11  Score=92.94  Aligned_cols=50  Identities=26%  Similarity=0.422  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   76 (510)
T PRK15439         26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--------VPPDSGTLEIGGNPCA   76 (510)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788999999887653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.5e-11  Score=84.62  Aligned_cols=55  Identities=22%  Similarity=0.242  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|+|....  .| ..+..|+|.++|.++.
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~-~~~~~G~i~~~g~~i~   74 (251)
T PRK14270         19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDL--IS-NVKIEGEVLLDGKNIY   74 (251)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc--cc-CCCCccEEEECCEecc
Confidence            67899999999986 99999999999999999997110  00 0125799999987663

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.12  E-value=5.4e-11  Score=81.40  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=41.3

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +++|+++++++ +|+|+||||||||+++|+|.        ..++.|++.+++.++
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i   64 (195)
T PRK13541         18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGI--------MQPSSGNIYYKNCNI   64 (195)
T ss_pred             EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCccc
Confidence            48899999986 99999999999999999998        778889999988755

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.12  E-value=3.9e-11  Score=92.76  Aligned_cols=50  Identities=24%  Similarity=0.413  Sum_probs=46.4

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|.++.
T Consensus       350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--------~~p~~G~I~i~g~~i~  400 (529)
T TIGR02868       350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL--------LDPLQGEVTLDGVSVS  400 (529)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEhh
Confidence            7899999999998 599999999999999999998        8889999999998776

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=5.8e-11  Score=83.93  Aligned_cols=50  Identities=14%  Similarity=0.257  Sum_probs=42.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~   67 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|+|.        ..+     +.|+|.++|.++.
T Consensus        19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~~~   74 (252)
T PRK14272         19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM--------HDLTPGARVTGRILLDGQDIY   74 (252)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCcCCCCceeEEECCEEcc
Confidence            67899999999986 99999999999999999997        433     3699999887654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.12  E-value=5.1e-11  Score=84.86  Aligned_cols=50  Identities=20%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~   67 (109)
                      ++++++|++.+|++ +|+|+||||||||+++|+|.        ..++   .|+|.++|.++.
T Consensus        19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~p~~~~~G~i~~~g~~~~   72 (262)
T PRK09984         19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL--------ITGDKSAGSHIELLGRTVQ   72 (262)
T ss_pred             EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------CCCCCCCceEEEECCEecc
Confidence            67899999999986 99999999999999999998        5543   499999997664

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.9e-11  Score=86.23  Aligned_cols=50  Identities=18%  Similarity=0.286  Sum_probs=43.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|..+.
T Consensus        54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~~~~p~~G~I~i~G~~i~  109 (285)
T PRK14254         54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM--------NDLIDAARVEGELTFRGKNVY  109 (285)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCcccCCCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999998        43     56899999987653

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.12  E-value=4.2e-11  Score=84.43  Aligned_cols=50  Identities=22%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~~~~i~   67 (109)
                      +++++++.++++++ +|+|+||||||||+++|+|.        .  .++.|+|.+++.++.
T Consensus        16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~G~i~~~g~~~~   68 (248)
T PRK09580         16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR--------EDYEVTGGTVEFKGKDLL   68 (248)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--------ccCCCCceEEEECCCccc
Confidence            68899999999986 99999999999999999997        4  367899999886543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.4e-11  Score=91.93  Aligned_cols=50  Identities=24%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   63 (491)
T PRK10982         13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI--------YQKDSGSILFQGKEID   63 (491)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCceEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788999999987653

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.12  E-value=7e-11  Score=90.56  Aligned_cols=82  Identities=9%  Similarity=0.110  Sum_probs=61.4

Q ss_pred             HHHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceE-EEEECCEEEEEEEcCCcccccccHHh
Q 033893            6 WFYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE-ELSIGKIKFKAFDLGGHQIARRVWKD   83 (109)
Q Consensus         6 ~~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g-~i~~~~~~i~~~d~~g~~~~r~~~~~   83 (109)
                      -+..+|+++++++++|++ +|+|+|||||||||+  .+.        ..++.| +|.++|.++...+-...+..|.+++.
T Consensus        17 ~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l--------~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~   86 (504)
T TIGR03238        17 DLERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENK--------RKFSEGYEFFLDATHSFSPNKNAMETLDEIFDG   86 (504)
T ss_pred             HHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCC--------CCCCCCCEEEECCEECCCCCHHHHHHHHHHHHh
Confidence            356789999999999996 999999999999999  444        344555 79999988763333334456778888


Q ss_pred             hhhcCCEEEEEEeC
Q 033893           84 YYAKVIGSFKTKKI   97 (109)
Q Consensus        84 ~~~~~~~~v~~~~~   97 (109)
                      |-++...+++-..+
T Consensus        87 fn~~~~~lIvaINl  100 (504)
T TIGR03238        87 FNQSNKPLIVGINM  100 (504)
T ss_pred             hhcCCCCEEEEEeh
Confidence            87777777765443

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK15494 era GTPase Era; Provisional

Probab=99.11  E-value=7.2e-10  Score=82.07  Aligned_cols=78  Identities=17%  Similarity=0.120  Sum_probs=57.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccc----cCCcccCceEEEEECCEEEEEEEcCCccc-ccccH-------HhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQHPTSEELSIGKIKFKAFDLGGHQI-ARRVW-------KDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~----~~pt~~~~~g~i~~~~~~i~~~d~~g~~~-~r~~~-------~~~~~~~   88 (109)
                      .+|+++|.+|+|||||++.+.+.++..    ..+|.....+.+..++..+.+||++|... ...+-       ..++.++
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~a  132 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSA  132 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhC
Confidence            368999999999999999999887642    23344455677888899999999999742 22211       1346789


Q ss_pred             CEEEEEEeCC
Q 033893           89 IGSFKTKKIE   98 (109)
Q Consensus        89 ~~~v~~~~~~   98 (109)
                      |+++++.+-+
T Consensus       133 Dvil~VvD~~  142 (339)
T PRK15494        133 DLVLLIIDSL  142 (339)
T ss_pred             CEEEEEEECC
Confidence            9999888743

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.11  E-value=5.8e-11  Score=84.15  Aligned_cols=49  Identities=22%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        .. ..|+|.++|.++.
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl--------~~-~~G~i~~~g~~i~   60 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL--------LP-GSGSIQFAGQPLE   60 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CC-CCeEEEECCEecC
Confidence            67899999999997 99999999999999999998        53 3799999987654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.11  E-value=4.1e-11  Score=85.92  Aligned_cols=47  Identities=21%  Similarity=0.360  Sum_probs=42.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.
T Consensus        39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl--------~~p~~G~I~~~g~   86 (264)
T PRK13546         39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS--------LSPTVGKVDRNGE   86 (264)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCE
Confidence            57889999999986 99999999999999999998        7788899999884

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.11  E-value=6e-11  Score=83.81  Aligned_cols=49  Identities=22%  Similarity=0.339  Sum_probs=42.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i   66 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|+|.        ..     ++.|++.++|.++
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~~   72 (249)
T PRK14253         18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM--------NDLIEGVKITGKLTMDGEDI   72 (249)
T ss_pred             eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh--------cccccCCCCceEEEECCEEc
Confidence            68899999999986 99999999999999999997        33     3579999998765

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.11  E-value=5.9e-11  Score=83.92  Aligned_cols=52  Identities=19%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|...      ..++.|+|.+++.++.
T Consensus        22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~------~~~~~G~i~~~g~~~~   74 (252)
T CHL00131         22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA------YKILEGDILFKGESIL   74 (252)
T ss_pred             eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc------CcCCCceEEECCEEcc
Confidence            68899999999986 9999999999999999999610      2456799999887654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.11  E-value=4.5e-11  Score=88.18  Aligned_cols=51  Identities=10%  Similarity=0.094  Sum_probs=44.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|.        ..++   .|+|.++|.++.
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl--------~~p~~~~sG~I~~~G~~i~   84 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL--------LAANGRIGGSATFNGREIL   84 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC--------CCCCCCCCeEEEECCEECC
Confidence            368899999999986 99999999999999999998        5553   799999998765

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.11  E-value=4.7e-11  Score=91.70  Aligned_cols=50  Identities=22%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .+|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++
T Consensus        17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~--------~~p~~G~i~~~~~~~   67 (490)
T PRK10938         17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE--------LPLLSGERQSQFSHI   67 (490)
T ss_pred             eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCceEEECCccc
Confidence            378999999999986 99999999999999999998        778889998877554

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.11  E-value=3.8e-11  Score=90.21  Aligned_cols=47  Identities=21%  Similarity=0.308  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      ++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.
T Consensus        39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl--------~~p~~G~I~idG~   86 (382)
T TIGR03415        39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL--------NPVSRGSVLVKDG   86 (382)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEECCE
Confidence            47889999999997 99999999999999999998        7888999999985

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=7e-11  Score=93.43  Aligned_cols=54  Identities=19%  Similarity=0.361  Sum_probs=49.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      .+|++++|++++|++ ++|||||+||||+...|...        ..|..|+|.+||+++.-+|
T Consensus       482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf--------Y~PtsG~IllDG~~i~~~~  536 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF--------YDPTSGRILLDGVPISDIN  536 (716)
T ss_pred             hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh--------cCCCCCeEEECCeehhhcC
Confidence            478999999999996 99999999999999999988        8889999999999988544

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=6e-11  Score=84.00  Aligned_cols=50  Identities=12%  Similarity=0.256  Sum_probs=43.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~i~   74 (252)
T PRK14256         19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM--------HDLVPSARVTGKILLDDTDIY   74 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------ccCCCCCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999997        42     25799999987654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=6.4e-11  Score=91.38  Aligned_cols=50  Identities=22%  Similarity=0.302  Sum_probs=44.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i~   67 (109)
                      +|++++|++.+|++ +|+|+||||||||+++|+|.        ..+  +.|+|.++|.++.
T Consensus        20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~~~G~i~~~g~~~~   72 (506)
T PRK13549         20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV--------YPHGTYEGEIIFEGEELQ   72 (506)
T ss_pred             eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCeEEEECCEECC
Confidence            68999999999986 99999999999999999998        554  6899999987653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=4.9e-11  Score=84.81  Aligned_cols=50  Identities=20%  Similarity=0.325  Sum_probs=43.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc--C---ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH--P---TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~--~---~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..  +   +.|+|.++|.++.
T Consensus        27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~p~~~~~G~i~~~g~~~~   82 (259)
T PRK14274         27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM--------IQMVPNVKLTGEMNYNGSNIL   82 (259)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------ccCCCCCCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999997        33  2   4799999987664

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.10  E-value=1.1e-10  Score=80.88  Aligned_cols=46  Identities=20%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++ ++ +|+|+||||||||++.|.|.        ..++.|+|.++|.++.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~   62 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL--------EKPDGGTIVLNGTVLF   62 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEecc
Confidence            88899988 86 99999999999999999998        7788899999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.10  E-value=3.6e-10  Score=83.65  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEE-CCEEEEEEEcCCccc----cccc---HHhhhhcCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSI-GKIKFKAFDLGGHQI----ARRV---WKDYYAKVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~-~~~~i~~~d~~g~~~----~r~~---~~~~~~~~~~   90 (109)
                      .|+|+|.++||||||+++|++.+.  .. ..+|..|..|.+.+ ++.++.+||++|.-+    .+.+   |-.++.++++
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v  239 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL  239 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence            589999999999999999997642  22 23567788899988 567899999998632    1223   3345567999


Q ss_pred             EEEEEeCCCcc
Q 033893           91 SFKTKKIEFRD  101 (109)
Q Consensus        91 ~v~~~~~~~~~  101 (109)
                      ++.+.|.+...
T Consensus       240 lI~ViD~s~~~  250 (335)
T PRK12299        240 LLHLVDIEAVD  250 (335)
T ss_pred             EEEEEcCCCCC
Confidence            99999987543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.10  E-value=5.5e-11  Score=86.07  Aligned_cols=47  Identities=21%  Similarity=0.392  Sum_probs=42.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      .+|+++++.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++
T Consensus        51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl--------~~p~~G~I~i~g   98 (282)
T cd03291          51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE--------LEPSEGKIKHSG   98 (282)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECC
Confidence            378899999999986 99999999999999999998        778889999887

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.10  E-value=6.8e-11  Score=84.48  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|+|.        ..     ++.|+|.+++.++.
T Consensus        25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~i~   80 (264)
T PRK14243         25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL--------NDLIPGFRVEGKVTFHGKNLY   80 (264)
T ss_pred             EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------hcccCCCCCceEEEECCEEcc
Confidence            67899999999986 99999999999999999987        32     36799999987653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=4.8e-11  Score=81.73  Aligned_cols=50  Identities=24%  Similarity=0.330  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++.+++|++..+++ .|.|+||||||||||+++|.        ..|+.|+|.+++..+.
T Consensus        17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL--------l~p~~G~v~~~~~~i~   67 (209)
T COG4133          17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--------LRPDAGEVYWQGEPIQ   67 (209)
T ss_pred             eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc--------cCCCCCeEEecCCCCc
Confidence            46789999999996 99999999999999999999        8999999999876554

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=5.9e-11  Score=83.99  Aligned_cols=50  Identities=26%  Similarity=0.380  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++|++.+|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~i~   75 (251)
T PRK14244         20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM--------NDFVPNCKVKGELDIDGIDVY   75 (251)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cccCCCCCcceEEEECCEehH
Confidence            67899999999986 99999999999999999997        32     35799999887653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.09  E-value=9.1e-11  Score=87.19  Aligned_cols=47  Identities=17%  Similarity=0.293  Sum_probs=42.6

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl--------~~p~~G~I~~~g~~i~   62 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL--------TRPDEGEIVLNGRTLF   62 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECc
Confidence            78899999986 99999999999999999998        7788999999997664

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.09  E-value=7.6e-11  Score=90.86  Aligned_cols=50  Identities=20%  Similarity=0.222  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~--------~~p~~G~I~~~g~~i~  317 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA--------LPRTSGYVTLDGHEVV  317 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence            47899999999986 99999999999999999998        7788899999987653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=7.8e-11  Score=83.38  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=43.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc-----eEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-----SEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-----~g~i~~~~~~i~   67 (109)
                      ++++++|++.+|++ +|+|+||||||||++.|+|.        ..++     .|+|.++|.++.
T Consensus        19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~~~   74 (251)
T PRK14249         19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM--------NDIVSGARLEGAVLLDNENIY   74 (251)
T ss_pred             EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCccccCCcccEEEECCEEcc
Confidence            68899999999986 99999999999999999998        4443     699999887654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=6.3e-11  Score=85.66  Aligned_cols=55  Identities=15%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+.+|++ +|+|+||||||||+++|.|..-  ..| ..++.|+|.++|.++.
T Consensus        54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--~~p-~~~~~G~I~~~g~~i~  109 (286)
T PRK14275         54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND--LIP-SCHTTGALMFDGEDIY  109 (286)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--cCC-CCCCceEEEECCEEhh
Confidence            67899999999986 9999999999999999999610  000 0037899999987653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.09  E-value=6e-11  Score=81.30  Aligned_cols=45  Identities=31%  Similarity=0.462  Sum_probs=39.4

Q ss_pred             CCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++.++.+++ +|+|+||||||||++.++|.        ..|..|+|.++|++..
T Consensus        19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF--------~~P~~G~i~i~g~d~t   64 (231)
T COG3840          19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGF--------ETPASGEILINGVDHT   64 (231)
T ss_pred             EEeecCCcEEEEECCCCccHHHHHHHHHhc--------cCCCCceEEEcCeecC
Confidence            345677775 99999999999999999998        8889999999998766

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.09  E-value=7.1e-11  Score=91.02  Aligned_cols=50  Identities=16%  Similarity=0.318  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~--------~~p~~G~i~~~g~~~~  318 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA--------TRRTAGQVYLDGKPID  318 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC--------CcCCCceEEECCEECC
Confidence            67899999999986 99999999999999999998        7788899999887653

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.09  E-value=7.9e-11  Score=77.92  Aligned_cols=50  Identities=30%  Similarity=0.419  Sum_probs=43.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|.|.        ..++.|++.+++..+.
T Consensus        14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~--------~~~~~G~i~~~~~~~~   64 (157)
T cd00267          14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--------LKPTSGEILIDGKDIA   64 (157)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCEEcc
Confidence            57888999999886 99999999999999999998        7778899999886543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=7.3e-11  Score=84.29  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|.|.        ..     ++.|+|.++|.++.
T Consensus        23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~~~~~~G~i~~~g~~i~   78 (261)
T PRK14263         23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM--------NDLVKGFRFEGHVHFLGQDVY   78 (261)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--------cccccCCCCceEEEECCEecc
Confidence            67899999999986 99999999999999999998        33     26799999998664

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=8.8e-11  Score=83.20  Aligned_cols=55  Identities=15%  Similarity=0.235  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|..-.  .|+ .++.|+|.++|.++.
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~~-~~~~G~i~~~g~~~~   76 (253)
T PRK14261         21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL--IPG-CRITGDILYNGENIM   76 (253)
T ss_pred             eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC--CCC-CCcceEEEECCEEcc
Confidence            68899999999986 99999999999999999987110  010 124799999987664

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.08  E-value=9.2e-11  Score=90.49  Aligned_cols=51  Identities=22%  Similarity=0.201  Sum_probs=45.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-CceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-PTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|.        .. ++.|+|.++|.++.
T Consensus       276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~~~~~G~i~~~g~~~~  328 (506)
T PRK13549        276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA--------YPGRWEGEIFIDGKPVK  328 (506)
T ss_pred             ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC--------CCCCCCcEEEECCEECC
Confidence            378999999999986 99999999999999999998        66 47899999987653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.08  E-value=6.4e-11  Score=91.28  Aligned_cols=50  Identities=22%  Similarity=0.442  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++.++.
T Consensus        19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~i~   69 (501)
T PRK11288         19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN--------YQPDAGSILIDGQEMR   69 (501)
T ss_pred             EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEECC
Confidence            67899999999986 99999999999999999998        7788899999887653

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.08  E-value=6e-11  Score=94.85  Aligned_cols=55  Identities=24%  Similarity=0.419  Sum_probs=49.8

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL   71 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~   71 (109)
                      .+|+++++++++|+ |+|+|.||||||||+|.+.|.        ..|..|+|.+||+++...|.
T Consensus       487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl--------y~p~~G~I~~dg~dl~~i~~  542 (709)
T COG2274         487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL--------YKPQQGRILLDGVDLNDIDL  542 (709)
T ss_pred             chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEeHHhcCH
Confidence            47899999999997 699999999999999999999        88899999999999885553

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.08  E-value=6.7e-11  Score=93.46  Aligned_cols=51  Identities=12%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl--------~~p~~G~I~~~g~~i~  389 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL--------VESQGGEIIFNGQRID  389 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCcEEEECCEECC
Confidence            378999999999986 99999999999999999998        7788899999988664

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.08  E-value=1.1e-10  Score=86.68  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl--------~~p~~G~I~~~g~~~~   63 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL--------TRPQKGRIVLNGRVLF   63 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence            68899999986 99999999999999999998        7888999999987654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.08  E-value=9e-11  Score=82.98  Aligned_cols=54  Identities=20%  Similarity=0.243  Sum_probs=42.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|...  ..|. .++.|+|.++|.++
T Consensus        20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~p~-~~~~G~i~~~g~~~   74 (252)
T PRK14239         20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND--LNPE-VTITGSIVYNGHNI   74 (252)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc--cCCC-CCccceEEECCEEC
Confidence            67899999999986 9999999999999999998610  0010 11479999988765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=9.8e-11  Score=84.29  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++|+++++++ +|+|+||||||||+++|.|.        ..     ++.|+|.+++..+.
T Consensus        36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--------NDKVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------CCcCCCCCCceEEEECCEEcc
Confidence            57899999999986 99999999999999999997        43     36899999987654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.08  E-value=7e-11  Score=93.98  Aligned_cols=54  Identities=24%  Similarity=0.355  Sum_probs=48.7

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      .+|+++++++++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|.++..++
T Consensus       467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--------~~p~~G~I~idg~~i~~~~  521 (686)
T TIGR03797       467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF--------ETPESGSVFYDGQDLAGLD  521 (686)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEEcCcCC
Confidence            37899999999987 599999999999999999999        8889999999999887444

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.07  E-value=1.1e-10  Score=89.79  Aligned_cols=50  Identities=18%  Similarity=0.161  Sum_probs=44.5

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-ceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-TSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-~~g~i~~~~~~i   66 (109)
                      .++++++|++.+|++ +|+|+||||||||+++|+|.        ..| +.|+|.+++.++
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--------~~p~~~G~i~~~g~~~  325 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA--------YPGKFEGNVFINGKPV  325 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC--------CCCCCCeEEEECCEEC
Confidence            378999999999986 99999999999999999998        664 689999988765

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.07  E-value=1.4e-09  Score=83.11  Aligned_cols=84  Identities=15%  Similarity=0.095  Sum_probs=62.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc--cccCCcc--cCceEEEEECCEEEEEEEcCCccccccc--------HHhhhh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL--VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYA   86 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~   86 (109)
                      +..+|+++|++|+|||||++++.+...  .+..|..  .+..+.+.+++..+.+||++|.......        ...+++
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~  281 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK  281 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence            335789999999999999999998643  3333432  2345678889999999999998654332        236788


Q ss_pred             cCCEEEEEEeCCCccc
Q 033893           87 KVIGSFKTKKIEFRDF  102 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~~  102 (109)
                      ++|+++.++|.+...+
T Consensus       282 ~aD~il~V~D~s~~~s  297 (442)
T TIGR00450       282 QADLVIYVLDASQPLT  297 (442)
T ss_pred             hCCEEEEEEECCCCCC
Confidence            9999999999865443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.07  E-value=1.2e-09  Score=71.06  Aligned_cols=76  Identities=25%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             EEeCCCCcHHHHHHHHhcCcc-cccCC--cccCceEEEEECCEEEEEEEcCCcccccc------cHHhhhh--cCCEEEE
Q 033893           25 FLGLDNAGKTTLLHMLKDERL-VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYYA--KVIGSFK   93 (109)
Q Consensus        25 lvG~~GsGKSTll~~l~g~~~-~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~------~~~~~~~--~~~~~v~   93 (109)
                      |+|.+|+|||||++++.+... ....|  |..+..+.+.+++..+.+||++|...+..      ++..++.  ++++++.
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            589999999999999998753 22223  44456678888888999999999876553      4677775  8999999


Q ss_pred             EEeCCCc
Q 033893           94 TKKIEFR  100 (109)
Q Consensus        94 ~~~~~~~  100 (109)
                      +.+.+..
T Consensus        81 v~d~~~~   87 (158)
T cd01879          81 VVDATNL   87 (158)
T ss_pred             EeeCCcc
Confidence            9887653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.07  E-value=6.3e-10  Score=71.80  Aligned_cols=73  Identities=22%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcc-----cccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQ-----IARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~-----~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|.+|+|||||++++.+.++. ..||.     .+.+.+   ..||++|+.     .++.+.+ +++++++++.+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~-----~~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d   71 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQ-----AVEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS   71 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccce-----eEEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence            6899999999999999999987542 22332     233333   578999873     2344433 4789999999999


Q ss_pred             CCCccccc
Q 033893           97 IEFRDFYE  104 (109)
Q Consensus        97 ~~~~~~~~  104 (109)
                      .+...++.
T Consensus        72 ~~~~~s~~   79 (142)
T TIGR02528        72 ATDPESRF   79 (142)
T ss_pred             CCCCCcCC
Confidence            87766543

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.07  E-value=2e-10  Score=80.41  Aligned_cols=53  Identities=28%  Similarity=0.406  Sum_probs=48.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      .+|+.+++++.++.. .++|.|||||||+++.++|.        ..++.|.|.+++.++.-+
T Consensus        20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--------l~~t~G~I~Idg~dVtk~   73 (263)
T COG1101          20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--------LKPTSGQILIDGVDVTKK   73 (263)
T ss_pred             HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--------cccCCceEEECceecccC
Confidence            478999999999995 99999999999999999998        889999999999998844

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.07  E-value=8.5e-11  Score=91.75  Aligned_cols=53  Identities=15%  Similarity=0.298  Sum_probs=47.8

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|.++..++
T Consensus       358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~~i~~~~  411 (582)
T PRK11176        358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF--------YDIDEGEILLDGHDLRDYT  411 (582)
T ss_pred             cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCceEEECCEEhhhcC
Confidence            7899999999887 599999999999999999999        8899999999999887443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.07  E-value=1.1e-10  Score=90.52  Aligned_cols=51  Identities=10%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~   67 (109)
                      .+|++++|++.+|++ +|+|+||||||||+++|+|.        ..+     +.|+|.++|.++.
T Consensus        23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~i~   79 (529)
T PRK15134         23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL--------LPSPPVVYPSGDIRFHGESLL   79 (529)
T ss_pred             eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCcCCccceEEEECCEecc
Confidence            378999999999986 99999999999999999998        443     6899999998765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.07  E-value=1.1e-10  Score=89.83  Aligned_cols=50  Identities=14%  Similarity=0.194  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus       263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~  313 (491)
T PRK10982        263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI--------REKSAGTITLHGKKIN  313 (491)
T ss_pred             ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC--------CcCCccEEEECCEECC
Confidence            68899999999986 99999999999999999998        7788899999987653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.06  E-value=1.1e-10  Score=89.76  Aligned_cols=50  Identities=22%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..+  +.|+|.++|.++.
T Consensus        16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~--------~~~~~~~G~i~~~g~~~~   68 (500)
T TIGR02633        16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV--------YPHGTWDGEIYWSGSPLK   68 (500)
T ss_pred             eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCeEEEECCEECC
Confidence            68899999999986 99999999999999999998        544  6899999887653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.1e-10  Score=82.52  Aligned_cols=55  Identities=20%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      ++++++|++.+|++ +|+|+||||||||+++|+|..-.  .| ..+..|+|.++|.++.
T Consensus        20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~i~~~g~~~~   75 (252)
T PRK14255         20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL--IP-GVTITGNVSLRGQNIY   75 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--CC-CCCcccEEEEcCEEcc
Confidence            67899999999986 99999999999999999996100  00 0014799999887653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.1e-10  Score=83.62  Aligned_cols=50  Identities=18%  Similarity=0.342  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++|.+++|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl--------~~~~~~~~~~G~i~i~g~~i~   95 (272)
T PRK14236         40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM--------NDLVDNCRIEGEIRLDGQNIY   95 (272)
T ss_pred             EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------CCCccCCCCceEEEECCEECc
Confidence            67899999999986 99999999999999999997        33     36799999987654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=8.9e-11  Score=93.02  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=42.6

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      +|++++|.+.+|+ ++|+|+||||||||+++|+|.        ..|+.|+|.+++.
T Consensus        16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~--------~~pd~G~I~~~~~   63 (638)
T PRK10636         16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE--------ISADGGSYTFPGN   63 (638)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEecCC
Confidence            6899999999987 599999999999999999998        7788999998763

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.2e-10  Score=84.86  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|++++|++.+|++ +|+|+||||||||+++|+|.        ..     ++.|+|.++|.++.
T Consensus        60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl--------~~~~~~~p~~G~I~i~g~~i~  115 (305)
T PRK14264         60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM--------NDRIKAARIDGSVELDGQDIY  115 (305)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccccCCCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999997        32     46899999987653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.3e-10  Score=82.75  Aligned_cols=50  Identities=12%  Similarity=0.168  Sum_probs=42.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~   67 (109)
                      +++++++++++|++ +|+|+||||||||++.|+|.        ..+     ..|+|.++|.++.
T Consensus        22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl--------~~~~~~~~~~G~i~~~g~~i~   77 (259)
T PRK14260         22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI--------SELEGPVKVEGVVDFFGQNIY   77 (259)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cCcccCCccceEEEECCEecc
Confidence            67899999999986 99999999999999999997        332     4799999987653

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=9.8e-11  Score=82.75  Aligned_cols=50  Identities=16%  Similarity=0.311  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      ++++++++++++++ +|+|+||||||||+++|.|.        .+     ++.|+|.++|.++.
T Consensus        18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~i~   73 (250)
T PRK14266         18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM--------NDLIPGFRHEGHIYLDGVDIY   73 (250)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------hccCCCCCCccEEEECCEEcc
Confidence            67899999999986 99999999999999999986        32     36799999997764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.1e-10  Score=92.15  Aligned_cols=50  Identities=12%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .++++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.+++..+
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl--------l~p~~G~i~~~g~~~   80 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL--------LEQAGGLVQCDKMLL   80 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCCeEEEECCEEe
Confidence            378899999999986 99999999999999999998        778889999988765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1.2e-10  Score=83.75  Aligned_cols=50  Identities=24%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..     +..|+|.++|.++.
T Consensus        35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~l~   90 (274)
T PRK14265         35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM--------NDLIPGAKVEGRLLYRDRNIY   90 (274)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cccccCCCcCceEEECCEecc
Confidence            67899999999986 99999999999999999987        32     24799999887653

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.05  E-value=2.2e-09  Score=69.44  Aligned_cols=79  Identities=18%  Similarity=0.211  Sum_probs=57.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc--ccCCcc--cCceEEEEECCEEEEEEEcCCccccccc--------HHhhhhcCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV--QHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYAKVI   89 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~~~~   89 (109)
                      +|+++|++||||||+++.+.+.+..  ...|..  .+..+.+..++..+.+||++|.......        -..++.+++
T Consensus         3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~   82 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEAD   82 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCC
Confidence            6899999999999999999987642  222322  2334667778889999999996543221        124567899


Q ss_pred             EEEEEEeCCCc
Q 033893           90 GSFKTKKIEFR  100 (109)
Q Consensus        90 ~~v~~~~~~~~  100 (109)
                      +++.+.+.+..
T Consensus        83 ~~v~v~d~~~~   93 (157)
T cd04164          83 LVLFVIDASRG   93 (157)
T ss_pred             EEEEEEECCCC
Confidence            99999988753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.05  E-value=8.5e-11  Score=80.34  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=50.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC---CEEEEEEEcCCccc---ccccHH
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG---KIKFKAFDLGGHQI---ARRVWK   82 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~---~~~i~~~d~~g~~~---~r~~~~   82 (109)
                      .+++++|+..++++ +|+|+||||||||+++|++.        ..|+.|++.+.   +....++.++..++   .|+-|.
T Consensus        21 gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r--------l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG   92 (258)
T COG4107          21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--------LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG   92 (258)
T ss_pred             CccccceeecCCcEEEEEecCCCcHHhHHHHHhcc--------cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence            36789999999998 99999999999999999988        88889999885   34455555555443   345553

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.05  E-value=1.7e-09  Score=83.11  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc--ccCCccc--CceEEEEECCEEEEEEEcCCccc--------ccccHHhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQH--PTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~--------~r~~~~~~~~~~   88 (109)
                      .+|+|+|.+|+|||||++++.+.+..  ...|...  ...+.+.+++..+.+||++|.+.        ++..+..++.++
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a  118 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA  118 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence            47899999999999999999987642  3334332  33456677888999999999762        344567789999


Q ss_pred             CEEEEEEeCCCc
Q 033893           89 IGSFKTKKIEFR  100 (109)
Q Consensus        89 ~~~v~~~~~~~~  100 (109)
                      |+++.++|.+..
T Consensus       119 D~il~VvD~~~~  130 (472)
T PRK03003        119 DAVLFVVDATVG  130 (472)
T ss_pred             CEEEEEEECCCC
Confidence            999999998654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1.4e-10  Score=82.10  Aligned_cols=53  Identities=19%  Similarity=0.300  Sum_probs=42.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc--CceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH--PTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~--~~~g~i~~~~~~i~   67 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|..-.     ..  ++.|+|.++|.++.
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-----~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14245         18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL-----IPATRLEGEIRIDGRNIY   73 (250)
T ss_pred             EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc-----cCCCCCceEEEECCEecc
Confidence            67899999999986 99999999999999999985100     11  24799999988765

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.04  E-value=1e-10  Score=91.62  Aligned_cols=53  Identities=19%  Similarity=0.295  Sum_probs=47.8

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..|..|+|.++|.++..+|
T Consensus       356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl--------~~p~~G~I~idg~~i~~~~  409 (592)
T PRK10790        356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--------YPLTEGEIRLDGRPLSSLS  409 (592)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCceEEECCEEhhhCC
Confidence            6899999999987 599999999999999999999        8888999999998877443

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.04  E-value=1.2e-10  Score=91.07  Aligned_cols=52  Identities=27%  Similarity=0.433  Sum_probs=47.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++++++|+. +|+|+||||||||++.|.|.        ..++.|+|.++|.++..+
T Consensus       355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--------~~p~~G~I~i~g~~i~~~  407 (574)
T PRK11160        355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA--------WDPQQGEILLNGQPIADY  407 (574)
T ss_pred             ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEhhhC
Confidence            78999999999975 99999999999999999998        888899999999887743

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.04  E-value=1.2e-10  Score=91.16  Aligned_cols=51  Identities=25%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++++++|+. +|+|+||||||||++.|.|.        . |..|+|.++|.++..+
T Consensus       365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~--------~-p~~G~I~i~g~~i~~~  416 (588)
T PRK11174        365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF--------L-PYQGSLKINGIELREL  416 (588)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------C-CCCcEEEECCEecccC
Confidence            68999999999874 99999999999999999998        7 7789999999888743

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.04  E-value=1.5e-10  Score=83.47  Aligned_cols=49  Identities=20%  Similarity=0.343  Sum_probs=43.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|.|.        .. ..|+|.++|.++.
T Consensus        19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl--------~~-~~G~I~i~g~~i~   68 (275)
T cd03289          19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--------LN-TEGDIQIDGVSWN   68 (275)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--------cC-CCcEEEECCEEhh
Confidence            68999999999985 99999999999999999998        55 5799999998664

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.04  E-value=9.7e-10  Score=81.80  Aligned_cols=82  Identities=20%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cc--cCCcccCceEEEEE-CCEEEEEEEcCCc---------ccccccHHhhhhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQ--HQPTQHPTSEELSI-GKIKFKAFDLGGH---------QIARRVWKDYYAK   87 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~--~~pt~~~~~g~i~~-~~~~i~~~d~~g~---------~~~r~~~~~~~~~   87 (109)
                      .+|+|+|.+|||||||++++.+.+. .+  ..+|..+....+.+ ++..+.+||++|.         +.++..+ .++.+
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~  268 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVRE  268 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHh
Confidence            5689999999999999999998764 22  23566677788888 5789999999996         2223322 35779


Q ss_pred             CCEEEEEEeCCCcccc
Q 033893           88 VIGSFKTKKIEFRDFY  103 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~  103 (109)
                      +|.++.+.|.+...+.
T Consensus       269 ADlil~VvD~s~~~~~  284 (351)
T TIGR03156       269 ADLLLHVVDASDPDRE  284 (351)
T ss_pred             CCEEEEEEECCCCchH
Confidence            9999999998765443

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.04  E-value=9.2e-11  Score=93.57  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      .+|+++++++++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|.++..++
T Consensus       493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--------~~p~~G~I~idg~~i~~~~  547 (710)
T TIGR03796       493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL--------YQPWSGEILFDGIPREEIP  547 (710)
T ss_pred             CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEeHHHCC
Confidence            37899999999987 599999999999999999999        8888999999998876443

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.04  E-value=1.3e-10  Score=82.89  Aligned_cols=51  Identities=16%  Similarity=0.297  Sum_probs=42.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~   67 (109)
                      .++++++|+++++++ +|+|+||||||||+++|+|.        ..     ++.|+|.+++..+.
T Consensus        30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~sG~i~~~g~~~~   86 (265)
T PRK14252         30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM--------HDLYPGNHYEGEIILHPDNVN   86 (265)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------cCCCCCCCcccEEEEcCcccc
Confidence            368899999999986 99999999999999999997        33     26789988876543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.03  E-value=1.8e-10  Score=89.04  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=44.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .|++++|.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++.++.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~i~  328 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL--------RPARGGRIMLNGKEIN  328 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCcEEEECCEECC
Confidence            47889999999986 99999999999999999998        7778899999887553

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=1.3e-10  Score=90.20  Aligned_cols=46  Identities=15%  Similarity=0.388  Sum_probs=41.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.+++
T Consensus        16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~~   62 (530)
T PRK15064         16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD--------LEPSAGNVSLDP   62 (530)
T ss_pred             eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEecC
Confidence            68899999999986 99999999999999999998        777889998875

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=1.9e-10  Score=82.03  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i   66 (109)
                      +|++++|.++++++ +|+|+||||||||+++|+|.        ..+     ..|+|.++|.++
T Consensus        22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~g~i~~~G~i~~~g~~i   76 (261)
T PRK14258         22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM--------NELESEVRVEGRVEFFNQNI   76 (261)
T ss_pred             EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------cCCCCCccccceEEECCEEh
Confidence            68899999999986 99999999999999999998        333     357888887655

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.03  E-value=1.6e-10  Score=89.43  Aligned_cols=51  Identities=22%  Similarity=0.385  Sum_probs=46.7

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..++.|+|.++|.++..
T Consensus       337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~I~~~g~~i~~  388 (529)
T TIGR02857       337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF--------VDPTEGSIAVNGVPLAD  388 (529)
T ss_pred             cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEehhh
Confidence            6899999999997 599999999999999999999        88889999999987763

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.03  E-value=1.4e-10  Score=91.83  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=42.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      .+|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++
T Consensus        17 ~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~--------~~p~~G~I~~~~   64 (635)
T PRK11147         17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE--------VLLDDGRIIYEQ   64 (635)
T ss_pred             eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCeEEEeCC
Confidence            368899999999875 99999999999999999998        778899999876

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.03  E-value=8e-12  Score=86.51  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=47.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      +++++++.+++|+| +++|||||||||.++++.|.        +.++.|+|.+++.++..
T Consensus        19 Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl--------v~~d~G~i~ld~~diT~   70 (243)
T COG1137          19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--------VRPDSGKILLDDEDITK   70 (243)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE--------EecCCceEEECCccccc
Confidence            57889999999997 99999999999999999999        99999999999988873

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.03  E-value=1.9e-10  Score=89.14  Aligned_cols=50  Identities=12%  Similarity=0.125  Sum_probs=44.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++++|++ +|+|+||||||||+++|.|.        .. +.|+|.++|.++.
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--------~~-~~G~i~~~g~~i~  350 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL--------IN-SQGEIWFDGQPLH  350 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc--------CC-CCcEEEECCEEcc
Confidence            378999999999986 99999999999999999998        53 6799999987664

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.03  E-value=1.8e-10  Score=81.52  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=45.7

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|+++++++++++ ++|+|+||||||||++.+.|.        ..+..|+|.+++..+.
T Consensus        18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL--------l~p~~G~v~~~g~~~~   69 (235)
T COG1122          18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--------LKPTSGEVLVDGLDTS   69 (235)
T ss_pred             eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc--------CcCCCCEEEECCeecc
Confidence            46889999999997 599999999999999999999        8888899998887765

>TIGR00436 era GTP-binding protein Era

Probab=99.02  E-value=2.8e-09  Score=76.41  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccc--cCC--cccCceEEEEECCEEEEEEEcCCccccc-c-------cHHhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQHPTSEELSIGKIKFKAFDLGGHQIAR-R-------VWKDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~--~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r-~-------~~~~~~~~~   88 (109)
                      |+|+++|.+|||||||+++|.+.++..  ..|  |.....|-...++..+.++|++|....+ .       ....++.++
T Consensus         1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            578999999999999999999987532  212  2223334344456778899999964321 1       134567899


Q ss_pred             CEEEEEEeCCCcc
Q 033893           89 IGSFKTKKIEFRD  101 (109)
Q Consensus        89 ~~~v~~~~~~~~~  101 (109)
                      |.++.+.|.+...
T Consensus        81 Dvvl~VvD~~~~~   93 (270)
T TIGR00436        81 DLILFVVDSDQWN   93 (270)
T ss_pred             CEEEEEEECCCCC
Confidence            9999999876543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.02  E-value=3.4e-09  Score=69.87  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=53.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-cc--CCcccCceEEEEECCEEEEEEEcCCcccc----cccH-----HhhhhcCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QH--QPTQHPTSEELSIGKIKFKAFDLGGHQIA----RRVW-----KDYYAKVI   89 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~--~pt~~~~~g~i~~~~~~i~~~d~~g~~~~----r~~~-----~~~~~~~~   89 (109)
                      +|+++|.+|+|||||++++.+.++. ..  .+|..+..+.+..++..+.+||++|....    +..+     ......++
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d   81 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA   81 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence            5799999999999999999987653 21  22444555666667789999999997421    1101     11112357


Q ss_pred             EEEEEEeCCCcc
Q 033893           90 GSFKTKKIEFRD  101 (109)
Q Consensus        90 ~~v~~~~~~~~~  101 (109)
                      +++.+++.+...
T Consensus        82 ~~l~v~d~~~~~   93 (168)
T cd01897          82 AVLFLFDPSETC   93 (168)
T ss_pred             cEEEEEeCCccc
Confidence            888888876543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=2e-10  Score=81.88  Aligned_cols=46  Identities=22%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++|.+.++++ +|+|+||||||||++.|+|.        ..++.|+|.++|
T Consensus        25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~--------~~~~~G~v~~~G   71 (257)
T PRK14246         25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL--------IEIYDSKIKVDG   71 (257)
T ss_pred             eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCcCceeEcC
Confidence            67899999999986 99999999999999999998        667777766665

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.02  E-value=1.3e-10  Score=92.90  Aligned_cols=52  Identities=17%  Similarity=0.399  Sum_probs=47.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++++++|+. +|+|+||||||||++.|.|.        ..+..|+|.++|.++..+
T Consensus       496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--------~~p~~G~I~idg~~i~~~  548 (711)
T TIGR00958       496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--------YQPTGGQVLLDGVPLVQY  548 (711)
T ss_pred             cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCEEEECCEEHHhc
Confidence            78999999999985 99999999999999999999        888899999999877643

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.02  E-value=1.7e-10  Score=79.51  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+++|||..++|||.|+-..+.+.| .+++||+-.+ .-.+.++ |  +.+.+||.+||+.+..+++-.|.++|.++.+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~c   83 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLC   83 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEE
Confidence            45789999999999999999998888 5789987422 3567774 6  6778999999999988888899999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      +++..+.+++..
T Consensus        84 fsv~~p~S~~nv   95 (198)
T KOG0393|consen   84 FSVVSPESFENV   95 (198)
T ss_pred             EEcCChhhHHHH
Confidence            999888887753

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.01  E-value=3.3e-11  Score=83.31  Aligned_cols=53  Identities=21%  Similarity=0.420  Sum_probs=47.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAF   69 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~   69 (109)
                      .+|++++|.+.+|++ +|+|||||||||++..|+|.        ..|..|++.+++ .++.-+
T Consensus        19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK--------trp~~G~v~f~g~~dl~~~   73 (249)
T COG4674          19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--------TRPQEGEVLFDGDTDLTKL   73 (249)
T ss_pred             eeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc--------CCCCcceEEEcCchhhccC
Confidence            578999999999999 99999999999999999998        788899999988 666644

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.01  E-value=1.9e-10  Score=89.83  Aligned_cols=45  Identities=29%  Similarity=0.318  Sum_probs=41.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++
T Consensus        22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~--------~~p~~G~i~~~   67 (556)
T PRK11819         22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--------DKEFEGEARPA   67 (556)
T ss_pred             eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEec
Confidence            78999999999986 99999999999999999998        77788998875

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.01  E-value=2.1e-10  Score=89.22  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|+++.
T Consensus       338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~~  388 (547)
T PRK10522        338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL--------YQPQSGEILLDGKPVT  388 (547)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEECC
Confidence            6889999999987 599999999999999999998        8889999999998765

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.01  E-value=1.3e-10  Score=92.74  Aligned_cols=53  Identities=25%  Similarity=0.361  Sum_probs=47.5

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      .+|+++++++++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|.++..+
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl--------~~p~~G~I~idg~~i~~~  541 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--------FQARSGEILLNGFSLKDI  541 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCcEEEECCEEHHHc
Confidence            47899999999887 699999999999999999999        888899999999877643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.01  E-value=6e-09  Score=65.45  Aligned_cols=77  Identities=23%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccc----------cccHHhhhhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIA----------RRVWKDYYAK   87 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~----------r~~~~~~~~~   87 (109)
                      +|+++|.+|||||||++.|.+.+.  ....|  |..+..+.+.+++..+.+.|++|-...          +...+ ....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLE-QISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHH-HHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHH-HHHH
Confidence            689999999999999999998643  22222  233444677788999889999885321          12323 3368


Q ss_pred             CCEEEEEEeCCC
Q 033893           88 VIGSFKTKKIEF   99 (109)
Q Consensus        88 ~~~~v~~~~~~~   99 (109)
                      ++.++.+.+...
T Consensus        80 ~d~ii~vv~~~~   91 (116)
T PF01926_consen   80 SDLIIYVVDASN   91 (116)
T ss_dssp             ESEEEEEEETTS
T ss_pred             CCEEEEEEECCC
Confidence            899998888544

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.01  E-value=3.7e-10  Score=80.67  Aligned_cols=43  Identities=23%  Similarity=0.382  Sum_probs=37.5

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS   60 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~   60 (109)
                      .+++++++ +++|++ +|+|+||||||||+++|+|.        ..++.|+|.
T Consensus        15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl--------~~p~~G~I~   58 (255)
T cd03236          15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK--------LKPNLGKFD   58 (255)
T ss_pred             hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCCceEe
Confidence            36888984 777875 99999999999999999999        778889986

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.00  E-value=1.9e-10  Score=91.64  Aligned_cols=52  Identities=21%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..++.|+|.++|.++..+
T Consensus       480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl--------~~p~~G~I~idg~~l~~~  532 (694)
T TIGR03375       480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--------YQPTEGSVLLDGVDIRQI  532 (694)
T ss_pred             ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEhhhC
Confidence            7899999999987 599999999999999999999        888899999999887744

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.00  E-value=4.6e-10  Score=78.36  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~   44 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAILGL--------IPPAKGTVKVAGASP   44 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCccc
Confidence            4667875 99999999999999999998        778889999998653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.00  E-value=1.9e-09  Score=79.68  Aligned_cols=80  Identities=19%  Similarity=0.185  Sum_probs=59.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECC-EEEEEEEcCCcccc-------cccHHhhhhcCC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGK-IKFKAFDLGGHQIA-------RRVWKDYYAKVI   89 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~-~~i~~~d~~g~~~~-------r~~~~~~~~~~~   89 (109)
                      ..|+|+|.++||||||+++|++.+.  .+ ..+|..|..|.+.+++ ..+.++|++|....       ...+-.++.+++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            3589999999999999999997642  22 2346678889998887 89999999986421       222334455799


Q ss_pred             EEEEEEeCCCc
Q 033893           90 GSFKTKKIEFR  100 (109)
Q Consensus        90 ~~v~~~~~~~~  100 (109)
                      +++.+.|.+..
T Consensus       238 ~ll~VvD~s~~  248 (329)
T TIGR02729       238 VLLHLIDISPL  248 (329)
T ss_pred             EEEEEEcCccc
Confidence            99999998654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.00  E-value=2.1e-10  Score=89.80  Aligned_cols=52  Identities=21%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++++++|+. +|+|+||||||||++.|.|.        ..|..|+|.++|.++..+
T Consensus       350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--------~~p~~G~I~i~g~~i~~~  402 (588)
T PRK13657        350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV--------FDPQSGRILIDGTDIRTV  402 (588)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCEEhhhC
Confidence            68999999999875 99999999999999999999        888899999999887743

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.00  E-value=2.7e-10  Score=88.34  Aligned_cols=46  Identities=28%  Similarity=0.430  Sum_probs=42.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++
T Consensus       334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--------~~p~~G~i~~~~  380 (530)
T PRK15064        334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--------LEPDSGTVKWSE  380 (530)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECC
Confidence            68899999999986 99999999999999999998        778889998876

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.99  E-value=2.8e-10  Score=88.43  Aligned_cols=48  Identities=23%  Similarity=0.375  Sum_probs=44.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~   65 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.+++..
T Consensus        39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL--------l~P~sGeI~I~G~~   87 (549)
T PRK13545         39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV--------TMPNKGTVDIKGSA   87 (549)
T ss_pred             EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC--------CCCCceEEEECCEe
Confidence            68899999999986 99999999999999999998        77889999998864

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.99  E-value=3.1e-10  Score=88.55  Aligned_cols=50  Identities=20%  Similarity=0.336  Sum_probs=46.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||++.|.|.        ..|+.|+|.++|.++.
T Consensus       357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~--------~~p~~G~i~~~g~~i~  407 (555)
T TIGR01194       357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--------YIPQEGEILLDGAAVS  407 (555)
T ss_pred             eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence            68999999999985 99999999999999999998        8889999999998776

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.99  E-value=2.2e-10  Score=89.33  Aligned_cols=52  Identities=23%  Similarity=0.425  Sum_probs=46.7

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++++++|+ ++|+|+||||||||++.|.|.        ..+..|+|.++|.++..+
T Consensus       355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl--------~~p~~G~I~i~g~~i~~~  407 (576)
T TIGR02204       355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF--------YDPQSGRILLDGVDLRQL  407 (576)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCEEEECCEEHHhc
Confidence            6899999999987 599999999999999999998        888899999999877633

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.99  E-value=3.1e-10  Score=88.74  Aligned_cols=50  Identities=18%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|+. +|+|+||||||||++.|.|.        ..|+.|+|.++|.++.
T Consensus       330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~--------~~p~~G~i~~~g~~~~  380 (569)
T PRK10789        330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--------FDVSEGDIRFHDIPLT  380 (569)
T ss_pred             cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCEEEECCEEHh
Confidence            68999999999985 99999999999999999998        7888999999998765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.99  E-value=2.2e-10  Score=88.57  Aligned_cols=45  Identities=33%  Similarity=0.450  Sum_probs=41.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++
T Consensus       299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~  344 (520)
T TIGR03269       299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV--------LEPTSGEVNVR  344 (520)
T ss_pred             EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEEe
Confidence            68899999999986 99999999999999999998        77788999984

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=3.1e-10  Score=83.75  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=43.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.....  + ..++.|+|.++|.++.
T Consensus        97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~--~-~~p~~G~I~idG~~i~  152 (329)
T PRK14257         97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI--E-GTSHEGEIYFLGTNTR  152 (329)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc--C-CCCCceEEEECCEEcc
Confidence            68999999999985 999999999999999999872100  0 0145799999998764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.99  E-value=2.7e-10  Score=88.80  Aligned_cols=46  Identities=28%  Similarity=0.312  Sum_probs=41.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++|++.+|++ +|+|+||||||||+++|+|.        ..++.|+|.+++
T Consensus        20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~--------~~p~~G~i~~~~   66 (552)
T TIGR03719        20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--------DKEFNGEARPAP   66 (552)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEecC
Confidence            78999999999985 99999999999999999998        777889988764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.99  E-value=8.5e-11  Score=88.42  Aligned_cols=65  Identities=18%  Similarity=0.330  Sum_probs=54.6

Q ss_pred             HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893           12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus        12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      -.|++++++|++ -++|.|||||||+++.+.|.        ..|+.|+|.+||..++   ....+++|.+....+..
T Consensus       340 gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL--------~~PqsG~I~ldg~pV~---~e~ledYR~LfSavFsD  405 (546)
T COG4615         340 GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL--------YQPQSGEILLDGKPVS---AEQLEDYRKLFSAVFSD  405 (546)
T ss_pred             cceeeEEecCcEEEEECCCCCcHHHHHHHHhcc--------cCCCCCceeECCccCC---CCCHHHHHHHHHHHhhh
Confidence            457888999996 89999999999999999999        8899999999998774   45677888876655543

>PLN03211 ABC transporter G-25; Provisional

Probab=98.99  E-value=3.7e-10  Score=89.86  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i   66 (109)
                      +|+++++++++|++ +|+|+||||||||+++|+|.        ..+  ..|+|.++|.++
T Consensus        83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~--------~~~~~~sG~I~inG~~~  134 (659)
T PLN03211         83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR--------IQGNNFTGTILANNRKP  134 (659)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--------CCCCceeEEEEECCEEC
Confidence            78999999999986 99999999999999999997        444  379999998764

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.99  E-value=3.2e-10  Score=88.15  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      .+++++++++++|+. +|+|+||||||||++.+.|.        ..|..|+|.++|.++..
T Consensus       332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~i~~  384 (544)
T TIGR01842       332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI--------WPPTSGSVRLDGADLKQ  384 (544)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEehhh
Confidence            368999999999975 99999999999999999998        78889999999987763

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.98  E-value=4.9e-10  Score=88.84  Aligned_cols=52  Identities=37%  Similarity=0.496  Sum_probs=44.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC-CEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG-KIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~-~~~i~~~   69 (109)
                      +|++++|.+.+|++ +|+|+||||||||+++|+|.        ..++.|+|.++ +..+.+.
T Consensus       327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--------~~p~~G~i~~~~~~~igy~  380 (638)
T PRK10636        327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE--------LAPVSGEIGLAKGIKLGYF  380 (638)
T ss_pred             eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEECCCEEEEEe
Confidence            67899999999975 99999999999999999998        77888999886 4455544

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.98  E-value=2.4e-10  Score=88.91  Aligned_cols=52  Identities=19%  Similarity=0.389  Sum_probs=46.8

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|+++++.+++|+ ++|+|+||||||||++.|.|.        ..++.|+|.++|.++..+
T Consensus       347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--------~~~~~G~I~i~g~~i~~~  399 (571)
T TIGR02203       347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF--------YEPDSGQILLDGHDLADY  399 (571)
T ss_pred             cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCeEEECCEeHHhc
Confidence            6889999998887 599999999999999999999        888999999999887633

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.98  E-value=3.3e-10  Score=88.43  Aligned_cols=46  Identities=28%  Similarity=0.538  Sum_probs=41.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++
T Consensus       339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--------~~p~~G~i~~~~  385 (556)
T PRK11819        339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ--------EQPDSGTIKIGE  385 (556)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECC
Confidence            68899999999986 99999999999999999998        778889998864

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.98  E-value=3.4e-10  Score=90.25  Aligned_cols=53  Identities=25%  Similarity=0.383  Sum_probs=47.8

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      +|+++++.+++|+ ++|+|+||||||||++.|.|.        ..|+.|+|.++|.++..++
T Consensus       472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~--------~~p~~G~I~idg~~i~~~~  525 (694)
T TIGR01846       472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL--------YTPQHGQVLVDGVDLAIAD  525 (694)
T ss_pred             ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEehhhCC
Confidence            6899999999887 599999999999999999999        8888999999999887443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.98  E-value=2.1e-10  Score=88.07  Aligned_cols=48  Identities=25%  Similarity=0.377  Sum_probs=41.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-ceEEEEECCEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-TSEELSIGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-~~g~i~~~~~~   65 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..+ +.|+|.++|..
T Consensus       275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~--------~~~~~~G~i~~~g~~  324 (490)
T PRK10938        275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD--------HPQGYSNDLTLFGRR  324 (490)
T ss_pred             EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCcccCCeEEEeccc
Confidence            68899999999986 99999999999999999997        443 47899888754

>cd01894 EngA1 EngA1 subfamily

Probab=98.98  E-value=5e-09  Score=67.85  Aligned_cols=76  Identities=22%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             EEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccccc--------cHHhhhhcCCEE
Q 033893           24 LFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKVIGS   91 (109)
Q Consensus        24 ~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~--------~~~~~~~~~~~~   91 (109)
                      +++|.+|+|||||++.|.+.+.  .+..|  |.......+..++..+.++|.+|....+.        .+..++++++++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            5899999999999999998752  22222  22234456677788999999999877443        344567889999


Q ss_pred             EEEEeCCC
Q 033893           92 FKTKKIEF   99 (109)
Q Consensus        92 v~~~~~~~   99 (109)
                      +.+.+...
T Consensus        81 i~v~d~~~   88 (157)
T cd01894          81 LFVVDGRE   88 (157)
T ss_pred             EEEEeccc
Confidence            99887643

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.97  E-value=7e-10  Score=78.80  Aligned_cols=51  Identities=25%  Similarity=0.351  Sum_probs=40.2

Q ss_pred             HHHhcCCccc-----ccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893           10 ILASLGLWQK-----EAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus        10 ~l~~v~~~~~-----~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      .+.++++.+.     ++++ +|+|+||||||||+++|+|.        ..++.|+|.+++..+.+
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~--------~~p~~G~i~~~g~~i~~   65 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--------LKPDEGDIEIELDTVSY   65 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCCCeEEECCceEEE
Confidence            4455555554     5765 99999999999999999998        77888999998865543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.97  E-value=3.5e-10  Score=88.19  Aligned_cols=46  Identities=28%  Similarity=0.531  Sum_probs=41.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|+++++.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++
T Consensus       337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--------~~p~~G~i~~~~  383 (552)
T TIGR03719       337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--------EQPDSGTIKIGE  383 (552)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCeEEEECC
Confidence            68899999999986 99999999999999999998        778889998864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.4e-10  Score=87.37  Aligned_cols=54  Identities=22%  Similarity=0.456  Sum_probs=48.9

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      .+|+++++++++|+ |+|+|++||||||+++.+.|.        ..++.|+|..+|.++..++
T Consensus       352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~--------~~~~~G~i~~~g~~~~~l~  406 (573)
T COG4987         352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA--------WDPQQGSITLNGVEIASLD  406 (573)
T ss_pred             chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc--------cCCCCCeeeECCcChhhCC
Confidence            47899999998875 899999999999999999998        8899999999998887554

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.97  E-value=4.2e-09  Score=80.64  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCccccccc--------HHhhhhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYAK   87 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~~   87 (109)
                      ..+|+++|.+|+|||||++.+.+.+.  .+..|  |..+....+.+++..+.+||++|.+.....        ...++.+
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~  294 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE  294 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence            35789999999999999999998753  33333  333445678889999999999997653321        2347889


Q ss_pred             CCEEEEEEeCCCccc
Q 033893           88 VIGSFKTKKIEFRDF  102 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~  102 (109)
                      +|.++.++|.+...+
T Consensus       295 aD~il~VvD~s~~~s  309 (449)
T PRK05291        295 ADLVLLVLDASEPLT  309 (449)
T ss_pred             CCEEEEEecCCCCCC
Confidence            999999999865543

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=4.6e-10  Score=87.11  Aligned_cols=51  Identities=31%  Similarity=0.487  Sum_probs=46.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .++.++++++++++. +|+|+||||||||++.|.|.        ..+..|+|.+||+++.
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~--------~~~~~G~I~vng~~l~  386 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF--------LAPTQGEIRVNGIDLR  386 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc--------CCCCCceEEECCcccc
Confidence            367899999999985 99999999999999999998        7888999999998877

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.95  E-value=4e-10  Score=87.92  Aligned_cols=54  Identities=24%  Similarity=0.425  Sum_probs=47.9

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      .+|++++|.+++++ ++|+|++||||||+++.|.+.        ..+..|+|.+||+++...+
T Consensus       343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~--------~~~~~G~I~idg~dI~~i~  397 (567)
T COG1132         343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL--------YDPTSGEILIDGIDIRDIS  397 (567)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCeEEECCEehhhcC
Confidence            36889999999987 599999999999999999998        7888999999999888443

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.95  E-value=4.1e-09  Score=71.67  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHhcCcc----------cccC---CcccCceEEEEECC-EEEEEEEcCCcccccccHH
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLKDERL----------VQHQ---PTQHPTSEELSIGK-IKFKAFDLGGHQIARRVWK   82 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~----------~~~~---pt~~~~~g~i~~~~-~~i~~~d~~g~~~~r~~~~   82 (109)
                      ...+.+|++.|+.++||||++++++....          ....   .|+..+.|.+.+++ ..+.+++++||+|++.+|.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            34567899999999999999999996642          0111   34567889988887 8999999999999999999


Q ss_pred             hhhhcCCEEEEEEeCCCcc
Q 033893           83 DYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~~~~  101 (109)
                      .+.+++.++++..+-+...
T Consensus        87 ~l~~ga~gaivlVDss~~~  105 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPI  105 (187)
T ss_pred             HHhCCcceEEEEEecCCCc
Confidence            9999999999988765544

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.95  E-value=4.7e-10  Score=88.03  Aligned_cols=50  Identities=26%  Similarity=0.375  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++++++|+. +|+|+||||||||++.|.|.        ..++.|+|.++|.++.
T Consensus       350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~~  400 (585)
T TIGR01192       350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV--------YDPTVGQILIDGIDIN  400 (585)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC--------CCCCCCEEEECCEEhh
Confidence            68899999999885 99999999999999999998        7888999999998765

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.94  E-value=4.9e-10  Score=86.72  Aligned_cols=45  Identities=29%  Similarity=0.504  Sum_probs=40.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEEC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIG   62 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~   62 (109)
                      ++++++|.+.+|++ +|+|+||||||||+++|+|.        .  .++.|+|.++
T Consensus        15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~~~p~~G~i~~~   62 (520)
T TIGR03269        15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM--------DQYEPTSGRIIYH   62 (520)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--------ccCCCCceEEEEe
Confidence            68899999999986 99999999999999999997        5  4678998886

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd04163 Era Era subfamily

Probab=98.93  E-value=1.8e-08  Score=65.26  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCC---ccc-CceEEEEECCEEEEEEEcCCcccccc--------cHHhhhhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQH-PTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAK   87 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~p---t~~-~~~g~i~~~~~~i~~~d~~g~~~~r~--------~~~~~~~~   87 (109)
                      ..+|+++|++||||||+++.+.+.+.....+   +.. ...+....++..+.++|.+|......        ....++.+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999876432221   111 12223333457888999998654322        33456788


Q ss_pred             CCEEEEEEeCCCc
Q 033893           88 VIGSFKTKKIEFR  100 (109)
Q Consensus        88 ~~~~v~~~~~~~~  100 (109)
                      ++.++.+.+.+..
T Consensus        83 ~d~i~~v~d~~~~   95 (168)
T cd04163          83 VDLVLFVVDASEP   95 (168)
T ss_pred             CCEEEEEEECCCc
Confidence            9999998887654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.93  E-value=9.4e-09  Score=77.90  Aligned_cols=78  Identities=21%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cccCCcc--cCceEEEEECCEEEEEEEcCCccc--------ccccHHhhhhcCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKVI   89 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~--------~r~~~~~~~~~~~   89 (109)
                      +|+|+|.+|+|||||++.|.+.+.  ....|..  ....+.+.+++..+.+||++|...        .+.....++.++|
T Consensus         3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad   82 (435)
T PRK00093          3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEAD   82 (435)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence            689999999999999999998763  2333322  344577888899999999999876        3344566788999


Q ss_pred             EEEEEEeCCC
Q 033893           90 GSFKTKKIEF   99 (109)
Q Consensus        90 ~~v~~~~~~~   99 (109)
                      +++.+.+.+.
T Consensus        83 ~il~vvd~~~   92 (435)
T PRK00093         83 VILFVVDGRA   92 (435)
T ss_pred             EEEEEEECCC
Confidence            9999998754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.93  E-value=3.6e-10  Score=86.84  Aligned_cols=54  Identities=22%  Similarity=0.356  Sum_probs=50.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL   71 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~   71 (109)
                      ++++++|..++|+. +|+||||||||||.|.+.|.        ..|..|.|.+|+-++..||.
T Consensus       351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~--------w~p~~G~VRLDga~l~qWd~  405 (580)
T COG4618         351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI--------WPPTSGSVRLDGADLRQWDR  405 (580)
T ss_pred             ceecceeEecCCceEEEECCCCccHHHHHHHHHcc--------cccCCCcEEecchhhhcCCH
Confidence            57899999999996 99999999999999999998        88889999999999999984

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.93  E-value=1.4e-08  Score=67.94  Aligned_cols=78  Identities=23%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-c--cCCcccCceEEEEECCEEEEEEEcCCcc------cccccHHhhhh--cCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQHPTSEELSIGKIKFKAFDLGGHQ------IARRVWKDYYA--KVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~--~~pt~~~~~g~i~~~~~~i~~~d~~g~~------~~r~~~~~~~~--~~~~   90 (109)
                      +|+++|.+++|||||+++|+|.+.. .  ...|.....|.+.+++..+.+.|++|.-      ....++..|..  .+|.
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~   81 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL   81 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence            6899999999999999999998742 2  2335556778999999999999998832      23446667764  7889


Q ss_pred             EEEEEeCCC
Q 033893           91 SFKTKKIEF   99 (109)
Q Consensus        91 ~v~~~~~~~   99 (109)
                      ++.+.|-+.
T Consensus        82 ii~VvDa~~   90 (156)
T PF02421_consen   82 IIVVVDATN   90 (156)
T ss_dssp             EEEEEEGGG
T ss_pred             EEEECCCCC
Confidence            998888654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.93  E-value=5.9e-10  Score=88.27  Aligned_cols=53  Identities=21%  Similarity=0.412  Sum_probs=44.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFD   70 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~d   70 (109)
                      ++++++|.+.+|++ +|+|+||||||||+++|.|.        ..|+.|+|.++. ..+.+.+
T Consensus       334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--------~~p~~G~i~~~~~~~i~y~~  388 (635)
T PRK11147        334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ--------LQADSGRIHCGTKLEVAYFD  388 (635)
T ss_pred             EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEECCCcEEEEEe
Confidence            67899999999975 99999999999999999998        778889998853 3444443

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=4.4e-10  Score=86.86  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=46.2

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD   70 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d   70 (109)
                      ++|+.++|+++.|+ |+|+|.|||||||++|.|.+.        .. ..|+|.++|++++-.+
T Consensus       366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF--------~d-~sG~I~IdG~dik~~~  419 (591)
T KOG0057|consen  366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF--------FD-YSGSILIDGQDIKEVS  419 (591)
T ss_pred             ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH--------hc-cCCcEEECCeeHhhhC
Confidence            37899999998886 899999999999999999986        55 6899999999887444

>PLN03140 ABC transporter G family member; Provisional

Probab=98.90  E-value=1.4e-09  Score=92.62  Aligned_cols=51  Identities=31%  Similarity=0.448  Sum_probs=44.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~   67 (109)
                      .+|+++++.+++|++ +|+|+|||||||||++|+|.        ..++   .|+|.++|.++.
T Consensus       179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~--------l~~~~~~~G~I~~nG~~~~  233 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK--------LDPSLKVSGEITYNGYRLN  233 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC--------CCCCCcceeEEEECCEech
Confidence            378999999999997 99999999999999999998        5454   799999987654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.90  E-value=8e-10  Score=96.29  Aligned_cols=50  Identities=24%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++++++.+++|++ +|+|+|||||||++++|+|.        ..++.|+|.++|.++.
T Consensus      1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl--------l~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257      1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD--------TTVTSGDATVAGKSIL 2004 (2272)
T ss_pred             EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC--------CCCCccEEEECCEECc
Confidence            78899999999997 99999999999999999999        8888999999998763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.90  E-value=1.6e-08  Score=68.34  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCc-ccccCCcccCceEEEEEC-CEEEEEEEcCCc----------ccccccHHhhhh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQHPTSEELSIG-KIKFKAFDLGGH----------QIARRVWKDYYA   86 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~-~~~~~pt~~~~~g~i~~~-~~~i~~~d~~g~----------~~~r~~~~~~~~   86 (109)
                      ..-+|+++|.+|||||||++.+.+.+ .....|+.+.......+. +..+.+||++|.          ++++.+...|+.
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  102 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLR  102 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHH
Confidence            33568999999999999999999875 344444433221111111 367889999994          334445566666


Q ss_pred             cC---CEEEEEEeCC
Q 033893           87 KV---IGSFKTKKIE   98 (109)
Q Consensus        87 ~~---~~~v~~~~~~   98 (109)
                      .+   +.++.+.+.+
T Consensus       103 ~~~~~~~~~~v~d~~  117 (196)
T PRK00454        103 TRENLKGVVLLIDSR  117 (196)
T ss_pred             hCccceEEEEEEecC
Confidence            55   3455555543

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.90  E-value=5.4e-09  Score=75.77  Aligned_cols=77  Identities=16%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGS   91 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~   91 (109)
                      +++|..+...| +|.|+|||||||++|+|+|.        ..|+.|.|.++|..+.  |....-.   + +-+  +-..-
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL--------~rPdeG~I~lngr~L~--Ds~k~i~---l-p~~--~RriG   79 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGL--------TRPDEGRIELNGRVLV--DAEKGIF---L-PPE--KRRIG   79 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhcc--------CCccccEEEECCEEee--cccCCcc---c-Chh--hheee
Confidence            45666666444 99999999999999999999        8999999999998766  5321100   0 111  11234


Q ss_pred             EEEEeCCCcccccc
Q 033893           92 FKTKKIEFRDFYEV  105 (109)
Q Consensus        92 v~~~~~~~~~~~~~  105 (109)
                      .+++|-.+|+++++
T Consensus        80 YVFQDARLFpH~tV   93 (352)
T COG4148          80 YVFQDARLFPHYTV   93 (352)
T ss_pred             eEeeccccccceEE
Confidence            45556666776665

>PLN03232 ABC transporter C family member; Provisional

Probab=98.89  E-value=1.1e-09  Score=93.49  Aligned_cols=52  Identities=17%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      .+|+++++++++|+ ++|+|++|||||||++.|.+.        ..++.|+|.+||+++.-
T Consensus      1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl--------~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232       1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI--------VELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCCceEEECCEEhhh
Confidence            47999999999987 699999999999999999998        88889999999998873

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.89  E-value=1.2e-09  Score=86.72  Aligned_cols=50  Identities=22%  Similarity=0.355  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|.|.        ..++.|++.++|.++.
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~i~   73 (648)
T PRK10535         23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL--------DKPTSGTYRVAGQDVA   73 (648)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcC
Confidence            68899999999986 99999999999999999999        7788999999998665

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.88  E-value=1.8e-09  Score=85.38  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=43.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC---ceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP---TSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~---~~g~i~~~~~~i~   67 (109)
                      +|+++++.+++|++ +|+|+||||||||+++|+|.        ..+   ..|+|.++|.++.
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~--------~~~~~~~~G~i~~~g~~~~   93 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR--------SPKGVKGSGSVLLNGMPID   93 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCcceeEEEECCEECC
Confidence            78999999999996 99999999999999999997        333   3689999997653

>PLN03073 ABC transporter F family; Provisional

Probab=98.88  E-value=9.9e-10  Score=88.19  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=41.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++|.++++++ +|+|+||||||||+++|.|.        ..|+.|+|.+++
T Consensus       524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl--------l~p~~G~I~~~~  570 (718)
T PLN03073        524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE--------LQPSSGTVFRSA  570 (718)
T ss_pred             eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCceEEECC
Confidence            68899999999975 99999999999999999998        778889998765

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.88  E-value=1.7e-08  Score=67.92  Aligned_cols=81  Identities=23%  Similarity=0.387  Sum_probs=51.9

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCc-ccccCCcccCce--EEEEECCEEEEEEEcCCccc----------ccccHHhh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQHPTS--EELSIGKIKFKAFDLGGHQI----------ARRVWKDY   84 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~-~~~~~pt~~~~~--g~i~~~~~~i~~~d~~g~~~----------~r~~~~~~   84 (109)
                      .+..+|+|+|++|+|||||++.+.+.. .....++.+.+.  .....+ ..+.+||++|...          +..+...|
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            345678999999999999999999875 334444443222  122223 3678999999432          22233456


Q ss_pred             hhc---CCEEEEEEeCCC
Q 033893           85 YAK---VIGSFKTKKIEF   99 (109)
Q Consensus        85 ~~~---~~~~v~~~~~~~   99 (109)
                      ++.   +++++.+.+.+.
T Consensus        95 l~~~~~~~~ii~vvd~~~  112 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRH  112 (179)
T ss_pred             HHhChhhcEEEEEecCCC
Confidence            654   467888877654

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.88  E-value=2.2e-09  Score=83.63  Aligned_cols=54  Identities=33%  Similarity=0.573  Sum_probs=45.8

Q ss_pred             HHHhcCCccccc-EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEEEc
Q 033893           10 ILASLGLWQKEA-KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFDL   71 (109)
Q Consensus        10 ~l~~v~~~~~~~-~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~d~   71 (109)
                      ++++++|.++++ +|+|+|+||+|||||++.|.|.        .++..|+|.++. ..+.++|-
T Consensus       337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~--------~~~~~G~v~~g~~v~igyf~Q  392 (530)
T COG0488         337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE--------LGPLSGTVKVGETVKIGYFDQ  392 (530)
T ss_pred             eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh--------cccCCceEEeCCceEEEEEEe
Confidence            567889998766 5899999999999999999998        777789998864 77777764

>PLN03130 ABC transporter C family member; Provisional

Probab=98.88  E-value=1.4e-09  Score=93.42  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=47.3

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++++|++++|+ |+|+|++|||||||++.|.+.        ..+..|+|.+||+++.
T Consensus      1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl--------~~p~~G~I~IDG~dI~ 1304 (1622)
T PLN03130       1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI--------VELERGRILIDGCDIS 1304 (1622)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc--------CCCCCceEEECCEecc
Confidence            47899999999986 699999999999999999998        8888999999999887

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.88  E-value=1.4e-09  Score=77.08  Aligned_cols=51  Identities=31%  Similarity=0.470  Sum_probs=41.3

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|.++++.+++++ .+|+|+||||||||++.+++.        ..+..|.+.+-|..+.
T Consensus        45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--------~~pssg~~~~~G~~~G   96 (257)
T COG1119          45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--------HPPSSGDVTLLGRRFG   96 (257)
T ss_pred             eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--------cCCCCCceeeeeeecc
Confidence            36889999999987 599999999999999999998        5566666666555443

>PTZ00243 ABC transporter; Provisional

Probab=98.87  E-value=1.2e-09  Score=93.55  Aligned_cols=53  Identities=17%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      .+|++++|++++|+ |+|+|++|||||||++.|.+.        ..++.|+|.++|+++.-+
T Consensus      1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl--------~~p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243       1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM--------VEVCGGEIRVNGREIGAY 1377 (1560)
T ss_pred             ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEcccC
Confidence            37899999998886 699999999999999999999        888899999999988744

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.87  E-value=1.3e-08  Score=67.59  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=49.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHH----hhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK----DYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~----~~~~~~~~~v~~~~~   97 (109)
                      +|+++|.+|+|||||+++|.+...      .....+.+.+++.  ..||++|....+..|.    ..++++|+++.+++.
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~------~~~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT------LARKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc------cCccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            689999999999999999997631      1123355555543  2589999733222221    236799999999988


Q ss_pred             CCcc
Q 033893           98 EFRD  101 (109)
Q Consensus        98 ~~~~  101 (109)
                      +...
T Consensus        75 ~~~~   78 (158)
T PRK15467         75 NDPE   78 (158)
T ss_pred             CCcc
Confidence            6543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		5e-32
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		1e-28
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		1e-27
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		9e-27
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		1e-25
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		5e-25
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-10
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-10
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-10
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-10
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		7e-10
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		7e-10
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-09
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-09
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-09
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		6e-09
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-09
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		1e-08
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-08
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-08
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-08
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-08
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-08
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		3e-08
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		3e-08
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-08
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		4e-08
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-08
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		5e-08
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		5e-08
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		6e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-08
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		7e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		7e-08
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		7e-08
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		7e-08
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-07
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		3e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-06
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-06
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-06
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-06
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		3e-06
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		4e-06
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		4e-06
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-04

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 71/88 (80%)
Query: 3  LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62
          +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG
Sbjct: 6  IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65
Query: 63 KIKFKAFDLGGHQIARRVWKDYYAKVIG 90
           IKF  FDLGGH  ARR+WKDY+ +V G
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNG 93

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 69/93 (74%), Gaps = 4/93 (4%)
Query: 2  FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE 57
          F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSE
Sbjct: 3  FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE 62
Query: 58 ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
          EL+I  + F  FDLGGH  ARRVWK+Y   + G
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAING 95

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)
Query: 5   DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64
           + F  +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  +
Sbjct: 20  NGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 79
Query: 65  KFKAFDLGGHQIARRVWKDYYAKVIG 90
            F  FDLGGH+ ARRVWK+Y   + G
Sbjct: 80  TFTTFDLGGHEQARRVWKNYLPAING 105

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score =  115 bits (287), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 64/84 (76%)
Query: 7  FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66
          F  +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct: 9  FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 68
Query: 67 KAFDLGGHQIARRVWKDYYAKVIG 90
            FDLGGH  ARRVWK+Y   + G
Sbjct: 69 TTFDLGGHIQARRVWKNYLPAING 92

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 63/84 (75%)
Query: 7  FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66
          F  +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct: 3  FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 62
Query: 67 KAFDLGGHQIARRVWKDYYAKVIG 90
            FDLGG   ARRVWK+Y   + G
Sbjct: 63 TTFDLGGGIQARRVWKNYLPAING 86

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 58/70 (82%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80
           K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+
Sbjct: 2  GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 81 WKDYYAKVIG 90
          WKDY+ +V G
Sbjct: 62 WKDYFPEVNG 71

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 15  GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGH 74
           GL  KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG 
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 75  QIARRVWKDYYAKVIG 90
              R +W+ YY    G
Sbjct: 377 DKIRPLWRHYYTGTQG 392

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 74
Query: 79 RVWKDYYAK 87
            W  YY  
Sbjct: 75 SSWNTYYTN 83

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 74
Query: 79 RVWKDYYAK 87
            W  YY  
Sbjct: 75 SSWNTYYTN 83

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 79 RVWKDYYAK 87
            W  YY  
Sbjct: 80 SSWNTYYTN 88

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 16 LW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGG 73
          LW   KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS   +K   +DLGG
Sbjct: 12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 74 HQIARRVWKDYYA 86
              R  W+ YYA
Sbjct: 72 QTSIRPYWRCYYA 84

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +  R
Sbjct: 21 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 80
Query: 79 RVWKDYYAKV 88
            W  YY   
Sbjct: 81 SSWNTYYTNT 90

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           +E K++ +GLDNAGKTT+L+      +V   PT     EE+ +    F  +D+GG +  
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESL 73
Query: 78 RRVWKDYYAKV 88
          R  W  YY+  
Sbjct: 74 RSSWNTYYSNT 84

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 71 RPLWRHYYTGTQG 83

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 70 RPLWRHYYTGTQG 82

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 1  REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 79 RVWKDYYAKV 88
            W+ YY+  
Sbjct: 61 PYWRCYYSNT 70

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 75 RSLWRHYYCNTEG 87

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 3  REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 79 RVWKDYYAKV 88
            W+ YY+  
Sbjct: 63 PYWRCYYSNT 72

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 71 RPLWRHYYTGTQG 83

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 6  REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 79 RVWKDYYAKV 88
            W+ YY+  
Sbjct: 66 PYWRCYYSNT 75

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 75 RSLWRHYYRNTEG 87

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY    G
Sbjct: 75 RSLWRHYYRNTEG 87

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
           E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 3  SEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62
Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
            W+ Y+        VI S   K+ E
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFE 88

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 79  RVWKDYYAK------VIGSFKTKKIE 98
             W+ Y+        VI S   K+ E
Sbjct: 76  PYWRSYFENTDILIYVIDSADRKRFE 101

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 79  RVWKDYYAK------VIGSFKTKKIE 98
             W+ Y+        VI S   K+ E
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFE 100

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          +K+ +IL +GLD AGKTT+L+ +K   +V   PT     E +    I F  +D+GG    
Sbjct: 15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKI 74
Query: 78 RRVWKDYYAKVIG 90
          R +W+ YY+   G
Sbjct: 75 RPLWRHYYSNTDG 87

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 78  RRVWKDYYAKVIG 90
           R +W+ Y+    G
Sbjct: 223 RPLWRHYFQNTQG 235

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 12 ASLGLW------QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65
           S+G W      +KE +IL +GLD AGKT++L+ LK   +V   PT     E +    I 
Sbjct: 3  GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 66 FKAFDLGGHQIARRVWKDYY 85
          F  +D+GG    R +W+ YY
Sbjct: 63 FTVWDVGGQDKIRPLWRHYY 82

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79
          E +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R 
Sbjct: 3  EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 80 VWKDYYAKVIG 90
          +W+ YY    G
Sbjct: 63 LWRHYYTGTQG 73

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79
          E +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R 
Sbjct: 2  EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 80 VWKDYYAKVIG 90
          +W+ YY    G
Sbjct: 62 LWRHYYTGTQG 72

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 8   YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67
           +G L S    +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F 
Sbjct: 8   FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 67
Query: 68  AFDLGGHQIARRVWKDYYAKVIG-------SFKTKKIEFRD 101
            +D+GG    R +W+ Y+    G       + + + +E RD
Sbjct: 68  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 108

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W
Sbjct: 2  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
          + YY    G
Sbjct: 62 RHYYTGTQG 70

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
           E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R
Sbjct: 3  SEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
            W+ Y+        VI S   K+ E
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFE 88

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W
Sbjct: 2  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
          + YY    G
Sbjct: 62 RHYYTGTQG 70

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 78 RRVWKDYYAKVIG 90
          R +W+ Y+    G
Sbjct: 75 RPLWRHYFQNTQG 87

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 78 RRVWKDYYAKVIG 90
          R +W+ Y+    G
Sbjct: 74 RPLWRHYFQNTQG 86

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
          R +WK Y+    G
Sbjct: 75 RPLWKHYFQNTQG 87

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W
Sbjct: 2  RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
          + YY    G
Sbjct: 62 RHYYTGTQG 70

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    R +W
Sbjct: 2  RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 82 KDYYAKVIG 90
          + YY    G
Sbjct: 62 RHYYRNTEG 70

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 86
Query: 78 RRVWKDYYAKVIG 90
          R +W+ Y+    G
Sbjct: 87 RPLWRHYFQNTQG 99

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
          + Y+    G
Sbjct: 62 RHYFQNTQG 70

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          ++E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 78 RRVWKDYYAKVIG 90
          R  W++Y+    G
Sbjct: 74 RSYWRNYFESTDG 86

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
          ++E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78 RRVWKDYYAKVIG 90
          R  W++Y+    G
Sbjct: 76 RSYWRNYFESTDG 88

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69
          IL  +   ++E ++L LGLDNAGKTT+L     E +    PT     + L     K   +
Sbjct: 8  ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIW 67
Query: 70 DLGGHQIARRVWKDYYAKVIG 90
          D+GG +  R  W++Y+    G
Sbjct: 68 DVGGQKSLRSYWRNYFESTDG 88

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 4  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 82 KDYYAKVIG 90
          + Y+    G
Sbjct: 64 RHYFQNTQG 72

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQHPTSEELSIGKIKFKAFDLGGHQI 76
          KE  +L LGLDN+GKTT+++ LK          PT   + E+     + F  FD+ G   
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 77 ARRVWKDYY 85
           R +W+ YY
Sbjct: 80 YRNLWEHYY 88

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS------EELSIGKIKFK 67
          +G  + + +++  GLDN+GKTT+++ +K  +      ++H T+      E    G++ F 
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQ----SSSKHITATVGYNVETFEKGRVAFT 66
Query: 68 AFDLGGHQIARRVWKDYYAKV 88
           FD+GG +  R +W+ YY  +
Sbjct: 67 VFDMGGAKKFRGLWETYYDNI 87

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 6  WFYGILASLGLWQKEAKI--LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63
          W   +  +LGL   + KI  L LGLDNAGKT++L+ L    +V   PT     E L    
Sbjct: 6  WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65
Query: 64 IKFKAFDLGGHQIARRVWKDYYA 86
          I F+ +DLGG    R  W+ Y++
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFS 88

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  R  W
Sbjct: 3  RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 82 KDYYAKVIG 90
          ++Y+    G
Sbjct: 63 RNYFESTDG 71

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 4   FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIG 62
            DWF  +      W++E ++  +GL  +GKTT ++++   +  +   PT      +++ G
Sbjct: 20  LDWFKALF-----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG 74
Query: 63  KIKFKAFDLGGHQIARRVWKDYYAKV 88
            +  K +D+GG    R +W+ Y   V
Sbjct: 75  NVTIKLWDIGGQPRFRSMWERYCRGV 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	9e-44
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-42
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-28
2ged_A	193	SR-beta, signal recognition particle receptor beta	5e-27
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-26
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-26
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-24
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-24
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-22
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-22
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	8e-22
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-20
2fh5_B	214	SR-beta, signal recognition particle receptor beta	6e-20
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	9e-20
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-17
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-04

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  140 bits (354), Expect = 9e-44
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 3  LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62
          +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG
Sbjct: 6  IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65

Query: 63 KIKFKAFDLGGHQIARRVWKDYYAKV 88
           IKF  FDLGGH  ARR+WKDY+ +V
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEV 91

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  135 bits (342), Expect = 7e-42
 Identities = 53/87 (60%), Positives = 66/87 (75%)

Query: 2  FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61
          +++  F  +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I
Sbjct: 7  WIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI 66

Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKV 88
            + F  FDLGGH  ARRVWK+Y   +
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAI 93

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  100 bits (250), Expect = 4e-28
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 6  WFYGILASLGLW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63
          W   +  +LGL    ++ ++L LGLDNAGKT++L+ L    +V   PT     E L    
Sbjct: 6  WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65

Query: 64 IKFKAFDLGGHQIARRVWKDYYAKV 88
          I F+ +DLGG    R  W+ Y++  
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDT 90

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 97.1 bits (242), Expect = 5e-27
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 4   FDWFYGILASL--GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61
            +W    L     G    +  I+  G  N+GKT+LL +L  + +     +Q P S     
Sbjct: 30  REWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD 89

Query: 62  GKIKFKAFDLGGHQIARRVWKDYY 85
           G       D  GH   R    DY 
Sbjct: 90  GS-GVTLVDFPGHVKLRYKLSDYL 112

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 96.0 bits (239), Expect = 3e-26
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 12 ASLGLWQKEAK--ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69
          + +G+ QK  +  I+  G  N+GKT+LL +L  + +     +Q P S     G       
Sbjct: 2  SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGS-GVTLV 60

Query: 70 DLGGHQIARRVWKDYY 85
          D  GH   R    DY 
Sbjct: 61 DFPGHVKLRYKLSDYL 76

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 95.0 bits (237), Expect = 3e-26
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          M     F  +   L    KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS
Sbjct: 1  MGN--IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 58

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
             +K   +DLGG    R  W+ YYA  
Sbjct: 59 YKNLKLNVWDLGGQTSIRPYWRCYYADT 86

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 90.3 bits (225), Expect = 1e-24
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQ 75
             +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG  
Sbjct: 3  HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62

Query: 76 IARRVWKDYYAKV 88
            R  W+ YY+  
Sbjct: 63 SIRPYWRCYYSNT 75

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 89.2 bits (222), Expect = 4e-24
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGG 73
          +    +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG
Sbjct: 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74

Query: 74 HQIARRVWKDYY 85
           +  R  W  YY
Sbjct: 75 QESLRSSWNTYY 86

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 84.6 bits (210), Expect = 3e-22
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 3  LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62
          L      +        +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +   
Sbjct: 2  LLSILRKLK---SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ 58

Query: 63 KIKFKAFDLGGHQIARRVWKDYYAKV 88
            K   +D+GG +  R  W+ Y+   
Sbjct: 59 GFKLNVWDIGGQRKIRPYWRSYFENT 84

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 84.2 bits (209), Expect = 6e-22
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query: 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQ 75
             +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I   +F  +D+GG +
Sbjct: 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 71

Query: 76 IARRVWKDYY 85
            R  W  YY
Sbjct: 72 SLRSSWNTYY 81

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 83.9 bits (208), Expect = 8e-22
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 14 LGLWQKEAKILFLGLDNAGKTTLLHMLK--DERLVQHQPTQHPTSEELSIGKIKFKAFDL 71
          +    KE  +L LGLDN+GKTT+++ LK  + +     PT   + E+     + F  FD+
Sbjct: 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 74

Query: 72 GGHQIARRVWKDYYAKV 88
           G    R +W+ YY + 
Sbjct: 75 SGQGRYRNLWEHYYKEG 91

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 80.4 bits (199), Expect = 2e-20
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 1  MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
          M L          +   ++E ++L LGLDNAGKTT+L     E +    PT     + L 
Sbjct: 3  MGLLTILK----KMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE 58

Query: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKV 88
              K   +D+GG +  R  W++Y+   
Sbjct: 59 HRGFKLNIWDVGGQKSLRSYWRNYFEST 86

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 79.4 bits (196), Expect = 6e-20
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK---IKFKAFDLGGHQ 75
           +  +LF+GL ++GKT L   L   +    Q +   +S    +           DL GH+
Sbjct: 6  SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 76 IAR-RVWKDYYAKVIG 90
            R ++   + +    
Sbjct: 66 SLRFQLLDRFKSSARA 81

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 78.5 bits (194), Expect = 9e-20
 Identities = 29/79 (36%), Positives = 42/79 (53%)

Query: 9  GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68
          G L S    +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  
Sbjct: 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTV 77

Query: 69 FDLGGHQIARRVWKDYYAK 87
          +D+GG    R +W+ Y+  
Sbjct: 78 WDVGGQDKIRPLWRHYFQN 96

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 73.0 bits (180), Expect = 8e-18
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
          +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 82 KDYY 85
          + Y+
Sbjct: 62 RHYF 65

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 72.6 bits (179), Expect = 1e-17
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 13 SLGLW----QKEAKILFLGLDNAGKTTLLHMLK-DERLVQHQPTQHPTSEELSIGKIKFK 67
          S GL     ++E ++  +GL  +GKTT ++++   +      PT      +++ G +  K
Sbjct: 11 SSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 70

Query: 68 AFDLGGHQIARRVWKDYYAKV 88
           +D+GG    R +W+ Y   V
Sbjct: 71 LWDIGGQPRFRSMWERYCRGV 91

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 65.5 bits (160), Expect = 1e-14
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 18/100 (18%)

Query: 9   GILASLGLWQKE--AKILFLGLDNAGKTTLLHMLKDERL-----------VQHQPT---- 51
           G ++++    +E   KI++ G   +GKTT L  +  +              + + T    
Sbjct: 1   GSMSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFD 60

Query: 52  -QHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
                  E+   K +F  + + G        K     V G
Sbjct: 61  FLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDG 100

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 17  WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQI 76
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG   
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 221

Query: 77  ARRVWKDYY 85
            R +W+ Y+
Sbjct: 222 IRPLWRHYF 230

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 16 LWQKEAKILFLGLDNAGKTT----LLHMLKDERLVQHQPTQHPTSEELSI-GKIKFKAFD 70
              + +IL +GL  +GK++    + H +     +  + T     +++S    + F+ +D
Sbjct: 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75

Query: 71 LGGHQIARRVWKDYYA 86
            G         DY  
Sbjct: 76 FPGQMDFFDPTFDYEM 91

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 20  EAKILFLGLDNAGKTT----LLHMLKDERLVQHQPTQHPTSEEL-SIGKIKFKAFDLGGH 74
            +K+L +G   +GK++    +          +   T       L  +G +    +D GG 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 75  QIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIF 108
            +    +       I       I   D    E+ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL 96

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 23 ILFLGLDNAGKTT----LLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +L +G+   GK++    + H ++    +  + T +P+ E  S   I     +L G     
Sbjct: 2  VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYF 60

Query: 79 RVWKD 83
              D
Sbjct: 61 EPSYD 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.83
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.75
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.72
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.71
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.71
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.71
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.7
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.7
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.69
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.69
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.68
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.66
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.65
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.64
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.62
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.61
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.61
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.58
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.58
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.57
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.57
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.56
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.56
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.56
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.56
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.55
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.55
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.55
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.55
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.55
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.55
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.55
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.54
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.54
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.54
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.54
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.54
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.54
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.54
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.54
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.54
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.54
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.54
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.54
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.54
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.54
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.54
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.53
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.53
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.53
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.53
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.53
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.53
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.53
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.53
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.53
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.53
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.53
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.52
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.52
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.52
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.52
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.52
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.52
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.52
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.52
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.51
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.51
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.51
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.51
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.51
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.51
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.5
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.5
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.5
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.5
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.49
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.49
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.49
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.49
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.49
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.49
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.48
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.48
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.48
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.48
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.48
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.47
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.47
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.46
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.46
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.45
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.44
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.41
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.4
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.39
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.39
1g6h_A	257	High-affinity branched-chain amino acid transport	99.39
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.38
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.08
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.38
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.37
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.36
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.36
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.35
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.35
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.35
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.35
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.33
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.33
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.33
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.32
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.32
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.32
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.32
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.32
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.31
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.3
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.3
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.3
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.3
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.3
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.3
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.29
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.29
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.29
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.29
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.28
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.28
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.27
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.26
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.25
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.24
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.24
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.24
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.24
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.24
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.24
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.23
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.22
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.22
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.22
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.2
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.19
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.19
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.18
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.18
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.17
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.16
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.15
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.15
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.14
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.14
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.14
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.13
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.13
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.12
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.12
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.11
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.11
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.11
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.09
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.09
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.09
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.08
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.07
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.07
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.06
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.04
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.03
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.02
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.02
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.01
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.0
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.99
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.98
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.97
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.94
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.93
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.93
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.9
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.86
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.86
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.85
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.83
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.83
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.83
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.82
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.82
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.81
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.81
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.8
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.8
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.79
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.79
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.79
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.77
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.76
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.76
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.75
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.74
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.73
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.73
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.73
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.71
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.71
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.71
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.7
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.7
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.69
2og2_A	359	Putative signal recognition particle receptor; nuc	98.69
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.69
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.69
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.68
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.68
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.68
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.67
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.67
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.66
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.66
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.66
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.65
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.65
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.63
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.63
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.62
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.62
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.61
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.6
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.59
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.59
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.58
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.58
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.57
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.56
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.56
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.55
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.55
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.54
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.53
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.52
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.51
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.51
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.5
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.49
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.49
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.49
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.48
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.48
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.46
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.46
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.45
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.45
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.43
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.41
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.4
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.4
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.4
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.39
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.38
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.38
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.38
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.38
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.38
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.36
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.36
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.35
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.34
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.34
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.34
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.34
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.33
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.32
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.31
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.3
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.3
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.3
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.29
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.29
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.29
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.28
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.28
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.26
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.26
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.23
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.21
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.17
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.15
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.15
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.14
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.12
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.11
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.11
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.1
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.09
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.09
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.07
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.07
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.04
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.03
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.03
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.02
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.0
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.0
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.99
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.98
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.97
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.96
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.94
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.92
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.92
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.89
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.89
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.88
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.86
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.84
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.84
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.84
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.83
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.83
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.83
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.83
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.82
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.82
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.81
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.77
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.77
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.77
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.74
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.74
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.72
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.71
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.69
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.69
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.68
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.68
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.66
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.66
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.66
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.64
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.62
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.61
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.6
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.59
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.57
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.57
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.56
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.56
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.55
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.54
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.53
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.53
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.52
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.52
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.52
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.5
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.49
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.49
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.49
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.48
1via_A	175	Shikimate kinase; structural genomics, transferase	97.48
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.45
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.44
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.42
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.42
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.41
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.41
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.41
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.41
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.41
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.4
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.4
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.38
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.37
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.37
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.36
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.36
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.35
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.34
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.34
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.34
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.32
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.32
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.3
3bos_A	242	Putative DNA replication factor; P-loop containing	97.29
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.29
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.29
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.29
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.29
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.29
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.29
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.26
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.26
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.25
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.24
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.23
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.21
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.2
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.18
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.16
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.16
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.16
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.15
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.14
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.11
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.1
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.1
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.09
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.08
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.06
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.05
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.04
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.04
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.03
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.99
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.99
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.99
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.98
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.97
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.96
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.95
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.95
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.94
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.91
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.9
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	96.89
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.88
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.88
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.87
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.86
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.85
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.85
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.83
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.83
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.82
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.8
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.78
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.76
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.76
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.75
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.72
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.71
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.69
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.69
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.68
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.66
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.65
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.64
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.64
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.62
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.62
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.61
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.61
3ice_A	422	Transcription termination factor RHO; transcriptio	96.59
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.59

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.84  E-value=6.3e-21  Score=128.86  Aligned_cols=99  Identities=55%  Similarity=0.841  Sum_probs=81.1

Q ss_pred             HHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893            7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA   86 (109)
Q Consensus         7 ~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~   86 (109)
                      +..+++++++..++.+|+++|++|||||||++++.+.++..+.||.++..+.+.+++..+.+||++|+++++.+|+.|++
T Consensus        12 ~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (198)
T 1f6b_A           12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP   91 (198)
T ss_dssp             -CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG
T ss_pred             HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHh
Confidence            55788999999999999999999999999999999888877889988888999999999999999999999999999999


Q ss_pred             cCCEEEEEEeCCCcccccc
Q 033893           87 KVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~~  105 (109)
                      ++++++.++|.+...+++.
T Consensus        92 ~~d~~i~v~D~~~~~s~~~  110 (198)
T 1f6b_A           92 AINGIVFLVDCADHERLLE  110 (198)
T ss_dssp             GCSEEEEEEETTCGGGHHH
T ss_pred             cCCEEEEEEECCCHHHHHH
Confidence            9999999999987765543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.83  E-value=1.9e-20  Score=125.67  Aligned_cols=103  Identities=60%  Similarity=1.023  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHH
Q 033893            3 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK   82 (109)
Q Consensus         3 ~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~   82 (109)
                      |+..+..+++++++..++.+|+++|++|+|||||++++.+.++..+.||.++..+++.+++..+.+||++|+++++.+|+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   85 (190)
T 1m2o_B            6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK   85 (190)
T ss_dssp             ------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG
T ss_pred             HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence            45567788899999999999999999999999999999988888888999988899999999999999999999999999


Q ss_pred             hhhhcCCEEEEEEeCCCcccccc
Q 033893           83 DYYAKVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~  105 (109)
                      .|++++++++.++|.+...+++.
T Consensus        86 ~~~~~~d~~i~v~d~~~~~s~~~  108 (190)
T 1m2o_B           86 DYFPEVNGIVFLVDAADPERFDE  108 (190)
T ss_dssp             GGCTTCCEEEEEEETTCGGGHHH
T ss_pred             HHHhcCCEEEEEEECCChHHHHH
Confidence            99999999999999988766554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.75  E-value=7.4e-18  Score=112.05  Aligned_cols=90  Identities=31%  Similarity=0.516  Sum_probs=76.8

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +..+..+|+++|.+|+|||||++.+.+.++..+.||.++....+.+++..+.+||++|+++++.+|..|++++++++.++
T Consensus        12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~   91 (187)
T 1zj6_A           12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV   91 (187)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            45667889999999999999999999887777788888888899999999999999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      |.+...+++.
T Consensus        92 d~~~~~s~~~  101 (187)
T 1zj6_A           92 DSTDRERISV  101 (187)
T ss_dssp             ETTCTTTHHH
T ss_pred             eCCCHHHHHH
Confidence            9987665544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.72  E-value=1.9e-17  Score=109.67  Aligned_cols=95  Identities=29%  Similarity=0.466  Sum_probs=78.3

Q ss_pred             HHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893           10 ILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV   88 (109)
Q Consensus        10 ~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~   88 (109)
                      +++.+ +. .+..+|+++|++|+|||||++.+.+.+...+.||.++....+.+++..+.+||++|+++++..+..|++++
T Consensus         8 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   86 (186)
T 1ksh_A            8 ILKKM-KQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST   86 (186)
T ss_dssp             ----------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTC
T ss_pred             HHHhh-cccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCC
Confidence            34444 33 56678999999999999999999987766788888888888999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCcccccc
Q 033893           89 IGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        89 ~~~v~~~~~~~~~~~~~  105 (109)
                      ++++.+++.+...+++.
T Consensus        87 d~ii~v~d~~~~~s~~~  103 (186)
T 1ksh_A           87 DGLIWVVDSADRQRMQD  103 (186)
T ss_dssp             SEEEEEEETTCGGGHHH
T ss_pred             CEEEEEEECcCHHHHHH
Confidence            99999999987766544

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.71  E-value=3e-17  Score=109.07  Aligned_cols=88  Identities=33%  Similarity=0.513  Sum_probs=78.4

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .+..+|+++|++|+|||||++++.+.++....||.++....+.+++..+.+||++|+++++..|..|++++++++.++|.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS   93 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence            45678999999999999999999988777778888877788899999999999999999999999999999999999999


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        94 ~~~~s~~~  101 (181)
T 1fzq_A           94 ADRKRFEE  101 (181)
T ss_dssp             TCGGGHHH
T ss_pred             cCHHHHHH
Confidence            87665543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.71  E-value=2.2e-17  Score=108.82  Aligned_cols=97  Identities=35%  Similarity=0.505  Sum_probs=79.7

Q ss_pred             HHHHHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhh
Q 033893            7 FYGILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY   85 (109)
Q Consensus         7 ~~~~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~   85 (109)
                      +.++++.+ |. .++.+|+++|++|||||||++.+.+.++....||.++....+.+++..+.+||++|+++++..|..|+
T Consensus         5 ~~~~~~~~-~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   83 (183)
T 1moz_A            5 FSSMFDKL-WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY   83 (183)
T ss_dssp             HHHHHGGG-TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred             HHHHHHHh-cCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence            33455555 45 56778999999999999999999988777788888888889999999999999999999999999999


Q ss_pred             hcCCEEEEEEeCCCccccc
Q 033893           86 AKVIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~  104 (109)
                      +++++++.++|.+...+++
T Consensus        84 ~~~d~ii~v~d~~~~~s~~  102 (183)
T 1moz_A           84 ADTAAVIFVVDSTDKDRMS  102 (183)
T ss_dssp             TTEEEEEEEEETTCTTTHH
T ss_pred             ccCCEEEEEEECCCHHHHH
Confidence            9999999999987665544

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.71  E-value=1.2e-17  Score=111.01  Aligned_cols=87  Identities=32%  Similarity=0.494  Sum_probs=78.4

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .++.+|+++|++|+|||||++.+.+.++.+..||.++...++.+++..+.+||++|+++++..++.|++++++++.++|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   99 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS   99 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence            56778999999999999999999988777788888888888999999999999999999999999999999999999999


Q ss_pred             CCccccc
Q 033893           98 EFRDFYE  104 (109)
Q Consensus        98 ~~~~~~~  104 (109)
                      +...+++
T Consensus       100 ~~~~s~~  106 (189)
T 2x77_A          100 TDRDRMG  106 (189)
T ss_dssp             TCCTTHH
T ss_pred             CCHHHHH
Confidence            7765544

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.70  E-value=5.1e-17  Score=109.00  Aligned_cols=94  Identities=30%  Similarity=0.485  Sum_probs=76.6

Q ss_pred             HHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCE
Q 033893           11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIG   90 (109)
Q Consensus        11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~   90 (109)
                      ++.+ +..+..+|+++|++|+|||||++.+.+.++.+..||.++....+..++..+.+||++|+++++.+|+.|++++++
T Consensus        21 ~~~~-~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (192)
T 2b6h_A           21 FSRI-FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQG   99 (192)
T ss_dssp             GGGT-TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred             HHHh-ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            3444 455667899999999999999999998888777888888788888899999999999999999999999999999


Q ss_pred             EEEEEeCCCcccccc
Q 033893           91 SFKTKKIEFRDFYEV  105 (109)
Q Consensus        91 ~v~~~~~~~~~~~~~  105 (109)
                      ++.++|.+...+++.
T Consensus       100 iilv~D~~~~~s~~~  114 (192)
T 2b6h_A          100 LIFVVDSNDRERVQE  114 (192)
T ss_dssp             EEEEEETTCGGGHHH
T ss_pred             EEEEEECCCHHHHHH
Confidence            999999987765543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.70  E-value=5.2e-17  Score=105.17  Aligned_cols=84  Identities=32%  Similarity=0.514  Sum_probs=75.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +|+++|++|+|||||++.+.+..+.+..||.++....+..++..+.+||++|+++++.+|+.|++++++++.+++.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   81 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE   81 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999877877889988888888888899999999999999999999999999999999998776


Q ss_pred             cccc
Q 033893          102 FYEV  105 (109)
Q Consensus       102 ~~~~  105 (109)
                      +++.
T Consensus        82 s~~~   85 (164)
T 1r8s_A           82 RVNE   85 (164)
T ss_dssp             GHHH
T ss_pred             HHHH
Confidence            5543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.69  E-value=5.2e-17  Score=112.05  Aligned_cols=92  Identities=18%  Similarity=0.299  Sum_probs=69.9

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      .++.+|+|+|.+|+|||||++.+....| .++.||++.+.  -.+..++  +.+.+||++|+++++.+++.||+++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            4567899999999999999999998877 56789887543  3455555  67889999999999999999999999999


Q ss_pred             EEEeCCCccccccccCC
Q 033893           93 KTKKIEFRDFYEVEIFW  109 (109)
Q Consensus        93 ~~~~~~~~~~~~~~~~w  109 (109)
                      ++++++...+++....|
T Consensus        91 lv~di~~~~Sf~~i~~~  107 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKW  107 (216)
T ss_dssp             EEEETTCHHHHHTHHHH
T ss_pred             EEeecchhHHHHHHHHH
Confidence            99999999888776554

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.69  E-value=1.1e-16  Score=104.18  Aligned_cols=87  Identities=34%  Similarity=0.507  Sum_probs=77.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +..+|+++|++|+|||||++.+.+..+.+..||.++....+.+++..+.+||++|+++++..|..|++++++++.+++.+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   85 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   85 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence            45679999999999999999999888878888888888889999999999999999999999999999999999999987


Q ss_pred             Ccccccc
Q 033893           99 FRDFYEV  105 (109)
Q Consensus        99 ~~~~~~~  105 (109)
                      ...+++.
T Consensus        86 ~~~s~~~   92 (171)
T 1upt_A           86 DRDRIGI   92 (171)
T ss_dssp             CCTTHHH
T ss_pred             CHHHHHH
Confidence            7655543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.68  E-value=1.3e-16  Score=105.62  Aligned_cols=88  Identities=32%  Similarity=0.530  Sum_probs=77.8

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .+..+|+++|.+|+|||||++.+.+.++....||.++....+.+++..+.+||++|+++++.++..|++++++++.++|.
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~   98 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS   98 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEET
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            34567999999999999999999998887788888888889999999999999999999999999999999999999999


Q ss_pred             CCcccccc
Q 033893           98 EFRDFYEV  105 (109)
Q Consensus        98 ~~~~~~~~  105 (109)
                      +...+++.
T Consensus        99 ~~~~s~~~  106 (181)
T 2h17_A           99 TDRERISV  106 (181)
T ss_dssp             TCTTTHHH
T ss_pred             CCHHHHHH
Confidence            87655543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.66  E-value=3.1e-16  Score=104.51  Aligned_cols=88  Identities=25%  Similarity=0.419  Sum_probs=76.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      ...+|+++|.+|+|||||++.+.+.++.  .+.||.++....+...+..+.+||++|+++++.++..|++++++++.++|
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   95 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD   95 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3457899999999999999999998874  45889888888888888999999999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      .+...+++..
T Consensus        96 ~~~~~s~~~~  105 (199)
T 4bas_A           96 SSDHLRLCVV  105 (199)
T ss_dssp             TTCGGGHHHH
T ss_pred             CCcHHHHHHH
Confidence            9887765543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.65  E-value=6.6e-16  Score=102.87  Aligned_cols=88  Identities=22%  Similarity=0.411  Sum_probs=77.0

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+..+|+++|..|+|||||++.+.+.++. ...||.+.+...+..++..+.+||++|+++++..|..|++++++++.++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   99 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD   99 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence            34567899999999999999999988774 67888888777888889999999999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      .+...+++.
T Consensus       100 ~~~~~s~~~  108 (188)
T 1zd9_A          100 AADQEKIEA  108 (188)
T ss_dssp             TTCGGGHHH
T ss_pred             CCCHHHHHH
Confidence            987665543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.64  E-value=4.2e-16  Score=103.73  Aligned_cols=88  Identities=31%  Similarity=0.440  Sum_probs=76.2

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCc-c-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDER-L-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~-~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+..+|+++|.+|+|||||++.+.+.. + ....||.++....+.+++..+.+||++|+++++.+|..|++++++++.++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   98 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI   98 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence            455689999999999999999999876 3 56778888888889999999999999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      |.+...+++.
T Consensus        99 d~~~~~s~~~  108 (190)
T 2h57_A           99 DSSDRLRMVV  108 (190)
T ss_dssp             ETTCHHHHHH
T ss_pred             ECCCHHHHHH
Confidence            9887655543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.62  E-value=6.3e-16  Score=101.24  Aligned_cols=88  Identities=22%  Similarity=0.320  Sum_probs=73.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECC---EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGK---IKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~---~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      +..+|+++|++|+|||||++.+.+..+. +..||.+  +....+.+++   ..+.+||++|+++++.++..|++++++++
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   84 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL   84 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence            4567899999999999999999987763 4567766  3456777776   78999999999999999999999999999


Q ss_pred             EEEeCCCccccccc
Q 033893           93 KTKKIEFRDFYEVE  106 (109)
Q Consensus        93 ~~~~~~~~~~~~~~  106 (109)
                      .++|.+...+++..
T Consensus        85 ~v~d~~~~~s~~~~   98 (178)
T 2hxs_A           85 LVYDITNYQSFENL   98 (178)
T ss_dssp             EEEETTCHHHHHTH
T ss_pred             EEEECCCHHHHHHH
Confidence            99999877665543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.61  E-value=1.8e-15  Score=101.64  Aligned_cols=85  Identities=21%  Similarity=0.366  Sum_probs=68.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+++++|++|||||||++++.+..+ ....|+.+  +..+++.+++.  .+.+||.+|+++++.++..|++++++++.+
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   84 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   84 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence            35789999999999999999999876 34556654  45688999885  566899999999999999999999999999


Q ss_pred             EeCCCccccc
Q 033893           95 KKIEFRDFYE  104 (109)
Q Consensus        95 ~~~~~~~~~~  104 (109)
                      ++++...+++
T Consensus        85 ~d~~~~~s~~   94 (199)
T 2f9l_A           85 YDIAKHLTYE   94 (199)
T ss_dssp             EETTCHHHHH
T ss_pred             EECcCHHHHH
Confidence            9987655443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.61  E-value=2e-15  Score=101.21  Aligned_cols=84  Identities=19%  Similarity=0.349  Sum_probs=69.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCEEE--EEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKIKF--KAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~~i--~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+++|+|++|||||||++++.+..+ ....||.+  +..+++.+++..+  .+||.+|+++++.++..+++++++++.++
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~  109 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY  109 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence            4679999999999999999999876 45666665  4578999998654  46999999999999999999999999999


Q ss_pred             eCCCccccc
Q 033893           96 KIEFRDFYE  104 (109)
Q Consensus        96 ~~~~~~~~~  104 (109)
                      +.+...+++
T Consensus       110 d~~~~~s~~  118 (191)
T 1oix_A          110 DIAKHLTYE  118 (191)
T ss_dssp             ETTCHHHHH
T ss_pred             ECcCHHHHH
Confidence            987655443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.58  E-value=8.9e-15  Score=94.61  Aligned_cols=87  Identities=16%  Similarity=0.340  Sum_probs=71.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ++.+|+++|++|||||||++.+.+..+ ....|+.+.  ....+.+++  ..+.+||.+|+++++..+..|++++++++.
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            356799999999999999999998876 456676653  345666665  578899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        82 v~d~~~~~s~~~   93 (170)
T 1ek0_A           82 VYDVTKPQSFIK   93 (170)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEecCChHHHHH
Confidence            999887665543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.58  E-value=4.8e-15  Score=99.95  Aligned_cols=86  Identities=22%  Similarity=0.339  Sum_probs=66.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|+|||||++.+.+..+ ....||.+.  ....+.+++  ..+.+||++|+++++.+|..|++++++++.++
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~  109 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAY  109 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEE
Confidence            4689999999999999999998876 456677653  346677777  68889999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      |.+...+++..
T Consensus       110 D~~~~~s~~~~  120 (201)
T 2hup_A          110 DITKRSSFLSV  120 (201)
T ss_dssp             ETTBHHHHHTH
T ss_pred             ECCCHHHHHHH
Confidence            99877665543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.57  E-value=7.8e-15  Score=97.82  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      .+..+|+++|.+|+|||||++.+.+..+ ....||.+... ..+.+++  ..+.+||++|+++++.++..|+++++++++
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  100 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL  100 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence            3456789999999999999999998876 45667766443 3455666  456899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus       101 v~d~~~~~s~~~  112 (194)
T 3reg_A          101 CFAVNNRTSFDN  112 (194)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEECCCHHHHHH
Confidence            999988776654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=96.26  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=72.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++++.+..+ ....|+.+  +....+.+++  +.+.+||++|+++++.++..|++++++++.+
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   95 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV   95 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence            35789999999999999999998776 45566665  3446677777  6788999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      ++.+...+++..
T Consensus        96 ~d~~~~~s~~~~  107 (196)
T 3tkl_A           96 YDVTDQESFNNV  107 (196)
T ss_dssp             EETTCHHHHHTH
T ss_pred             EECcCHHHHHHH
Confidence            999877665543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.56  E-value=8.7e-15  Score=95.68  Aligned_cols=87  Identities=20%  Similarity=0.279  Sum_probs=71.3

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|+|||||++.+.+..+ ....|+.+  +....+.+++  ..+.+||++|+++++..+..|++++++++.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   87 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV   87 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence            345789999999999999999998876 45566665  3446677787  678899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        88 v~d~~~~~s~~~   99 (181)
T 3tw8_B           88 VYDVTSAESFVN   99 (181)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEECCCHHHHHH
Confidence            999987766554

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=1.2e-14  Score=98.39  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=71.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|.+|+|||||++.+.+..+ ....||.+.  ....+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  105 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT  105 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            35789999999999999999998776 456677653  345677777  5788999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      +|.+...+++..
T Consensus       106 ~D~~~~~s~~~~  117 (201)
T 2ew1_A          106 YDITCEESFRCL  117 (201)
T ss_dssp             EETTCHHHHHTH
T ss_pred             EECCCHHHHHHH
Confidence            999877665543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.56  E-value=1.2e-14  Score=95.89  Aligned_cols=86  Identities=26%  Similarity=0.429  Sum_probs=71.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....|+.+  +....+.+++  ..+.+||++|+++++..+..|++++++++.+
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   89 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   89 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence            45789999999999999999998776 45566665  3345667777  6888999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        90 ~d~~~~~s~~~  100 (186)
T 2bme_A           90 YDITSRETYNA  100 (186)
T ss_dssp             EETTCHHHHHT
T ss_pred             EECcCHHHHHH
Confidence            99987766544

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.56  E-value=2.1e-14  Score=93.66  Aligned_cols=87  Identities=18%  Similarity=0.290  Sum_probs=71.3

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ++.+|+++|+.|+|||||++.+.+..+ ....|+.+  +....+.+++  ..+.+||++|+++++..+..|++++++++.
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            456789999999999999999998766 45566665  3345666776  578899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        93 v~d~~~~~s~~~  104 (179)
T 2y8e_A           93 VYDITNTNSFHQ  104 (179)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECCCHHHHHH
Confidence            999877655544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.55  E-value=1.6e-14  Score=94.33  Aligned_cols=87  Identities=16%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|||||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|+++++..+..|++++++++.
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   85 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   85 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence            345789999999999999999998776 4566766643  45666777  588899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        86 v~d~~~~~s~~~   97 (177)
T 1wms_A           86 TFSVDDSQSFQN   97 (177)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECcCHHHHHH
Confidence            999987765543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.55  E-value=1e-14  Score=99.39  Aligned_cols=87  Identities=17%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++  +.+.+||++|+++++.+++.|++++++++++
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  105 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC  105 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEE
Confidence            345789999999999999999998876 45677776443 2334443  6888999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      +|++...+++.
T Consensus       106 ~d~~~~~s~~~  116 (214)
T 3q3j_B          106 FDISRPETVDS  116 (214)
T ss_dssp             EETTCTHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99988777665

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=2e-14  Score=94.18  Aligned_cols=90  Identities=20%  Similarity=0.321  Sum_probs=65.1

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCC
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      +..+..+|+++|++|+|||||++.+.+.++.  ...|+.+.+.  ..+.+++  ..+.+||++|+++++..+..|+++++
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3445568999999999999999999988763  5667766543  3445666  47889999999999999999999999


Q ss_pred             EEEEEEeCCCcccccc
Q 033893           90 GSFKTKKIEFRDFYEV  105 (109)
Q Consensus        90 ~~v~~~~~~~~~~~~~  105 (109)
                      +++.+++.+...+++.
T Consensus        86 ~ii~v~d~~~~~s~~~  101 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDN  101 (180)
T ss_dssp             EEEEEEETTCHHHHHT
T ss_pred             EEEEEEECCCHHHHHH
Confidence            9999999987665544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.55  E-value=1.5e-14  Score=95.05  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=71.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....||.+.. ...+.+++  ..+.+||++|+++++.++..|++++++++++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   84 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   84 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence            456789999999999999999997665 4566766533 45566777  5678999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        85 ~d~~~~~s~~~   95 (181)
T 3t5g_A           85 YSVTSIKSFEV   95 (181)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987766554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.55  E-value=2.1e-14  Score=95.38  Aligned_cols=87  Identities=22%  Similarity=0.283  Sum_probs=71.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCccccc-ccHHhhhhcCCEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVIGSF   92 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r-~~~~~~~~~~~~~v   92 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|+++++ .++..|++++++++
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii   98 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   98 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence            445789999999999999999998776 4566766643  45666776  688899999999988 89999999999999


Q ss_pred             EEEeCCCcccccc
Q 033893           93 KTKKIEFRDFYEV  105 (109)
Q Consensus        93 ~~~~~~~~~~~~~  105 (109)
                      .+++.+...+++.
T Consensus        99 lv~D~~~~~s~~~  111 (189)
T 1z06_A           99 FVYDMTNMASFHS  111 (189)
T ss_dssp             EEEETTCHHHHHT
T ss_pred             EEEECcCHHHHHH
Confidence            9999987655544

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.55  E-value=1.9e-14  Score=93.07  Aligned_cols=87  Identities=16%  Similarity=0.296  Sum_probs=70.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ++.+|+++|++|+|||||++.+.+..+. ...|+.+.+  ...+.+++  ..+.+||++|+++++..+..+++++++++.
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence            4567899999999999999999987663 455665533  34555654  678899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        85 v~d~~~~~s~~~   96 (170)
T 1r2q_A           85 VYDITNEESFAR   96 (170)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEECCCHHHHHH
Confidence            999987665544

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.55  E-value=1.5e-14  Score=95.44  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE---EEEEC-----------CEEEEEEEcCCcccccccHHhh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE---ELSIG-----------KIKFKAFDLGGHQIARRVWKDY   84 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g---~i~~~-----------~~~i~~~d~~g~~~~r~~~~~~   84 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....||.+.+..   .+.++           ...+.+||++|+++++..+..|
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   90 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF   90 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence            45789999999999999999998776 456677765433   44555           3588999999999999999999


Q ss_pred             hhcCCEEEEEEeCCCcccccc
Q 033893           85 YAKVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~~  105 (109)
                      ++++++++.+++.+...+++.
T Consensus        91 ~~~~d~~i~v~d~~~~~s~~~  111 (195)
T 3bc1_A           91 FRDAMGFLLLFDLTNEQSFLN  111 (195)
T ss_dssp             TTTCSEEEEEEETTCHHHHHT
T ss_pred             HcCCCEEEEEEECCCHHHHHH
Confidence            999999999999877665544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.54  E-value=1.9e-14  Score=92.95  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +.+|+++|.+|+|||||++.+.+..+ ....||.+... ..+.++  ...+.+||++|+++++.++..|++++++++.++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   82 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVY   82 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence            46799999999999999999998766 45566665332 234444  367889999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      +.+...+++.
T Consensus        83 d~~~~~s~~~   92 (167)
T 1c1y_A           83 SITAQSTFND   92 (167)
T ss_dssp             ETTCHHHHHT
T ss_pred             ECCCHHHHHH
Confidence            9987665544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.54  E-value=2e-14  Score=92.96  Aligned_cols=87  Identities=14%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|||||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||.+|+++++.++..|++++++++.
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            345789999999999999999998776 4566776543  45566665  578899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        84 v~d~~~~~s~~~   95 (168)
T 1z2a_A           84 VFSTTDRESFEA   95 (168)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECcCHHHHHH
Confidence            999987665544

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.54  E-value=1.2e-14  Score=94.28  Aligned_cols=87  Identities=22%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|+|||||++.+.+..+ ....|+.+.+.  ..+.+++  ..+.+||++|+++++.++..|++++++++.
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   84 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence            345789999999999999999998876 45667776543  4566665  578899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        85 v~d~~~~~s~~~   96 (170)
T 1z08_A           85 VYDITDEDSFQK   96 (170)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEECcCHHHHHH
Confidence            999887665544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=96.48  Aligned_cols=86  Identities=16%  Similarity=0.327  Sum_probs=67.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|+|||||++.+.+..+ ....|+.+  +....+.+++  ..+.+||++|+++++.++..|++++++++.++
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~  106 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY  106 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEE
Confidence            4689999999999999999998876 45566665  3345667776  57889999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      |.+...+++..
T Consensus       107 D~~~~~s~~~~  117 (192)
T 2il1_A          107 DITKKETFDDL  117 (192)
T ss_dssp             ETTCHHHHHTH
T ss_pred             ECcCHHHHHHH
Confidence            99877665543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.54  E-value=2.9e-14  Score=94.44  Aligned_cols=87  Identities=23%  Similarity=0.352  Sum_probs=71.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|+|||||++.+.+..+ ....|+.+.  ....+.+++  ..+.+||++|+++++.++..|++++++++.
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            346789999999999999999998876 456676653  345566665  678899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        94 v~d~~~~~s~~~  105 (195)
T 1x3s_A           94 VYDVTRRDTFVK  105 (195)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECcCHHHHHH
Confidence            999877665543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.54  E-value=2e-14  Score=95.68  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ..+|+++|.+|+|||||++.+.+..+ ....||.+... ..+.+++  ..+.+||++|+++++.++..|++++++++.++
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   97 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   97 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence            35789999999999999999998776 45667765433 4566666  78889999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      +.+...+++..
T Consensus        98 d~~~~~s~~~~  108 (194)
T 2atx_A           98 SVVNPASFQNV  108 (194)
T ss_dssp             ETTCHHHHHHH
T ss_pred             ECCCHHHHHHH
Confidence            99877665543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.54  E-value=2.3e-14  Score=94.96  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|++|+|||||++.+.+..+ ..+.||.+... ..+.+++  ..+.+||++|+++++.+++.|++++++++.+
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   85 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   85 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence            456789999999999999999998776 45667765332 3455554  6788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      +|.+...+++.
T Consensus        86 ~d~~~~~s~~~   96 (184)
T 1m7b_A           86 FDISRPETLDS   96 (184)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987766654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.54  E-value=1.5e-14  Score=93.60  Aligned_cols=86  Identities=14%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .-+|+++|++|+|||||++.+.+.......|+.+... ..+.+++  ..+.+||++|+++++.+++.|++++++++.+++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            3578999999999999999999876654445444322 3455665  567799999999999999999999999999999


Q ss_pred             CCCcccccc
Q 033893           97 IEFRDFYEV  105 (109)
Q Consensus        97 ~~~~~~~~~  105 (109)
                      ++...+++.
T Consensus        82 ~~~~~s~~~   90 (166)
T 3q72_A           82 VTDKGSFEK   90 (166)
T ss_dssp             TTCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            987766654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.54  E-value=5.5e-15  Score=98.18  Aligned_cols=86  Identities=15%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--cc-cccCCcccCceEEEEE-------CCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--RL-VQHQPTQHPTSEELSI-------GKIKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--~~-~~~~pt~~~~~g~i~~-------~~~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      +.+|+|+|++|||||||++++.+.  .+ ..+.||.+.+.....+       ....+.+||++|+++++.+++.|+++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            357999999999999999999985  34 3467777655444332       2467889999999999999999999999


Q ss_pred             EEEEEEeCCCc-ccccc
Q 033893           90 GSFKTKKIEFR-DFYEV  105 (109)
Q Consensus        90 ~~v~~~~~~~~-~~~~~  105 (109)
                      +++.+++++.. .+++.
T Consensus        82 ~~i~v~d~~~~~~s~~~   98 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDA   98 (184)
T ss_dssp             EEEEEEEGGGCHHHHHT
T ss_pred             EEEEEEeCCcchhHHHH
Confidence            99999998765 34443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.54  E-value=3.6e-14  Score=92.71  Aligned_cols=87  Identities=16%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....||.+.. ...+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV   87 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence            446789999999999999999998766 4566666533 24566676  5778899999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++++...+++.
T Consensus        88 ~d~~~~~s~~~   98 (181)
T 2fn4_A           88 FAINDRQSFNE   98 (181)
T ss_dssp             EETTCHHHHHH
T ss_pred             EeCCCHHHHHH
Confidence            99987665543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.54  E-value=3.5e-14  Score=93.04  Aligned_cols=87  Identities=21%  Similarity=0.340  Sum_probs=70.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|+|||||++.+.+.++ ....|+.+.+  ...+.+++  ..+.+||++|+++++..+..+++++++++.
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   90 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence            445789999999999999999998876 3455666543  34566664  578899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        91 v~d~~~~~s~~~  102 (181)
T 2efe_B           91 VFDVTNQASFER  102 (181)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEECCCHHHHHH
Confidence            999877665543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.54  E-value=2.8e-14  Score=94.53  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=70.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--------------------------------
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--------------------------------   63 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--------------------------------   63 (109)
                      +..+|+++|+.|+|||||++.+.+..+ ....||.+.+  ...+.+++                                
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            456899999999999999999998876 4566776643  34455554                                


Q ss_pred             -------EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcccccc
Q 033893           64 -------IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        64 -------~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~~~~~  105 (109)
                             ..+.+||++|+++++..+..|++++++++.+++.+...+++.
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~  134 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDR  134 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHH
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence                   788999999999999999999999999999999877665543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.54  E-value=3.2e-14  Score=94.92  Aligned_cols=87  Identities=20%  Similarity=0.317  Sum_probs=70.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|+|||||++.+.+..+ ....|+.+.+  ...+.++  ...+.+||++|+++++..+..|++++++++.
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  101 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI  101 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence            345789999999999999999998876 4566776643  3344444  3788999999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus       102 V~d~~~~~s~~~  113 (192)
T 2fg5_A          102 VYDITKQDSFYT  113 (192)
T ss_dssp             EEETTCTHHHHH
T ss_pred             EEeCCCHHHHHH
Confidence            999987765544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.54  E-value=2.4e-14  Score=96.60  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++  ..+.+||++|+++++.+++.|++++++++++
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   87 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   87 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence            456799999999999999999998776 45667776443 4556665  6888999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      +|++...+++..
T Consensus        88 ~d~~~~~s~~~~   99 (212)
T 2j0v_A           88 FSLISKASYENV   99 (212)
T ss_dssp             EETTCHHHHHHH
T ss_pred             EECCCHHHHHHH
Confidence            999877665543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.54  E-value=3.2e-14  Score=91.57  Aligned_cols=85  Identities=16%  Similarity=0.230  Sum_probs=68.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC-ceEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP-TSEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~-~~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +.+|+++|++|+|||||++.+.+..+ ....|+... ....+.+++.  .+.+||++|+++++.++..|++++++++.++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   82 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY   82 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence            46799999999999999999997766 345555542 2355666764  5889999999999999999999999999999


Q ss_pred             eCCCccccc
Q 033893           96 KIEFRDFYE  104 (109)
Q Consensus        96 ~~~~~~~~~  104 (109)
                      +.+...+++
T Consensus        83 d~~~~~s~~   91 (167)
T 1kao_A           83 SLVNQQSFQ   91 (167)
T ss_dssp             ETTCHHHHH
T ss_pred             eCCCHHHHH
Confidence            987765543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.54  E-value=1.9e-14  Score=95.86  Aligned_cols=86  Identities=24%  Similarity=0.389  Sum_probs=68.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+.++. ...|+.+.  ....+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v  100 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV  100 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEE
Confidence            357899999999999999999987763 45566553  345677776  5788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus       101 ~d~~~~~s~~~  111 (191)
T 2a5j_A          101 YDITRRETFNH  111 (191)
T ss_dssp             EETTCHHHHHT
T ss_pred             EECCCHHHHHH
Confidence            99987766554

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.53  E-value=2.1e-14  Score=96.55  Aligned_cols=86  Identities=19%  Similarity=0.295  Sum_probs=71.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|+++++.++..|++++++++++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv   87 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   87 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence            45789999999999999999998876 4566766643  45677776  4788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        88 ~d~~~~~s~~~   98 (206)
T 2bcg_Y           88 YDVTDQESFNG   98 (206)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99987765544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.53  E-value=3e-14  Score=91.78  Aligned_cols=87  Identities=14%  Similarity=0.271  Sum_probs=67.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....|+.+.. ...+.+++  ..+.+||.+|+++++.++..|++++++++.+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            356799999999999999999998776 3455655433 24456666  5788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        83 ~d~~~~~s~~~   93 (168)
T 1u8z_A           83 FSITEMESFAA   93 (168)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987665443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.53  E-value=9.4e-15  Score=106.12  Aligned_cols=85  Identities=32%  Similarity=0.505  Sum_probs=71.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .+|+|+|.+|+|||||++.+.+..+.+..||.+.....+..++..+.+||++|+++++.++..|++++++++++++.+..
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~  245 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR  245 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCS
T ss_pred             ceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCch
Confidence            47999999999999999999988887667888888888888999999999999999999999999999999999999776


Q ss_pred             ccccc
Q 033893          101 DFYEV  105 (109)
Q Consensus       101 ~~~~~  105 (109)
                      .+++.
T Consensus       246 ~s~~~  250 (329)
T 3o47_A          246 ERVNE  250 (329)
T ss_dssp             SSHHH
T ss_pred             HHHHH
Confidence            65543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.53  E-value=3e-14  Score=95.83  Aligned_cols=86  Identities=20%  Similarity=0.320  Sum_probs=71.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|+++++..+..|++++++++.+
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   99 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV   99 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            35789999999999999999998876 4566766643  45677777  6788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus       100 ~d~~~~~s~~~  110 (213)
T 3cph_A          100 YDVTDERTFTN  110 (213)
T ss_dssp             EETTCHHHHHT
T ss_pred             EECCCHHHHHH
Confidence            99887665543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.53  E-value=2.4e-15  Score=99.08  Aligned_cols=86  Identities=20%  Similarity=0.332  Sum_probs=49.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....|+.+.  ....+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   87 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence            45789999999999999999997766 356676663  345677777  7888999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        88 ~d~~~~~s~~~   98 (183)
T 2fu5_C           88 YDITNEKSFDN   98 (183)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99987766544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.53  E-value=5.4e-14  Score=92.55  Aligned_cols=88  Identities=15%  Similarity=0.177  Sum_probs=70.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....|+.+.. ...+.+++.  .+.+||++|+++++.+++.|++++++++.+
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   96 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            456789999999999999999998765 4566665532 345566664  456699999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      ++.+...+++..
T Consensus        97 ~d~~~~~s~~~~  108 (183)
T 3kkq_A           97 YSVTDKASFEHV  108 (183)
T ss_dssp             EETTCHHHHHTH
T ss_pred             EECCCHHHHHHH
Confidence            999877665543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.53  E-value=3.9e-14  Score=91.70  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=70.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|++|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||.+|.++++..+..|++++++++.
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   84 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence            346789999999999999999998875 4556666533  34556665  678899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        85 v~d~~~~~s~~~   96 (170)
T 1z0j_A           85 VYDITKEETFST   96 (170)
T ss_dssp             EEETTCHHHHHH
T ss_pred             EEECcCHHHHHH
Confidence            999877665544

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.53  E-value=2.9e-14  Score=96.75  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=71.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ...+|+++|.+|+|||||++.+.+..+ ..+.||..... ..+.+++  ..+.+||++|+++++.+++.|++++++++++
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv  106 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC  106 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence            345789999999999999999998876 44567765433 3455554  6888999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      +|++...+++..
T Consensus       107 ~D~~~~~s~~~~  118 (205)
T 1gwn_A          107 FDISRPETLDSV  118 (205)
T ss_dssp             EETTCHHHHHHH
T ss_pred             EECCCHHHHHHH
Confidence            999877666543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.53  E-value=4.1e-14  Score=93.15  Aligned_cols=87  Identities=20%  Similarity=0.247  Sum_probs=66.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++.+|+++|++|+|||||++.+.+..+ ....|+.. .....+.+++.  .+.+||++|+++++.+++.|++++++++.+
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   82 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   82 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            356789999999999999999998776 34555543 22345566764  467799999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        83 ~d~~~~~s~~~   93 (189)
T 4dsu_A           83 FAINNTKSFED   93 (189)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987655543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.53  E-value=3.6e-14  Score=94.90  Aligned_cols=88  Identities=15%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ..+.||.... ...+.+++  +.+.+||++|+++++.+++.|++++++++.+
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   98 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLC   98 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEE
Confidence            456789999999999999999998776 4566766533 24566777  4667999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      ++.+...+++..
T Consensus        99 ~d~~~~~s~~~~  110 (201)
T 2q3h_A           99 FSVVSPSSFQNV  110 (201)
T ss_dssp             EETTCHHHHHHH
T ss_pred             EECCCHHHHHHH
Confidence            999877665543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.53  E-value=2.8e-14  Score=94.93  Aligned_cols=85  Identities=21%  Similarity=0.389  Sum_probs=69.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|+|||||++.+.+..+. ...|+.+.+  ...+.+++  ..+.+||++|.++++.++..|+++++++++++
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~  105 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVF  105 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEE
Confidence            57899999999999999999988764 456665533  34455554  67889999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      +.+...+++.
T Consensus       106 D~~~~~s~~~  115 (193)
T 2oil_A          106 DLTKHQTYAV  115 (193)
T ss_dssp             ETTCHHHHHT
T ss_pred             ECCCHHHHHH
Confidence            9877665543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.53  E-value=1.7e-14  Score=93.41  Aligned_cols=86  Identities=21%  Similarity=0.325  Sum_probs=66.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .-+|+++|++|+|||||++.+.+.++ ....|+.+.+  ...+.+++  ..+.+||++|+++++..+..+++++++++.+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence            35789999999999999999998876 4566766643  34566665  6788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        83 ~d~~~~~s~~~   93 (170)
T 1g16_A           83 YDITDERTFTN   93 (170)
T ss_dssp             EETTCHHHHHT
T ss_pred             EECCCHHHHHH
Confidence            99887665544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=97.18  Aligned_cols=86  Identities=26%  Similarity=0.437  Sum_probs=64.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|.+|+|||||++.+.+..+ ....|+.+.  ....+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  104 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV  104 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence            35789999999999999999998776 455666653  345666777  6888999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus       105 ~d~~~~~s~~~  115 (200)
T 2o52_A          105 YDITSRETYNS  115 (200)
T ss_dssp             EETTCHHHHHT
T ss_pred             EECcCHHHHHH
Confidence            99987765554

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=5.1e-14  Score=91.18  Aligned_cols=86  Identities=17%  Similarity=0.149  Sum_probs=69.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +.+|+++|.+|||||||++.+.+..+ ....|+.+... ..+..++  ..+.+||++|+++++.++..|++++++++.++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   82 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEE
Confidence            45789999999999999999998776 35666665433 2344444  57889999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      +.+...+++.
T Consensus        83 d~~~~~~~~~   92 (172)
T 2erx_A           83 SITSRQSLEE   92 (172)
T ss_dssp             ETTCHHHHHT
T ss_pred             ECcCHHHHHH
Confidence            9987665544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.52  E-value=3.4e-14  Score=95.28  Aligned_cols=87  Identities=20%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|+.|+|||||++.+.+..+ ....|+.+  +....+.+++  ..+.+||++|+++++..+..|++++++++.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  106 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL  106 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence            346789999999999999999998876 45566665  3345667776  568899999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus       107 v~d~~~~~s~~~  118 (199)
T 2p5s_A          107 LYDVTCEKSFLN  118 (199)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECCChHHHHH
Confidence            999987666554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.52  E-value=6.9e-14  Score=91.20  Aligned_cols=86  Identities=23%  Similarity=0.384  Sum_probs=70.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|..|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|+++++..+..|++++++++.+
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence            45789999999999999999998876 4456666543  34556665  5788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        95 ~d~~~~~s~~~  105 (179)
T 1z0f_A           95 YDITRRSTYNH  105 (179)
T ss_dssp             EETTCHHHHHT
T ss_pred             EeCcCHHHHHH
Confidence            99887765544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.52  E-value=4.5e-14  Score=93.77  Aligned_cols=86  Identities=21%  Similarity=0.330  Sum_probs=70.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|+|||||++.+.+.++ ....|+.+.+  ...+..++  ..+.+||++|+++++..+..|++++++++.++
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~  102 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMY  102 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEE
Confidence            4789999999999999999998876 4566766643  34555554  68889999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      +.+...+++..
T Consensus       103 d~~~~~s~~~~  113 (189)
T 2gf9_A          103 DIANQESFAAV  113 (189)
T ss_dssp             ETTCHHHHHTH
T ss_pred             ECCCHHHHHHH
Confidence            99776665543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.52  E-value=4.5e-14  Score=94.58  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=70.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|.++++.++..|++++++++.+
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   87 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM   87 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence            35789999999999999999998876 4566766533  34555664  6888999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        88 ~d~~~~~s~~~   98 (203)
T 1zbd_A           88 YDITNEESFNA   98 (203)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99987665543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.52  E-value=5.2e-14  Score=94.61  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .+.+|+++|.+|+|||||++.+.+..+ ..+.|+.+.+. ..+.+++  ..+.+||++|+++++.++..|++++++++++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence            345789999999999999999998876 45667765433 5567776  4788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++++...+++.
T Consensus       104 ~d~~~~~s~~~  114 (201)
T 2gco_A          104 FSIDSPDSLEN  114 (201)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987665544

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.52  E-value=3.6e-14  Score=92.37  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc--eEEEEECC--EEEEEEEcCCccc--ccccHHhhhhcCCEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQI--ARRVWKDYYAKVIGSF   92 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~--~r~~~~~~~~~~~~~v   92 (109)
                      +..+|+++|++|+|||||++.+.+..+....|+.+.+  ...+.+++  ..+.+||++|++.  .+.+.+.|++.+++++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            3457999999999999999999988775544444433  45677776  4678999999887  5677788999999999


Q ss_pred             EEEeCCCcccccc
Q 033893           93 KTKKIEFRDFYEV  105 (109)
Q Consensus        93 ~~~~~~~~~~~~~  105 (109)
                      ++++++...+++.
T Consensus        83 ~v~d~~~~~s~~~   95 (175)
T 2nzj_A           83 IVYSIADRGSFES   95 (175)
T ss_dssp             EEEETTCHHHHHH
T ss_pred             EEEECCCHHHHHH
Confidence            9999987766554

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.52  E-value=2.8e-14  Score=96.31  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=69.1

Q ss_pred             cCCcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCC
Q 033893           14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        14 v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      ..+..++.+|+++|.+|+|||||++.+.+..+ ....|+.... ...+.+++  +.+.+||++|+++++.++..|+++++
T Consensus        24 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 4gzl_A           24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD  103 (204)
T ss_dssp             ------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             HhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            33445667899999999999999999998766 4556665432 23455565  45569999999999999999999999


Q ss_pred             EEEEEEeCCCccccccc
Q 033893           90 GSFKTKKIEFRDFYEVE  106 (109)
Q Consensus        90 ~~v~~~~~~~~~~~~~~  106 (109)
                      +++.+++.+...+++..
T Consensus       104 ~~i~v~d~~~~~s~~~~  120 (204)
T 4gzl_A          104 VFLICFSLVSPASFENV  120 (204)
T ss_dssp             EEEEEEETTCHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHH
Confidence            99999999877766543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.52  E-value=1.7e-14  Score=94.41  Aligned_cols=87  Identities=17%  Similarity=0.265  Sum_probs=59.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      +..+|+++|++|||||||++.+.+..+ ....|+.+  +....+.++   ...+.+||++|+++++..+..|++++++++
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   86 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence            345789999999999999999998776 45666665  334555555   368899999999999999999999999999


Q ss_pred             EEEeCCCcccccc
Q 033893           93 KTKKIEFRDFYEV  105 (109)
Q Consensus        93 ~~~~~~~~~~~~~  105 (109)
                      .+++.+...+++.
T Consensus        87 ~v~d~~~~~s~~~   99 (182)
T 1ky3_A           87 LVYDVTNASSFEN   99 (182)
T ss_dssp             EEEETTCHHHHHT
T ss_pred             EEEECCChHHHHH
Confidence            9999987765544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.52  E-value=4e-14  Score=94.29  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .++.+|+++|.+|||||||++.+.+..+ ....||.......+.+++  +.+.+||++|+++++     |++++++++.+
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v   92 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFV   92 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEE
Confidence            4556899999999999999999988776 446676544445778887  566779999998766     88899999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      +|++...+++.
T Consensus        93 ~d~~~~~s~~~  103 (184)
T 3ihw_A           93 FSLEDEISFQT  103 (184)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99988776654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.51  E-value=4e-14  Score=92.81  Aligned_cols=85  Identities=13%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .++.+|+++|.+|+|||||++.+.+..+.+..||.+.. ...+.+++  ..+.+||++|+++     ..|++++++++.+
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv   79 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV   79 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence            35678999999999999999999988886677877643 35566776  5678899999886     5789999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      +|++...+++...
T Consensus        80 ~D~~~~~s~~~~~   92 (178)
T 2iwr_A           80 FSLEDENSFQAVS   92 (178)
T ss_dssp             EETTCHHHHHHHH
T ss_pred             EECcCHHHHHHHH
Confidence            9998777665443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.51  E-value=5.6e-14  Score=93.91  Aligned_cols=87  Identities=14%  Similarity=0.271  Sum_probs=70.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|++|||||||++.+.+..+ ....||.+.. ...+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   92 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   92 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence            345789999999999999999998776 4455665532 35566676  4788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++++...+++.
T Consensus        93 ~d~~~~~s~~~  103 (206)
T 2bov_A           93 FSITEMESFAA  103 (206)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987665543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.51  E-value=2.1e-14  Score=98.04  Aligned_cols=86  Identities=24%  Similarity=0.369  Sum_probs=67.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|++|+|||||++.+.+..+. ...|+.+.  ....+.+++  ..+.+||++|+++++.++..|++++++++++
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV   92 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV   92 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence            357899999999999999999988763 55666653  345677777  6888999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        93 ~D~~~~~s~~~  103 (223)
T 3cpj_B           93 YDISKSSSYEN  103 (223)
T ss_dssp             EC-CCHHHHHH
T ss_pred             EeCCCHHHHHH
Confidence            99887766554

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.51  E-value=6.9e-14  Score=94.46  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC---CEEEEEEEcCCcccccc-cHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG---KIKFKAFDLGGHQIARR-VWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~---~~~i~~~d~~g~~~~r~-~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+....|+...+...+.++   +..+.+||++|+++++. +++.|++++++++.+
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v   85 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV   85 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEE
Confidence            45679999999999999999999887755445555666667777   57899999999999988 899999999999999


Q ss_pred             EeCCCc
Q 033893           95 KKIEFR  100 (109)
Q Consensus        95 ~~~~~~  100 (109)
                      +|.+..
T Consensus        86 ~d~~~~   91 (214)
T 2fh5_B           86 VDSAAF   91 (214)
T ss_dssp             EETTTH
T ss_pred             EECCCc
Confidence            998763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.51  E-value=7e-14  Score=91.83  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=70.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....||..... ..+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   83 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC   83 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence            356789999999999999999998776 45666665332 3556666  4566999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        84 ~d~~~~~s~~~   94 (186)
T 1mh1_A           84 FSLVSPASFEN   94 (186)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCChhhHHH
Confidence            99987665544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.51  E-value=4e-14  Score=94.83  Aligned_cols=87  Identities=15%  Similarity=0.274  Sum_probs=70.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....|+.+.+  ...+.+++  ..+.+||++|+++++.++..|++++++++.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   86 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence            345789999999999999999998876 4566666533  34555655  688999999999999999999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus        87 v~d~~~~~s~~~   98 (207)
T 1vg8_A           87 VFDVTAPNTFKT   98 (207)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECCCHHHHHH
Confidence            999877665543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.50  E-value=7.4e-14  Score=91.63  Aligned_cols=87  Identities=14%  Similarity=0.271  Sum_probs=69.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|++|+|||||++.+.+..+ ....|+.... ...+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   96 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence            446799999999999999999998776 3455555432 24456666  4788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        97 ~d~~~~~s~~~  107 (187)
T 2a9k_A           97 FSITEMESFAA  107 (187)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99987655443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.50  E-value=9.2e-14  Score=92.53  Aligned_cols=89  Identities=17%  Similarity=0.282  Sum_probs=67.0

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      .+..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++  +.+.+||++|+++++.+ ..|+++++++++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il   97 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV   97 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence            3456799999999999999999998776 45667766432 3455665  57778999999988875 789999999999


Q ss_pred             EEeCCCcccccccc
Q 033893           94 TKKIEFRDFYEVEI  107 (109)
Q Consensus        94 ~~~~~~~~~~~~~~  107 (109)
                      +++++...+++...
T Consensus        98 v~d~~~~~s~~~~~  111 (187)
T 3c5c_A           98 VYSVDSRQSFDSSS  111 (187)
T ss_dssp             EEETTCHHHHHHHH
T ss_pred             EEECCCHHHHHHHH
Confidence            99998776665443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.50  E-value=1.4e-14  Score=96.42  Aligned_cols=86  Identities=20%  Similarity=0.326  Sum_probs=69.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .+|+++|.+|+|||||++.+.+..+ ....|+.+.+  ...+.++  +..+.+||++|+++++.++..|++++++++.++
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  103 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY  103 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEE
Confidence            4789999999999999999998765 4455665543  3444444  478999999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      +.+...+++..
T Consensus       104 d~~~~~s~~~~  114 (191)
T 3dz8_A          104 DITNEESFNAV  114 (191)
T ss_dssp             ETTCHHHHHTH
T ss_pred             ECcCHHHHHHH
Confidence            99877666543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.50  E-value=7.7e-14  Score=94.14  Aligned_cols=87  Identities=17%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .+.+|+++|.+|+|||||++.+.+..+. ...|+.+... ..+.+++  ..+.+||++|+++++.++..|++++++++.+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence            3457899999999999999999987763 4556665433 4466676  5788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++++...+++.
T Consensus       104 ~d~~~~~s~~~  114 (207)
T 2fv8_A          104 FSVDSPDSLEN  114 (207)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99987665544

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.49  E-value=1.2e-13  Score=92.29  Aligned_cols=87  Identities=20%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      .+..+|+++|.+|+|||||++.+.+.++ ....||.+... ..+.+++  ..+.+||++|+++ +..+..|++++++++.
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil  104 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL  104 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence            4556899999999999999999998776 45667665433 3456665  5788999999988 8899999999999999


Q ss_pred             EEeCCCcccccc
Q 033893           94 TKKIEFRDFYEV  105 (109)
Q Consensus        94 ~~~~~~~~~~~~  105 (109)
                      +++.+...+++.
T Consensus       105 v~D~~~~~s~~~  116 (196)
T 2atv_A          105 VYDITDRGSFEE  116 (196)
T ss_dssp             EEETTCHHHHHT
T ss_pred             EEECcCHHHHHH
Confidence            999987766554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.49  E-value=5.6e-14  Score=94.47  Aligned_cols=87  Identities=14%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccc-cHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~-~~~~~~~~~~~~v~~   94 (109)
                      .+|+++|.+|+|||||++.+.+... ....|+.+  +....+.+++  ..+.+||++|+++.+. +++.|++++++++++
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv  103 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIV  103 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEE
Confidence            5789999999999999999986543 23334433  3345677776  4667899999988765 888999999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      ++++...+++...
T Consensus       104 ~d~~~~~s~~~~~  116 (195)
T 3cbq_A          104 FSVTDRRSFSKVP  116 (195)
T ss_dssp             EETTCHHHHHTHH
T ss_pred             EECCCHHHHHHHH
Confidence            9998877665543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.49  E-value=6e-15  Score=98.66  Aligned_cols=88  Identities=15%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC--cc-cccCCccc--CceEEEEEC----CEEEEEEEcCCcccccccHHhhhhcCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE--RL-VQHQPTQH--PTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~--~~-~~~~pt~~--~~~g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      +..+|+++|++|+|||||++.+.+.  .+ ....||.+  +....+.++    ...+.+||++|+++++.++..|+++++
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            3457899999999999999999987  55 45667765  445677777    468899999999999999999999999


Q ss_pred             EEEEEEeCCCccccccc
Q 033893           90 GSFKTKKIEFRDFYEVE  106 (109)
Q Consensus        90 ~~v~~~~~~~~~~~~~~  106 (109)
                      +++.+++.+...+++..
T Consensus        99 ~~i~v~d~~~~~s~~~~  115 (208)
T 2yc2_C           99 YAILVFDVSSMESFESC  115 (208)
T ss_dssp             EEEEEEETTCHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHH
Confidence            99999999877665543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.49  E-value=1.2e-13  Score=91.84  Aligned_cols=87  Identities=15%  Similarity=0.140  Sum_probs=69.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|||||||++.+.+..+ ....|+.+... ..+..++  ..+.+||++|+++++.++..|++++++++++
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   86 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV   86 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence            446799999999999999999998776 34566665333 2344454  5788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus        87 ~d~~~~~s~~~   97 (199)
T 2gf0_A           87 FSVTSKQSLEE   97 (199)
T ss_dssp             EETTCHHHHHT
T ss_pred             EECcCHHHHHH
Confidence            99987665544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.49  E-value=2.1e-14  Score=104.81  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=64.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc----ccCCcccCceEEEEECCEEEEEEEcCCcccccc---cHHhhhhcCCEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV----QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR---VWKDYYAKVIGSFKT   94 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~----~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~---~~~~~~~~~~~~v~~   94 (109)
                      +|+++|++|+|||||++.+.+..+.    ...||.+++..++. ....+.+||++||++++.   .++.||+++++++.+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            5799999999999999988765443    25688887776652 247899999999999975   469999999999999


Q ss_pred             EeCCCc
Q 033893           95 KKIEFR  100 (109)
Q Consensus        95 ~~~~~~  100 (109)
                      +|.+..
T Consensus        80 ~Ditd~   85 (331)
T 3r7w_B           80 IDSQDE   85 (331)
T ss_dssp             CCCSSC
T ss_pred             EECCch
Confidence            998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.49  E-value=1.4e-13  Score=88.33  Aligned_cols=85  Identities=19%  Similarity=0.265  Sum_probs=67.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +.+|+++|.+|||||||++.+.+..+ ....|+.... ...+.+++  ..+.+||.+|+++++..+..|+.++++++.++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence            45789999999999999999998766 3455555432 34556665  46788999999999999999999999999999


Q ss_pred             eCCCccccc
Q 033893           96 KIEFRDFYE  104 (109)
Q Consensus        96 ~~~~~~~~~  104 (109)
                      +.+...+++
T Consensus        83 d~~~~~~~~   91 (166)
T 2ce2_X           83 AINNTKSFE   91 (166)
T ss_dssp             ETTCHHHHH
T ss_pred             ECCCHHHHH
Confidence            987665544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.49  E-value=4e-14  Score=95.05  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++++.+..+ ....||.+... ..+.++  ...+.+||++|+++++.++..|++++++++.+
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  102 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV  102 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence            456789999999999999999998876 34556655332 233333  47788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus       103 ~d~~~~~s~~~  113 (201)
T 3oes_A          103 YSVTSLHSFQV  113 (201)
T ss_dssp             EETTCHHHHHH
T ss_pred             EeCCCHHHHHH
Confidence            99987665544

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.49  E-value=6.2e-14  Score=95.27  Aligned_cols=88  Identities=17%  Similarity=0.284  Sum_probs=52.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+.+..+ ....||.... ...+.+++  ..+.+||++|+++++.+++.|++++++++.+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC  112 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence            446789999999999999999998776 3456665432 34556666  4788999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      ++.+...+++..
T Consensus       113 ~d~~~~~s~~~~  124 (214)
T 2j1l_A          113 FDVTSPNSFDNI  124 (214)
T ss_dssp             EETTCHHHHHHH
T ss_pred             EECcCHHHHHHH
Confidence            999877665543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.48  E-value=1.1e-13  Score=99.47  Aligned_cols=86  Identities=15%  Similarity=0.293  Sum_probs=72.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--ccc--ccCCcccCceEEEEE-CCEEEEEEEcCCcccc-----cccHHhhhhcCC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--QHQPTQHPTSEELSI-GKIKFKAFDLGGHQIA-----RRVWKDYYAKVI   89 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--~~~pt~~~~~g~i~~-~~~~i~~~d~~g~~~~-----r~~~~~~~~~~~   89 (109)
                      ..+|+++|.+|+|||||++.+.+.  .+.  ...||.+...+.+.+ ++..+.+||++|++++     +.+++.|+++++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad   82 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ   82 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence            457899999999999999998876  332  466788887888877 5689999999999988     789999999999


Q ss_pred             EEEEEEeCCCcccccc
Q 033893           90 GSFKTKKIEFRDFYEV  105 (109)
Q Consensus        90 ~~v~~~~~~~~~~~~~  105 (109)
                      +++.++|.+...+++.
T Consensus        83 ~vi~V~D~t~~~s~~~   98 (307)
T 3r7w_A           83 VLIHVFDVESTEVLKD   98 (307)
T ss_dssp             EEEEEEETTCSCHHHH
T ss_pred             EEEEEEECCChhhHHH
Confidence            9999999987765543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.48  E-value=7.5e-14  Score=90.53  Aligned_cols=87  Identities=13%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-cc--CCcccCceEEEEECC--EEEEEEEcCCcccccc-cHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QH--QPTQHPTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~--~pt~~~~~g~i~~~~--~~i~~~d~~g~~~~r~-~~~~~~~~~~~~v~~   94 (109)
                      .+|+++|++|+|||||++.+.+.... ..  .++.......+.+++  ..+.+||++|+++++. ++..|++++++++.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v   82 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV   82 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence            36899999999999999999876542 22  223334456667776  5677999999998876 788889999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      ++++...+++...
T Consensus        83 ~d~~~~~s~~~~~   95 (169)
T 3q85_A           83 FSVTDRRSFSKVP   95 (169)
T ss_dssp             EETTCHHHHHTHH
T ss_pred             EECCChHHHHHHH
Confidence            9998877665543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.48  E-value=4.9e-13  Score=87.29  Aligned_cols=82  Identities=23%  Similarity=0.282  Sum_probs=62.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCc--ccCceEEEEECCEEEEEEEcCCccccc------ccHHhhhh--cC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPT--QHPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--KV   88 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt--~~~~~g~i~~~~~~i~~~d~~g~~~~r------~~~~~~~~--~~   88 (109)
                      +.+++++|++|+|||||++++.+..+ ....|+  ..+..+.+.+++..+.+||++|+++++      .+.+.|++  ++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   82 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP   82 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence            35789999999999999999998764 344453  345567888889999999999988764      45577776  89


Q ss_pred             CEEEEEEeCCCcc
Q 033893           89 IGSFKTKKIEFRD  101 (109)
Q Consensus        89 ~~~v~~~~~~~~~  101 (109)
                      ++++.++|.+...
T Consensus        83 ~~~i~v~D~~~~~   95 (165)
T 2wji_A           83 DLVVNIVDATALE   95 (165)
T ss_dssp             SEEEEEEETTCHH
T ss_pred             CEEEEEecCCchh
Confidence            9999999986543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.48  E-value=1.3e-14  Score=96.03  Aligned_cols=80  Identities=20%  Similarity=0.159  Sum_probs=61.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccccc-----------CCcccCceEEE---EEC--CEEEEEEEcCCcccccccHH
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-----------QPTQHPTSEEL---SIG--KIKFKAFDLGGHQIARRVWK   82 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~-----------~pt~~~~~g~i---~~~--~~~i~~~d~~g~~~~r~~~~   82 (109)
                      ...+|+++|.+|+|||||++.+.+.....+           .||.+.+....   .++  ...+.+||++|+++++.+|+
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   92 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK   92 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence            345789999999999999998887644332           33443322111   222  36789999999999999999


Q ss_pred             hhhhcCCEEEEEEeCC
Q 033893           83 DYYAKVIGSFKTKKIE   98 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~   98 (109)
                      .|++++++++.++|.+
T Consensus        93 ~~~~~~d~~i~v~D~~  108 (198)
T 3t1o_A           93 LILRGVDGIVFVADSA  108 (198)
T ss_dssp             HHTTTCCEEEEEEECC
T ss_pred             HHHhcCCEEEEEEECC
Confidence            9999999999999987

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.48  E-value=1.5e-13  Score=89.82  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ..+..+|+++|++|||||||++.+.+..+. ...|+..  +....+.+++..+.+||++|+++++..+..++..+++++.
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            445678999999999999999999987763 3445443  4446788899999999999999999999999999999999


Q ss_pred             EEeCCC
Q 033893           94 TKKIEF   99 (109)
Q Consensus        94 ~~~~~~   99 (109)
                      +++.+.
T Consensus        85 v~d~~~   90 (178)
T 2lkc_A           85 VVAADD   90 (178)
T ss_dssp             EEETTC
T ss_pred             EEECCC
Confidence            998765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.47  E-value=3e-14  Score=96.46  Aligned_cols=86  Identities=19%  Similarity=0.284  Sum_probs=68.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC------------CEEEEEEEcCCcccccccHHhh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG------------KIKFKAFDLGGHQIARRVWKDY   84 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~------------~~~i~~~d~~g~~~~r~~~~~~   84 (109)
                      ..+|+++|++|+|||||++.+.+..+ ....||.+.+  ...+.++            ...+.+||++|+++++..+..|
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~  104 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF  104 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence            35789999999999999999998766 3455665533  2345554            4678899999999999999999


Q ss_pred             hhcCCEEEEEEeCCCcccccc
Q 033893           85 YAKVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~~  105 (109)
                      ++++++++.+++.+...+++.
T Consensus       105 ~~~~d~iilV~D~~~~~s~~~  125 (217)
T 2f7s_A          105 FRDAMGFLLMFDLTSQQSFLN  125 (217)
T ss_dssp             HTTCCEEEEEEETTCHHHHHH
T ss_pred             hcCCCEEEEEEECcCHHHHHH
Confidence            999999999999877665543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.47  E-value=3e-14  Score=93.44  Aligned_cols=89  Identities=17%  Similarity=0.154  Sum_probs=60.6

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      .+..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++  ..+.+||++|+++++.++..+++++++++.
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            3457899999999999999999998766 34556654221 2233444  456699999999999999999999999999


Q ss_pred             EEeCCCccccccc
Q 033893           94 TKKIEFRDFYEVE  106 (109)
Q Consensus        94 ~~~~~~~~~~~~~  106 (109)
                      +++.+...+++..
T Consensus        86 v~d~~~~~s~~~~   98 (182)
T 3bwd_D           86 AFSLISKASYENV   98 (182)
T ss_dssp             EEETTCHHHHHHH
T ss_pred             EEECCCHHHHHHH
Confidence            9999877665543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.46  E-value=1.8e-13  Score=90.65  Aligned_cols=87  Identities=17%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++.+|+++|.+|||||||++.+.+..+ ....|+.... ...+.+++  ..+.+||.+|+++++.++..|++++++++.+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   99 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence            345789999999999999999998765 3445554422 34566666  5688999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++++...+++.
T Consensus       100 ~d~~~~~s~~~  110 (190)
T 3con_A          100 FAINNSKSFAD  110 (190)
T ss_dssp             EETTCHHHHHH
T ss_pred             EECcCHHHHHH
Confidence            99877665443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.46  E-value=8.9e-13  Score=86.85  Aligned_cols=85  Identities=19%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccccccc--------HHhhhhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYAK   87 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~~   87 (109)
                      ..+|+|+|++|+|||||++++.+..+.  ...|  +..+..+.+.+++..+.+||++|+++....        ...++++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   83 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   83 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence            457899999999999999999987542  2222  233456888999999999999998653211        1246889


Q ss_pred             CCEEEEEEeCCCccccc
Q 033893           88 VIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        88 ~~~~v~~~~~~~~~~~~  104 (109)
                      +++++.++|.+...+++
T Consensus        84 ad~~i~v~D~~~~~s~~  100 (172)
T 2gj8_A           84 ADRVLFMVDGTTTDAVD  100 (172)
T ss_dssp             CSEEEEEEETTTCCCCS
T ss_pred             CCEEEEEEECCCCCCHH
Confidence            99999999987765544

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.45  E-value=6.7e-14  Score=95.18  Aligned_cols=88  Identities=18%  Similarity=0.250  Sum_probs=68.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEE--EEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEE--LSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~--i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ...+|+++|.+|+|||||++.+....+ ....|+.+.+...  +.+++  ..+.+||++|+++++.++..|+++++++++
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   93 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   93 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence            345789999999999999999654444 4556766644433  33343  678899999999999999999999999999


Q ss_pred             EEeCCCccccccc
Q 033893           94 TKKIEFRDFYEVE  106 (109)
Q Consensus        94 ~~~~~~~~~~~~~  106 (109)
                      +++.+...+++..
T Consensus        94 v~d~~~~~s~~~~  106 (221)
T 3gj0_A           94 MFDVTSRVTYKNV  106 (221)
T ss_dssp             EEETTCHHHHHTH
T ss_pred             EEECCCHHHHHHH
Confidence            9999877665543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.44  E-value=8.5e-14  Score=94.26  Aligned_cols=88  Identities=22%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceEEEEE--C-C--EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSEELSI--G-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSF   92 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g~i~~--~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v   92 (109)
                      ...+|+++|.+|||||||++.+.+..+. ...|+.+.....+.+  . +  ..+.+||++|+++++.++..|++++++++
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI   89 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence            3457899999999999999999977663 445665543333322  2 2  77899999999999999999999999999


Q ss_pred             EEEeCCCccccccc
Q 033893           93 KTKKIEFRDFYEVE  106 (109)
Q Consensus        93 ~~~~~~~~~~~~~~  106 (109)
                      .+++.+...+++..
T Consensus        90 ~v~d~~~~~s~~~~  103 (218)
T 4djt_A           90 LFFDVTSRITCQNL  103 (218)
T ss_dssp             EEEETTCHHHHHTH
T ss_pred             EEEeCCCHHHHHHH
Confidence            99999877665543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.44  E-value=3.4e-13  Score=90.38  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=63.8

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCc--ccccCCcccCc--eEEEEECCE--EEEEEEcCCccc-ccccHHhhhhcCCE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQHPT--SEELSIGKI--KFKAFDLGGHQI-ARRVWKDYYAKVIG   90 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~--~~~~~pt~~~~--~g~i~~~~~--~i~~~d~~g~~~-~r~~~~~~~~~~~~   90 (109)
                      ....+|+|+|.+|+|||||++.+.+.+  +.+..|+.+.+  ...+.+++.  .+.+||+.+++. .+.+++.|++.+++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            345689999999999999999998643  33333334333  356777775  456789988766 56788899999999


Q ss_pred             EEEEEeCCCcccccccc
Q 033893           91 SFKTKKIEFRDFYEVEI  107 (109)
Q Consensus        91 ~v~~~~~~~~~~~~~~~  107 (109)
                      ++++++++...+++...
T Consensus        84 ~i~v~dv~~~~s~~~~~  100 (192)
T 2cjw_A           84 YLIVYSITDRASFEKAS  100 (192)
T ss_dssp             EEEEEETTCHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHH
Confidence            99999998877766543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=2e-12  Score=85.34  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcc--cCceEEEEECCEEEEEEEcCCccccc------ccHHhhhhc--
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYAK--   87 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r------~~~~~~~~~--   87 (109)
                      ++.+|+++|++|||||||++++.+..+ ....|+.  .+..+.+.+++..+.+||++|+++++      .++..|+..  
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   85 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence            456789999999999999999998654 3444543  34567888889999999999988764      467888864  


Q ss_pred             CCEEEEEEeCCC
Q 033893           88 VIGSFKTKKIEF   99 (109)
Q Consensus        88 ~~~~v~~~~~~~   99 (109)
                      +++++.+.|.+.
T Consensus        86 ~~~~i~v~d~~~   97 (188)
T 2wjg_A           86 PDLVVNIVDATA   97 (188)
T ss_dssp             CSEEEEEEEGGG
T ss_pred             CCEEEEEecchh
Confidence            899998888754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.41  E-value=3e-13  Score=90.55  Aligned_cols=82  Identities=13%  Similarity=0.188  Sum_probs=60.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEE--E---CCEEEEEEEcCCccccccc-H--HhhhhcCCE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS--I---GKIKFKAFDLGGHQIARRV-W--KDYYAKVIG   90 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~--~---~~~~i~~~d~~g~~~~r~~-~--~~~~~~~~~   90 (109)
                      +..+|+++|.+|+|||||++.+.+.......+...+....+.  +   ....+.+||++|+++++.. |  +.|++++++
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA   98 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence            446899999999999999999887543332222223323322  2   2378999999999997555 4  899999999


Q ss_pred             EEEEEeCCCc
Q 033893           91 SFKTKKIEFR  100 (109)
Q Consensus        91 ~v~~~~~~~~  100 (109)
                      ++.++|.+..
T Consensus        99 ~i~v~d~~~~  108 (196)
T 3llu_A           99 LIYVIDAQDD  108 (196)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEECCCc
Confidence            9999998775

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.40  E-value=8.6e-14  Score=97.02  Aligned_cols=50  Identities=30%  Similarity=0.448  Sum_probs=46.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+||||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~   70 (235)
T 3tif_A           20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--------DKPTEGEVYIDNIKTN   70 (235)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECT
T ss_pred             eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCceEEEECCEEcc
Confidence            68899999999986 99999999999999999999        8889999999998664

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.39  E-value=1.4e-14  Score=97.21  Aligned_cols=86  Identities=20%  Similarity=0.295  Sum_probs=67.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ..+|+++|.+|+|||||++.+.+..+ ....|+.+  +....+.+++  +.+.+||++|+++++.++..|++++++++.+
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV  112 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence            35789999999999999999998765 34455554  4456677777  6788999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus       113 ~d~~~~~s~~~  123 (199)
T 3l0i_B          113 YDVTDQESFNN  123 (199)
T ss_dssp             C-CCCSHHHHH
T ss_pred             EECCCHHHHHH
Confidence            99887766544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.39  E-value=1.1e-13  Score=95.76  Aligned_cols=50  Identities=26%  Similarity=0.369  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++.
T Consensus        19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   69 (224)
T 2pcj_A           19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL--------DAPTEGKVFLEGKEVD   69 (224)
T ss_dssp             EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--------SCCSEEEEEETTEECC
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            57899999999986 99999999999999999998        7888999999998654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.39  E-value=1.6e-13  Score=96.73  Aligned_cols=49  Identities=14%  Similarity=0.323  Sum_probs=45.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~   71 (257)
T 1g6h_A           22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--------LKADEGRVYFENKDI   71 (257)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred             eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEC
Confidence            67899999999986 99999999999999999999        888899999999765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.38  E-value=8.3e-13  Score=90.53  Aligned_cols=88  Identities=11%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCc--ccccCCcccCc--eEEEEECCE--EEEEEEcCCccc-ccccHHhhhhcCCEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQHPT--SEELSIGKI--KFKAFDLGGHQI-ARRVWKDYYAKVIGSF   92 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~--~~~~~pt~~~~--~g~i~~~~~--~i~~~d~~g~~~-~r~~~~~~~~~~~~~v   92 (109)
                      ..+|+|+|.+|+|||||++++.+.+  +.+..|+.+.+  ...+.+++.  .+.+||+.|++. .+.+.+.|++.+++++
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~i  116 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL  116 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEE
Confidence            3578999999999999999999753  33433444433  356777775  456799998876 5667788899999999


Q ss_pred             EEEeCCCcccccccc
Q 033893           93 KTKKIEFRDFYEVEI  107 (109)
Q Consensus        93 ~~~~~~~~~~~~~~~  107 (109)
                      ++++++...+++...
T Consensus       117 lVydvt~~~sf~~~~  131 (211)
T 2g3y_A          117 IVYSITDRASFEKAS  131 (211)
T ss_dssp             EEEETTCHHHHHHHH
T ss_pred             EEEECCCHHHHHHHH
Confidence            999998877766543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.08  E-value=3.7e-14  Score=95.31  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGS   91 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~   91 (109)
                      +..+..+|+++|.+|+|||||++.+.+..+ ....||.... ...+.+++  ..+.+||++|+++++.++..|+++++++
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            344566799999999999999999997766 3455555422 23444554  4566999999999999999999999999


Q ss_pred             EEEEeCCCccccccc
Q 033893           92 FKTKKIEFRDFYEVE  106 (109)
Q Consensus        92 v~~~~~~~~~~~~~~  106 (109)
                      +.+++.+...+++..
T Consensus       106 ilv~D~~~~~s~~~~  120 (204)
T 3th5_A          106 LICFSLVSPASFENV  120 (204)
Confidence            999998777666554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.38  E-value=1.3e-13  Score=98.24  Aligned_cols=49  Identities=20%  Similarity=0.346  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--------~~p~~G~I~~~G~~i   72 (275)
T 3gfo_A           23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--------LKPSSGRILFDNKPI   72 (275)
T ss_dssp             EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCeEEEECCEEC
Confidence            68899999999986 99999999999999999999        888999999999876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.37  E-value=1.8e-13  Score=96.76  Aligned_cols=50  Identities=16%  Similarity=0.375  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++.
T Consensus        21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~~   71 (262)
T 1b0u_A           21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGAIIVNGQNIN   71 (262)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECC
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEcc
Confidence            57899999999986 99999999999999999999        8888999999998653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.36  E-value=2.2e-13  Score=95.11  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~   70 (240)
T 1ji0_A           21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--------VRAQKGKIIFNGQDI   70 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEC
Confidence            57889999999986 99999999999999999999        888899999999765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.36  E-value=2.2e-13  Score=96.56  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~i   88 (263)
T 2olj_A           39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--------EDFDEGEIIIDGINL   88 (263)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEES
T ss_pred             EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--------CCCCCcEEEECCEEC
Confidence            57889999999986 99999999999999999999        888899999999765

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.35  E-value=1.6e-13  Score=97.38  Aligned_cols=50  Identities=22%  Similarity=0.395  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~   76 (266)
T 4g1u_C           26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--------LSPSHGECHLLGQNLN   76 (266)
T ss_dssp             EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS--------SCCSSCEEEETTEETT
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECCEECC
Confidence            57899999999986 99999999999999999999        7888999999998654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.35  E-value=3e-12  Score=91.27  Aligned_cols=87  Identities=16%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECCEE--EEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGKIK--FKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~~~--i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ...+|+++|.+|+|||||++.+.+..+ ....||.... ...+.+++..  +.+||++|+++++..+..|++++++++.+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            346799999999999999999997766 4556665432 3455667654  45999999999999999999999999999


Q ss_pred             EeCCCcccccc
Q 033893           95 KKIEFRDFYEV  105 (109)
Q Consensus        95 ~~~~~~~~~~~  105 (109)
                      ++.+...+++.
T Consensus       234 ~d~~~~~s~~~  244 (332)
T 2wkq_A          234 FSLVSPASFHH  244 (332)
T ss_dssp             EETTCHHHHHH
T ss_pred             EeCCCHHHHHH
Confidence            99987766544

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.9e-13  Score=90.68  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=59.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc----CCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~----~~~~v~~   94 (109)
                      +..+|+++|++|||||||++.+.+..+....++..+..+ ..+.+..+.+||++|.+.++..|..|+.+    +++++.+
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v  125 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM  125 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEE
Confidence            345789999999999999999998765432222222221 12255678899999999999999999987    8999999


Q ss_pred             EeCC-Ccccc
Q 033893           95 KKIE-FRDFY  103 (109)
Q Consensus        95 ~~~~-~~~~~  103 (109)
                      +|.+ ...++
T Consensus       126 ~d~~~~~~~~  135 (193)
T 2ged_A          126 VDSTVDPKKL  135 (193)
T ss_dssp             EETTCCHHHH
T ss_pred             EECCCCchhH
Confidence            9987 44443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.35  E-value=3.9e-13  Score=99.09  Aligned_cols=50  Identities=30%  Similarity=0.458  Sum_probs=46.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+||||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~p~~G~I~i~G~~i~   69 (359)
T 3fvq_A           19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF--------EQPDSGEISLSGKTIF   69 (359)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred             EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence            57899999999986 99999999999999999999        8899999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.35  E-value=3.4e-13  Score=91.28  Aligned_cols=85  Identities=24%  Similarity=0.272  Sum_probs=63.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc----CCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~----~~~~v~~   94 (109)
                      +..+|+++|++|+|||||++++.+..+....++..+..+. .+.+..+.+||++|+++++..+..|+++    +++++.+
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v   89 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   89 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-EeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEE
Confidence            4567899999999999999999987654322222222111 1245678899999999999999999988    8999999


Q ss_pred             EeCC-Cccccc
Q 033893           95 KKIE-FRDFYE  104 (109)
Q Consensus        95 ~~~~-~~~~~~  104 (109)
                      +|.+ ...+++
T Consensus        90 ~D~~~~~~~~~  100 (218)
T 1nrj_B           90 VDSTVDPKKLT  100 (218)
T ss_dssp             EETTSCTTCCH
T ss_pred             EECCCChHHHH
Confidence            9988 444443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.33  E-value=3.1e-13  Score=94.86  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~i~g~~~   73 (247)
T 2ff7_A           24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--------YIPENGQVLIDGHDL   73 (247)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEET
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEh
Confidence            67899999999986 99999999999999999999        788899999999764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.33  E-value=4.2e-13  Score=99.11  Aligned_cols=50  Identities=22%  Similarity=0.345  Sum_probs=46.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL--------~~p~~G~I~i~G~~i~   93 (366)
T 3tui_C           43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--------ERPTEGSVLVDGQELT   93 (366)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECS
T ss_pred             EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            68899999999997 99999999999999999999        8889999999998765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.33  E-value=4.9e-13  Score=94.38  Aligned_cols=49  Identities=27%  Similarity=0.364  Sum_probs=44.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~~   79 (256)
T 1vpl_A           30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--------IKPSSGIVTVFGKNV   79 (256)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEET
T ss_pred             EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEC
Confidence            57889999999986 99999999999999999999        888899999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.32  E-value=4.2e-13  Score=92.54  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=44.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~~   73 (214)
T 1sgw_A           24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--------LKPLKGEIIYNGVPI   73 (214)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEG
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEh
Confidence            57889999999986 99999999999999999998        788899999999764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.32  E-value=4.8e-13  Score=94.73  Aligned_cols=49  Identities=27%  Similarity=0.344  Sum_probs=45.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~~~   71 (266)
T 2yz2_A           22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--------IEPTSGDVLYDGERK   71 (266)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEECCEEC
Confidence            67899999999986 99999999999999999999        788899999999765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.32  E-value=4.3e-13  Score=95.31  Aligned_cols=49  Identities=20%  Similarity=0.367  Sum_probs=45.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++
T Consensus        34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~i   83 (271)
T 2ixe_A           34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--------YQPTGGKVLLDGEPL   83 (271)
T ss_dssp             CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEG
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCCEEEECCEEc
Confidence            67899999999986 99999999999999999999        888899999999765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.32  E-value=3.8e-13  Score=94.05  Aligned_cols=50  Identities=26%  Similarity=0.439  Sum_probs=45.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~   67 (243)
T 1mv5_A           17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--------YQPTAGEITIDGQPID   67 (243)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--------SCCSBSCEEETTEEST
T ss_pred             eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEhh
Confidence            67899999999986 99999999999999999998        7788999999997653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.32  E-value=1.4e-11  Score=79.05  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccc-------ccccHHhhhhcCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQI-------ARRVWKDYYAKVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~-------~r~~~~~~~~~~~~   90 (109)
                      +|+++|++|+|||||++.+.+..+.  ...|  +..+....+..++..+.+||.+|...       .+..+..+++.+++
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   82 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEV   82 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCE
Confidence            6899999999999999999987642  2222  22344567778889999999999876       45567788999999


Q ss_pred             EEEEEeCCCc
Q 033893           91 SFKTKKIEFR  100 (109)
Q Consensus        91 ~v~~~~~~~~  100 (109)
                      ++.+++.+..
T Consensus        83 ~i~v~d~~~~   92 (161)
T 2dyk_A           83 VLFAVDGRAE   92 (161)
T ss_dssp             EEEEEESSSC
T ss_pred             EEEEEECCCc
Confidence            9999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.32  E-value=5.9e-13  Score=98.79  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=46.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+||||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~p~~G~I~i~G~~~~   68 (381)
T 3rlf_A           18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--------ETITSGDLFIGEKRMN   68 (381)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC--------CCCCCeEEEECCEECC
Confidence            57899999999987 99999999999999999999        8889999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.31  E-value=3.7e-13  Score=96.07  Aligned_cols=49  Identities=29%  Similarity=0.346  Sum_probs=44.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~~   85 (279)
T 2ihy_A           36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--------EPATSGTVNLFGKMP   85 (279)
T ss_dssp             EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTBCC
T ss_pred             EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCeEEEECCEEc
Confidence            67899999999986 99999999999999999999        888899999998654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.30  E-value=1.1e-12  Score=97.15  Aligned_cols=50  Identities=26%  Similarity=0.445  Sum_probs=46.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~~~   68 (372)
T 1g29_1           18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--------EEPSRGQIYIGDKLVA   68 (372)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred             EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC--------CCCCccEEEECCEECc
Confidence            57899999999986 99999999999999999999        8889999999998875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.30  E-value=1e-12  Score=91.88  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .|+++++++++ ++ +|+|+||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~   62 (240)
T 2onk_A           14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI--------VKPDRGEVRLNGADI   62 (240)
T ss_dssp             EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEC
T ss_pred             EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEC
Confidence            37889999988 76 99999999999999999999        788899999999765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.30  E-value=1.5e-12  Score=85.73  Aligned_cols=75  Identities=19%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCC-----------cccccccHHhhhhc-C
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYYAK-V   88 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g-----------~~~~r~~~~~~~~~-~   88 (109)
                      +|+++|++|+|||||++.+.+..+ ....|+.......+.++  .+.+||++|           +++++..+..|+++ +
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA   80 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhh
Confidence            689999999999999999998876 35566666555666666  567889999           77788889999887 7


Q ss_pred             CEEEEEEeCC
Q 033893           89 IGSFKTKKIE   98 (109)
Q Consensus        89 ~~~v~~~~~~   98 (109)
                      ++++.++++.
T Consensus        81 ~~~~~v~~v~   90 (190)
T 2cxx_A           81 KNIDVAVLVV   90 (190)
T ss_dssp             GGCCEEEEEE
T ss_pred             ccCCEEEEEE
Confidence            6555555443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.30  E-value=8.7e-13  Score=91.54  Aligned_cols=46  Identities=24%  Similarity=0.413  Sum_probs=42.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|+++++++++|++ +|+|+||||||||+++|.|.        ..|+.|+|.++|
T Consensus        23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g   69 (229)
T 2pze_A           23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--------LEPSEGKIKHSG   69 (229)
T ss_dssp             SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEECS
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCccEEEECC
Confidence            67899999999986 99999999999999999999        888899999987

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.30  E-value=8.7e-13  Score=97.11  Aligned_cols=50  Identities=24%  Similarity=0.439  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~   80 (355)
T 1z47_A           30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--------ERPTKGDVWIGGKRVT   80 (355)
T ss_dssp             CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCccEEEECCEECC
Confidence            67899999999986 99999999999999999999        8889999999998653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.30  E-value=9e-13  Score=97.14  Aligned_cols=50  Identities=28%  Similarity=0.387  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+||||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~   68 (359)
T 2yyz_A           18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--------YKPTSGEIYFDDVLVN   68 (359)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC--------CCCCccEEEECCEECC
Confidence            57899999999986 99999999999999999999        8889999999998653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.29  E-value=7.8e-13  Score=93.02  Aligned_cols=49  Identities=20%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      .+|++++|++++|++ +|+|+||||||||+++|+|.        ..++ |+|.++|.++
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--------~~p~-G~i~~~g~~~   63 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--------TSGK-GSIQFAGQPL   63 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCE-EEEEETTEEG
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCC-eEEEECCEEC
Confidence            367899999999986 99999999999999999999        8888 9999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.29  E-value=7e-13  Score=97.49  Aligned_cols=50  Identities=22%  Similarity=0.312  Sum_probs=46.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~   70 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--------DVPSTGELYFDDRLVA   70 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECc
Confidence            67899999999986 99999999999999999999        8889999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.29  E-value=1.1e-12  Score=96.79  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~   68 (362)
T 2it1_A           18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--------YKPTSGKIYFDEKDVT   68 (362)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence            57899999999986 99999999999999999999        8889999999998653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.29  E-value=8.7e-13  Score=92.00  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=42.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|+++++++++|++ +|+|+||||||||+++|.|.        ..|+.|+|.++|
T Consensus        20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g   66 (237)
T 2cbz_A           20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--------MDKVEGHVAIKG   66 (237)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--------SEEEEEEEEECS
T ss_pred             eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECC
Confidence            67899999999986 99999999999999999999        788899999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.28  E-value=2.5e-11  Score=83.73  Aligned_cols=80  Identities=13%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCC----cccCceEEEEECCEEEEEEEcCCc-----------ccccccHHh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQP----TQHPTSEELSIGKIKFKAFDLGGH-----------QIARRVWKD   83 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~p----t~~~~~g~i~~~~~~i~~~d~~g~-----------~~~r~~~~~   83 (109)
                      .-+|+|+|.+|+|||||++.|.+..+ ....|    |..+....+.+++..+.+||++|.           +.++..+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~  108 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL  108 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence            35789999999999999999998765 33333    334555677889999999999993           345555566


Q ss_pred             hhhcCCEEEEEEeCCC
Q 033893           84 YYAKVIGSFKTKKIEF   99 (109)
Q Consensus        84 ~~~~~~~~v~~~~~~~   99 (109)
                      ++.++++++.+.+.+.
T Consensus       109 ~~~~~~~~l~v~d~~~  124 (239)
T 3lxx_A          109 TSPGPHALLLVVPLGR  124 (239)
T ss_dssp             TTTCCSEEEEEEETTC
T ss_pred             cCCCCcEEEEEeeCCC
Confidence            6778899999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.28  E-value=1.3e-12  Score=96.72  Aligned_cols=50  Identities=28%  Similarity=0.450  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|+++++++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~   76 (372)
T 1v43_A           26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--------EEPTEGRIYFGDRDVT   76 (372)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCceEEEECCEECC
Confidence            57899999999986 99999999999999999999        8889999999998653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.27  E-value=9.8e-13  Score=96.59  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=45.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|.        ..++.|+|.++|.++.
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~~~g~~i~   65 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--------HVPDSGRILLDGKDVT   65 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC--------CCCCCcEEEECCEECC
Confidence            67899999999986 99999999999999999999        8889999999998653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.26  E-value=1e-12  Score=94.99  Aligned_cols=50  Identities=20%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~G~~i~  119 (306)
T 3nh6_A           69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--------YDISSGCIRIDGQDIS  119 (306)
T ss_dssp             EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS--------SCCSEEEEEETTEETT
T ss_pred             eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC--------CCCCCcEEEECCEEcc
Confidence            67899999999985 99999999999999999999        8889999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.25  E-value=4.8e-11  Score=84.01  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCEEEEEEEcCCcccccc------cHHhhh--hcCC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--AKVI   89 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~------~~~~~~--~~~~   89 (109)
                      -+|+++|++|||||||++++.|..+ ....|+..  ...+.+.+++..+.+||++|...+..      +++.|+  .+++
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   83 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD   83 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence            4689999999999999999998865 23444333  44577888899999999999887766      778888  5799


Q ss_pred             EEEEEEeCCCc
Q 033893           90 GSFKTKKIEFR  100 (109)
Q Consensus        90 ~~v~~~~~~~~  100 (109)
                      +++.+.|.+..
T Consensus        84 ~vi~v~D~~~~   94 (271)
T 3k53_A           84 VIVDIVDSTCL   94 (271)
T ss_dssp             EEEEEEEGGGH
T ss_pred             EEEEEecCCcc
Confidence            99999987553

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.24  E-value=1.8e-12  Score=91.85  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=43.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|+|...      ..++.|+|.++|.++
T Consensus        35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~------~~p~~G~I~~~g~~i   86 (267)
T 2zu0_C           35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED------YEVTGGTVEFKGKDL   86 (267)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT------CEEEEEEEEETTEEG
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC------CCCCCeEEEECCEEC
Confidence            57889999999986 9999999999999999999710      136789999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.24  E-value=4.8e-11  Score=83.91  Aligned_cols=79  Identities=20%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCEEEEEEEcCCcccccc----------cHHhhh--h
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARR----------VWKDYY--A   86 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~----------~~~~~~--~   86 (109)
                      +|+++|.+|||||||++.+.|.+. ....|...  ...+.+.+++..+.+||++|......          +++.|+  .
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~   82 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDL   82 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhC
Confidence            689999999999999999998864 33444433  55678888999999999999877653          677788  7


Q ss_pred             cCCEEEEEEeCCCc
Q 033893           87 KVIGSFKTKKIEFR  100 (109)
Q Consensus        87 ~~~~~v~~~~~~~~  100 (109)
                      ++++++.+.|.+..
T Consensus        83 ~~d~vi~VvDas~~   96 (256)
T 3iby_A           83 EYDCIINVIDACHL   96 (256)
T ss_dssp             CCSEEEEEEEGGGH
T ss_pred             CCCEEEEEeeCCCc
Confidence            89999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.24  E-value=4.3e-11  Score=86.02  Aligned_cols=85  Identities=16%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHhcCcccccC----CcccCceEEEEEC-CEEEEEEEcCCccccc----------ccH
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQHPTSEELSIG-KIKFKAFDLGGHQIAR----------RVW   81 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~----pt~~~~~g~i~~~-~~~i~~~d~~g~~~~r----------~~~   81 (109)
                      +.+.|.|+++|.+|||||||+++|.+.++....    .|.....+....+ +..+.+||++|..+.+          ..+
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            456788999999999999999999998764222    2333445666777 8999999999985544          577


Q ss_pred             HhhhhcCCEEEEEEeCCCcc
Q 033893           82 KDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        82 ~~~~~~~~~~v~~~~~~~~~  101 (109)
                      ..++.++|+++.+.+.+...
T Consensus        87 ~~~l~~aD~il~VvD~~~~~  106 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGW  106 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBS
T ss_pred             HHHhhcCCEEEEEEeCCCCC
Confidence            78999999999999986543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.24  E-value=3.9e-11  Score=84.15  Aligned_cols=82  Identities=18%  Similarity=0.251  Sum_probs=62.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccc---cCC-cccCceEEEEECCEEEEEEEcCCcccccccHHhhhh--------
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQP-TQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA--------   86 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~---~~p-t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~--------   86 (109)
                      ++.+|+++|..|+|||||++++.+.+...   ..+ |.......+..++..+.+||++|+..++...+.+++        
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~  114 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN  114 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence            45678999999999999999999876422   222 333445677788999999999999887666555554        


Q ss_pred             -cCCEEEEEEeCCCc
Q 033893           87 -KVIGSFKTKKIEFR  100 (109)
Q Consensus        87 -~~~~~v~~~~~~~~  100 (109)
                       ++++++.+.+++..
T Consensus       115 ~~~~~il~V~~~d~~  129 (262)
T 3def_A          115 RTIDVLLYVDRLDVY  129 (262)
T ss_dssp             CEECEEEEEEESSCS
T ss_pred             CCCCEEEEEEcCCCC
Confidence             78899999877543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.24  E-value=2.4e-12  Score=90.91  Aligned_cols=48  Identities=19%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|+++++++++|++ +|+|+||||||||+++|.|.        ..+ .|+|.++|.++
T Consensus        35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~-~G~I~i~g~~i   83 (260)
T 2ghi_A           35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF--------YDA-EGDIKIGGKNV   83 (260)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCC-EEEEEETTEEG
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc--------CCC-CeEEEECCEEh
Confidence            67899999999986 99999999999999999998        655 79999998765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.24  E-value=7.7e-11  Score=84.68  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=63.3

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccc--------ccccHHhhh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYY   85 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~--------~r~~~~~~~   85 (109)
                      .+.+.|+|+|.+|+|||||++++.+.++.  +..|  |.....+.+..++..+.+||++|..+        +......++
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            45678999999999999999999988763  2222  22333455566789999999999776        344566788


Q ss_pred             hcCCEEEEEEeCCCc
Q 033893           86 AKVIGSFKTKKIEFR  100 (109)
Q Consensus        86 ~~~~~~v~~~~~~~~  100 (109)
                      +.+|+++.+++.+..
T Consensus        85 ~~ad~il~VvD~~~~   99 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHP   99 (301)
T ss_dssp             SSCSEEEEEEETTSC
T ss_pred             hcCCEEEEEEECCCC
Confidence            999999999998653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.23  E-value=2.6e-12  Score=90.18  Aligned_cols=51  Identities=22%  Similarity=0.315  Sum_probs=43.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|...      ..++.|+|.++|.++
T Consensus        18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~------~~p~~G~I~~~g~~~   69 (250)
T 2d2e_A           18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE------YTVERGEILLDGENI   69 (250)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT------CEEEEEEEEETTEEC
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC------CCCCceEEEECCEEC
Confidence            57889999999986 9999999999999999999610      246789999999765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.22  E-value=2.8e-12  Score=90.82  Aligned_cols=47  Identities=28%  Similarity=0.406  Sum_probs=43.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++++++ +++ +|+|+||||||||+++|+|.        . |+.|+|.++|.++
T Consensus        20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl--------~-p~~G~I~~~g~~~   67 (263)
T 2pjz_A           20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL--------L-PYSGNIFINGMEV   67 (263)
T ss_dssp             EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS--------S-CCEEEEEETTEEG
T ss_pred             eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC--------C-CCCcEEEECCEEC
Confidence            5788999999 875 99999999999999999999        8 8899999999765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.22  E-value=3.2e-12  Score=91.72  Aligned_cols=46  Identities=24%  Similarity=0.413  Sum_probs=42.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|
T Consensus        53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g   99 (290)
T 2bbs_A           53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--------LEPSEGKIKHSG   99 (290)
T ss_dssp             SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS--------SCEEEEEEECCS
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECC
Confidence            57889999999986 99999999999999999999        788899999987

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.22  E-value=4.7e-11  Score=79.05  Aligned_cols=82  Identities=15%  Similarity=0.215  Sum_probs=56.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECCEEEEEEEcCC----------cccccccHHhhh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGKIKFKAFDLGG----------HQIARRVWKDYY   85 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~~~i~~~d~~g----------~~~~r~~~~~~~   85 (109)
                      +..+|+++|.+|+|||||++.+.+.++ ....|+.+.  .......++ .+.+||++|          ++.++.++..|+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND-ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT-TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC-cEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence            346789999999999999999998764 344444332  222333443 678999999          777888899999


Q ss_pred             hcC---CEEEEEEeCCCcc
Q 033893           86 AKV---IGSFKTKKIEFRD  101 (109)
Q Consensus        86 ~~~---~~~v~~~~~~~~~  101 (109)
                      +.+   ++++.+++.+...
T Consensus       101 ~~~~~~~~~i~v~d~~~~~  119 (195)
T 1svi_A          101 TTREELKAVVQIVDLRHAP  119 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCC
T ss_pred             hhhhcCCEEEEEEECCCCC
Confidence            888   8999999976543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.20  E-value=1.1e-10  Score=79.72  Aligned_cols=86  Identities=13%  Similarity=0.070  Sum_probs=61.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCC--cccCceEEEEECCEEEEEEEcCCc------ccc---cccHHhhhh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQHPTSEELSIGKIKFKAFDLGGH------QIA---RRVWKDYYA   86 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~p--t~~~~~g~i~~~~~~i~~~d~~g~------~~~---r~~~~~~~~   86 (109)
                      +..+|+++|.+|+|||||++.+.+.++. ...|  |.....+.+..++..+.+||++|+      ++.   ...+..++.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  107 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH  107 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence            4567999999999999999999988763 2222  233444566667889999999998      331   122345677


Q ss_pred             cCCEEEEEEeCCCccccc
Q 033893           87 KVIGSFKTKKIEFRDFYE  104 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~  104 (109)
                      .+++++.++|.+...+++
T Consensus       108 ~~d~~i~v~d~~~~~s~~  125 (228)
T 2qu8_A          108 INGVILFIIDISEQCGLT  125 (228)
T ss_dssp             SSEEEEEEEETTCTTSSC
T ss_pred             cccEEEEEEecccccCcc
Confidence            889999999987665543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.19  E-value=8e-11  Score=83.56  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=59.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc-ccccCCccc--CceEEEEECCEEEEEEEcCCccccc------ccHHhhhh--cCC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--KVI   89 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~-~~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r------~~~~~~~~--~~~   89 (109)
                      .+|+++|.+|||||||++++.+.+ +....|...  ...+.+.. +..+.+||++|+..++      .+++.|+.  +++
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d   82 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD   82 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence            468999999999999999999875 334445333  33344433 6778899999988775      57788887  599


Q ss_pred             EEEEEEeCCCc
Q 033893           90 GSFKTKKIEFR  100 (109)
Q Consensus        90 ~~v~~~~~~~~  100 (109)
                      +++.++|.+..
T Consensus        83 ~vi~V~D~t~~   93 (272)
T 3b1v_A           83 SILNVVDATNL   93 (272)
T ss_dssp             EEEEEEEGGGH
T ss_pred             EEEEEecCCch
Confidence            99999987654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.18  E-value=4.1e-11  Score=87.75  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=43.9

Q ss_pred             CcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           50 PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        50 pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ||.++...++.+++..+.+||++|++++|.+|.+||+++++++.+++++
T Consensus       147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS  195 (340)
T 4fid_A          147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA  195 (340)
T ss_dssp             CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred             ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence            4456666677888899999999999999999999999999999999997

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.18  E-value=6.3e-11  Score=78.07  Aligned_cols=80  Identities=23%  Similarity=0.333  Sum_probs=58.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCce--EEEEECCEEEEEEEcCC----------cccccccHHhhhhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS--EELSIGKIKFKAFDLGG----------HQIARRVWKDYYAK   87 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~--g~i~~~~~~i~~~d~~g----------~~~~r~~~~~~~~~   87 (109)
                      ..+|+++|.+|||||||++.+.+.+.....|+.+...  ..... +..+.+||++|          ++.++.+++.|++.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~  101 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN  101 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence            3579999999999999999999887655555444322  22222 34567899999          77788888999988


Q ss_pred             C---CEEEEEEeCCCc
Q 033893           88 V---IGSFKTKKIEFR  100 (109)
Q Consensus        88 ~---~~~v~~~~~~~~  100 (109)
                      +   ++++.+.+.+..
T Consensus       102 ~~~~~~vi~v~d~~~~  117 (195)
T 3pqc_A          102 RWSLQMVFLLVDGRIP  117 (195)
T ss_dssp             CTTEEEEEEEEETTSC
T ss_pred             CcCceEEEEEecCCCC
Confidence            7   778888876543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.17  E-value=1.8e-10  Score=80.94  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcc--cCceEEEEECCEEEEEEEcCCcccccc------cHHhhhh--c
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYYA--K   87 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~------~~~~~~~--~   87 (109)
                      +..+|+++|.+|||||||++.+.+.++ ....|..  ....+.+..++..+.+||++|...++.      +.+.|+.  +
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   83 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD   83 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence            345789999999999999999998765 3334433  344567777889999999999887765      3366774  7


Q ss_pred             CCEEEEEEeCCCcc
Q 033893           88 VIGSFKTKKIEFRD  101 (109)
Q Consensus        88 ~~~~v~~~~~~~~~  101 (109)
                      +++++.+.|.+...
T Consensus        84 ~d~ii~V~D~t~~~   97 (258)
T 3a1s_A           84 ADLVILVADSVNPE   97 (258)
T ss_dssp             CSEEEEEEETTSCH
T ss_pred             CCEEEEEeCCCchh
Confidence            99999999986543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.16  E-value=6.1e-12  Score=93.58  Aligned_cols=49  Identities=24%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+||||||||||+++|+|.        .. +.|+|.++|.++.
T Consensus        36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~-~~G~I~i~G~~i~   85 (390)
T 3gd7_A           36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--------LN-TEGEIQIDGVSWD   85 (390)
T ss_dssp             SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC--------SE-EEEEEEESSCBTT
T ss_pred             EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC--------CC-CCeEEEECCEECC
Confidence            68899999999986 99999999999999999998        66 7899999987553

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.15  E-value=9e-12  Score=87.68  Aligned_cols=45  Identities=24%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|+|.        ..++.|+|.+.
T Consensus        20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~   65 (253)
T 2nq2_C           20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--------HRPIQGKIEVY   65 (253)
T ss_dssp             EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS--------SCCSEEEEEEC
T ss_pred             EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEEe
Confidence            67899999999986 99999999999999999998        78889999753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.15  E-value=2.2e-10  Score=85.80  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cccCCcc--cCceEEEEECCEEEEEEEcCCccc---------ccccHHhhhhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAKV   88 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~---------~r~~~~~~~~~~   88 (109)
                      +|+|+|.+|+|||||++.|.+.+.  .+..|..  ....+.+.+++..+.+||++|.+.         ++..+..+++++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a   82 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   82 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence            589999999999999999998764  2334433  345688889999999999999653         355678899999


Q ss_pred             CEEEEEEeCCC
Q 033893           89 IGSFKTKKIEF   99 (109)
Q Consensus        89 ~~~v~~~~~~~   99 (109)
                      |+++.++|.+.
T Consensus        83 d~il~V~D~~~   93 (439)
T 1mky_A           83 DLVLFVVDGKR   93 (439)
T ss_dssp             SEEEEEEETTT
T ss_pred             CEEEEEEECCC
Confidence            99999999754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.14  E-value=5e-10  Score=77.93  Aligned_cols=81  Identities=11%  Similarity=0.062  Sum_probs=60.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCc-cc-ccCC---cccCceEEEEECCEEEEEEEcCCcccccc-----------cHH
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDER-LV-QHQP---TQHPTSEELSIGKIKFKAFDLGGHQIARR-----------VWK   82 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~-~~-~~~p---t~~~~~g~i~~~~~~i~~~d~~g~~~~r~-----------~~~   82 (109)
                      +..+|+|+|.+|||||||++.|.+.. +. ...|   |.....+.+..++..+.+||++|......           ...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~  100 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL  100 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence            34678999999999999999999876 32 2333   33345567788899999999999765321           223


Q ss_pred             hhhhcCCEEEEEEeCCC
Q 033893           83 DYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        83 ~~~~~~~~~v~~~~~~~   99 (109)
                      .+++.+++++.+++.+.
T Consensus       101 ~~~~~~d~il~V~d~~~  117 (260)
T 2xtp_A          101 LSAPGPHVLLLVTQLGR  117 (260)
T ss_dssp             HHTTCCSEEEEEEETTC
T ss_pred             hcCCCCcEEEEEEeCCC
Confidence            46788999999999864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.14  E-value=8.3e-12  Score=82.36  Aligned_cols=35  Identities=29%  Similarity=0.149  Sum_probs=32.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++++++.++++++ +|+|+||||||||+++|.|.
T Consensus        21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            368889999999986 99999999999999999987

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.14  E-value=1.3e-10  Score=85.54  Aligned_cols=78  Identities=21%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcc-c--ccCCcccCceEEEEECCEEEEEEEcCCc---------ccccccHHhhhhcCCE
Q 033893           23 ILFLGLDNAGKTTLLHMLKDERL-V--QHQPTQHPTSEELSIGKIKFKAFDLGGH---------QIARRVWKDYYAKVIG   90 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~~~-~--~~~pt~~~~~g~i~~~~~~i~~~d~~g~---------~~~r~~~~~~~~~~~~   90 (109)
                      |+|+|++|||||||+++|.+... .  ...+|..+..+.+.+++..+.++|..|.         +.++..++ ++..+|.
T Consensus       182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~  260 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDA  260 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSE
T ss_pred             EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCE
Confidence            79999999999999999998764 2  2334566778999999999999999885         22333433 5678999


Q ss_pred             EEEEEeCCCcc
Q 033893           91 SFKTKKIEFRD  101 (109)
Q Consensus        91 ~v~~~~~~~~~  101 (109)
                      ++.+.|.+...
T Consensus       261 il~VvD~s~~~  271 (364)
T 2qtf_A          261 LILVIDSTFSE  271 (364)
T ss_dssp             EEEEEETTSCH
T ss_pred             EEEEEECCCCc
Confidence            99999986543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.13  E-value=2.3e-11  Score=94.03  Aligned_cols=51  Identities=14%  Similarity=0.239  Sum_probs=46.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|+++++++++|++ +|+|+||||||||++.+.|.        ..|+.|+|.++|.++.
T Consensus       357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g~~~~  408 (582)
T 3b5x_A          357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF--------YDVDSGSICLDGHDVR  408 (582)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCCEEEECCEEhh
Confidence            378999999999985 99999999999999999999        8888999999998765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.13  E-value=2.6e-10  Score=80.64  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcc--cCceEEEEECCEEEEEEEcCCccccc----------ccHHhhh-
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIAR----------RVWKDYY-   85 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r----------~~~~~~~-   85 (109)
                      +.+|+++|.+|||||||++++.+.++ ....|..  ....+.+..++..+.+||++|...+.          .+++.|+ 
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~   82 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL   82 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence            45789999999999999999998865 2344433  34457777788899999999987765          3455565 


Q ss_pred             -hcCCEEEEEEeCCCc
Q 033893           86 -AKVIGSFKTKKIEFR  100 (109)
Q Consensus        86 -~~~~~~v~~~~~~~~  100 (109)
                       .++++++.+.|.+..
T Consensus        83 ~~~~d~ii~VvD~~~~   98 (274)
T 3i8s_A           83 SGDADLLINVVDASNL   98 (274)
T ss_dssp             HTCCSEEEEEEEGGGH
T ss_pred             hcCCCEEEEEecCCCh
Confidence             589999999987653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.12  E-value=3.1e-10  Score=83.73  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccC--CcccCceEEEEECC-----------------EEEEEEEcCCccccc--
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQ--PTQHPTSEELSIGK-----------------IKFKAFDLGGHQIAR--   78 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~--pt~~~~~g~i~~~~-----------------~~i~~~d~~g~~~~r--   78 (109)
                      .+|+|+|.+|+|||||+++|.+.+. ....  +|..++.|.+.+.+                 ..+.+||++|..+..  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            3689999999999999999998763 2222  36677788888776                 478999999987642  


Q ss_pred             -----ccHHhhhhcCCEEEEEEeCCC
Q 033893           79 -----RVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        79 -----~~~~~~~~~~~~~v~~~~~~~   99 (109)
                           ..+..+++++++++.+.+.+.
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence                 223456889999999998765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.12  E-value=2.1e-11  Score=94.32  Aligned_cols=50  Identities=14%  Similarity=0.232  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||++.+.|.        ..|+.|+|.++|.++.
T Consensus       358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~--------~~p~~G~i~~~g~~~~  408 (582)
T 3b60_A          358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--------YDIDEGHILMDGHDLR  408 (582)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--------TCCSEEEEEETTEETT
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--------cCCCCCeEEECCEEcc
Confidence            67899999999985 99999999999999999999        8888999999998654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.11  E-value=4.8e-11  Score=91.29  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEE--------EEC----CEEEEEEEcCCcccccccHHhh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEEL--------SIG----KIKFKAFDLGGHQIARRVWKDY   84 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i--------~~~----~~~i~~~d~~g~~~~r~~~~~~   84 (109)
                      .++.+|+++|.+|||||||++.+.+.++ ....||.+.+..+.        .++    +..+.+||++|++.++..+..|
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            3456799999999999999999998876 45667776554432        222    4789999999999999999999


Q ss_pred             hhcCCEEEEEEeCCCc
Q 033893           85 YAKVIGSFKTKKIEFR  100 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~~  100 (109)
                      ++++++++.++|.+..
T Consensus       119 l~~~d~ii~V~D~s~~  134 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTD  134 (535)
T ss_dssp             HHSSEEEEEEECGGGG
T ss_pred             ccCCcEEEEEEeCCCc
Confidence            9999999999987644

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.11  E-value=2.4e-10  Score=85.22  Aligned_cols=83  Identities=19%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cc--cCCcccCceEEEEECC-----------------EEEEEEEcCCccccc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQ--HQPTQHPTSEELSIGK-----------------IKFKAFDLGGHQIAR   78 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~--~~pt~~~~~g~i~~~~-----------------~~i~~~d~~g~~~~r   78 (109)
                      ...+++|+|++|+|||||+++|.+.++ ..  ..+|..++.|.+.+.+                 ..+.+||++|..+.+
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            345689999999999999999998765 22  2235668888888764                 248899999977644


Q ss_pred             c-------cHHhhhhcCCEEEEEEeCCCcc
Q 033893           79 R-------VWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        79 ~-------~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      .       .+..+++++++++.+.+.+...
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       5678999999999999875443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.11  E-value=1.3e-10  Score=77.95  Aligned_cols=84  Identities=20%  Similarity=0.265  Sum_probs=50.1

Q ss_pred             CcccccE-EEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECCEEEEEEEcCCccc----------ccccH
Q 033893           16 LWQKEAK-ILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGKIKFKAFDLGGHQI----------ARRVW   81 (109)
Q Consensus        16 ~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~~~i~~~d~~g~~~----------~r~~~   81 (109)
                      ++..++. ++|+|++|||||||++++.+..+ ....|+.+.  ..+.+.+++ .+.++|++|...          ++...
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            5666665 69999999999999999998863 333444332  223444443 456789988632          23333


Q ss_pred             Hhhhh---cCCEEEEEEeCCCc
Q 033893           82 KDYYA---KVIGSFKTKKIEFR  100 (109)
Q Consensus        82 ~~~~~---~~~~~v~~~~~~~~  100 (109)
                      ..|++   .+++++++.+++..
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~  121 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHP  121 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhhhcccEEEEEEECCCC
Confidence            34553   57788888887654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.09  E-value=5.6e-10  Score=81.33  Aligned_cols=48  Identities=19%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             cccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           51 TQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        51 t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      |.++...++.+++..+.+||++|++++|.+|.+||+++++++.+++++
T Consensus       154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls  201 (327)
T 3ohm_A          154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS  201 (327)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred             eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence            344445567788999999999999999999999999999999999876

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.09  E-value=1.8e-11  Score=94.63  Aligned_cols=50  Identities=26%  Similarity=0.425  Sum_probs=45.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+||||||||||++.+.|.        ..|+.|+|.++|.++.
T Consensus       356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g~~~~  406 (578)
T 4a82_A          356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDGHNIK  406 (578)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--------SCCSEEEEEETTEEGG
T ss_pred             ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCcEEEECCEEhh
Confidence            67899999999986 99999999999999999999        8889999999998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.09  E-value=2.5e-11  Score=94.22  Aligned_cols=50  Identities=18%  Similarity=0.332  Sum_probs=46.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||++.+.|.        ..|+.|+|.++|.++.
T Consensus       370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g~~i~  420 (598)
T 3qf4_B          370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF--------YDVDRGQILVDGIDIR  420 (598)
T ss_dssp             SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS--------SCCSEEEEEETTEEGG
T ss_pred             cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------cCCCCeEEEECCEEhh
Confidence            67899999999986 99999999999999999999        8889999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.08  E-value=5.1e-10  Score=83.82  Aligned_cols=79  Identities=25%  Similarity=0.287  Sum_probs=56.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccccccH------------Hhh
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRVW------------KDY   84 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~------------~~~   84 (109)
                      .+++|+|++|||||||+++|.+...  ....|  |..+..+.+.++|..+.+||++|..+.....            ..+
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~  260 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS  260 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence            4789999999999999999998854  23333  3335678999999999999999975432221            346


Q ss_pred             hhcCCEEEEEEeCCC
Q 033893           85 YAKVIGSFKTKKIEF   99 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~   99 (109)
                      +..++.++.+.+.+.
T Consensus       261 i~~ad~vllv~d~~~  275 (439)
T 1mky_A          261 IEKADVVVIVLDATQ  275 (439)
T ss_dssp             HHHCSEEEEEEETTT
T ss_pred             HhhCCEEEEEEeCCC
Confidence            778999999888754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.07  E-value=1.1e-11  Score=86.80  Aligned_cols=88  Identities=14%  Similarity=0.112  Sum_probs=60.1

Q ss_pred             cccEEEEEeCC---------CCcHHHHHHHHhc---Ccc-cccCCcc-c--CceE--------------EEEEC--CEEE
Q 033893           19 KEAKILFLGLD---------NAGKTTLLHMLKD---ERL-VQHQPTQ-H--PTSE--------------ELSIG--KIKF   66 (109)
Q Consensus        19 ~~~~i~lvG~~---------GsGKSTll~~l~g---~~~-~~~~pt~-~--~~~g--------------~i~~~--~~~i   66 (109)
                      +..+|+++|.+         |+|||||++.+.+   ..+ ....|+. +  +...              .+.++  .+.+
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l   97 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM   97 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence            34579999999         9999999999998   434 3455543 2  1111              11123  3678


Q ss_pred             EEEE-----------------------cCCcccccccHHhhhh---------------------cCCEEEEEEeCCCc--
Q 033893           67 KAFD-----------------------LGGHQIARRVWKDYYA---------------------KVIGSFKTKKIEFR--  100 (109)
Q Consensus        67 ~~~d-----------------------~~g~~~~r~~~~~~~~---------------------~~~~~v~~~~~~~~--  100 (109)
                      .+||                       .+|+++++.+++.||+                     +++++++++|++..  
T Consensus        98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~  177 (255)
T 3c5h_A           98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN  177 (255)
T ss_dssp             EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred             EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence            8999                       6778888888888888                     89999999999876  


Q ss_pred             cccccc
Q 033893          101 DFYEVE  106 (109)
Q Consensus       101 ~~~~~~  106 (109)
                      .+++..
T Consensus       178 ~s~~~~  183 (255)
T 3c5h_A          178 RNFDDQ  183 (255)
T ss_dssp             -CHHHH
T ss_pred             hhHHHH
Confidence            555543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.07  E-value=4.7e-10  Score=80.45  Aligned_cols=83  Identities=18%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCcc-c--------ccccHHh
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQ-I--------ARRVWKD   83 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~-~--------~r~~~~~   83 (109)
                      ..+.+.|+|+|++|||||||+++|.+.++.  +..|  |.....|.+..++..+.++|++|.. +        .......
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            345667899999999999999999998753  2222  2223346667778899999999986 2        2333456


Q ss_pred             hhhcCCEEEEEEeCCC
Q 033893           84 YYAKVIGSFKTKKIEF   99 (109)
Q Consensus        84 ~~~~~~~~v~~~~~~~   99 (109)
                      +++.+|+++.+.+.+.
T Consensus        85 ~l~~~D~vl~Vvd~~~  100 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR  100 (301)
T ss_dssp             CCCCEEEEEEEEETTC
T ss_pred             HHhcCCEEEEEEeCCC
Confidence            6778899888887643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.06  E-value=3.8e-10  Score=76.24  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=55.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCc-ccc--cCCcccCceEEEEE---CCEEEEEEEcCC----------cccccccHHh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDER-LVQ--HQPTQHPTSEELSI---GKIKFKAFDLGG----------HQIARRVWKD   83 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~-~~~--~~pt~~~~~g~i~~---~~~~i~~~d~~g----------~~~~r~~~~~   83 (109)
                      ..+|+++|.+|||||||++.|.+.+ ...  ..|..........+   ++..+.+||++|          ++.++.++..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  108 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS  108 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence            4578999999999999999999876 222  22211222222222   357888999999          4555677788


Q ss_pred             hhhc---CCEEEEEEeCCC
Q 033893           84 YYAK---VIGSFKTKKIEF   99 (109)
Q Consensus        84 ~~~~---~~~~v~~~~~~~   99 (109)
                      |++.   +++++.+.+.+.
T Consensus       109 ~~~~~~~~d~vi~v~d~~~  127 (223)
T 4dhe_A          109 YLQTRPQLCGMILMMDARR  127 (223)
T ss_dssp             HHHHCTTEEEEEEEEETTS
T ss_pred             HHhcCcCcCEEEEEEeCCC
Confidence            8887   666888888754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.04  E-value=9.6e-11  Score=87.71  Aligned_cols=80  Identities=16%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCccc----CceEEEEECCEEEEEEEcCCcc--------cccccHHhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH----PTSEELSIGKIKFKAFDLGGHQ--------IARRVWKDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~----~~~g~i~~~~~~i~~~d~~g~~--------~~r~~~~~~~~~~   88 (109)
                      .+|+|+|.+|+|||||++.|.+.++....++.+    ...+.+.+++..+.+||++|++        +++..+..+++++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            468999999999999999999876543222222    3345556677889999999985        5677888999999


Q ss_pred             CEEEEEEeCCCc
Q 033893           89 IGSFKTKKIEFR  100 (109)
Q Consensus        89 ~~~v~~~~~~~~  100 (109)
                      |+++.+.|.+..
T Consensus        84 d~il~vvD~~~~   95 (436)
T 2hjg_A           84 DVIIFMVNGREG   95 (436)
T ss_dssp             SEEEEEEETTTC
T ss_pred             CEEEEEEeCCCC
Confidence            999999987543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.03  E-value=3.3e-11  Score=93.42  Aligned_cols=50  Identities=18%  Similarity=0.427  Sum_probs=45.4

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||++.+.|.        ..++.|+|.++|.++.
T Consensus       358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~--------~~~~~G~i~i~g~~i~  408 (587)
T 3qf4_A          358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL--------IDPERGRVEVDELDVR  408 (587)
T ss_dssp             SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS--------SCCSEEEEEESSSBGG
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------ccCCCcEEEECCEEcc
Confidence            67899999999985 99999999999999999999        8889999999987654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.02  E-value=2e-09  Score=80.09  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=59.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECC-----------------EEEEEEEcCCccc---
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGK-----------------IKFKAFDLGGHQI---   76 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~-----------------~~i~~~d~~g~~~---   76 (109)
                      .+++|+|+||||||||+++|++.+.  ....|  |..|+.|.+.+.+                 ..+.++|++|...   
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s  100 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS  100 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence            3579999999999999999998654  23334  5678899999876                 4678889888432   


Q ss_pred             ----ccccHHhhhhcCCEEEEEEeCC
Q 033893           77 ----ARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        77 ----~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                          .+..+..+++++++++.+.+..
T Consensus       101 ~~e~L~~~fl~~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A          101 TGVGLGNAFLSHVRAVDAIYQVVRAF  126 (392)
T ss_dssp             SSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                3334566778999998888764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.02  E-value=5.2e-10  Score=85.01  Aligned_cols=83  Identities=24%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccccccH--------HhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~--------~~~~~~~   88 (109)
                      .+|+|+|.+|+|||||++.|.+.+.  .+..|  |..+....+.+++..+.+||++|..+.+..+        ..++.++
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a  313 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA  313 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence            4689999999999999999998753  33333  2234457788899999999999987765443        3478899


Q ss_pred             CEEEEEEeCCCcccc
Q 033893           89 IGSFKTKKIEFRDFY  103 (109)
Q Consensus        89 ~~~v~~~~~~~~~~~  103 (109)
                      |+++.++|.+...++
T Consensus       314 D~vl~VvD~s~~~s~  328 (476)
T 3gee_A          314 DLILYLLDLGTERLD  328 (476)
T ss_dssp             SEEEEEEETTTCSSG
T ss_pred             CEEEEEEECCCCcch
Confidence            999999998776554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.01  E-value=1.4e-10  Score=87.31  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=60.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCccc----CceEEEEECCEEEEEEEcCC--------cccccccHHhhhhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH----PTSEELSIGKIKFKAFDLGG--------HQIARRVWKDYYAK   87 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~----~~~g~i~~~~~~i~~~d~~g--------~~~~r~~~~~~~~~   87 (109)
                      ..+|+|+|.+|+|||||+++|.+.++....++.+    ...+.+..++..+.+||++|        +++++..+..++++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  102 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE  102 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence            3478999999999999999999876543222222    22344445678899999999        77888889999999


Q ss_pred             CCEEEEEEeCCC
Q 033893           88 VIGSFKTKKIEF   99 (109)
Q Consensus        88 ~~~~v~~~~~~~   99 (109)
                      +|+++.+.|...
T Consensus       103 ad~il~VvD~~~  114 (456)
T 4dcu_A          103 ADVIIFMVNGRE  114 (456)
T ss_dssp             CSEEEEEEESSS
T ss_pred             CCEEEEEEeCCC
Confidence            999999988643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.00  E-value=5e-10  Score=85.23  Aligned_cols=81  Identities=26%  Similarity=0.247  Sum_probs=64.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcc-ccc--------ccHHhhhhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQ-IAR--------RVWKDYYAK   87 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~-~~r--------~~~~~~~~~   87 (109)
                      .+|+|+|.+|+|||||++.+.+.++  .+..|  |..+..+.+.+++..+.+||++|.. +..        .....++.+
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~  323 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK  323 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence            5789999999999999999998753  34444  3446678899999999999999987 543        234578899


Q ss_pred             CCEEEEEEeCCCcc
Q 033893           88 VIGSFKTKKIEFRD  101 (109)
Q Consensus        88 ~~~~v~~~~~~~~~  101 (109)
                      +|+++.++|.+...
T Consensus       324 aD~vl~VvD~s~~~  337 (482)
T 1xzp_A          324 ADIVLFVLDASSPL  337 (482)
T ss_dssp             CSEEEEEEETTSCC
T ss_pred             ccEEEEEecCCCCC
Confidence            99999999986553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.99  E-value=8.1e-11  Score=80.72  Aligned_cols=34  Identities=21%  Similarity=0.074  Sum_probs=22.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      -|++++|+++++++ +|+||||||||||+++|.|.
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            47899999999985 99999999999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.98  E-value=2.5e-09  Score=75.16  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=56.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccC---Cc-ccCceEEEEECCEEEEEEEcCCcccccccHH-------hh--h
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PT-QHPTSEELSIGKIKFKAFDLGGHQIARRVWK-------DY--Y   85 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~---pt-~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~-------~~--~   85 (109)
                      +..+|+++|.+|+|||||++.|.+.++....   ++ .......+..++..+.+||++|......+..       .|  .
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~  117 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD  117 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence            3557899999999999999999987653222   21 1222345566788999999999876543222       22  2


Q ss_pred             hcCCEEEEEEeCCC
Q 033893           86 AKVIGSFKTKKIEF   99 (109)
Q Consensus        86 ~~~~~~v~~~~~~~   99 (109)
                      ..+++++.+++++.
T Consensus       118 ~~~d~il~v~~~d~  131 (270)
T 1h65_A          118 KTIDVLLYVDRLDA  131 (270)
T ss_dssp             CEECEEEEEEESSC
T ss_pred             CCCCEEEEEEeCCC
Confidence            36899999987754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.97  E-value=1.4e-09  Score=81.37  Aligned_cols=81  Identities=15%  Similarity=0.137  Sum_probs=59.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCc----------ccccccHH-hhh
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGH----------QIARRVWK-DYY   85 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~----------~~~r~~~~-~~~   85 (109)
                      .+|+++|.+|+|||||++++.+.++  ....|  |.......+.+++..+.+||++|+          ++++.+.. .++
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~  255 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI  255 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence            4789999999999999999998764  23333  223334677889999999999997          44444443 478


Q ss_pred             hcCCEEEEEEeCCCcc
Q 033893           86 AKVIGSFKTKKIEFRD  101 (109)
Q Consensus        86 ~~~~~~v~~~~~~~~~  101 (109)
                      ++++++++++|.+...
T Consensus       256 ~~ad~~llv~D~~~~~  271 (436)
T 2hjg_A          256 DRSEVVAVVLDGEEGI  271 (436)
T ss_dssp             HHCSEEEEEEETTTCC
T ss_pred             HhCCEEEEEEcCCcCC
Confidence            8999999999986643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.94  E-value=3.8e-09  Score=77.10  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      +|+++|.+|||||||+++|.|..+
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~   59 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDF   59 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCc
Confidence            789999999999999999999765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.93  E-value=8.6e-10  Score=80.66  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECC-EEEEEEEcCCcc----cccccHHhhhh---cCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGK-IKFKAFDLGGHQ----IARRVWKDYYA---KVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~-~~i~~~d~~g~~----~~r~~~~~~~~---~~~~   90 (109)
                      +|+|+|.+|||||||++++.+.+.  .. ..+|..+..+.+.+++ ..+.+||++|..    ..+.+...|++   ++++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~  239 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV  239 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence            578999999999999999997653  22 2346667788888886 889999998853    34445566655   5999


Q ss_pred             EEEEEeCCC
Q 033893           91 SFKTKKIEF   99 (109)
Q Consensus        91 ~v~~~~~~~   99 (109)
                      ++.+.|.+.
T Consensus       240 ll~VvD~s~  248 (342)
T 1lnz_A          240 IVHVIDMSG  248 (342)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEECCc
Confidence            999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.93  E-value=9.5e-09  Score=73.07  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             HHHHHHHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893            5 DWFYGILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus         5 ~~~~~~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      ..+.+++..+... .+..+|+++|..|||||||+++|.|..+
T Consensus         8 ~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B            8 NKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             HHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            4455556555543 4456899999999999999999998865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.92  E-value=2.7e-09  Score=79.95  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             hcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECC-EEEEEEEcCCccc----ccccHHh
Q 033893           13 SLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGK-IKFKAFDLGGHQI----ARRVWKD   83 (109)
Q Consensus        13 ~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~-~~i~~~d~~g~~~----~r~~~~~   83 (109)
                      +++++.+.+. ++|+|+||||||||+++|++...  .. ...|..+..|.+.+++ ..+.++|..|...    .+.+...
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~  228 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE  228 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH
Confidence            4566666665 69999999999999999998742  22 2234567788888886 8888999988632    2223333


Q ss_pred             h---hhcCCEEEEEEeCC
Q 033893           84 Y---YAKVIGSFKTKKIE   98 (109)
Q Consensus        84 ~---~~~~~~~v~~~~~~   98 (109)
                      |   ...++.++.+.+++
T Consensus       229 fl~~~era~~lL~vvDls  246 (416)
T 1udx_A          229 FLRHIARTRVLLYVLDAA  246 (416)
T ss_dssp             HHHHHTSSSEEEEEEETT
T ss_pred             HHHHHHHHHhhhEEeCCc
Confidence            3   34689999999886

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.90  E-value=3.9e-10  Score=93.87  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|++ +|+|+||||||||++.|.|.        ..++.|+|.++|.++.
T Consensus       405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~--------~~~~~G~i~i~g~~i~  455 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL--------YDPLDGMVSIDGQDIR  455 (1284)
T ss_dssp             SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS--------SCCSEEEEEETTEEGG
T ss_pred             ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEHH
Confidence            68899999999985 99999999999999999998        8889999999998764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.88  E-value=5.3e-09  Score=80.34  Aligned_cols=80  Identities=14%  Similarity=0.040  Sum_probs=62.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc------------------Ccccc-------cCCcccCceEEEEECCEEEEEEEcCCcc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD------------------ERLVQ-------HQPTQHPTSEELSIGKIKFKAFDLGGHQ   75 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g------------------~~~~~-------~~pt~~~~~g~i~~~~~~i~~~d~~g~~   75 (109)
                      .+|+|+|.+|||||||++.|..                  ....+       ...|.......+.++++.+.+||++|+.
T Consensus        14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~   93 (528)
T 3tr5_A           14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA   93 (528)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence            3579999999999999999951                  11111       1123344556778889999999999999


Q ss_pred             cccccHHhhhhcCCEEEEEEeCCCc
Q 033893           76 IARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        76 ~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      +++..+..+++.+|+++++.+.+..
T Consensus        94 df~~~~~~~l~~aD~allVvDa~~g  118 (528)
T 3tr5_A           94 DFTEDTYRTLTAVDSALMVIDAAKG  118 (528)
T ss_dssp             TCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred             hHHHHHHHHHHhCCEEEEEEeCCCC
Confidence            9999999999999999999987653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=3e-10  Score=85.07  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=30.1

Q ss_pred             HHHHhcCCcccccE--------------------E-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAK--------------------I-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~--------------------i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+|+++++.+++|+                    + +|+|+||||||||+|+|.|.
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            36777877777776                    5 99999999999999999997

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.86  E-value=3.2e-08  Score=69.65  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             HHHHHHHHhcCCc--ccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893            5 DWFYGILASLGLW--QKEAKILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus         5 ~~~~~~l~~v~~~--~~~~~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      +.+.+.|..+...  .+..+|+++|.+|||||||+++|.+.++
T Consensus         9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B            9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence            3444455554432  3456899999999999999999998875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.86  E-value=1.2e-08  Score=74.49  Aligned_cols=83  Identities=14%  Similarity=0.050  Sum_probs=59.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-cc--CCcccCceEEEEECCEEEEEEEcCCccccc---------ccHHhhhh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QH--QPTQHPTSEELSIGKIKFKAFDLGGHQIAR---------RVWKDYYA   86 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~--~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r---------~~~~~~~~   86 (109)
                      ...+++++|.+|+|||||++.+.+.... ..  .+|.....+.+..++..+.+||++|.....         .....+..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~  245 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRY  245 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHh
Confidence            4457899999999999999999987642 22  234445566777788899999999975421         12224455


Q ss_pred             cCCEEEEEEeCCCcc
Q 033893           87 KVIGSFKTKKIEFRD  101 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~  101 (109)
                      .+++++.+.|.+...
T Consensus       246 ~ad~illV~D~s~~~  260 (357)
T 2e87_A          246 LGNLIIYIFDPSEHC  260 (357)
T ss_dssp             TCSEEEEEECTTCTT
T ss_pred             cCCEEEEEEeCCccc
Confidence            789999999976543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.86  E-value=2.8e-09  Score=80.74  Aligned_cols=80  Identities=19%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCCccc--CceEEEEECCEEEEEEEcCCcccccccHH--------hhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARRVWK--------DYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~~~~--------~~~~~~   88 (109)
                      .+|+|+|.+|+|||||++.|.+.++  .+..|+..  +....+.+++..+.+||++|.......++        .++.++
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a  304 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA  304 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence            4689999999999999999997653  33334332  33467888999999999999765443333        367789


Q ss_pred             CEEEEEEeCCCc
Q 033893           89 IGSFKTKKIEFR  100 (109)
Q Consensus        89 ~~~v~~~~~~~~  100 (109)
                      |.++.+++.+..
T Consensus       305 D~vl~VvD~s~~  316 (462)
T 3geh_A          305 DLVLLTIDAATG  316 (462)
T ss_dssp             SEEEEEEETTTC
T ss_pred             CEEEEEeccCCC
Confidence            999999997654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.86  E-value=1.7e-08  Score=79.35  Aligned_cols=83  Identities=14%  Similarity=0.034  Sum_probs=62.2

Q ss_pred             cccccE-EEEEeCCCCcHHHHHHHHhcCccc--------------cc-------CCcccCceEEEEECCEEEEEEEcCCc
Q 033893           17 WQKEAK-ILFLGLDNAGKTTLLHMLKDERLV--------------QH-------QPTQHPTSEELSIGKIKFKAFDLGGH   74 (109)
Q Consensus        17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~--------------~~-------~pt~~~~~g~i~~~~~~i~~~d~~g~   74 (109)
                      ..++++ ++|+|++|+|||||+++|.+....              +.       ..+.......+..++..+.+||.+|+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            445555 699999999999999999843211              00       11223334556667899999999999


Q ss_pred             ccccccHHhhhhcCCEEEEEEeCCC
Q 033893           75 QIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        75 ~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      .+++..+..+++.+++++++.+.+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~  109 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEA  109 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTT
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCc
Confidence            9998888999999999999998643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.85  E-value=3.3e-09  Score=79.47  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--ccc--------------------------------ccCCcccCceEEEEECCEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--------------------------------~~~pt~~~~~g~i~~~~~~   65 (109)
                      .-+|+++|..|+|||||+++|.+.  .+.                                +...|.......+..++..
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~   85 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   85 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence            346899999999999999999753  121                                0112333333445566788


Q ss_pred             EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      +.+||.+|++++...+..+++++|+++++.+.+.
T Consensus        86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~  119 (435)
T 1jny_A           86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  119 (435)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence            9999999999998888999999999999999876

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.85  E-value=6e-10  Score=81.00  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=40.4

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      +++++++.+++++ ++|+|+||||||||+++|.+.        ..++.|.|.+++.
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~--------~~~~~g~i~i~~~  207 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF--------IPKEERIISIEDT  207 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG--------SCTTSCEEEEESS
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCCcEEEECCe
Confidence            6788888888887 599999999999999999998        6677788887663

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.85  E-value=5.3e-10  Score=91.00  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++
T Consensus       688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl--------l~P~sG~I~~~~  734 (986)
T 2iw3_A          688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE--------LLPTSGEVYTHE  734 (986)
T ss_dssp             SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS--------SCCSEEEEEECT
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEEcC
Confidence            57889999999975 99999999999999999999        788899999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.83  E-value=9e-09  Score=77.37  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=60.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc--cccCCc--ccCceEEEEECCEEEEEEEcCC----------cccccccHH-hh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL--VQHQPT--QHPTSEELSIGKIKFKAFDLGG----------HQIARRVWK-DY   84 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt--~~~~~g~i~~~~~~i~~~d~~g----------~~~~r~~~~-~~   84 (109)
                      ..+++++|.+|+|||||++.+.+.+.  ....|.  ..+....+.+++..+.+||++|          +++++.+.. .+
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~  274 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA  274 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence            35689999999999999999997752  233332  2344577888999999999999          677766655 47


Q ss_pred             hhcCCEEEEEEeCCC
Q 033893           85 YAKVIGSFKTKKIEF   99 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~   99 (109)
                      ++++++++++.|.+.
T Consensus       275 ~~~ad~~llviD~~~  289 (456)
T 4dcu_A          275 IDRSEVVAVVLDGEE  289 (456)
T ss_dssp             HHHCSEEEEEEETTT
T ss_pred             HhhCCEEEEEEeCCC
Confidence            889999999998765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.83  E-value=1.1e-09  Score=91.49  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=46.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++++++++|+. +|+|++|||||||++.|.|.        ..+..|+|.++|.++.
T Consensus       433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~--------~~~~~G~I~idG~~i~  483 (1321)
T 4f4c_A          433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--------YDVLKGKITIDGVDVR  483 (1321)
T ss_dssp             SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS--------SCCSEEEEEETTEETT
T ss_pred             eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc--------cccccCcccCCCccch
Confidence            58899999999985 99999999999999999998        8899999999998765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.83  E-value=6.2e-10  Score=92.64  Aligned_cols=50  Identities=22%  Similarity=0.381  Sum_probs=45.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||++.|.|.        ..++.|+|.++|.++.
T Consensus      1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~--------~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF--------YDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp             SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS--------SCCSEEEEESSSSCTT
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCEEcc
Confidence            68899999999985 99999999999999999998        8889999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.82  E-value=1.4e-08  Score=74.94  Aligned_cols=78  Identities=15%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccC--CcccCceEEEEEC---------------------CEEEEEEEcCCcccc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQ--PTQHPTSEELSIG---------------------KIKFKAFDLGGHQIA   77 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~--pt~~~~~g~i~~~---------------------~~~i~~~d~~g~~~~   77 (109)
                      +++|+|++|+|||||+++|.+... ....  .|..++.|.+.+.                     +..+.+||++|..+.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~   82 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG   82 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence            579999999999999999997642 1111  2455666665542                     356889999997653


Q ss_pred             c-------ccHHhhhhcCCEEEEEEeCCC
Q 033893           78 R-------RVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        78 r-------~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      .       ..+..+++++++++.+.+.+.
T Consensus        83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           83 AHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            2       123456889999999998765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.82  E-value=2.6e-10  Score=86.90  Aligned_cols=50  Identities=16%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|+++++++++ ++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++.
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA--------LIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH--------HCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC--------CCCCCCEEEECCEEcc
Confidence            457889999988 75 99999999999999999998        6777788888776543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.81  E-value=3.7e-09  Score=79.58  Aligned_cols=47  Identities=15%  Similarity=0.102  Sum_probs=41.0

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      .+|+++ +++.+|.+ +|+|+||||||||+++|++.        ..++.|.|.++|.
T Consensus       146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~--------~~~~~G~i~~~G~  193 (438)
T 2dpy_A          146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY--------TRADVIVVGLIGE  193 (438)
T ss_dssp             HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH--------SCCSEEEEEEESC
T ss_pred             eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCeEEEEEece
Confidence            478899 99988875 99999999999999999998        6778888877664

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.81  E-value=5.4e-10  Score=93.24  Aligned_cols=50  Identities=22%  Similarity=0.342  Sum_probs=46.3

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|+ ++|+|++|||||||++.|.+.        ..|..|+|.+||+++.
T Consensus      1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--------~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A         1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF--------YDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS--------SCCSSSEEEETTEETT
T ss_pred             cccceeEEECCCCEEEEECCCCChHHHHHHHHhcC--------ccCCCCEEEECCEEhh
Confidence            6899999999987 699999999999999999998        8888999999999776

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.80  E-value=1.3e-09  Score=83.87  Aligned_cols=47  Identities=26%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             cCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893           14 LGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA   68 (109)
Q Consensus        14 v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~   68 (109)
                      .++++++|++ +|+|+||||||||+++|.|.        ..++.|+|.+++..+.+
T Consensus       287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~~~~i~~  334 (538)
T 3ozx_A          287 DNGEAKEGEIIGILGPNGIGKTTFARILVGE--------ITADEGSVTPEKQILSY  334 (538)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCSBCCEESSCCCEEE
T ss_pred             ccceECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCeeeEe
Confidence            3456778886 99999999999999999998        78888999888766553

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.80  E-value=1.3e-09  Score=80.01  Aligned_cols=45  Identities=24%  Similarity=0.267  Sum_probs=38.4

Q ss_pred             HHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           11 LASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        11 l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++++++.+++++ ++|+|+||||||||+++|.+.        ..++.|.|.+++
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--------~~~~~g~I~ie~  210 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE--------IPFDQRLITIED  210 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--------SCTTSCEEEEES
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--------CCCCceEEEECC
Confidence            488888998887 599999999999999999998        666677777764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.79  E-value=4.1e-08  Score=69.10  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=36.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-c-cc-------CCcccCceEEEEE--CC--EEEEEEEcCCc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-V-QH-------QPTQHPTSEELSI--GK--IKFKAFDLGGH   74 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~-~~-------~pt~~~~~g~i~~--~~--~~i~~~d~~g~   74 (109)
                      .+|+++|.+|+|||||++.|.+.+. . ..       .||.+.+..+..+  ++  ..+.+||++|.
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~   75 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF   75 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence            4689999999999999999876653 2 23       5666665555544  33  48899999997

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.79  E-value=4e-09  Score=77.26  Aligned_cols=46  Identities=20%  Similarity=0.122  Sum_probs=39.0

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      .+|+++ +++.+|.+ +|+|+||||||||+++|.+.        ..++.|.+.+.|
T Consensus        60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~--------~~~~~g~i~~~G  106 (347)
T 2obl_A           60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG--------ASADIIVLALIG  106 (347)
T ss_dssp             HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH--------SCCSEEEEEEES
T ss_pred             EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCEEEEEEec
Confidence            478899 99988875 99999999999999999998        667777766644

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.79  E-value=1.9e-08  Score=78.48  Aligned_cols=81  Identities=19%  Similarity=0.074  Sum_probs=62.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc--cc--------------------------------cCCcccCceEEEEECCE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL--VQ--------------------------------HQPTQHPTSEELSIGKI   64 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~--~~--------------------------------~~pt~~~~~g~i~~~~~   64 (109)
                      +..+|+++|..|+|||||+++|.+...  ..                                ..-|.......+..++.
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~  245 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  245 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence            345799999999999999999986521  11                                01133333456667788


Q ss_pred             EEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           65 KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        65 ~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      .+.+||++|++++...+..+++++++++++.+.+.
T Consensus       246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~  280 (611)
T 3izq_1          246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST  280 (611)
T ss_dssp             EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred             eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence            99999999999988888899999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.79  E-value=2e-09  Score=75.96  Aligned_cols=45  Identities=22%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCc-eEEEEECC
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-SEELSIGK   63 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-~g~i~~~~   63 (109)
                      .+|++++  ++++. ++|+|+|||||||+++++.+.        ..++ .|+|.+++
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~--------~~~~~~G~I~~~g   61 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--------INQTKSYHIITIE   61 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH--------HHHHCCCEEEEEE
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh--------CCCCCCCEEEEcC
Confidence            3677887  66776 599999999999999999987        5554 57776544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.78  E-value=1.2e-08  Score=80.56  Aligned_cols=80  Identities=15%  Similarity=-0.004  Sum_probs=61.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC--ccc-------------------ccCCcccCceEEEEECCEEEEEEEcCCcccccc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE--RLV-------------------QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR   79 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~--~~~-------------------~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~   79 (109)
                      .+|+|+|..|+|||||++.|...  .+.                   +..+|+......+.+++..+.+||++|..++..
T Consensus        13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~   92 (691)
T 1dar_A           13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTI   92 (691)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHH
Confidence            45799999999999999999721  110                   223455555667788899999999999999999


Q ss_pred             cHHhhhhcCCEEEEEEeCCCc
Q 033893           80 VWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        80 ~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .+..+++.+|+++++.+.+..
T Consensus        93 ~~~~~l~~aD~~ilVvDa~~g  113 (691)
T 1dar_A           93 EVERSMRVLDGAIVVFDSSQG  113 (691)
T ss_dssp             HHHHHHHHCSEEEEEEETTTC
T ss_pred             HHHHHHHHCCEEEEEEECCCC
Confidence            999999999999999987654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.77  E-value=1.7e-09  Score=78.18  Aligned_cols=35  Identities=23%  Similarity=0.153  Sum_probs=32.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+|+++++.++++++ +|+|+||||||||++.|.|.
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            578999999999986 99999999999999999975

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.76  E-value=3.9e-09  Score=73.21  Aligned_cols=35  Identities=14%  Similarity=0.002  Sum_probs=23.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+|++++|+++++.+ +|+|+|||||||+++.|++.
T Consensus        13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999985 99999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.76  E-value=2.4e-09  Score=77.03  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      .+++..+++++ +++|+|||||||+++.|++.        ..++.|+|.+.+.
T Consensus        92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--------l~~~~g~V~l~g~  136 (302)
T 3b9q_A           92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--------LKNEGTKVLMAAG  136 (302)
T ss_dssp             SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--------HHHTTCCEEEECC
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHcCCeEEEEee
Confidence            46677778886 99999999999999999987        5555677766553

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.75  E-value=2.7e-08  Score=75.55  Aligned_cols=80  Identities=15%  Similarity=0.075  Sum_probs=60.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCc----c----cccC--CcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDER----L----VQHQ--PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~----~----~~~~--pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      ..+|+++|..++|||||+++|.+..    .    .+..  .|.......+.+++..+.++|.+|.+++...+..+++++|
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD   98 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIID   98 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCC
Confidence            4568999999999999999999875    1    1122  2333334556678899999999999998888888999999


Q ss_pred             EEEEEEeCCC
Q 033893           90 GSFKTKKIEF   99 (109)
Q Consensus        90 ~~v~~~~~~~   99 (109)
                      +++.+.+.+.
T Consensus        99 ~~ilVvda~~  108 (482)
T 1wb1_A           99 LALIVVDAKE  108 (482)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEecCC
Confidence            9999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.74  E-value=2.7e-09  Score=75.58  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      .++|+|+||||||||+++|.|.        ..++.|++.++|.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~--------~~~~~G~i~~~g~   38 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS--------QVSRKASSWNREE   38 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH--------HC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHhCC--------CCCCCCccccCCc
Confidence            5799999999999999999987        4455555555443

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.74  E-value=7.7e-08  Score=73.92  Aligned_cols=80  Identities=11%  Similarity=0.014  Sum_probs=60.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--ccc----------------c-------cCCcccCceEEEEECCEEEEEEEcCCc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--RLV----------------Q-------HQPTQHPTSEELSIGKIKFKAFDLGGH   74 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~----------------~-------~~pt~~~~~g~i~~~~~~i~~~d~~g~   74 (109)
                      ..+|+|+|..|+|||||++.|...  .+.                +       ...|.......+.+++..+.+||++|+
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~   92 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence            346899999999999999999853  110                0       001222334456778899999999999


Q ss_pred             ccccccHHhhhhcCCEEEEEEeCCC
Q 033893           75 QIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        75 ~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      .++...+..+++.+|+++.+.+.+.
T Consensus        93 ~df~~~~~~~l~~aD~~IlVvDa~~  117 (529)
T 2h5e_A           93 EDFSEDTYRTLTAVDCCLMVIDAAK  117 (529)
T ss_dssp             TTCCHHHHHGGGGCSEEEEEEETTT
T ss_pred             hhHHHHHHHHHHHCCEEEEEEeCCc
Confidence            9988888899999999999998754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.73  E-value=5.8e-08  Score=71.92  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCC----cc-------------------cCceEEEEECCEEEEEEEcCCcc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQ-------------------HPTSEELSIGKIKFKAFDLGGHQ   75 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~p----t~-------------------~~~~g~i~~~~~~i~~~d~~g~~   75 (109)
                      +..+|+++|..|+|||||+++|.+........    +.                   ....+........+.++|.+|.+
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~   86 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE   86 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence            45678999999999999999999743211000    00                   00000001112688899999999


Q ss_pred             cccccHHhhhhcCCEEEEEEeCCCc
Q 033893           76 IARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        76 ~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      ++...+..+++++|+++.+.+.+..
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~~  111 (403)
T 3sjy_A           87 VLMATMLSGAALMDGAILVVAANEP  111 (403)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEETTSC
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCC
Confidence            9999889999999999999987654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.73  E-value=3.7e-09  Score=69.80  Aligned_cols=28  Identities=25%  Similarity=0.385  Sum_probs=24.6

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHH
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHML   40 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l   40 (109)
                      +++|.++++++ +|+|+||||||||++++
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence            46788999986 99999999999999943

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.73  E-value=4.1e-08  Score=74.38  Aligned_cols=82  Identities=17%  Similarity=0.105  Sum_probs=60.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCc--cc------------------------------ccCC--cccCceEEEEECCE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDER--LV------------------------------QHQP--TQHPTSEELSIGKI   64 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~--~~------------------------------~~~p--t~~~~~g~i~~~~~   64 (109)
                      +.-+|+++|..|+|||||+++|.+..  +.                              +..+  |.......+..++.
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            44578999999999999999996431  10                              1111  22222334555678


Q ss_pred             EEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           65 KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        65 ~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .+.+||++|.+++...+..+++++|+++++.+.+..
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g  147 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  147 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence            999999999999999999999999999999998664

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.73  E-value=3.8e-08  Score=73.22  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccC--CcccCceEEEEE---------------------CC---EEEEEEEcCCc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQ--PTQHPTSEELSI---------------------GK---IKFKAFDLGGH   74 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~--pt~~~~~g~i~~---------------------~~---~~i~~~d~~g~   74 (109)
                      +|+|+|.+|+|||||+++|.+.+. ....  .|..+..|.+.+                     ++   ..+.+||++|.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~   81 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL   81 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence            689999999999999999998763 1222  244455564322                     32   57889999997


Q ss_pred             cc----ccccHH---hhhhcCCEEEEEEeCCCc
Q 033893           75 QI----ARRVWK---DYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        75 ~~----~r~~~~---~~~~~~~~~v~~~~~~~~  100 (109)
                      .+    .+.+..   .+++++|+++.+.+.+..
T Consensus        82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             -------------CCCSSTTCSEEEEEEETTCC
T ss_pred             ccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            53    233333   457899999999998654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.71  E-value=1.9e-08  Score=79.38  Aligned_cols=80  Identities=15%  Similarity=0.047  Sum_probs=61.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC--ccc-------------------ccCCcccCceEEEEECCEEEEEEEcCCcccccc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE--RLV-------------------QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR   79 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~--~~~-------------------~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~   79 (109)
                      .+|+|+|..|+|||||++.|.+.  .+.                   +..+|.......+.+++..+.++|++|..++..
T Consensus        11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~   90 (693)
T 2xex_A           11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTV   90 (693)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHH
Confidence            45799999999999999999841  111                   112344445567888899999999999999888


Q ss_pred             cHHhhhhcCCEEEEEEeCCCc
Q 033893           80 VWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        80 ~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .+..+++.+|+++.+.+.+..
T Consensus        91 ~~~~~l~~aD~~llVvDa~~g  111 (693)
T 2xex_A           91 EVERSLRVLDGAVTVLDAQSG  111 (693)
T ss_dssp             HHHHHHHHCSEEEEEEETTTB
T ss_pred             HHHHHHHHCCEEEEEECCCCC
Confidence            899999999999999987654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.71  E-value=3.6e-09  Score=77.07  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=31.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++++++..+++.+ +|+|+||||||||+++|.+.
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            478899999988885 99999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.71  E-value=2.6e-09  Score=80.89  Aligned_cols=46  Identities=22%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceE-E-EEECC
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE-E-LSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g-~-i~~~~   63 (109)
                      .+.++++.+++|+ ++|+|+||||||||+++|+|.        ..++.| + |.+++
T Consensus       127 ~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl--------~~p~~G~~pI~vdg  175 (460)
T 2npi_A          127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY--------ALKFNAYQPLYINL  175 (460)
T ss_dssp             HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT--------THHHHCCCCEEEEC
T ss_pred             hhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCc--------ccccCCceeEEEcC
Confidence            3457888888887 599999999999999999998        666677 6 77654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.70  E-value=7.8e-08  Score=71.22  Aligned_cols=78  Identities=19%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cc--cCCcccCceEEEEECCEEEEEEEcCCcccc----ccc---HHhhhhcCCEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQ--HQPTQHPTSEELSIGKIKFKAFDLGGHQIA----RRV---WKDYYAKVIGS   91 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~--~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~----r~~---~~~~~~~~~~~   91 (109)
                      +|+|+|.+++|||||+++|++.+. ..  ...|..+..|.+.+++..+.+.|++|.-+.    +.+   .-...+++|.+
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~i  153 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLL  153 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcc
Confidence            689999999999999999998753 22  223566788999999999999999884321    111   12456789999


Q ss_pred             EEEEeCCC
Q 033893           92 FKTKKIEF   99 (109)
Q Consensus        92 v~~~~~~~   99 (109)
                      +.+.|.+.
T Consensus       154 l~vvD~~~  161 (376)
T 4a9a_A          154 FIILDVNK  161 (376)
T ss_dssp             EEEEETTS
T ss_pred             ccccccCc
Confidence            99988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.70  E-value=3.8e-09  Score=81.25  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++.+++ .+++|++ +|+|+||||||||+++|+|.
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            466777 7888886 99999999999999999998

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.70  E-value=1.1e-09  Score=84.39  Aligned_cols=81  Identities=16%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEE-CCEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~-~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++.+|+++|..|+|||||+++|.+.++ ....|+..  +....+.. ++..+.+||++|++.+..++..+++.+|+++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            355789999999999999999997765 23334333  33334444 456788999999999999999999999999999


Q ss_pred             EeCCC
Q 033893           95 KKIEF   99 (109)
Q Consensus        95 ~~~~~   99 (109)
                      .+.+.
T Consensus        83 VDa~d   87 (537)
T 3izy_P           83 VAADD   87 (537)
T ss_dssp             CBSSS
T ss_pred             EECCC
Confidence            98754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.69  E-value=1.8e-08  Score=72.22  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC-cccc-cC--------CcccCceEEEEEC--C--EEEEEEEcCCc-------cccccc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE-RLVQ-HQ--------PTQHPTSEELSIG--K--IKFKAFDLGGH-------QIARRV   80 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~-~~~~-~~--------pt~~~~~g~i~~~--~--~~i~~~d~~g~-------~~~r~~   80 (109)
                      +|+|+|+||||||||+++|.+. .+.. ..        ++.....-.+...  +  ..+.+||..|.       ++++.+
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l   99 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI   99 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence            4699999999999999999876 3322 11        2222111112222  2  57889999887       566666


Q ss_pred             HH-------hhhhcCC
Q 033893           81 WK-------DYYAKVI   89 (109)
Q Consensus        81 ~~-------~~~~~~~   89 (109)
                      ..       .|+++..
T Consensus       100 ~~~l~~~~~~~~~~~s  115 (301)
T 2qnr_A          100 ISYIDEQFERYLHDES  115 (301)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            66       7776654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.69  E-value=5.2e-09  Score=77.09  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      .+++..+++++ +|+|+|||||||+++.|++.        ..+..|+|.+.+.
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~--------l~~~~G~V~l~g~  193 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--------LKNEGTKVLMAAG  193 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH--------HHHTTCCEEEECC
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhh--------ccccCCEEEEecc
Confidence            46777778886 99999999999999999987        5555677766554

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.69  E-value=7e-08  Score=72.43  Aligned_cols=80  Identities=15%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc--cc------------------------------cc--CCcccCceEEEEECCEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER--LV------------------------------QH--QPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~--~~------------------------------~~--~pt~~~~~g~i~~~~~~i   66 (109)
                      -+|+++|..++|||||+++|.+..  +.                              +.  ..|.......+..++..+
T Consensus        18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~   97 (439)
T 3j2k_7           18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF   97 (439)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence            468999999999999999994321  10                              01  112222334455678899


Q ss_pred             EEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           67 KAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        67 ~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .++|++|++++...+..+++++|+++++.+.+..
T Consensus        98 ~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g  131 (439)
T 3j2k_7           98 TILDAPGHKSFVPNMIGGASQADLAVLVISARKG  131 (439)
T ss_pred             EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence            9999999999988888999999999999987653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.69  E-value=2.3e-08  Score=73.65  Aligned_cols=70  Identities=10%  Similarity=-0.005  Sum_probs=55.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .|+++|..++|||||+++|..     ..+|.......+..++..+.+||.+|.+++......+++.+|+++++.+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~-----~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK-----KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE-----EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHh-----CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            689999999999999999981     1223333344555567889999999999887766778899999999998

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.68  E-value=7.4e-08  Score=72.65  Aligned_cols=80  Identities=13%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--ccc--------------------------------ccCCcccCceEEEEECCEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--------------------------------~~~pt~~~~~g~i~~~~~~   65 (109)
                      .-+|+++|..++|||||+++|.+.  .+.                                +...|.......+..++..
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~   86 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   86 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence            356899999999999999999753  111                                0122333334455667889


Q ss_pred             EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      +.+||.+|++++...+..+++++|+++++.+.+.
T Consensus        87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~  120 (458)
T 1f60_A           87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  120 (458)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence            9999999999988888889999999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.68  E-value=1.4e-08  Score=74.59  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=39.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc-cc-ccC--------CcccCceEEE--EECC--EEEEEEEcCCc-------ccccc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER-LV-QHQ--------PTQHPTSEEL--SIGK--IKFKAFDLGGH-------QIARR   79 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~-~~-~~~--------pt~~~~~g~i--~~~~--~~i~~~d~~g~-------~~~r~   79 (109)
                      .+|+|+|++|+|||||++.|.+.. +. ...        ||.......+  ..++  ..+.+||++|.       +.++.
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~  117 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT  117 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence            357999999999999999987654 22 221        3333322222  2234  36889999998       77788


Q ss_pred             cHH-------hhhhcCCEE
Q 033893           80 VWK-------DYYAKVIGS   91 (109)
Q Consensus        80 ~~~-------~~~~~~~~~   91 (109)
                      ++.       .|++.++++
T Consensus       118 i~~~i~~~~~~yl~~~~~~  136 (361)
T 2qag_A          118 IISYIDEQFERYLHDESGL  136 (361)
T ss_dssp             THHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            887       888876543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.68  E-value=3.1e-09  Score=82.81  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE
Q 033893           12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI   61 (109)
Q Consensus        12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~   61 (109)
                      +.+++.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.+
T Consensus       373 ~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl--------~~p~~G~I~~  415 (607)
T 3bk7_A          373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV--------EEPTEGKVEW  415 (607)
T ss_dssp             EECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--------SCCSBSCCCC
T ss_pred             EecccccCCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEE
Confidence            344556778876 99999999999999999998        6677777765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.67  E-value=2.7e-08  Score=80.01  Aligned_cols=81  Identities=15%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc------------ccc-------cCCcccCceEEEEEC----------------CEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER------------LVQ-------HQPTQHPTSEELSIG----------------KIK   65 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~------------~~~-------~~pt~~~~~g~i~~~----------------~~~   65 (109)
                      -+|+|+|..|+|||||+++|....            +.+       ...|+......+.+.                ++.
T Consensus        20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (842)
T 1n0u_A           20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   99 (842)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence            458999999999999999997531            110       112333333445453                688


Q ss_pred             EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      +.+||++|+.++...+..+++.+|+++++.|.+...
T Consensus       100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~  135 (842)
T 1n0u_A          100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV  135 (842)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS
T ss_pred             EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC
Confidence            999999999999999999999999999999986543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.67  E-value=6.3e-09  Score=79.51  Aligned_cols=48  Identities=10%  Similarity=-0.039  Sum_probs=39.4

Q ss_pred             HHHHhcCC-cccccEE-EEEeCCCCcHHHHHHH--HhcCcccccCCcccCceEEEEECCE
Q 033893            9 GILASLGL-WQKEAKI-LFLGLDNAGKTTLLHM--LKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus         9 ~~l~~v~~-~~~~~~i-~lvG~~GsGKSTll~~--l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      .+|+++++ .++++++ +|+|+||||||||+++  +.|.        ..++.|.+.+++.
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--------~~~~~g~i~v~g~   77 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--------IEFDEPGVFVTFE   77 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--------HHHCCCEEEEESS
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--------HhCCCCEEEEEEe
Confidence            36899999 9999986 9999999999999999  5676        5556677777654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.66  E-value=1e-07  Score=70.53  Aligned_cols=81  Identities=16%  Similarity=0.072  Sum_probs=58.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--------ccccc----------CCcccCceEE--EEECCEEEEEEEcCCcccccc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--------RLVQH----------QPTQHPTSEE--LSIGKIKFKAFDLGGHQIARR   79 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--------~~~~~----------~pt~~~~~g~--i~~~~~~i~~~d~~g~~~~r~   79 (109)
                      ..+|+++|..++|||||+++|.+.        .+...          .+....+...  +..++..+.+||++|.+++..
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   90 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   90 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHH
Confidence            346899999999999999999863        11110          1111122233  334568899999999999888


Q ss_pred             cHHhhhhcCCEEEEEEeCCCc
Q 033893           80 VWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        80 ~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .+..+++++|+++++.+.+..
T Consensus        91 ~~~~~~~~aD~~ilVvda~~g  111 (405)
T 2c78_A           91 NMITGAAQMDGAILVVSAADG  111 (405)
T ss_dssp             HHHHHHTTCSSEEEEEETTTC
T ss_pred             HHHHHHHHCCEEEEEEECCCC
Confidence            888899999999999987553

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.66  E-value=4.6e-09  Score=80.78  Aligned_cols=42  Identities=24%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE
Q 033893           12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI   61 (109)
Q Consensus        12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~   61 (109)
                      +.+++.+++|++ +|+|+||||||||+++|.|.        ..++.|+|.+
T Consensus       303 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--------~~p~~G~i~~  345 (538)
T 1yqt_A          303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV--------EEPTEGKIEW  345 (538)
T ss_dssp             EECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--------SCCSBCCCCC
T ss_pred             EeCccccCCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEE
Confidence            344556678876 99999999999999999998        6677777765

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.66  E-value=5.6e-08  Score=73.47  Aligned_cols=81  Identities=16%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC--ccc--------------------------------ccCCcccCceEEEEECCEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--------------------------------~~~pt~~~~~g~i~~~~~~   65 (109)
                      ..+|+++|..++|||||+++|...  .+.                                +..+|+......+..++..
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~  122 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  122 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence            346899999999999999998631  110                                1122333333456667899


Q ss_pred             EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      +.+||.+|++++...+..+++++|+++++.+.+..
T Consensus       123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence            99999999999988888889999999999997654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.66  E-value=1.6e-07  Score=70.15  Aligned_cols=80  Identities=21%  Similarity=0.159  Sum_probs=57.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc---cccc----------CCc-----------------------ccCceEEEEECCE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER---LVQH----------QPT-----------------------QHPTSEELSIGKI   64 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~---~~~~----------~pt-----------------------~~~~~g~i~~~~~   64 (109)
                      .+|+++|..++|||||+++|.+..   +...          .++                       .......+..++.
T Consensus        25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~  104 (434)
T 1zun_B           25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR  104 (434)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred             eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence            468999999999999999997542   1110          011                       1111122344678


Q ss_pred             EEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           65 KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        65 ~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      .+.+||++|++++...+..+++++|+++++.+.+..
T Consensus       105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g  140 (434)
T 1zun_B          105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG  140 (434)
T ss_dssp             EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred             eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            899999999999888888899999999999997653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.65  E-value=7.3e-09  Score=74.35  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=28.7

Q ss_pred             cccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc--CceEEEEE
Q 033893           19 KEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH--PTSEELSI   61 (109)
Q Consensus        19 ~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~--~~~g~i~~   61 (109)
                      .++.+ +|+|+||||||||+++|.+.        ..  ++.|++.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~--------l~~~~~~G~i~v  115 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL--------LSRWPEHRRVEL  115 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH--------HTTSTTCCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH--------HhhCCCCCeEEE
Confidence            56665 99999999999999999986        44  56677666

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.65  E-value=1.6e-08  Score=75.91  Aligned_cols=78  Identities=14%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCE-EEEEEEcCCccccccc-------HHhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKI-KFKAFDLGGHQIARRV-------WKDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~-~i~~~d~~g~~~~r~~-------~~~~~~~~   88 (109)
                      .+|+++|..|+|||||++++.+.++.  +..|  |..+....+.+.+. .+.+||++|.+++..+       +..++.++
T Consensus        35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a  114 (423)
T 3qq5_A           35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA  114 (423)
T ss_dssp             EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence            46899999999999999999987652  2222  33445566777664 8999999998876544       45688899


Q ss_pred             CEEEEEEeCC
Q 033893           89 IGSFKTKKIE   98 (109)
Q Consensus        89 ~~~v~~~~~~   98 (109)
                      +++++++|.+
T Consensus       115 D~vllVvD~~  124 (423)
T 3qq5_A          115 DCGILVTDSA  124 (423)
T ss_dssp             SEEEEECSSS
T ss_pred             CEEEEEEeCC
Confidence            9999999873

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.63  E-value=7.6e-09  Score=70.91  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=21.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh-cC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK-DE   43 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~-g~   43 (109)
                      ...++++.++++++ +|+|+|||||||++++|. +.
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            56789999999986 999999999999999999 75

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.63  E-value=7.2e-09  Score=80.80  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +|.+++ .+++|++ +|+|+||||||||+++|+|.
T Consensus       107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence            466777 7788876 99999999999999999998

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.63  E-value=1.4e-08  Score=68.73  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             CcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           16 LWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        16 ~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++++++ +|+|+||||||||+++|.|.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            36778886 99999999999999999986

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.62  E-value=5.3e-08  Score=72.07  Aligned_cols=80  Identities=18%  Similarity=0.083  Sum_probs=57.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCc-------ccc------------cCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDER-------LVQ------------HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV   80 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~-------~~~------------~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~   80 (109)
                      .-+|+++|..++|||||+++|.+..       +..            ...|.....-.+..++..+.+||.+|.+++...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            3468999999999999999998631       100            001111111123335688999999999988777


Q ss_pred             HHhhhhcCCEEEEEEeCCC
Q 033893           81 WKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~   99 (109)
                      +..+++++|+++++.+.+.
T Consensus        83 ~~~~~~~aD~~ilVvda~~  101 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAAND  101 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTT
T ss_pred             HHhhHhhCCEEEEEEECCC
Confidence            7888999999999998765

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.62  E-value=4.5e-08  Score=64.76  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++++++ +|+|+|||||||++++|++.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            556775 99999999999999999985

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.61  E-value=2.7e-08  Score=77.41  Aligned_cols=81  Identities=19%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCC-cccCceEEEEE--------------------CCEEEEEEEcCCcccc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQHPTSEELSI--------------------GKIKFKAFDLGGHQIA   77 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~p-t~~~~~g~i~~--------------------~~~~i~~~d~~g~~~~   77 (109)
                      +..+|+++|..++|||||+++|.+..+....| ....+.|....                    ....+.+||++|++.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45678999999999999999998765533332 11111111111                    1125889999999999


Q ss_pred             cccHHhhhhcCCEEEEEEeCCC
Q 033893           78 RRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        78 r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      ...+..+++.+|+++++.+.+.
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~  105 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINE  105 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTT
T ss_pred             HHHHHHHHhhCCEEEEEEECCC
Confidence            9998889999999999999865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.60  E-value=4.6e-08  Score=66.15  Aligned_cols=48  Identities=21%  Similarity=0.274  Sum_probs=33.5

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCccc---CceEEEEECCEE
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQH---PTSEELSIGKIK   65 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~---~~~g~i~~~~~~   65 (109)
                      +...+.-..++++ ++|+|+||||||||+++|.+.        ..   ...|.|..++..
T Consensus        11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~--------~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA--------LSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH--------HHHTTCCEEEEESGGGB
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH--------HhhcCCceEEEecCCCc
Confidence            3344432235666 499999999999999999986        32   346777776643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.59  E-value=1.1e-08  Score=80.21  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=26.6

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHH
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLL   37 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll   37 (109)
                      .+|++++|+++++++ +|+||||||||||+
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            368899999999986 99999999999997

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.59  E-value=1.2e-08  Score=78.05  Aligned_cols=42  Identities=21%  Similarity=0.356  Sum_probs=34.3

Q ss_pred             hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893           13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus        13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      ++++.++++++ +|+|+|||||||+++.|++.        ..+..|+|.+.
T Consensus       285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl--------l~~~~G~V~l~  327 (503)
T 2yhs_A          285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ--------FEQQGKSVMLA  327 (503)
T ss_dssp             CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--------HHHTTCCEEEE
T ss_pred             CceeeccCCeEEEEECCCcccHHHHHHHHHHH--------hhhcCCeEEEe
Confidence            56788888886 99999999999999999987        55555666664

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.59  E-value=1.5e-08  Score=78.07  Aligned_cols=34  Identities=35%  Similarity=0.456  Sum_probs=27.9

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEE
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEEL   59 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i   59 (109)
                      .++|++ +|+|+||||||||+++|+|.        ..|+.|++
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl--------~~p~~G~i   56 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGE--------IIPNFGDP   56 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTS--------SCCCTTCT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCCcc
Confidence            356776 99999999999999999998        55555554

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.58  E-value=7.1e-08  Score=74.40  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc----ccCCcccCce-------EEEEEC-----------------------C---
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV----QHQPTQHPTS-------EELSIG-----------------------K---   63 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~----~~~pt~~~~~-------g~i~~~-----------------------~---   63 (109)
                      .+|+|+|..|+|||||++.|.+.++.    ...|+.....       +.+..+                       +   
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~  145 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMC  145 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceE
Confidence            46899999999999999999988752    2333221100       011100                       0   


Q ss_pred             --------EEEEEEEcCCccc-----------ccccHHhhhhcCCEEEEEEeCCC
Q 033893           64 --------IKFKAFDLGGHQI-----------ARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        64 --------~~i~~~d~~g~~~-----------~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                              ..+.++|++|...           +...+..++..+|+++.+.+.+.
T Consensus       146 ~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~  200 (550)
T 2qpt_A          146 AQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK  200 (550)
T ss_dssp             EECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred             EeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence                    2477889999764           34567788999999999998755

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.58  E-value=2.1e-07  Score=67.81  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCC--cccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893            5 DWFYGILASLGL--WQKEAKILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus         5 ~~~~~~l~~v~~--~~~~~~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      +.+.+.|..++.  ..+..+|+++|.+|||||||+++|.|.++
T Consensus        14 ~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~   56 (353)
T 2x2e_A           14 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF   56 (353)
T ss_dssp             HHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred             HHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCc
Confidence            445555555443  23456899999999999999999998875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.57  E-value=1.6e-08  Score=77.44  Aligned_cols=47  Identities=30%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      .+++.+++.++++. ++|+|+|||||||+++++.+.        ..++.|.+.+++
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~--------i~~~~giitied  295 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF--------IPPDAKVVSIED  295 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG--------SCTTCCEEEEES
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--------CCCCCCEEEEcC
Confidence            35667777777777 699999999999999999987        666667776654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.56  E-value=1.6e-08  Score=72.44  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=24.0

Q ss_pred             cE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE
Q 033893           21 AK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI   61 (109)
Q Consensus        21 ~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~   61 (109)
                      ++ ++++|+||||||||+++|.|.        ..++.|+|.+
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~--------~~~~~G~i~~  202 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG--------LKLRVSEVSE  202 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT--------CCCC------
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc--------ccccccceec
Confidence            45 599999999999999999998        6677788776

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.56  E-value=3e-08  Score=66.21  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=22.2

Q ss_pred             CcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           16 LWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        16 ~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +...++++ +|+|+|||||||++++|.+.
T Consensus         2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            2 NAMNKANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            34456665 99999999999999999975

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.55  E-value=2e-07  Score=73.71  Aligned_cols=80  Identities=14%  Similarity=-0.084  Sum_probs=60.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC--ccc-------------------ccCCcccCceEEEEECC-------EEEEEEEcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE--RLV-------------------QHQPTQHPTSEELSIGK-------IKFKAFDLG   72 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~--~~~-------------------~~~pt~~~~~g~i~~~~-------~~i~~~d~~   72 (109)
                      .+|+|+|..|+|||||+..|...  .+.                   +..+|+......+.+++       +.+.+||++
T Consensus        11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP   90 (704)
T 2rdo_7           11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP   90 (704)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence            45899999999999999999632  111                   01123333334555666       899999999


Q ss_pred             CcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           73 GHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        73 g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      |+.++...+..+++.+|+++++.+.+..
T Consensus        91 G~~df~~~~~~~l~~aD~aIlVvDa~~g  118 (704)
T 2rdo_7           91 GHVDFTIEVERSMRVLDGAVMVYCAVGG  118 (704)
T ss_pred             CccchHHHHHHHHHHCCEEEEEEeCCCC
Confidence            9999888889999999999999987643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.55  E-value=1.2e-08  Score=75.15  Aligned_cols=34  Identities=24%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++++++.+.++.++|+|+||||||||+++|.+.
T Consensus        50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4678889999996699999999999999998543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.54  E-value=1.1e-08  Score=78.16  Aligned_cols=81  Identities=11%  Similarity=0.066  Sum_probs=60.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ++.+|+++|..++|||||+++|.+.++. ...+...  .....+.+++..+.+||++|++.+...+..+++.+|+++++.
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV   82 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV   82 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence            4557899999999999999999875542 2222222  222234456778899999999999988888899999999999


Q ss_pred             eCCC
Q 033893           96 KIEF   99 (109)
Q Consensus        96 ~~~~   99 (109)
                      +.+.
T Consensus        83 da~~   86 (501)
T 1zo1_I           83 AADD   86 (501)
T ss_dssp             ETTT
T ss_pred             eccc
Confidence            8654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.54  E-value=2.2e-08  Score=68.52  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+|+++    +++++ +|+|+||||||||+++|+|.
T Consensus        14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            366665    56664 99999999999999999986

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.53  E-value=2.4e-08  Score=68.78  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      -+++++ +|+||||||||||+++|.+.
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            456775 99999999999999999986

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.52  E-value=8.7e-08  Score=67.78  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++++++..+++ ++|+||||||||||++++++.
T Consensus        34 ~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           34 DQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             HHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence            4678888888888 999999999999999999986

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.51  E-value=1.9e-08  Score=66.93  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFKAFD   70 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~~~d   70 (109)
                      .++|+|+||||||||++.|.+.        ..+.   .|.|.+++..+..+|
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~--------~~~~g~~~G~I~~dg~~i~~~~   47 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI--------LRERGLRVAVVKRHAHGDFEID   47 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH--------HHHTTCCEEEEEC---------
T ss_pred             EEEEECCCCCCHHHHHHHHHHH--------hhhcCCceEEEEEcCcccccCC
Confidence            4699999999999999999987        5444   799999988765343

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.51  E-value=6.7e-08  Score=75.27  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccC-ceEEEEECCEEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-TSEELSIGKIKFKAFD   70 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-~~g~i~~~~~~i~~~d   70 (109)
                      ..++|+|+||||||||+++|.|.        ..| +.|.|.+++.++....
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl--------~~P~~sG~vt~~g~~i~~~~   88 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGV--------ALPRGSGIVTRCPLVLKLKK   88 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSC--------C-------CCCSCEEEEEEE
T ss_pred             CeEEEECCCCChHHHHHHHHhCC--------CCCCCCCeEEEcCEEEEEec
Confidence            34999999999999999999998        555 6899999998875444

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.50  E-value=5.9e-07  Score=66.57  Aligned_cols=80  Identities=20%  Similarity=0.128  Sum_probs=56.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc----cccCC--cccCceEEEEE------------------C-----CEEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL----VQHQP--TQHPTSEELSI------------------G-----KIKFKAFD   70 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~----~~~~p--t~~~~~g~i~~------------------~-----~~~i~~~d   70 (109)
                      ..+|+++|..++|||||+++|.+...    .+..+  |.........+                  +     ...+.++|
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            34679999999999999999996532    22333  33322222222                  1     16789999


Q ss_pred             cCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           71 LGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        71 ~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      .+|.+++..........+|+++++.+.+.
T Consensus        90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~  118 (410)
T 1kk1_A           90 APGHEALMTTMLAGASLMDGAILVIAANE  118 (410)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTS
T ss_pred             CCChHHHHHHHHhhhhhCCEEEEEEECCC
Confidence            99998877666666778899999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.49  E-value=2.7e-08  Score=77.64  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=28.7

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEE
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEEL   59 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i   59 (109)
                      ..++|++ +|+|+||||||||+++|+|.        ..|+.|+|
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl--------l~P~~G~i  134 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGK--------QKPNLGRF  134 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTS--------SCCCTTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCceE
Confidence            3567775 99999999999999999998        56666654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.49  E-value=5.5e-07  Score=66.78  Aligned_cols=81  Identities=16%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc----cccCC--cccCceEEEEE---------------C--------CEEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL----VQHQP--TQHPTSEELSI---------------G--------KIKFKAF   69 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~----~~~~p--t~~~~~g~i~~---------------~--------~~~i~~~   69 (109)
                      +.-+|+++|..++|||||+++|.+...    .+..+  |.........+               +        ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            345689999999999999999996532    22333  33322111111               1        1678999


Q ss_pred             EcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           70 DLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        70 d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      |.+|++++...+.....++|+++++.+.+.
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~  116 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANE  116 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTS
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCC
Confidence            999999887766666778899999998763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.49  E-value=4.8e-08  Score=71.95  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCccc-CceEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH-PTSEELSI   61 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-~~~g~i~~   61 (109)
                      ..++|+|+||||||||+++|.|.        .. +..|+|..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~--------~~~~~~G~I~~  249 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL--------QNEILTNDVSN  249 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC--------SSCCCCC----
T ss_pred             CEEEEECCCCccHHHHHHHHhcc--------ccccccCCccc
Confidence            34699999999999999999987        44 55555554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.48  E-value=2.5e-07  Score=73.08  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCc---------eEEEEE--------------------CC----
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPT---------SEELSI--------------------GK----   63 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~---------~g~i~~--------------------~~----   63 (109)
                      +..+|+++|..|+|||||+++|.|.++.  ...|+....         ..++.+                    ++    
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4557899999999999999999988652  233433100         001111                    00    


Q ss_pred             --------------------------EEEEEEEcCCccc---ccccHHhhhhcCCEEEEEEeCCCc
Q 033893           64 --------------------------IKFKAFDLGGHQI---ARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        64 --------------------------~~i~~~d~~g~~~---~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                                                ..+.++|++|...   ....+..|+.++|+++.+.+.+..
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~  213 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP  213 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc
Confidence                                      2477889999654   345667899999999999987543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.48  E-value=3.3e-08  Score=77.15  Aligned_cols=33  Identities=30%  Similarity=0.500  Sum_probs=28.4

Q ss_pred             HHhcCCccccc-----EE-EEEeCCCCcHHHHHHHHhcC
Q 033893           11 LASLGLWQKEA-----KI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        11 l~~v~~~~~~~-----~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++++++++.++     ++ +|+|+||||||||+++|.|.
T Consensus       363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred             cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC
Confidence            45677777777     54 99999999999999999998

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.46  E-value=4.3e-08  Score=69.41  Aligned_cols=35  Identities=11%  Similarity=0.111  Sum_probs=31.3

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..|+++++.++++++ +|+|+||||||||++.+++.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            357888888999986 99999999999999999986

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.46  E-value=1.2e-07  Score=64.03  Aligned_cols=27  Identities=30%  Similarity=0.223  Sum_probs=24.3

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++++ +|+|+||||||||++++++.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5778886 99999999999999999974

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.45  E-value=6.9e-08  Score=72.33  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893            9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      .+|+++ +..+.+-++|+|+|||||||+++++.+.        ..+..|+|.+.
T Consensus       157 ~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~--------l~~~~g~I~~~  201 (418)
T 1p9r_A          157 DNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE--------LNSSERNILTV  201 (418)
T ss_dssp             HHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH--------HCCTTSCEEEE
T ss_pred             HHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh--------cCCCCCEEEEe
Confidence            456676 4433344699999999999999999986        44445555543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.45  E-value=4.8e-08  Score=73.42  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             HHhcCCcccccE---EEEEeCCCCcHHHHHHHHhcCcc
Q 033893           11 LASLGLWQKEAK---ILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus        11 l~~v~~~~~~~~---i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      |+++++.+++|.   ++|+|+||||||||+++|.|..+
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence            788899998886   69999999999999999998754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.43  E-value=5.6e-08  Score=70.69  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             cccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893           19 KEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        19 ~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~   65 (109)
                      +++++ +++|+|||||||+++.|++.        ..+..|+|.+.+.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~--------l~~~~g~V~l~g~D  166 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANW--------LKNHGFSVVIAASD  166 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHH--------HHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--------HHhcCCEEEEEeec
Confidence            45675 99999999999999999987        55666777665543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.42  E-value=2.3e-07  Score=69.23  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=41.9

Q ss_pred             cCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           53 HPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        53 ~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      +....++.+++..+.+||++|++++|.+|..||+++++++++++++.
T Consensus       206 Gi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~  252 (402)
T 1azs_C          206 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS  252 (402)
T ss_dssp             SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred             eeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence            33444677889999999999999999999999999999999999987

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.41  E-value=5.8e-08  Score=69.60  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             cEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++ +++|+||||||||+++|. .
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~  187 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-G  187 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-H
Confidence            554 999999999999999999 7

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.40  E-value=1.4e-07  Score=62.83  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++|+|+||||||||+++|.|.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999999976

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.40  E-value=4.7e-08  Score=70.38  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~   65 (109)
                      +++ ++|+|+|||||||+++.|++.        ..++.|+|.+.+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl--------l~~~~g~V~l~g~D  139 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY--------YQNLGKKVMFCAGD  139 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH--------HHTTTCCEEEECCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH--------HHhcCCEEEEEeec
Confidence            455 599999999999999999987        66666777766543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.40  E-value=4.6e-08  Score=79.76  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDER   44 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~   44 (109)
                      +|++++|.+++|++ +|+|+||||||||+++|.++.
T Consensus       450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999986 999999999999999999654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.39  E-value=4.7e-08  Score=70.62  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=23.0

Q ss_pred             CcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           16 LWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        16 ~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +...++++ +|+|+||||||||+++|.+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence            34455665 99999999999999999987

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.38  E-value=4.1e-07  Score=70.88  Aligned_cols=79  Identities=18%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCc--cc------ccCC----------cccCceEEEEEC-----CEEEEEEEcCCccccc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDER--LV------QHQP----------TQHPTSEELSIG-----KIKFKAFDLGGHQIAR   78 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~--~~------~~~p----------t~~~~~g~i~~~-----~~~i~~~d~~g~~~~r   78 (109)
                      +++|+|..++|||||+.+|....  +.      ...+          |.......+.+.     ++.+.+||++|..++.
T Consensus         6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~   85 (599)
T 3cb4_D            6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS   85 (599)
T ss_dssp             EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH
Confidence            47999999999999999997421  11      0101          111112233332     3788999999999999


Q ss_pred             ccHHhhhhcCCEEEEEEeCCCc
Q 033893           79 RVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        79 ~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      ..+..+++.+|+++++.|.+..
T Consensus        86 ~ev~~~l~~aD~aILVVDa~~g  107 (599)
T 3cb4_D           86 YEVSRSLAACEGALLVVDAGQG  107 (599)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTC
T ss_pred             HHHHHHHHHCCEEEEEEECCCC
Confidence            9999999999999999997654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.38  E-value=7.8e-08  Score=70.27  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=28.6

Q ss_pred             HHhcCCcccc--cE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           11 LASLGLWQKE--AK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        11 l~~v~~~~~~--~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...+++.+.+  ++ ++|+|+||||||||+++|+|.
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567888887  76 599999999999999999987

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.38  E-value=7.9e-07  Score=69.33  Aligned_cols=79  Identities=15%  Similarity=0.065  Sum_probs=54.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC--cccc------cC----------CcccCceEEEEEC-----CEEEEEEEcCCccccc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE--RLVQ------HQ----------PTQHPTSEELSIG-----KIKFKAFDLGGHQIAR   78 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~--~~~~------~~----------pt~~~~~g~i~~~-----~~~i~~~d~~g~~~~r   78 (109)
                      +++|+|..++|||||+++|...  .+..      ..          .|.......+.+.     ++.+.+||++|..++.
T Consensus         8 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~   87 (600)
T 2ywe_A            8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS   87 (600)
T ss_dssp             EEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH
Confidence            4799999999999999999642  1110      00          1111122344342     2788899999999998


Q ss_pred             ccHHhhhhcCCEEEEEEeCCCc
Q 033893           79 RVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        79 ~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      ..+..+++.+|+++++.|.+..
T Consensus        88 ~ev~r~l~~aD~aILVVDa~~g  109 (600)
T 2ywe_A           88 YEVSRALAACEGALLLIDASQG  109 (600)
T ss_dssp             HHHHHHHHTCSEEEEEEETTTB
T ss_pred             HHHHHHHHhCCEEEEEEECCCC
Confidence            8889999999999999997654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.38  E-value=2.8e-07  Score=67.64  Aligned_cols=52  Identities=21%  Similarity=0.402  Sum_probs=45.3

Q ss_pred             CcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           50 PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        50 pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      ||.+....++.+++..+.+||++|++++|.+|.+||+++++++.+++++.++
T Consensus       179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d  230 (353)
T 1cip_A          179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD  230 (353)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred             ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccc
Confidence            3455555677888999999999999999999999999999999999998753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.38  E-value=2.1e-07  Score=69.67  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      +|+|+|+||||||||+++|.|..+
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            479999999999999999998865

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.36  E-value=1.3e-07  Score=63.63  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++ ++|+||||||||||++.|.+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            344 699999999999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.35  E-value=4.6e-08  Score=76.69  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      +|++++++++++++ +|+|+||||||||++++.
T Consensus       337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            58899999999986 999999999999998653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.34  E-value=1.9e-07  Score=67.38  Aligned_cols=26  Identities=23%  Similarity=0.153  Sum_probs=23.3

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.+ +|+|+||||||||+++|.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            567775 99999999999999999986

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=2.1e-07  Score=62.36  Aligned_cols=33  Identities=27%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++++++..++++ |+|+|++||||||+.+.|+.
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999998886 59999999999999999984

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.34  E-value=5.2e-08  Score=65.68  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++|+|+|||||||+++.+++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4699999999999999999986

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.34  E-value=2e-07  Score=61.25  Aligned_cols=31  Identities=10%  Similarity=0.089  Sum_probs=26.0

Q ss_pred             HhcCCcccccEEEEEeCCCCcHHHHHHHHhc
Q 033893           12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        12 ~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +++++...++-.+|+|+||||||||+++|..
T Consensus        18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SCEEEECCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccEEEecCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4566677778669999999999999999974

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.33  E-value=7e-08  Score=75.00  Aligned_cols=78  Identities=15%  Similarity=0.043  Sum_probs=40.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCc--cc------------------------------ccCC--cccCceEEEEECCEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDER--LV------------------------------QHQP--TQHPTSEELSIGKIKFK   67 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~--~~------------------------------~~~p--t~~~~~g~i~~~~~~i~   67 (109)
                      +|+++|..++|||||+++|.+..  +.                              +..+  |.......+..++..+.
T Consensus       179 ~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~  258 (592)
T 3mca_A          179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYE  258 (592)
T ss_dssp             EEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEE
Confidence            58999999999999999995321  00                              0011  22222334455668889


Q ss_pred             EEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           68 AFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        68 ~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      ++|++|++++...+..+++++|+++++.+.+.
T Consensus       259 iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          259 IGDAPGHRDFISGMIAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred             EEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            99999999988877888999999888887653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.32  E-value=4.6e-07  Score=62.63  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++++++..+++ ++|+|++|+|||||++++.+.
T Consensus        39 ~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           39 SRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             HHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence            4577788888777 999999999999999999975

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.30  E-value=2.2e-07  Score=62.65  Aligned_cols=35  Identities=14%  Similarity=-0.019  Sum_probs=28.7

Q ss_pred             HHHHhcCC-cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGL-WQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~-~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..|+++.. .++++++ +|+|+||||||||++.+++.
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            45677765 6778886 99999999999999999854

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.30  E-value=3.2e-07  Score=60.69  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             cE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++ ++|+||||||||||++.|.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            44 599999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.30  E-value=2e-07  Score=67.10  Aligned_cols=44  Identities=27%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++|+|++||||||+++.|.+..-....-.+.++.|+|.+++..+
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l   50 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI   50 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred             EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence            49999999999999999998621011001134567777766554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.29  E-value=2.2e-07  Score=68.44  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=25.1

Q ss_pred             HHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           11 LASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        11 l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      |++++  .+++. ++|+|+|||||||+++++.+.
T Consensus       128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45554  45565 599999999999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.29  E-value=4.6e-07  Score=65.83  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=28.5

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+++++++...++. ++++|++||||||+++.|.+
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            46777887777776 59999999999999999964

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.29  E-value=5.9e-07  Score=63.03  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++++++..+++ ++|+|++|+|||||++++.+.
T Consensus        63 ~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           63 SRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             HHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence            4567788888877 999999999999999999975

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.28  E-value=4.6e-07  Score=60.86  Aligned_cols=25  Identities=32%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++. ++|+|+|||||||+++.|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4555 599999999999999999975

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.28  E-value=2.1e-08  Score=69.60  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=24.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ++|+||||||||||+++|++.        ..++.|.|.+++.++
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~--------~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA--------LIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH--------HSCCTTTC-------
T ss_pred             EEEECCCCCCHHHHHHHHhcc--------cccCCCeEEECCEEc
Confidence            489999999999999999987        555566666666544

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.26  E-value=6.2e-07  Score=59.70  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=22.0

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.+++ ++|+|++||||||+++.|.+.
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45566 599999999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.26  E-value=2.3e-07  Score=64.12  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHh---cC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLK---DE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~---g~   43 (109)
                      +..++|+|+|||||||+++.|+   |.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~   53 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGL   53 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3457999999999999999999   76

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.23  E-value=3e-06  Score=70.50  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc-------ccc--------cCCccc--CceE--EEEECCEEEEEEEcCCcccccccH
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER-------LVQ--------HQPTQH--PTSE--ELSIGKIKFKAFDLGGHQIARRVW   81 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~-------~~~--------~~pt~~--~~~g--~i~~~~~~i~~~d~~g~~~~r~~~   81 (109)
                      .+|+++|..++|||||+++|.+..       +..        .+++.+  .+..  .+..++..+.+||++|++++....
T Consensus       297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~m  376 (1289)
T 3avx_A          297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNM  376 (1289)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHH
Confidence            468999999999999999998631       000        011111  1112  233356889999999999988888


Q ss_pred             HhhhhcCCEEEEEEeCCCc
Q 033893           82 KDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        82 ~~~~~~~~~~v~~~~~~~~  100 (109)
                      ..+++++|+++++.+.+..
T Consensus       377 i~gas~AD~aILVVDAtdG  395 (1289)
T 3avx_A          377 ITGAAQMDGAILVVAATDG  395 (1289)
T ss_dssp             HHTSCCCSEEEEEEETTTC
T ss_pred             HHHHhhCCEEEEEEcCCcc
Confidence            8889999999999987653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.22  E-value=5.3e-07  Score=60.42  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=24.2

Q ss_pred             cCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           14 LGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        14 v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..+..+++++ +|+|+|||||||+.+.|.+.
T Consensus        18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             HHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3344466775 99999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.21  E-value=3.5e-07  Score=64.15  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             HHHHhcCCcccc---cE-EEEEeCCCCcHHHHHHHHhc
Q 033893            9 GILASLGLWQKE---AK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus         9 ~~l~~v~~~~~~---~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+|+++++.+.+   ++ |+|+|++||||||+.+.|++
T Consensus        33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            478999999988   76 69999999999999999986

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.20  E-value=7.7e-07  Score=65.86  Aligned_cols=37  Identities=30%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             HHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893            7 FYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         7 ~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...+++++++.++++++ +|+|++|||||||++.+.+.
T Consensus       155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45678888889988875 99999999999999999863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.17  E-value=8.6e-07  Score=59.39  Aligned_cols=26  Identities=31%  Similarity=0.639  Sum_probs=21.0

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++ ++|+|+|||||||+++.|.+.
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34565 599999999999999999864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.15  E-value=1e-06  Score=64.79  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=36.8

Q ss_pred             cccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           51 TQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        51 t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      |.+....++.+++..+.+||++|++.+|..|.+||.++++++.+++++.+
T Consensus       188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~  237 (362)
T 1zcb_A          188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEF  237 (362)
T ss_dssp             CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCT
T ss_pred             ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccc
Confidence            34445556788899999999999999999999999999999999999873

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.15  E-value=1.2e-06  Score=57.95  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      ++|+|+|||||||+++.|++
T Consensus         5 i~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            49999999999999999985

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.15  E-value=1.1e-06  Score=59.34  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++++ ++|+|||||||||+++.|.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3566 599999999999999999865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.14  E-value=6.7e-07  Score=65.68  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=22.2

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+.+.++|+|+|||||||+++++.+.
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            34455699999999999999999876

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.12  E-value=5.8e-07  Score=72.07  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=28.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDER   44 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~   44 (109)
                      +++++++. +++++ +|+|||||||||+++++++..
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            45677887 67775 999999999999999998753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.11  E-value=1.2e-06  Score=57.47  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           16 LWQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        16 ~~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +...+++ ++|+|++|+|||||++++.+.
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4555666 599999999999999999864

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.11  E-value=4.4e-07  Score=73.69  Aligned_cols=34  Identities=12%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++++++..+++++ +|+|||||||||+++++.+.
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            45678888888886 99999999999999998743

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.10  E-value=2.6e-06  Score=62.21  Aligned_cols=29  Identities=31%  Similarity=0.233  Sum_probs=26.2

Q ss_pred             CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +..++++++ .|+|+||||||||++.+++.
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            567889987 99999999999999999976

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.09  E-value=9e-07  Score=62.34  Aligned_cols=55  Identities=25%  Similarity=0.340  Sum_probs=34.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEEEEEEcCCccc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFKAFDLGGHQI   76 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i~~~d~~g~~~   76 (109)
                      .+++++|.+|+|||||++.+.+.......++.+.  ....+..+ ..+.+||++|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE-NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT-TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC-CCEEEEECCCccc
Confidence            4789999999999999999998765433333222  22233333 3567889988553

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.09  E-value=4.4e-06  Score=60.95  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..|+|+|++|||||||++.|.+
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3569999999999999999986

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.07  E-value=1.2e-06  Score=64.37  Aligned_cols=30  Identities=17%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             HhcCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        12 ~~v~~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +++++...++-.+|+|+||||||||+.+|.
T Consensus        15 ~~~~i~~~~g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           15 KNVDIEFQSGITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence            455666777756999999999999999987

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.07  E-value=2e-06  Score=58.96  Aligned_cols=29  Identities=24%  Similarity=0.127  Sum_probs=24.4

Q ss_pred             CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..+.+++.+ +|.|++||||||+++.|.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            345577775 99999999999999999874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.04  E-value=2.5e-06  Score=55.36  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|+|++||||||+.+.|++.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.03  E-value=3.4e-06  Score=55.00  Aligned_cols=25  Identities=12%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++ ++|+|++||||||+.+.|.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3455 599999999999999999753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.03  E-value=2.7e-06  Score=57.81  Aligned_cols=25  Identities=16%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -+++ ++|+||||||||||++.|.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3455 599999999999999999854

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.02  E-value=9.7e-07  Score=61.47  Aligned_cols=22  Identities=41%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHh
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~   41 (109)
                      ++. |+|+|++||||||+++.|+
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            444 6999999999999999999

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.00  E-value=5.7e-06  Score=55.49  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=22.0

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.+ +|+|++||||||+++.|.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            455664 99999999999999999864

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.00  E-value=1.4e-06  Score=70.91  Aligned_cols=31  Identities=16%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHH
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHML   40 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l   40 (109)
                      +++++++...++++ +|+|||||||||+++++
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence            35678888888886 99999999999999999

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.99  E-value=2.6e-06  Score=55.09  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ...++-.+|+|+|||||||++.+|.
T Consensus        20 ~f~~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           20 EFKEGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             ECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             EcCCCeEEEECCCCCCHHHHHHHHH
Confidence            3445556999999999999999886

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.98  E-value=1.4e-06  Score=69.57  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=26.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDER   44 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~   44 (109)
                      +++++++.   +++ +|+|||||||||+++++++..
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence            34567666   665 999999999999999998763

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.97  E-value=2.4e-06  Score=62.78  Aligned_cols=32  Identities=34%  Similarity=0.199  Sum_probs=27.1

Q ss_pred             HHhcCCcccccEEEEEeCCCCcHHHHHHHHhc
Q 033893           11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ++++++.+.++-++|+|+|||||||++.++.+
T Consensus        17 ~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           17 LAPGTLNFPEGVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             CCSEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEcCCeEEEECCCCCChhHHHHHHHH
Confidence            45677778888559999999999999999974

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.96  E-value=2.7e-06  Score=62.41  Aligned_cols=36  Identities=25%  Similarity=0.508  Sum_probs=33.0

Q ss_pred             CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           63 KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        63 ~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ...+.+||++|++++|.+|..||+++++++.+++++
T Consensus       182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis  217 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS  217 (354)
T ss_dssp             --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred             ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence            478999999999999999999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.94  E-value=6.7e-06  Score=55.81  Aligned_cols=27  Identities=26%  Similarity=0.253  Sum_probs=23.6

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++++ +|+|+||||||||++.+++.
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4677776 99999999999999999973

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.92  E-value=7.5e-06  Score=54.79  Aligned_cols=33  Identities=27%  Similarity=0.028  Sum_probs=26.4

Q ss_pred             HHHhcCC-cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           10 ILASLGL-WQKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        10 ~l~~v~~-~~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+.+.. .++++++ +|+|++||||||+++.+++
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4555533 5777876 9999999999999999975

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.92  E-value=8.8e-06  Score=62.53  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK   63 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~   63 (109)
                      ++.++++..+...++|+||+|+||||+++++.+.        ..+..+.+.+++
T Consensus        98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--------l~~~~~~i~~~~  143 (543)
T 3m6a_A           98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--------LGRKFVRISLGG  143 (543)
T ss_dssp             HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--------HTCEEEEECCCC
T ss_pred             HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--------cCCCeEEEEecc
Confidence            5667777775445799999999999999999976        555566666555

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.92  E-value=1.4e-05  Score=56.81  Aligned_cols=55  Identities=22%  Similarity=0.463  Sum_probs=33.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccc--cCCcccCceEEEEECCEEEEEEEcCCcc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQHPTSEELSIGKIKFKAFDLGGHQ   75 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~--~~pt~~~~~g~i~~~~~~i~~~d~~g~~   75 (109)
                      +.+++++|.+|+|||||++.|.+.+...  ..|....+...+.++ ..+.++|++|..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~  176 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL  176 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence            3468999999999999999999876432  222111122233443 356678998853

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.89  E-value=2.7e-06  Score=69.82  Aligned_cols=33  Identities=27%  Similarity=0.250  Sum_probs=27.4

Q ss_pred             HHHhcCCcccc-------cEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQKE-------AKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~~~-------~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++++++...+       +++ +|+|||||||||+++++ |.
T Consensus       771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence            46777777765       665 99999999999999999 54

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.89  E-value=4.1e-06  Score=64.71  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=23.4

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..+++.+ +|+|+||||||||+++|++.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHh
Confidence            4556765 99999999999999999976

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.88  E-value=5.1e-06  Score=53.71  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++ ++|+|++|+|||||++++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            444 699999999999999999874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.87  E-value=4.4e-06  Score=60.46  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++..+++++ +++|++|+||||++..|++.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456677777775 99999999999999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.84  E-value=2.9e-06  Score=61.21  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++|+||+|+|||||++++++.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3799999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.84  E-value=9.4e-06  Score=54.77  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999999863

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.84  E-value=5e-06  Score=60.32  Aligned_cols=22  Identities=32%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -++|+|+|||||||++++|.+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3599999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.83  E-value=1.1e-05  Score=53.71  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|+|++||||||+.+.|++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            4799999999999999999873

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.83  E-value=5.3e-06  Score=59.75  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=23.6

Q ss_pred             CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++..+++++ +++|++||||||++..|++.
T Consensus        98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A           98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence            334456665 99999999999999999875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.83  E-value=1.1e-06  Score=70.81  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHH-Hhc
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHM-LKD   42 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~-l~g   42 (109)
                      +|+++++.++.|++ +|+|+||||||||++. |.+
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence            57899999999986 9999999999999996 553

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.83  E-value=1.5e-05  Score=53.25  Aligned_cols=27  Identities=33%  Similarity=0.374  Sum_probs=23.0

Q ss_pred             cccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           17 WQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++. |+|+|++||||||+.+.|.+.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            455566 599999999999999999975

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.82  E-value=5.9e-05  Score=58.75  Aligned_cols=65  Identities=22%  Similarity=0.185  Sum_probs=41.9

Q ss_pred             HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCc-ccCceEEEEE-------CCEEEEEEEcCCcc
Q 033893            9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPT-QHPTSEELSI-------GKIKFKAFDLGGHQ   75 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt-~~~~~g~i~~-------~~~~i~~~d~~g~~   75 (109)
                      .+|..+  ..+..+|+|+|.+|+|||||++.|.|.... ...++ .+...|-..+       ++..+.+.|++|..
T Consensus        29 ~~L~~i--~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           29 KILSAI--TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             HHHHTC--CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             HHHHhc--cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            345554  334456799999999999999999987632 22222 2233333322       45678888998854

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.82  E-value=5.1e-06  Score=59.68  Aligned_cols=28  Identities=14%  Similarity=0.267  Sum_probs=23.7

Q ss_pred             cCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           14 LGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        14 v~~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +++...++-.+|+|+||||||||+.+|.
T Consensus        18 ~~l~~~~g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           18 SLIGFSDRVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred             eEEecCCCcEEEECCCCCcHHHHHHHHH
Confidence            4456667755999999999999999998

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.81  E-value=1.1e-05  Score=53.86  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|+|++||||||+.+.|++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            3699999999999999999864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.81  E-value=6.1e-07  Score=67.64  Aligned_cols=81  Identities=16%  Similarity=0.123  Sum_probs=45.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE---CC-EEEEEEEcCCc--ccccccH--------Hhh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI---GK-IKFKAFDLGGH--QIARRVW--------KDY   84 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~---~~-~~i~~~d~~g~--~~~r~~~--------~~~   84 (109)
                      .+..|+++|++||||||+.+.|+........++..++.+.+..   ++ ....+||..+.  .+.+..|        ..|
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3445799999999999999999854211222222222111100   11 23346787776  3345555        667


Q ss_pred             hhcCCEEEEEEeCCC
Q 033893           85 YAKVIGSFKTKKIEF   99 (109)
Q Consensus        85 ~~~~~~~v~~~~~~~   99 (109)
                      +....+.+++.|-+.
T Consensus       118 l~~~~G~~vV~D~tn  132 (469)
T 1bif_A          118 LSEEGGHVAVFDATN  132 (469)
T ss_dssp             HHTTCCSEEEEESCC
T ss_pred             HHhCCCCEEEEeCCC
Confidence            766666555555543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.77  E-value=2.2e-06  Score=69.87  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      .|+++++.++.|++ +|+|+||||||||++.+.
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            47889999999986 999999999999999853

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.77  E-value=1.5e-05  Score=57.16  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=19.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      +++.|++|+||||+++++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999987

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.77  E-value=9.8e-06  Score=54.78  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ...++-.+|+|+|||||||++.+|.
T Consensus        20 ~f~~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           20 EFKEGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             ECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             EeCCCeEEEEcCCCCCHHHHHHHHH
Confidence            3445556999999999999999885

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.74  E-value=1.7e-05  Score=53.17  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      +++ ++|+|++||||||+.+.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            455 59999999999999999974

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.74  E-value=1.6e-05  Score=53.05  Aligned_cols=21  Identities=19%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||+.+.|.+
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999974

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.72  E-value=1.9e-05  Score=53.09  Aligned_cols=20  Identities=40%  Similarity=0.532  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+||||||||||++.|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            69999999999999999863

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.71  E-value=2.3e-05  Score=53.90  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             HhcCCccc---ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           12 ASLGLWQK---EAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        12 ~~v~~~~~---~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++...   .+. |++.|++||||||+++.|...
T Consensus        14 ~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             ------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            34444443   566 599999999999999999853

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.71  E-value=1.6e-05  Score=57.51  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +...++-.+|+|+|||||||++.+|.
T Consensus        19 i~f~~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           19 VEFKEGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             EcCCCCeEEEECCCCCCHHHHHHHHH
Confidence            33445556999999999999999874

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.69  E-value=0.00028  Score=51.25  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh
Q 033893           21 AKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ..|+|+|.+|+||||+++.|.
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALG  100 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.69  E-value=2.2e-05  Score=50.45  Aligned_cols=21  Identities=29%  Similarity=0.265  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            369999999999999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.68  E-value=1.8e-05  Score=55.46  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++++++ +|+|+||||||||++.+.+.
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            556775 99999999999999998863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.68  E-value=2.7e-05  Score=50.91  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++. |+|+|++||||||+.+.|.+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            455 599999999999999999863

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.66  E-value=6.8e-06  Score=66.81  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHH
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLL   37 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll   37 (109)
                      .|+++++.++.|++ +|+|+||||||||+
T Consensus       599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccccceEEcCCcEEEEEccCCCChhhhH
Confidence            57889999999986 99999999999997

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.66  E-value=1.8e-05  Score=58.88  Aligned_cols=26  Identities=15%  Similarity=0.316  Sum_probs=21.4

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..++. ++|+|+||||||||+.+|.+.
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34445 499999999999999999854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.66  E-value=2.9e-05  Score=51.24  Aligned_cols=30  Identities=30%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             cCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           14 LGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        14 v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++...++. |+|+|++||||||+.+.|+..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            455555555 699999999999999999753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.64  E-value=2.7e-05  Score=59.51  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=26.3

Q ss_pred             HHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.++++..+++ ++|+||+|+|||||++++.+.
T Consensus        56 ~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           56 FHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             TTTTSCCCCSE-EEEECSSSSSHHHHHHHHHHH
T ss_pred             hhhccCCCCce-EEEECCCCCCHHHHHHHHHHH
Confidence            34556666666 999999999999999999865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.64  E-value=3e-05  Score=50.35  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -|+|.|++||||||+.+.|..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            369999999999999999985

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.62  E-value=3.3e-05  Score=58.93  Aligned_cols=29  Identities=28%  Similarity=0.265  Sum_probs=25.5

Q ss_pred             CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +..+.++++ +|+|+||||||||++++.+.
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~  304 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVEN  304 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            456788886 99999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.61  E-value=4.8e-05  Score=50.01  Aligned_cols=27  Identities=30%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             cccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           17 WQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++. |+++|++||||||+.+.|+..
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            344555 599999999999999999753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.60  E-value=3.7e-05  Score=49.17  Aligned_cols=19  Identities=37%  Similarity=0.711  Sum_probs=17.6

Q ss_pred             EEEEeCCCCcHHHHHHHHh
Q 033893           23 ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~   41 (109)
                      |+|.|++||||||+.+.|.
T Consensus         4 I~l~G~~GsGKsT~a~~L~   22 (179)
T 3lw7_A            4 ILITGMPGSGKSEFAKLLK   22 (179)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6999999999999999993

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.59  E-value=2.5e-05  Score=52.54  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++. |+|+|++||||||+.+.|.+.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45566 599999999999999999854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.57  E-value=5.3e-05  Score=51.33  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=23.8

Q ss_pred             HHhc-CCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           11 LASL-GLWQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        11 l~~v-~~~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      |+.+ .-.++++++ +|+|++||||||++..++
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            3444 445778876 999999999999977664

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.57  E-value=4.5e-05  Score=49.34  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            369999999999999999986

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.56  E-value=2.9e-05  Score=60.22  Aligned_cols=35  Identities=14%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.+++..+.++ ++|+|++|+||||++++|.+.
T Consensus        48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~   83 (604)
T 3k1j_A           48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL   83 (604)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred             hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            35566666666666 699999999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.56  E-value=4.1e-05  Score=52.79  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -++|+|++|+||||+++++.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4899999999999999999854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.55  E-value=5.2e-05  Score=49.99  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            379999999999999999985

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.54  E-value=2.2e-05  Score=56.02  Aligned_cols=29  Identities=28%  Similarity=0.228  Sum_probs=23.5

Q ss_pred             hcCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           13 SLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        13 ~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++++.  +++ ++++|++|+||||++..+++.
T Consensus        92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~  121 (295)
T 1ls1_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALY  121 (295)
T ss_dssp             CCCCC--SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             eeecC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34555  555 599999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.53  E-value=0.00013  Score=52.07  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=20.7

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++. |+|+|++||||||+.+.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3444 599999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.53  E-value=5.8e-05  Score=49.26  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|++||||||+.+.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            69999999999999999974

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.52  E-value=6.3e-05  Score=49.16  Aligned_cols=20  Identities=40%  Similarity=0.551  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      .|+|+|++||||||+.+.|+
T Consensus         6 ~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36999999999999999997

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.52  E-value=0.00011  Score=52.20  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.2

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..+. ++|.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3455 59999999999999999974

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.52  E-value=5.6e-05  Score=49.33  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999874

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.50  E-value=4.4e-05  Score=55.80  Aligned_cols=28  Identities=11%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             cCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           14 LGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        14 v~~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ..+...++-.+|+|+|||||||++.+|.
T Consensus        19 ~~i~f~~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           19 SRIKFEKGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEECCSEEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence            3444556667999999999999999885

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.49  E-value=8.3e-05  Score=53.12  Aligned_cols=24  Identities=42%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++ ++++|++||||||++..|++.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            344 599999999999999998753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.49  E-value=7.9e-05  Score=51.63  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=23.5

Q ss_pred             HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      ++.... ..+.+. ++|+|++||||||+.+.|..
T Consensus        22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            333443 344444 59999999999999999975

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.49  E-value=8.1e-05  Score=48.75  Aligned_cols=21  Identities=38%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         7 ~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            7 LIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            369999999999999999874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.48  E-value=6.4e-05  Score=49.90  Aligned_cols=22  Identities=36%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++|++||||||+++.+.+.
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4699999999999999998854

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.48  E-value=6.9e-05  Score=48.76  Aligned_cols=21  Identities=38%  Similarity=0.700  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||+.+.|+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            479999999999999999975

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.45  E-value=3.2e-05  Score=51.59  Aligned_cols=20  Identities=45%  Similarity=0.634  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|++||||||+++.|..
T Consensus         3 I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999974

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.44  E-value=8.8e-05  Score=48.48  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||+.+.|+.
T Consensus         7 ~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999974

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.42  E-value=1.7e-05  Score=60.42  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=25.9

Q ss_pred             HHhcCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ++++++...++-.+|+|+||||||||+.+|.
T Consensus        51 ~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~   81 (517)
T 4ad8_A           51 ITQLELELGGGFCAFTGETGAGKSIIVDALG   81 (517)
T ss_dssp             BSCEEEECCCSEEEEEESHHHHHHHHTHHHH
T ss_pred             eeeEEEecCCCeEEEEcCCCCCHHHHHHHHH
Confidence            4556677777856999999999999999985

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.42  E-value=0.00012  Score=48.29  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +..|+|.|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            345799999999999999999854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.41  E-value=9.7e-05  Score=49.48  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      +|+|.|++||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999996

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.41  E-value=9.2e-05  Score=55.09  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      -++++++ +|+|++|||||||++.+.
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            4667776 999999999999999664

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.41  E-value=0.0011  Score=51.15  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHh---cC---------------cccccCC-------cccCceEEEEECCEEEEEEEcCC
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLK---DE---------------RLVQHQP-------TQHPTSEELSIGKIKFKAFDLGG   73 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~---g~---------------~~~~~~p-------t~~~~~g~i~~~~~~i~~~d~~g   73 (109)
                      +-| |+|+|..++|||||.-+|.   |.               ...++.+       |+....-++.++++.+++.|.+|
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            345 7999999999999999884   11               0111111       33344567888999999999999


Q ss_pred             cccccccHHhhhhcCCEEEEEEeC
Q 033893           74 HQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      ..++..--..-.+-+|++|++.+-
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda  133 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDA  133 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEET
T ss_pred             cHHHHHHHHHHHHhcCceEEEeec
Confidence            988877667778899999888774

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.41  E-value=0.00011  Score=48.65  Aligned_cols=21  Identities=43%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            469999999999999999985

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.41  E-value=9.3e-05  Score=48.28  Aligned_cols=21  Identities=43%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus        13 ~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHH
Confidence            479999999999999999983

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.40  E-value=0.00011  Score=53.89  Aligned_cols=55  Identities=18%  Similarity=0.307  Sum_probs=34.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC-----cc--cccCCcccCceEEEEECCEEEEEEEcCCcc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE-----RL--VQHQPTQHPTSEELSIGKIKFKAFDLGGHQ   75 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~-----~~--~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~   75 (109)
                      ..+++++|.+|+|||||++.|.+.     +.  ....|....+...+.++. .+.+.|++|-.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~  223 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGII  223 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCC
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcC
Confidence            456899999999999999999875     21  122232222223333332 25667988843

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.40  E-value=8.6e-05  Score=51.62  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      ++|+|++||||||+.+.|+.
T Consensus         4 i~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999999874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.38  E-value=0.00014  Score=55.19  Aligned_cols=31  Identities=29%  Similarity=0.446  Sum_probs=24.3

Q ss_pred             HhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        12 ~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++++..+.+ ++|+||+|+|||++++++.+.
T Consensus        42 ~~~g~~~p~g-vLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           42 NRIGARMPKG-ILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             HTTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             hhcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence            3445444444 899999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.38  E-value=0.00011  Score=49.23  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      +|+|+|++||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999996

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.37  E-value=5.4e-05  Score=54.36  Aligned_cols=21  Identities=38%  Similarity=0.602  Sum_probs=19.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++.||+|+||||+++++++.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            699999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.36  E-value=0.00014  Score=48.06  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|.|++||||||+.+.|...
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4699999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.36  E-value=0.00011  Score=49.34  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|.|++||||||+.+.|...
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~l   27 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFADL   27 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHc
Confidence            4699999999999999999863

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.35  E-value=0.00016  Score=47.47  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus        11 ~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           11 IIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999973

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.34  E-value=0.00016  Score=48.11  Aligned_cols=21  Identities=43%  Similarity=0.665  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus        12 ~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           12 FIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            469999999999999999974

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.34  E-value=0.00015  Score=47.38  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999998863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.34  E-value=0.00017  Score=52.91  Aligned_cols=24  Identities=25%  Similarity=0.504  Sum_probs=21.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..+++++|.+|+|||||++.|.+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhh
Confidence            456899999999999999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.32  E-value=0.00015  Score=46.51  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999975

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.32  E-value=0.00017  Score=47.91  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus        11 ~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           11 LIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999984

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.31  E-value=0.00017  Score=48.84  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -.|+|+|++||||||+.+.|+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4579999999999999999973

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.30  E-value=0.00016  Score=47.55  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999974

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.29  E-value=0.00022  Score=47.74  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ....++|.|++|+||||+++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344579999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.29  E-value=0.00021  Score=47.37  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -.|+|+|++||||||+.+.|+.
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.29  E-value=0.00015  Score=47.33  Aligned_cols=20  Identities=45%  Similarity=0.640  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|++||||||+.+.|..
T Consensus         3 I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999975

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.29  E-value=0.00016  Score=48.84  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||+.+.|+.
T Consensus         7 ~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            7 KVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999973

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.29  E-value=0.00018  Score=48.31  Aligned_cols=25  Identities=32%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDER   44 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~   44 (109)
                      ..+|+++|.+|||||||++.+....
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3567999999999999999998653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.29  E-value=0.00018  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|.|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.29  E-value=0.00016  Score=46.59  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999999974

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.26  E-value=0.00018  Score=46.84  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999873

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.26  E-value=0.00019  Score=48.98  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..|+|+|++||||||+.+.|++
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999999985

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.25  E-value=0.00021  Score=47.79  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..++++|..|||||||++.+.+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            35799999999999999999854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.24  E-value=0.00044  Score=44.35  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            345799999999999999988753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.23  E-value=0.00016  Score=53.20  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=26.4

Q ss_pred             HHHHhcCCccccc---EEEEEeCCCCcHHHHHHHHhcC
Q 033893            9 GILASLGLWQKEA---KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus         9 ~~l~~v~~~~~~~---~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.+++.++++   .++|+|++||||||+.++|++.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            3566666555443   3799999999999999988753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.23  E-value=0.00024  Score=47.86  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -.|+|+|++||||||+.+.|+.
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.21  E-value=0.00024  Score=49.30  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh
Q 033893           21 AKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ..++|.|++||||||+.+.|+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999997

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.20  E-value=0.00025  Score=48.85  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +-.|+|.|++||||||+.+.|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34579999999999999999973

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.18  E-value=0.00023  Score=46.44  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||+.+.|+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.16  E-value=0.00027  Score=47.95  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.16  E-value=0.00017  Score=46.86  Aligned_cols=21  Identities=33%  Similarity=0.346  Sum_probs=14.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         7 ~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            7 IIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             EEEEECCC----CHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999973

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.16  E-value=0.00033  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..++|.|++|+||||+++.+.+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34799999999999999998853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.15  E-value=0.00036  Score=46.19  Aligned_cols=20  Identities=40%  Similarity=0.370  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      .|+|.|++||||||+.+.|.
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36999999999999999887

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.15  E-value=0.00025  Score=49.29  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         6 lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            6 LIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            369999999999999999874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.14  E-value=0.00026  Score=46.86  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++++|++||||||++..|..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999998874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.11  E-value=0.00028  Score=46.66  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999975

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.10  E-value=0.00043  Score=49.70  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++|.|++|+||||+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999999854

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.10  E-value=0.00021  Score=53.60  Aligned_cols=28  Identities=29%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             cCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           14 LGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        14 v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++.  +++ ++++|++||||||++..|++.
T Consensus        93 i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             CCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4444  455 589999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.09  E-value=0.00034  Score=45.06  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -|+|.|..||||||+.+.|+.
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999974

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.08  E-value=0.00039  Score=46.85  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||+.+.|+.
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999974

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.07  E-value=0.0011  Score=43.80  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .-+.|.|++|+|||++++++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4579999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.06  E-value=0.00045  Score=47.02  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +.-.|+|+|++||||||+.+.|+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            334689999999999999999974

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.04  E-value=0.00059  Score=43.76  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            345799999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.04  E-value=0.00037  Score=48.92  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            369999999999999999985

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.03  E-value=0.0001  Score=59.54  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH   38 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~   38 (109)
                      +.|++|+.+++.+++ ++.|.||||||||..
T Consensus        24 hNLkni~v~iP~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           24 HNLKDISVKVPRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             TTCCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred             cCCCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence            468899999999996 999999999999985

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.99  E-value=0.00061  Score=46.69  Aligned_cols=26  Identities=31%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      ..++.+| +|+|++||||+|..+.|+.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3455676 8999999999999998874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.99  E-value=0.00046  Score=48.29  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++|.|++|+||||+.+++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345799999999999999999854

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.99  E-value=0.00047  Score=50.61  Aligned_cols=27  Identities=30%  Similarity=0.317  Sum_probs=22.8

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      -++++++ .|.|++|||||||+..+...
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3667886 99999999999999988743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.98  E-value=0.00018  Score=51.25  Aligned_cols=68  Identities=6%  Similarity=-0.140  Sum_probs=49.8

Q ss_pred             HHHHHHhcCcc--cccCCcccCceEEEEEC-CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc-cccc
Q 033893           35 TLLHMLKDERL--VQHQPTQHPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD-FYEV  105 (109)
Q Consensus        35 Tll~~l~g~~~--~~~~pt~~~~~g~i~~~-~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~-~~~~  105 (109)
                      ++++++....|  ..+.||++.... +.+. +..+.+||+  +++++.+++.||+++|+++.++|++... ++..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~  103 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI  103 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence            36666665566  457799885443 3332 236789999  8899999999999999999999998664 4443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.97  E-value=0.00069  Score=47.04  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .-++|.|++|+|||++.++++..
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999999854

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.96  E-value=0.00051  Score=48.64  Aligned_cols=25  Identities=36%  Similarity=0.593  Sum_probs=21.1

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +..+ ++|.|++|+|||++.+++.+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            3444 799999999999999999864

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.95  E-value=0.00015  Score=59.00  Aligned_cols=30  Identities=17%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH   38 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~   38 (109)
                      +.|++|+.++++.++ ++.|+||||||||.-
T Consensus        12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLaf   42 (916)
T 3pih_A           12 HNLKNITVRIPKNRLVVITGVSGSGKSSLAM   42 (916)
T ss_dssp             TTCCSBCCEEETTSEEEEEESTTSSSHHHHT
T ss_pred             cccCcceeccCCCcEEEEECCCCCcHHHHHH
Confidence            568999999999996 999999999999974

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.95  E-value=0.00062  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus        77 iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999983

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.94  E-value=0.00043  Score=49.44  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             cCCcccccE-EEEEeCCCCcHHHHHHHHh
Q 033893           14 LGLWQKEAK-ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        14 v~~~~~~~~-i~lvG~~GsGKSTll~~l~   41 (109)
                      +++..+ ++ ++++|++|+||||++..++
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la  119 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLA  119 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHH
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHH
Confidence            445544 55 4999999999999999887

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.91  E-value=0.00065  Score=46.82  Aligned_cols=21  Identities=19%  Similarity=0.183  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|.|++||||||+.+.|..
T Consensus        24 iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999975

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.90  E-value=0.00034  Score=48.27  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      ++|.|++|+|||++.+++..
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999985

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=96.89  E-value=0.0006  Score=47.12  Aligned_cols=32  Identities=13%  Similarity=-0.041  Sum_probs=21.1

Q ss_pred             cCCcccccccHHhhhhcCCEEEEEEeCCCccc
Q 033893           71 LGGHQIARRVWKDYYAKVIGSFKTKKIEFRDF  102 (109)
Q Consensus        71 ~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~~  102 (109)
                      .+||+++|.+|++||.+++++|.+.|-+...+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R  140 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR  140 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCC
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhH
Confidence            45899999999999999999999998765543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.88  E-value=0.0009  Score=47.85  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..++|.|++|+||||+++.+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3479999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.88  E-value=0.00063  Score=45.59  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|.|..||||||+.+.|+..
T Consensus        14 iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3699999999999999999853

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.87  E-value=0.001  Score=44.01  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -++|.|++|+||||+++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            469999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.86  E-value=0.00074  Score=45.78  Aligned_cols=20  Identities=40%  Similarity=0.557  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+||+||||+|..+.|+.
T Consensus         3 Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.85  E-value=0.00069  Score=50.34  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+|++||||||+.+.|..
T Consensus       261 Iil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          261 VVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             EEEESCTTSSHHHHHHHHTG
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            59999999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.84  E-value=0.00073  Score=47.34  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.+++.|++|+|||++.+++...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            35799999999999999999854

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.83  E-value=0.00025  Score=57.99  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=26.7

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH   38 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~   38 (109)
                      +.|++|+.+++..++ ++.|+||||||||.-
T Consensus        32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf   62 (972)
T 2r6f_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAF   62 (972)
T ss_dssp             SSCCSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred             ccCCceeeeccCCcEEEEECCCCCCHHHHHH
Confidence            458899999999996 999999999999964

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.83  E-value=0.00074  Score=49.53  Aligned_cols=23  Identities=39%  Similarity=0.719  Sum_probs=20.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +..+++|+|.+||||||+++.+.
T Consensus        32 ~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHHH
Confidence            34578999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.82  E-value=0.00063  Score=48.31  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -++|.|++|+||||+++++...
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4799999999999999999853

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.80  E-value=0.0016  Score=46.69  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++|.|++|+||||+++.+...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            345799999999999999999853

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.78  E-value=0.0054  Score=46.29  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +-|+|+|+.++||||||+.|.|
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhh
Confidence            3459999999999999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.76  E-value=0.0009  Score=50.11  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=26.0

Q ss_pred             HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      |+++....+++++ +|.|++|+||||++..++..
T Consensus       193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4455445777875 99999999999999988753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.76  E-value=0.0011  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            369999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.75  E-value=0.0011  Score=45.30  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -++|.|++|+|||++.+++..
T Consensus        41 ~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999974

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.72  E-value=0.00093  Score=48.85  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=20.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++|+|++||||||+++.+...
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHH
Confidence            445799999999999999999865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.001  Score=43.56  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++|.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.69  E-value=0.0019  Score=45.80  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=19.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++.|++|+||||+++++...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.69  E-value=0.0011  Score=48.54  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ..+..+++|+|..+|||||+++.+.
T Consensus         6 ~~~~~k~lllG~~~sGKsT~~kq~~   30 (354)
T 2xtz_A            6 GIHIRKLLLLGAGESGKSTIFKQIK   30 (354)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceeEEEECCCCCcHHHHHHHHH
Confidence            3456689999999999999999886

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.68  E-value=0.00091  Score=48.76  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      -++++++ .|.|++|+|||||+..+.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la   82 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAV   82 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHH
Confidence            4567775 999999999999988776

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.66  E-value=0.0012  Score=49.63  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             cE-EEEEeCCCCcHHHHHHHHh
Q 033893           21 AK-ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~-i~lvG~~GsGKSTll~~l~   41 (109)
                      .+ ++++|++||||||++..|+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            45 5999999999999999887

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.65  E-value=0.0019  Score=45.21  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++|.|++|+|||++.++++.
T Consensus        69 ~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.64  E-value=0.0011  Score=48.39  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -|+|+|++||||||+.+.|+.
T Consensus         9 lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHH
Confidence            369999999999999998874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.64  E-value=0.0013  Score=41.67  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..-|.|.|++|+|||++.+.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            345899999999999999999854

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.62  E-value=0.00078  Score=46.63  Aligned_cols=22  Identities=41%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|.|++||||||+.+.|...
T Consensus        26 ~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           26 KISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3699999999999999998853

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.62  E-value=0.0012  Score=47.85  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|+|++||||||+.+.|+..
T Consensus         7 ~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3699999999999999998843

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.61  E-value=0.0015  Score=44.40  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             cE-EEEEeCCCCcHHHHHHHHhc
Q 033893           21 AK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      +. |++.|++||||||+.+.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            45 59999999999999999863

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.61  E-value=0.0011  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .-++|.|++|+|||||++++.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34799999999999999999853

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.59  E-value=0.0011  Score=49.67  Aligned_cols=30  Identities=27%  Similarity=0.259  Sum_probs=24.0

Q ss_pred             cCCccccc-EEEEEeCCCCcHHHHHHHHhcC
Q 033893           14 LGLWQKEA-KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        14 v~~~~~~~-~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.+++.+| +++|+|++|+|||||++.|...
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            33666555 6799999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.59  E-value=0.0015  Score=45.23  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...++|.|++|+|||++.+++...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            345799999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-13
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-12
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-12
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-11
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-10
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-10
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-10
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-10
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-10
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-10
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-09
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-07
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-06
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-06
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-06
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-05
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-05
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-04
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-04
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-04
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-04
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	0.001
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	0.001
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	0.002
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	0.003
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	0.003
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	0.004

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.8 bits (144), Expect = 7e-13
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 16  LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQ 75
           +++   ++L LG   +GK+T++  ++         T      +  + K+ F  FD+GG +
Sbjct: 2   VYRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58

Query: 76  IARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
             RR W   +  V            +    E   
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 92

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 57.7 bits (138), Expect = 3e-12
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 6  WFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65
           F  +   L    KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS   +K
Sbjct: 3  IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLK 62

Query: 66 FKAFDLGGHQIARRVWKDYY 85
             +DLGG    R  W+ YY
Sbjct: 63 LNVWDLGGQTSIRPYWRCYY 82

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 57.8 bits (138), Expect = 3e-12
 Identities = 53/100 (53%), Positives = 64/100 (64%)

Query: 10  ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69
           +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  F
Sbjct: 3   VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 62

Query: 70  DLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           DLGGH  ARRVWK+Y   + G          +        
Sbjct: 63  DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 102

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-11
 Identities = 27/88 (30%), Positives = 39/88 (44%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 82  KDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           + Y+    G         R+        
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERVNEAREE 89

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-10
 Identities = 34/101 (33%), Positives = 47/101 (46%)

Query: 9   GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68
           G + S     KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  
Sbjct: 1   GKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV 60

Query: 69  FDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           +D+GG    R +W+ YY    G         RD  +     
Sbjct: 61  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE 101

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-10
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 2  FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61
           LF   + +        +E K++ +GLDNAGKTT+L+      +V   PT     EE+ I
Sbjct: 2  ILFTRIWRLF-----NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI 56

Query: 62 GKIKFKAFDLGGHQIARRVWKDYY 85
             +F  +D+GG +  R  W  YY
Sbjct: 57 NNTRFLMWDIGGQESLRSSWNTYY 80

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (126), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E K+L LG   +GK+T +  ++        PT         +  + F+  D+GG +  R
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59

Query: 79  RVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           R W   +  V        +   D   VE   
Sbjct: 60  RKWIHCFENVTSIMFLVALSEYDQVLVESDN 90

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (126), Expect = 2e-10
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +  KIL LG   +GK+T L  ++   +    PT+     +  I  + FK  D+GG +  R
Sbjct: 1  RLVKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 79 RVWKDYYAKVIG 90
          + W + +  V  
Sbjct: 59 KRWFECFDSVTS 70

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 5e-10
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E ++L LGLDNAGKTT+L     E +    PT     + L     K   +D+GG +  R
Sbjct: 1  RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60

Query: 79 RVWKDYY 85
            W++Y+
Sbjct: 61 SYWRNYF 67

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 5e-10
 Identities = 51/88 (57%), Positives = 61/88 (69%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+W
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 82  KDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           KDY+ +V G          + ++     
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVE 89

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 2e-09
 Identities = 29/92 (31%), Positives = 40/92 (43%)

Query: 18  QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73

Query: 78  RRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           R  W+ Y+              R  +E     
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQE 105

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.0 bits (118), Expect = 2e-09
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
           +E K+L LG   +GK+T++  +K      H+          +   + FK FD+GG +  R
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56

Query: 79  RVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           + W   +  V        +   D    E   
Sbjct: 57  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 87

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (108), Expect = 6e-08
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE----ELSIGKIKFKAFDLGGHQI 76
          KIL +G    GK+ LL    +++       T     +    +++  K+K + +D  G + 
Sbjct: 4  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 77 ARRVWKDYY 85
           R +   YY
Sbjct: 64 FRTITTAYY 72

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-07
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
          +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R
Sbjct: 4  REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63

Query: 79 RVWKDYY 85
            W+ YY
Sbjct: 64 PYWRCYY 70

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQ----HPTSEELSIGKIKFKAFDLGGHQI 76
           K+L +G    GK+ LL    D+     +  T        + EL    +K + +D  G + 
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 77  ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
            R +   YY    G      +  ++ +     W
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 100

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 9e-07
 Identities = 12/63 (19%), Positives = 23/63 (36%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
           +LF+GL ++GKT L   L   +    Q +   +S    +   +  +  L        + 
Sbjct: 2  AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 82 KDY 84
             
Sbjct: 62 FQL 64

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPT---------------QHPTSEELSIGKIKF 66
          K+L LG    GKTT L+   D +      T               Q P        K+  
Sbjct: 7  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 67 KAFDLGGHQIARRVWKDYY 85
          + +D  G +  R +   ++
Sbjct: 67 QLWDTAGQERFRSLTTAFF 85

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFKAFDLGGHQI 76
          KI+ +G    GKT L+           Q           + E++  K+K + +D  G + 
Sbjct: 7  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 77 ARRVWKDYYAKVIGSFKTKKI 97
           R + + YY        T  I
Sbjct: 67 FRSITQSYYRSANALILTYDI 87

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
           +E ++  +GL  +GKTT ++++   +  +   PT      +++ G +  K +D+GG    
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 78  RRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           R +W+ Y   V           ++  E     
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNE 92

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-06
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQHPTSEELSIGKIKFKAFDLGGHQI 76
          KIL +G    GK++LL    D+                 +  +   K K   +D  G + 
Sbjct: 9  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 77 ARRVWKDYYAKVIG 90
           R +   YY    G
Sbjct: 69 FRTLTPSYYRGAQG 82

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE-----ELSIGKIKFKAFDLGGHQI 76
          KIL +G  + GKT+ L    D+       +             +  +IK + +D  G + 
Sbjct: 7  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 77 ARRVWKDYY 85
           R +   YY
Sbjct: 67 YRTITTAYY 75

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 4e-06
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79
          +  I+  G  N+GKT+LL +L  +  V+                      D  GH   R 
Sbjct: 3  QPSIIIAGPQNSGKTSLLTLLTTDS-VRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 80 VWKDYY 85
             DY 
Sbjct: 62 KLSDYL 67

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS-----EELSIGKIKFKAFDLGGHQI 76
           K L +G    GK+ LLH   +++                   +    +K + +D  G + 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 77  ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
            R V + YY    G+     I  R+ Y     W
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNW 99

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQ---HQPTQHPTSEELSIG--KIKFKAFDLGGHQI 76
          K+L +G    GKT +L    ++                  + +   +IK + +D  G + 
Sbjct: 8  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 77 ARRVWKDYY 85
           R +   YY
Sbjct: 68 FRTITTAYY 76

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QHPTSEELSIGKIKFKAFDLGGHQI 76
           K + +G    GK+ LL    D+R                   +   +IK + +D  G + 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 77  ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
            R + + YY    G+     I  R+ +     W
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSW 97

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI------GKIKFKAFDLGGHQ 75
          K++ +G    GKT LL   KD   +          +  +        K+K + +D  G +
Sbjct: 8  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 76 IARRVWKDYY 85
            R V   YY
Sbjct: 68 RFRSVTHAYY 77

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 6/94 (6%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL------GGHQ 75
           KI+ +G  N GKT L +     R                   I  +   +      G  +
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 76  IARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
             + + + YY  V        +     +     W
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 97

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 22  KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QHPTSEELSIGKIKFKAFDLGGHQI 76
           K + +G    GK+ LLH   +++ +   P            E+S  KIK + +D  G + 
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 77  ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
            R V + YY    G+     I  R  Y     W
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 98

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ----HPTSEELSIGKIKFKAFDLGGH 74
          +E K++ LG    GK+ L         ++         +    E+       +  D  G 
Sbjct: 2  REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 75 QIARRVWKDYY 85
          +    +   Y 
Sbjct: 62 EQFASMRDLYI 72

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-----TQHPTSEELSIGKIKFKAFDLGG 73
           +E K+  LG    GK++++    ++    +       +    + +      KF  +D  G
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 74  HQIARRVWKDYYAKVIGSFKTKKIEFRD-FYEVEIFW 109
            +  R +   YY     +     I   + F  ++ + 
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV 99

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI-----KFKAFDLGGHQI 76
          K++ +G    GK+ LL             +           ++     K + +D  G + 
Sbjct: 6  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 77 ARRVWKDYYAKVIG 90
           RR+   YY   +G
Sbjct: 66 YRRITSAYYRGAVG 79

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPT-----QHPTSEELSIGKIKFKAFDLGGHQI 76
          K++ LG    GK++L+      +  + Q +         +  L    +KF+ +D  G + 
Sbjct: 8  KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 77 ARRVWKDYY 85
             +   YY
Sbjct: 68 YHSLAPMYY 76

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (74), Expect = 0.003
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL-----GGHQI 76
          K++ +G    GK++++         +               ++  +   L      G + 
Sbjct: 4  KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 77 ARRVWKDYY 85
             + K YY
Sbjct: 64 FDAITKAYY 72

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 4/95 (4%)

Query: 19  KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPT----QHPTSEELSIGKIKFKAFDLGGH 74
            E K++ +G    GK+ L   L     V          +     +          D  G 
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 75  QIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
           +    +   Y     G      I     +E    +
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.7 bits (73), Expect = 0.004
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQH 53
          K++ LG    GKT+L+H   +++  Q      
Sbjct: 4  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATI 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.71
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.7
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.7
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.68
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.67
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.66
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.66
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.63
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.63
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.61
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.61
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.6
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.6
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.6
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.58
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.58
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.56
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.55
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.54
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.53
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.53
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.51
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.5
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.49
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.49
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.49
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.48
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.48
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.48
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.46
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.45
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.44
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.44
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.43
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.43
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.42
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.42
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.42
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.41
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.4
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.36
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.35
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.35
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.34
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.32
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.29
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.26
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.25
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.25
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.19
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.12
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.12
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.09
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.94
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.81
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.78
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.77
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.52
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.51
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.49
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.31
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.29
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.25
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.24
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.23
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.23
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.1
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.1
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.09
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.06
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.06
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.03
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.0
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.96
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.95
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.93
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.91
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.9
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.9
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.9
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.88
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.87
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.85
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.84
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.84
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.82
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.81
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.8
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.73
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.73
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.72
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.71
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.71
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.69
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.69
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.68
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.65
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.65
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.64
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.63
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.63
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.62
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.61
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.6
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.59
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.57
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.57
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.57
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.55
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.55
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.55
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.52
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.52
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.51
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.48
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.45
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.4
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.39
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.38
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.35
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.34
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.34
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.34
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.31
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.3
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.29
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.29
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.25
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.25
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.25
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.24
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.21
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.19
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.19
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.17
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.16
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.16
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.12
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.12
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.11
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.09
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.09
d1okkd2	207	GTPase domain of the signal recognition particle r	97.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.06
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.05
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.04
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.03
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.02
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.01
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.01
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.98
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.98
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.96
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.91
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.88
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.86
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.86
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.83
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.83
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.81
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.8
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.76
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.74
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.74
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.71
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.71
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.69
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.67
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.63
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.56
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.51
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.5
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.45
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.38
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.38
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.31
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.29
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.26
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.25
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.23
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.19
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.15
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.03
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.99
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.97
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.95
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.93
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.8
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.64
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.6
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.58
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.56
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.54
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.54
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.52
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.49
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.47
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.43
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.41
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.29
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.18
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.05
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.02
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.02
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.61
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.24
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.12
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	93.6
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	93.58
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.53
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.27
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.09
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.9
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.69
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.59
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.46
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.16
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.14
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.77
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.21
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.97
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.56
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.23
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.16
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.96
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	87.82
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.45
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.98
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.56
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	86.46
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.52
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	84.14
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.11
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	83.59
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	83.29
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	83.27
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	82.52
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	81.75
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	80.93
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	80.24

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.71  E-value=1.2e-17  Score=109.67  Aligned_cols=99  Identities=34%  Similarity=0.471  Sum_probs=82.1

Q ss_pred             HHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893            7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA   86 (109)
Q Consensus         7 ~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~   86 (109)
                      +..+++.+-...++.+|+++|++|||||||++++.+..+.+..||.+.....+..++..+.+||++|++.++..|+.|+.
T Consensus         4 ~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (182)
T d1moza_           4 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYA   83 (182)
T ss_dssp             HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTT
T ss_pred             HHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhc
Confidence            44566676445667789999999999999999999888888889998888888899999999999999999999999999


Q ss_pred             cCCEEEEEEeCCCcccccc
Q 033893           87 KVIGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~~  105 (109)
                      ++++++.+++.+...++..
T Consensus        84 ~~~~ii~v~d~~d~~s~~~  102 (182)
T d1moza_          84 DTAAVIFVVDSTDKDRMST  102 (182)
T ss_dssp             TEEEEEEEEETTCTTTHHH
T ss_pred             cceeEEEEeeecccccchh
Confidence            9999999999877665543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.70  E-value=2.3e-17  Score=106.91  Aligned_cols=86  Identities=22%  Similarity=0.411  Sum_probs=77.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +-+|+++|++|+|||||++++.+.++ .+..||.+++...+..+++.+.+||++|++.++..|+.|+.++++++.+++.+
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence            45789999999999999999998877 56789999888889999999999999999999999999999999999999988


Q ss_pred             Ccccccc
Q 033893           99 FRDFYEV  105 (109)
Q Consensus        99 ~~~~~~~  105 (109)
                      ...+++.
T Consensus        82 ~~~~~~~   88 (164)
T d1zd9a1          82 DQEKIEA   88 (164)
T ss_dssp             CGGGHHH
T ss_pred             cccccch
Confidence            7665543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.70  E-value=2.5e-17  Score=106.44  Aligned_cols=85  Identities=31%  Similarity=0.492  Sum_probs=77.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      +-+|+++|++|||||||++.|.+..+.+..||.+....++..++..+.+||++|++.++..|+.+++.+++++.+++.+.
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d   81 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD   81 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeeccc
Confidence            45799999999999999999999888889999998888999999999999999999999999999999999999999876


Q ss_pred             ccccc
Q 033893          100 RDFYE  104 (109)
Q Consensus       100 ~~~~~  104 (109)
                      ..++.
T Consensus        82 ~~~~~   86 (165)
T d1ksha_          82 RQRMQ   86 (165)
T ss_dssp             GGGHH
T ss_pred             chhHH
Confidence            65443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.68  E-value=6.6e-17  Score=105.29  Aligned_cols=96  Identities=33%  Similarity=0.486  Sum_probs=82.5

Q ss_pred             HHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893           10 ILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV   88 (109)
Q Consensus        10 ~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~   88 (109)
                      +++.+.-+ .++.+|+++|++|||||||++++.+.++.+..|+.+++..++..+++.+.+||.++++.++..|+.|+..+
T Consensus         5 ~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   84 (176)
T d1fzqa_           5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT   84 (176)
T ss_dssp             HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             HHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhcc
Confidence            44555333 34568999999999999999999998887777888888889999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCcccccc
Q 033893           89 IGSFKTKKIEFRDFYEV  105 (109)
Q Consensus        89 ~~~v~~~~~~~~~~~~~  105 (109)
                      ++++.+++.+...++..
T Consensus        85 ~~ii~v~d~~d~~s~~~  101 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEE  101 (176)
T ss_dssp             SEEEEEEETTCGGGHHH
T ss_pred             ceeEEeeccccccchhh
Confidence            99999999987666543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.6e-16  Score=104.10  Aligned_cols=86  Identities=23%  Similarity=0.385  Sum_probs=73.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ++.+|+++|..|+|||||++++....+    ||.++....+...+..+.+||++|+++++.+|+.||+.+++++.+++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            356899999999999999999975533    4566666778888999999999999999999999999999999999998


Q ss_pred             CccccccccC
Q 033893           99 FRDFYEVEIF  108 (109)
Q Consensus        99 ~~~~~~~~~~  108 (109)
                      ...++..+..
T Consensus        77 ~~~~~~~~~~   86 (195)
T d1svsa1          77 DYDLVLAEDE   86 (195)
T ss_dssp             GGGCBCSSCT
T ss_pred             ccchHHHHhh
Confidence            8877765443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.2e-16  Score=103.79  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=75.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ++.+|+++|++|+|||||++++....+ .+.||++++..++......+.+||++|++..+..|..||+.+++++.+++.+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            356899999999999999999987766 4679999998899999999999999999999999999999999999999986


Q ss_pred             Ccccc
Q 033893           99 FRDFY  103 (109)
Q Consensus        99 ~~~~~  103 (109)
                      ....+
T Consensus        80 ~~~~~   84 (200)
T d2bcjq2          80 EYDQV   84 (200)
T ss_dssp             GGGCB
T ss_pred             chhhh
Confidence            66543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.66  E-value=9.1e-17  Score=104.79  Aligned_cols=90  Identities=36%  Similarity=0.529  Sum_probs=79.6

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      |..++.+|+++|++|||||||++++....+.+..||.++...........+.+||++|++..+..|+.++.++++++.++
T Consensus         8 ~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~   87 (173)
T d1e0sa_           8 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   87 (173)
T ss_dssp             HTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEE
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEE
Confidence            35567789999999999999999999887777778888888888888899999999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      |.+...++..
T Consensus        88 D~s~~~~~~~   97 (173)
T d1e0sa_          88 DCADRDRIDE   97 (173)
T ss_dssp             ETTCGGGHHH
T ss_pred             ecccchhHHH
Confidence            9987766554

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.3e-16  Score=102.43  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +.+|+++|.+|+|||||++++.+..+ ..+.||.+.. .-.+..++  ..+.+||.+|++.++.+++.|+++++++++++
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            35789999999999999999998877 4577876532 23345555  57889999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      |++...+++...
T Consensus        82 d~~~~~Sf~~~~   93 (177)
T d1kmqa_          82 SIDSPDSLENIP   93 (177)
T ss_dssp             ETTCHHHHHHHH
T ss_pred             ccchhHHHHHHH
Confidence            999888776533

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.4e-16  Score=102.52  Aligned_cols=87  Identities=14%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +|+++|.+|+|||||++.+.+.++....|+.... ..++.+++  +.+.+||.+|+++++.+++.|+++++++++++|++
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t   82 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT   82 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETT
T ss_pred             EEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecccc
Confidence            6899999999999999999988776555555432 34567776  57778999999999999999999999999999999


Q ss_pred             CccccccccC
Q 033893           99 FRDFYEVEIF  108 (109)
Q Consensus        99 ~~~~~~~~~~  108 (109)
                      ...+++....
T Consensus        83 ~~~s~~~~~~   92 (168)
T d2gjsa1          83 DKGSFEKASE   92 (168)
T ss_dssp             CHHHHHHHHH
T ss_pred             cccccccccc
Confidence            8887776443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.1e-16  Score=102.31  Aligned_cols=85  Identities=21%  Similarity=0.328  Sum_probs=66.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|.+|+|||||++.+...++ .++.||.+.+.  -++.+++  ..+.+||++|+++++.+|+.|++++++++.+++
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   83 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYD   83 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998776 55678877554  3455555  567789999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      .+...+++..
T Consensus        84 ~~~~~s~~~~   93 (166)
T d1g16a_          84 ITDERTFTNI   93 (166)
T ss_dssp             TTCHHHHHTH
T ss_pred             CCCccCHHHH
Confidence            9887766553

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.4e-16  Score=100.86  Aligned_cols=87  Identities=20%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++.+.+.++ ....|+.+.  ...++.+++  +.+.+||++|+++++.+|+.|++++++++.++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~   85 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTY   85 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEee
Confidence            4799999999999999999998876 445565543  345566666  56778999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +++...+++...
T Consensus        86 d~~~~~s~~~~~   97 (171)
T d2ew1a1          86 DITCEESFRCLP   97 (171)
T ss_dssp             ETTCHHHHHTHH
T ss_pred             ecccchhhhhhh
Confidence            998877766543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=9.7e-16  Score=103.99  Aligned_cols=84  Identities=20%  Similarity=0.363  Sum_probs=73.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +..+|+|+|++|||||||++.+...   +..||.++...++.+++..+..||++|++..|..|..|+.++++++.+++.+
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~---~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s   81 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS   81 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHH---HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcC---CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence            3468999999999999999999744   4568999988889999999999999999999999999999999999999987


Q ss_pred             Ccccccc
Q 033893           99 FRDFYEV  105 (109)
Q Consensus        99 ~~~~~~~  105 (109)
                      ....+..
T Consensus        82 ~~~~~~~   88 (221)
T d1azta2          82 SYNMVIR   88 (221)
T ss_dssp             GGGCBCT
T ss_pred             ccccccc
Confidence            6654443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.7e-16  Score=101.84  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      -+|+|+|.+|+|||||++++....+ +++.||..... ..+..++  +.+.+||++|++.++.++..|++++++++.++|
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d   89 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   89 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccc
Confidence            4789999999999999999998776 56788876433 3445555  677899999999999999999999999999999


Q ss_pred             CCCccccccc
Q 033893           97 IEFRDFYEVE  106 (109)
Q Consensus        97 ~~~~~~~~~~  106 (109)
                      ++...+++..
T Consensus        90 ~t~~~Sf~~~   99 (185)
T d2atxa1          90 VVNPASFQNV   99 (185)
T ss_dssp             TTCHHHHHHH
T ss_pred             cchHHHHHHH
Confidence            9998887653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.7e-16  Score=101.90  Aligned_cols=89  Identities=20%  Similarity=0.284  Sum_probs=71.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEE--ECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELS--IGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~--~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++++....+ ..+.||++.+.....  .++  ..+.+||.+|++..+.+++.|++++++++.++
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   83 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF   83 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhcc
Confidence            4799999999999999999998776 567788875544333  344  78899999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +++...+++....|
T Consensus        84 d~~~~~Sf~~~~~~   97 (170)
T d1i2ma_          84 DVTSRVTYKNVPNW   97 (170)
T ss_dssp             ETTSGGGGTTHHHH
T ss_pred             ccccccccchhHHH
Confidence            99998888775544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=7.7e-16  Score=102.24  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|+.|+|||||++.+.+..+ .++.||.+....  .+.+++  ..+.+||++|+++++.+|+.|+++++++++++
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~   86 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY   86 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence            4699999999999999999998776 567787765443  455665  67778999999999999999999999999999


Q ss_pred             eCCCcccccc
Q 033893           96 KIEFRDFYEV  105 (109)
Q Consensus        96 ~~~~~~~~~~  105 (109)
                      +.+...++..
T Consensus        87 d~t~~~s~~~   96 (194)
T d2bcgy1          87 DVTDQESFNG   96 (194)
T ss_dssp             ETTCHHHHHH
T ss_pred             eCcchhhhhh
Confidence            9987766554

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=6.6e-16  Score=100.38  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=70.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++.+.+.++ ....|+.+.+.  ..+..++  ..+.+||++|+++++.+|+.|+++++++++++
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~   85 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY   85 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            4699999999999999999998776 45666665433  3455554  67889999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      +.+...+++..
T Consensus        86 d~~~~~s~~~~   96 (169)
T d3raba_          86 DITNEESFNAV   96 (169)
T ss_dssp             ETTCHHHHHTH
T ss_pred             ECccchhhhhh
Confidence            99887766543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=98.99  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=73.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+++|.+|+|||||++.+....+. +..||.. .....+.+++  +.+.+||.+|+++++..++.|++++++++++
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v   84 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV   84 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeee
Confidence            4568999999999999999999988764 4556543 2235677776  5677899999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      ++++...+++....|
T Consensus        85 ~d~~~~~s~~~~~~~   99 (173)
T d2fn4a1          85 FAINDRQSFNEVGKL   99 (173)
T ss_dssp             EETTCHHHHHHHHHH
T ss_pred             cccccccccchhhhh
Confidence            999988777654433

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.2e-16  Score=100.61  Aligned_cols=88  Identities=22%  Similarity=0.291  Sum_probs=66.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -||+++|.+|+|||||++++.+.++ .+..||.+.+..  .+..++  ..+.+||.+|+++.+.+++.|+++++++++++
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~   83 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVY   83 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEE
Confidence            4789999999999999999998877 567787775543  444444  78889999999999999999999999999999


Q ss_pred             eCCCccccccccC
Q 033893           96 KIEFRDFYEVEIF  108 (109)
Q Consensus        96 ~~~~~~~~~~~~~  108 (109)
                      +++...+++....
T Consensus        84 d~~~~~Sf~~~~~   96 (167)
T d1z08a1          84 DITDEDSFQKVKN   96 (167)
T ss_dssp             ETTCHHHHHHHHH
T ss_pred             eCCchhHHHhhhh
Confidence            9998888766443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1e-15  Score=99.10  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +..+|+|+|.+|+|||||++++.+..+ .++.||.+.+ ...+.+++  +.+.+||.+|.+.++.++..+++++++++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   82 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence            455799999999999999999987776 4577887754 34567777  5667899999999999999999999999999


Q ss_pred             EeCCCccccccccC
Q 033893           95 KKIEFRDFYEVEIF  108 (109)
Q Consensus        95 ~~~~~~~~~~~~~~  108 (109)
                      ++++...+++....
T Consensus        83 ~d~~~~~s~~~~~~   96 (167)
T d1xtqa1          83 YSVTSIKSFEVIKV   96 (167)
T ss_dssp             EETTCHHHHHHHHH
T ss_pred             cccchhhhhhhhhh
Confidence            99998887766543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-15  Score=100.24  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      .-+|+++|.+|+|||||++++...++ .++.||.+... ..+..++  ..+.+||.+|+++++.+++.|++++++++.++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   82 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   82 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence            34789999999999999999998876 56778876433 3444555  57889999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +++...+++...
T Consensus        83 d~~~~~Sf~~~~   94 (191)
T d2ngra_          83 SVVSPSSFENVK   94 (191)
T ss_dssp             ETTCHHHHHHHH
T ss_pred             ccchHHHHHHHH
Confidence            999998887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.8e-15  Score=97.50  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=75.5

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ++..+|+++|.+|+|||||++.+.+.++ .++.||.+.. .-.+..++  ..+.+||.+|+++++.+++.|++++++++.
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            3567899999999999999999998776 5667776532 24455666  677799999999999999999999999999


Q ss_pred             EEeCCCccccccccCC
Q 033893           94 TKKIEFRDFYEVEIFW  109 (109)
Q Consensus        94 ~~~~~~~~~~~~~~~w  109 (109)
                      +++++...+++....|
T Consensus        82 v~d~~d~~Sf~~~~~~   97 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRF   97 (169)
T ss_dssp             EEETTCHHHHHTHHHH
T ss_pred             ecccccchhhhccchh
Confidence            9999988887765444

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.5e-15  Score=96.87  Aligned_cols=87  Identities=18%  Similarity=0.259  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      ||+++|.+|+|||||++++.+.++ .+..|+.+....  .+..++  +.+.+||.+|+++++..++.|++++++++.+++
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d   81 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD   81 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeec
Confidence            789999999999999999998876 456777654433  344444  678899999999999999999999999999999


Q ss_pred             CCCccccccccC
Q 033893           97 IEFRDFYEVEIF  108 (109)
Q Consensus        97 ~~~~~~~~~~~~  108 (109)
                      .+...+++....
T Consensus        82 ~~~~~s~~~i~~   93 (164)
T d1yzqa1          82 ITNVNSFQQTTK   93 (164)
T ss_dssp             TTCHHHHHTHHH
T ss_pred             cccccchhhhHh
Confidence            988887766443

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.1e-15  Score=100.84  Aligned_cols=83  Identities=25%  Similarity=0.413  Sum_probs=66.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      ..+|+++|.+|||||||++++.  ..+...||.++...++.+.+..+.+||.+|++..+..|..|++++++++.+++.+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~   79 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE   79 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCC
Confidence            3578999999999999999994  23678899999888999999999999999999999999999999999999999876


Q ss_pred             ccccc
Q 033893          100 RDFYE  104 (109)
Q Consensus       100 ~~~~~  104 (109)
                      ...+.
T Consensus        80 ~~~~~   84 (200)
T d1zcba2          80 FDQVL   84 (200)
T ss_dssp             TTCEE
T ss_pred             cceee
Confidence            65443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=98.18  Aligned_cols=91  Identities=15%  Similarity=0.163  Sum_probs=74.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++-+|+++|.+|+|||||++++...++ .++.|+.+... ..+..++  ..+.+||.+|++..+.+++.|++++++++.+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            345899999999999999999998877 45677766332 3444444  6788999999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      ++++...+++....|
T Consensus        82 ~d~~~~~sf~~~~~~   96 (167)
T d1c1ya_          82 YSITAQSTFNDLQDL   96 (167)
T ss_dssp             EETTCHHHHHTHHHH
T ss_pred             eeccchhhhHhHHHH
Confidence            999988887765544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3.7e-15  Score=96.63  Aligned_cols=88  Identities=16%  Similarity=0.321  Sum_probs=73.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .-+|+++|.+|+|||||++.+.+.++ ....||.+.+  .-++..++  ..+.+||.+|+++...+++.|+..+++++.+
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            35789999999999999999998876 5567777643  34566666  6788999999999999999999999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      ++++...+++...
T Consensus        83 ~d~~~~~s~~~~~   95 (170)
T d1ek0a_          83 YDVTKPQSFIKAR   95 (170)
T ss_dssp             EETTCHHHHHHHH
T ss_pred             EeCCcccchhhhh
Confidence            9998887776543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.2e-15  Score=97.55  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=73.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ++-+|+++|.+|+|||||++++...++ .++.||......  .+..++  ..+.+||.+|+++.+.+++.|+++++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            466899999999999999999998876 566777664433  334444  566789999999999999999999999999


Q ss_pred             EEeCCCccccccccC
Q 033893           94 TKKIEFRDFYEVEIF  108 (109)
Q Consensus        94 ~~~~~~~~~~~~~~~  108 (109)
                      +++++...+++....
T Consensus        83 v~d~~~~~s~~~~~~   97 (167)
T d1z0ja1          83 VYDITKEETFSTLKN   97 (167)
T ss_dssp             EEETTCHHHHHHHHH
T ss_pred             EeeechhhhhhhHHH
Confidence            999988887766443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=96.38  Aligned_cols=87  Identities=23%  Similarity=0.361  Sum_probs=71.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -||+|+|.+|+|||||++++.+.++. +..|+...+.  -.+..++  +.+.+||.+|+++++.++..+++++++++.++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~   84 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   84 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEe
Confidence            47899999999999999999988764 4555555443  3445565  47888999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +++...+++...
T Consensus        85 d~~~~~s~~~~~   96 (166)
T d1z0fa1          85 DITRRSTYNHLS   96 (166)
T ss_dssp             ETTCHHHHHTHH
T ss_pred             ccCchHHHHHHH
Confidence            998887776543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.3e-15  Score=96.31  Aligned_cols=89  Identities=17%  Similarity=0.111  Sum_probs=73.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +-+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+..++  ..+.+||.+|++.++..+..|+++++++++++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            45799999999999999999998876 46778877443 3445566  56678999999999999999999999999999


Q ss_pred             eCCCccccccccC
Q 033893           96 KIEFRDFYEVEIF  108 (109)
Q Consensus        96 ~~~~~~~~~~~~~  108 (109)
                      |++...+++....
T Consensus        82 d~~~~~s~~~~~~   94 (171)
T d2erxa1          82 SITSRQSLEELKP   94 (171)
T ss_dssp             ETTCHHHHHTTHH
T ss_pred             ecccccchhcccc
Confidence            9988877766443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.2e-15  Score=96.51  Aligned_cols=89  Identities=15%  Similarity=0.250  Sum_probs=73.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++.+.+.++ .++.||.+.+..  .+..++  ..+.+||.+|++++..+++.+++++++++.++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~   82 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVF   82 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEE
Confidence            3689999999999999999997776 567888875543  444455  67789999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +++...+++....|
T Consensus        83 d~~~~~s~~~~~~~   96 (164)
T d1z2aa1          83 STTDRESFEAISSW   96 (164)
T ss_dssp             ETTCHHHHHTHHHH
T ss_pred             eccchhhhhhcccc
Confidence            99888877665433

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.56  E-value=5.6e-15  Score=95.98  Aligned_cols=90  Identities=13%  Similarity=0.242  Sum_probs=71.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      +-.||+++|.+|+|||||++.+...++ .++.||.+.+ ..++.+++  ..+.+||.+|+++.+.+++.+++++++++.+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            345899999999999999999987776 5678887744 35667777  5667899999999999999999999999999


Q ss_pred             EeCCCccccccccC
Q 033893           95 KKIEFRDFYEVEIF  108 (109)
Q Consensus        95 ~~~~~~~~~~~~~~  108 (109)
                      ++.+...+++....
T Consensus        83 ~d~~~~~s~~~~~~   96 (168)
T d1u8za_          83 FSITEMESFAATAD   96 (168)
T ss_dssp             EETTCHHHHHHHHH
T ss_pred             eeccchhhhhhHHH
Confidence            99988777765443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.1e-15  Score=96.08  Aligned_cols=88  Identities=16%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .-+|+++|.+|+|||||++++.+.++ ....|+.+....  .+..++  ..+.+||.+|+++++.+++.|++++++++.+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            45799999999999999999998877 456777765443  333444  6778899999999999999999999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      ++.+...+++...
T Consensus        86 ~d~~~~~s~~~~~   98 (170)
T d1r2qa_          86 YDITNEESFARAK   98 (170)
T ss_dssp             EETTCHHHHHHHH
T ss_pred             eccchhhHHHHHH
Confidence            9998887766543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.1e-15  Score=96.01  Aligned_cols=88  Identities=23%  Similarity=0.333  Sum_probs=70.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ..-||+++|..|+|||||++++.+.++. +..|+....  .-.+.+++  +.+.+||++|+++++.+|+.|+.++++++.
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            3457999999999999999999988773 444544433  33456665  578899999999999999999999999999


Q ss_pred             EEeCCCccccccc
Q 033893           94 TKKIEFRDFYEVE  106 (109)
Q Consensus        94 ~~~~~~~~~~~~~  106 (109)
                      +++++...+++..
T Consensus        86 v~d~~~~~s~~~~   98 (177)
T d1x3sa1          86 VYDVTRRDTFVKL   98 (177)
T ss_dssp             EEETTCHHHHHTH
T ss_pred             EEECCCccccccc
Confidence            9998877666543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-15  Score=97.14  Aligned_cols=86  Identities=24%  Similarity=0.425  Sum_probs=70.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEE--EEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEE--LSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~--i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -||+++|.+|+|||||++.+.+.++ ....|+.......  +..++  ..+.+||.+|++++..+|+.+++++++++.++
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   85 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEE
Confidence            4699999999999999999998776 4566766554332  33343  57889999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      +.+...+++..
T Consensus        86 d~~~~~s~~~~   96 (174)
T d2bmea1          86 DITSRETYNAL   96 (174)
T ss_dssp             ETTCHHHHHTH
T ss_pred             ecccchhHHHH
Confidence            99887766543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.2e-15  Score=95.67  Aligned_cols=86  Identities=21%  Similarity=0.292  Sum_probs=61.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cc-cCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQ-HQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~-~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      -+|+++|++|+|||||++++.+.++ .. ..|+.+.+..  .+..++  ..+.+||++|+++++.+|+.|++++++++.+
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v   86 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLL   86 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEE
Confidence            3799999999999999999988775 33 3455554443  455666  4778999999999999999999999999999


Q ss_pred             EeCCCccccccc
Q 033893           95 KKIEFRDFYEVE  106 (109)
Q Consensus        95 ~~~~~~~~~~~~  106 (109)
                      ++++...++...
T Consensus        87 ~d~~~~~s~~~~   98 (170)
T d2g6ba1          87 YDVTNKASFDNI   98 (170)
T ss_dssp             EETTCHHHHHTH
T ss_pred             ecCCcccchhhh
Confidence            999887766543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.5e-15  Score=95.21  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++-+|+++|.+|+|||||++++.+.++ .+..|+.+.. .-.+.+++  ..+.+||.+|++..+..+..|++++++++.+
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            456899999999999999999998876 4566776532 33455665  5777899999999999999999999999999


Q ss_pred             EeCCCccccccccC
Q 033893           95 KKIEFRDFYEVEIF  108 (109)
Q Consensus        95 ~~~~~~~~~~~~~~  108 (109)
                      ++++...+++....
T Consensus        82 ~d~~~~~s~~~~~~   95 (167)
T d1kaoa_          82 YSLVNQQSFQDIKP   95 (167)
T ss_dssp             EETTCHHHHHHHHH
T ss_pred             eeecchhhhhhhhc
Confidence            99988877765443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.3e-15  Score=96.43  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++-+|+++|.+|+|||||++++...++ .++.||..... -.+..++  ..+.+||.++++.+..+++.|++++++++.+
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC   83 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeee
Confidence            345789999999999999999998876 56788887443 3456665  5677999999999999999999999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      +|++...+++...
T Consensus        84 ~d~~~~~sf~~i~   96 (183)
T d1mh1a_          84 FSLVSPASFENVR   96 (183)
T ss_dssp             EETTCHHHHHHHH
T ss_pred             eccchHHHHHHHH
Confidence            9999888776543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.5e-15  Score=95.08  Aligned_cols=91  Identities=14%  Similarity=0.211  Sum_probs=70.8

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC-ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~-~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++.+|+++|.+|+|||||++++.+..+ ..+.||.+. ..-.+.+++  +.+.+||.+|.+.+...++.+++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            346899999999999999999998776 566777652 335566776  5788999999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      ++.+...+++....|
T Consensus        84 ~d~~~~~s~~~~~~~   98 (171)
T d2erya1          84 FSVTDRGSFEEIYKF   98 (171)
T ss_dssp             EETTCHHHHHTHHHH
T ss_pred             eccccccchhhHHHH
Confidence            999888777665443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=7e-15  Score=96.56  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=72.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC-ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~-~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      .+|+++|.+|+|||||++.+...++ .++.||... ..-.+.+++  +.+.+||.+|++.++..++.+++++++++++++
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   82 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFD   82 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeee
Confidence            4789999999999999999998876 567887652 233445554  677899999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      ++...+++...
T Consensus        83 ~~~~~Sf~~~~   93 (179)
T d1m7ba_          83 ISRPETLDSVL   93 (179)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cccCCCHHHHH
Confidence            99888877543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.55  E-value=2.5e-14  Score=92.44  Aligned_cols=93  Identities=57%  Similarity=0.893  Sum_probs=73.9

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVI   89 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~   89 (109)
                      +++-+.+..++.||+|+|++|||||||++++.+..+.+..|+.+.....+.+++..+..|+..+.......+..++...+
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN   82 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCS
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccc
Confidence            45667788889999999999999999999999988877788888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCccc
Q 033893           90 GSFKTKKIEFRDF  102 (109)
Q Consensus        90 ~~v~~~~~~~~~~  102 (109)
                      .++.+.+.+....
T Consensus        83 ~~~~~~d~~d~~~   95 (186)
T d1f6ba_          83 GIVFLVDCADHER   95 (186)
T ss_dssp             EEEEEEETTCGGG
T ss_pred             eeeeeeeccCccc
Confidence            9999998766543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=7.2e-16  Score=100.55  Aligned_cols=86  Identities=20%  Similarity=0.332  Sum_probs=48.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++++.+.++ .+..||.+.+  .-++.+++  +.+.+||.+|++.+..+|+.|++++++++.++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~   86 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY   86 (173)
T ss_dssp             EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEE
Confidence            3699999999999999999998776 4555665533  34567776  56678999999999999999999999999999


Q ss_pred             eCCCccccccc
Q 033893           96 KIEFRDFYEVE  106 (109)
Q Consensus        96 ~~~~~~~~~~~  106 (109)
                      |.+...+++..
T Consensus        87 d~~~~~s~~~~   97 (173)
T d2fu5c1          87 DITNEKSFDNI   97 (173)
T ss_dssp             ETTCHHHHHHH
T ss_pred             ECCChhhHHHH
Confidence            99887776554

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.54  E-value=9.2e-15  Score=92.71  Aligned_cols=83  Identities=33%  Similarity=0.528  Sum_probs=70.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD  101 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~  101 (109)
                      ||+++|++|||||||++.+.+.++....++............+.+.+||.+|....+..+..|+.++++++.+++.+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE   81 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChH
Confidence            68999999999999999999887766555555555666777899999999999999999999999999999999987665


Q ss_pred             ccc
Q 033893          102 FYE  104 (109)
Q Consensus       102 ~~~  104 (109)
                      ++.
T Consensus        82 ~~~   84 (160)
T d1r8sa_          82 RVN   84 (160)
T ss_dssp             GHH
T ss_pred             HHH
Confidence            543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=98.58  Aligned_cols=86  Identities=17%  Similarity=0.273  Sum_probs=67.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC------------EEEEEEEcCCcccccccHHhhh
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK------------IKFKAFDLGGHQIARRVWKDYY   85 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~------------~~i~~~d~~g~~~~r~~~~~~~   85 (109)
                      .+|+++|++|+|||||++.+.+.++ .+..|+...+  .-.+.+++            ..+.+||++|+++++.+|+.|+
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~   85 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFF   85 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHH
Confidence            4789999999999999999998776 3444444322  23333322            5788999999999999999999


Q ss_pred             hcCCEEEEEEeCCCccccccc
Q 033893           86 AKVIGSFKTKKIEFRDFYEVE  106 (109)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~~~  106 (109)
                      +++++++.+++++...+++..
T Consensus        86 ~~~~~~i~v~d~~~~~s~~~~  106 (186)
T d2f7sa1          86 RDAMGFLLMFDLTSQQSFLNV  106 (186)
T ss_dssp             TTCCEEEEEEETTCHHHHHHH
T ss_pred             hcCCEEEEEEeccccccceee
Confidence            999999999999887766543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-14  Score=94.57  Aligned_cols=87  Identities=22%  Similarity=0.368  Sum_probs=69.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      +|+++|.+|+|||||++++.+..+ .+..|+.+..  ...+..++  ..+.+||.+|+++++..|..+++++++++.+++
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d   85 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD   85 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEE
Confidence            689999999999999999998776 4555555533  34556676  577799999999999999999999999999999


Q ss_pred             CCCccccccccC
Q 033893           97 IEFRDFYEVEIF  108 (109)
Q Consensus        97 ~~~~~~~~~~~~  108 (109)
                      .+...++....+
T Consensus        86 ~~~~~S~~~~~~   97 (175)
T d2f9la1          86 IAKHLTYENVER   97 (175)
T ss_dssp             TTCHHHHHTHHH
T ss_pred             CCCcccchhHHH
Confidence            988877765443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.2e-14  Score=91.94  Aligned_cols=82  Identities=62%  Similarity=0.960  Sum_probs=73.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR  100 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~  100 (109)
                      |||+++|++|||||||++++.+.++.+..||.+.....+.+++.....||..+.......++.++..+++.+.+++.+..
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   80 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP   80 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch
Confidence            68999999999999999999999888889998888888888888888999999998899999999999999999998665


Q ss_pred             cc
Q 033893          101 DF  102 (109)
Q Consensus       101 ~~  102 (109)
                      ..
T Consensus        81 ~~   82 (166)
T d2qtvb1          81 ER   82 (166)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=92.87  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=73.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      ++.+|+++|.+|+|||||++++.+..+ .++.|+.+... ..+..++  ..+.+||..|++..+..++.+++++++++.+
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            356899999999999999999998876 45667765332 3344454  5677899999999999999999999999999


Q ss_pred             EeCCCccccccccCC
Q 033893           95 KKIEFRDFYEVEIFW  109 (109)
Q Consensus        95 ~~~~~~~~~~~~~~w  109 (109)
                      ++.+...+++...+|
T Consensus        82 ~d~~~~~s~~~~~~~   96 (166)
T d1ctqa_          82 FAINNTKSFEDIHQY   96 (166)
T ss_dssp             EETTCHHHHHTHHHH
T ss_pred             ecccccccHHHHHHH
Confidence            999888887765554

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.1e-14  Score=91.73  Aligned_cols=87  Identities=20%  Similarity=0.242  Sum_probs=70.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      +-+|+++|.+|+|||||++.+.+..+ .++.||.+.+. ..+..++  +.+.+||.+|++... ....|++++++++.++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            45789999999999999999998876 56788877542 3445566  678899999988764 4567999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +++...++....
T Consensus        81 d~~~~~s~~~~~   92 (168)
T d2atva1          81 DITDRGSFEEVL   92 (168)
T ss_dssp             ETTCHHHHHTHH
T ss_pred             ccCCccchhhhh
Confidence            999888776543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=93.22  Aligned_cols=87  Identities=24%  Similarity=0.370  Sum_probs=67.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|++|+|||||++++.+.++ .+..|+.....  .....++  ..+.+||.+|++.++.+|+.++..+++++.++
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            3789999999999999999998876 44555554332  2333444  67789999999999999999999999999999


Q ss_pred             eCCCcccccccc
Q 033893           96 KIEFRDFYEVEI  107 (109)
Q Consensus        96 ~~~~~~~~~~~~  107 (109)
                      +++...+++...
T Consensus        84 d~~~~~sf~~~~   95 (173)
T d2a5ja1          84 DITRRETFNHLT   95 (173)
T ss_dssp             ETTCHHHHHTHH
T ss_pred             eecChHHHHhHH
Confidence            998887776543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.3e-14  Score=92.72  Aligned_cols=85  Identities=13%  Similarity=0.106  Sum_probs=68.1

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~   94 (109)
                      .+.-+|+++|.+|+|||||++.+.+.++....|+.... ...+.+++  +.+.+||.+|+.+     ..|++.+++++++
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----~~~~~~ad~~ilV   77 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV   77 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----HHHHHHCSEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccc-----cccccccceeEEE
Confidence            45678999999999999999999988887666665433 34577787  5678999999875     3589999999999


Q ss_pred             EeCCCcccccccc
Q 033893           95 KKIEFRDFYEVEI  107 (109)
Q Consensus        95 ~~~~~~~~~~~~~  107 (109)
                      ++++...+++...
T Consensus        78 fd~~~~~Sf~~~~   90 (175)
T d2bmja1          78 FSLEDENSFQAVS   90 (175)
T ss_dssp             EETTCHHHHHHHH
T ss_pred             eecccchhhhhhH
Confidence            9998887766543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.49  E-value=9e-15  Score=100.99  Aligned_cols=50  Identities=26%  Similarity=0.445  Sum_probs=47.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+||||||||||++++.|.        ..|+.|+|.++|.++.
T Consensus        18 al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl--------~~p~sG~I~~~g~~i~   68 (240)
T d1g2912          18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--------EEPSRGQIYIGDKLVA   68 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred             EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCCEEEECCEEec
Confidence            67899999999986 99999999999999999999        8899999999999887

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=4.6e-15  Score=102.39  Aligned_cols=50  Identities=28%  Similarity=0.450  Sum_probs=46.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+||||||||||++++.|.        ..|+.|+|.++|.++.
T Consensus        21 al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl--------~~p~sG~I~i~g~~i~   71 (239)
T d1v43a3          21 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--------EEPTEGRIYFGDRDVT   71 (239)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCCCEEEEcceecc
Confidence            67899999999986 99999999999999999999        8899999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=1.7e-15  Score=104.10  Aligned_cols=50  Identities=30%  Similarity=0.448  Sum_probs=46.8

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++++|.        ..|+.|+|.++|.++.
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl--------~~p~sG~I~~~g~~i~   70 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--------DKPTEGEVYIDNIKTN   70 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECT
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCC--------CCCCcceeEECCEEcC
Confidence            58899999999986 99999999999999999999        8899999999998776

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.48  E-value=2.2e-13  Score=87.96  Aligned_cols=89  Identities=30%  Similarity=0.509  Sum_probs=73.4

Q ss_pred             CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      |..++.+|+++|.+|||||||++++.+.++.+..|+......++...+..+..+|..+.+..+..|..++..+++++.+.
T Consensus        11 ~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~   90 (177)
T d1zj6a1          11 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV   90 (177)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeec
Confidence            44667899999999999999999999988877777777777788888999999999999999999999999999999999


Q ss_pred             eCCCccccc
Q 033893           96 KIEFRDFYE  104 (109)
Q Consensus        96 ~~~~~~~~~  104 (109)
                      +.+...+++
T Consensus        91 d~~d~~~~~   99 (177)
T d1zj6a1          91 DSTDRERIS   99 (177)
T ss_dssp             ETTCTTTHH
T ss_pred             ccccccchh
Confidence            886655443

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=3.4e-14  Score=92.15  Aligned_cols=88  Identities=17%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEE--CC---EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSI--GK---IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~--~~---~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      ||+++|++|+|||||++.+.+.++ ....|+.+........  .+   ..+.+||.+|+++....+..|++.++++++++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVY   83 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEe
Confidence            689999999999999999998776 4556666543332222  22   67889999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +.+...+++....|
T Consensus        84 d~~~~~s~~~~~~~   97 (175)
T d1ky3a_          84 DVTNASSFENIKSW   97 (175)
T ss_dssp             ETTCHHHHHTHHHH
T ss_pred             ecccccccchhhhc
Confidence            99887776654433

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.46  E-value=5.7e-15  Score=102.09  Aligned_cols=50  Identities=22%  Similarity=0.312  Sum_probs=47.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        20 aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl--------~~p~~G~I~~~g~~i~   70 (242)
T d1oxxk2          20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--------DVPSTGELYFDDRLVA   70 (242)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred             EEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC--------cCCCCceEEECCEEee
Confidence            68899999999986 99999999999999999999        8899999999999886

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=90.63  Aligned_cols=86  Identities=14%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEE--EECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEEL--SIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK   96 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i--~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~   96 (109)
                      ||+++|.+|+|||||++.+.+.++ .++.||.+.+....  ...+  ..+.+||++|....+..++.++.++++++++++
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   83 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFD   83 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeec
Confidence            689999999999999999998776 56778877554332  3333  677889999999999999999999999999999


Q ss_pred             CCCcccccccc
Q 033893           97 IEFRDFYEVEI  107 (109)
Q Consensus        97 ~~~~~~~~~~~  107 (109)
                      .+...+++...
T Consensus        84 ~~~~~~~~~~~   94 (184)
T d1vg8a_          84 VTAPNTFKTLD   94 (184)
T ss_dssp             TTCHHHHHTHH
T ss_pred             ccchhhhhcch
Confidence            97766665543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2e-14  Score=99.20  Aligned_cols=50  Identities=22%  Similarity=0.345  Sum_probs=46.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        20 al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl--------~~p~sG~I~~~g~~i~   70 (240)
T d3dhwc1          20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--------ERPTEGSVLVDGQELT   70 (240)
T ss_dssp             EEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEEC
T ss_pred             EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------ccccCCceEEcCeEee
Confidence            68899999999996 99999999999999999999        8899999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.44  E-value=1.4e-14  Score=99.97  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++||++++|++ +|+||||||||||++++.|.        ..|+.|+|.++|.++.
T Consensus        21 al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl--------~~p~~G~I~~~G~~i~   71 (240)
T d1ji0a_          21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--------VRAQKGKIIFNGQDIT   71 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCccEEEecccccc
Confidence            68899999999997 99999999999999999999        8899999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=2.3e-14  Score=99.56  Aligned_cols=51  Identities=14%  Similarity=0.304  Sum_probs=47.4

Q ss_pred             HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893            9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus         9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .+|++|||++++|++ +|+||||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        18 ~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl--------~~p~~G~I~~~g~~i~   69 (254)
T d1g6ha_          18 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--------LKADEGRVYFENKDIT   69 (254)
T ss_dssp             EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECT
T ss_pred             EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC--------CcCCCcEEEECCEecc
Confidence            368899999999997 99999999999999999999        8899999999999764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-13  Score=88.19  Aligned_cols=89  Identities=17%  Similarity=0.303  Sum_probs=68.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK   95 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~   95 (109)
                      -+|+++|.+|+|||||++.+....+ .++.||.+..  .-.+..++  ..+.+||.+|+.+.+..++.++..+++++.++
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~   86 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTF   86 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEE
Confidence            3789999999999999999988776 4566655432  33445565  56678999999999999999999999999999


Q ss_pred             eCCCccccccccCC
Q 033893           96 KIEFRDFYEVEIFW  109 (109)
Q Consensus        96 ~~~~~~~~~~~~~w  109 (109)
                      +.+...+++....|
T Consensus        87 d~~~~~s~~~~~~~  100 (174)
T d1wmsa_          87 SVDDSQSFQNLSNW  100 (174)
T ss_dssp             ETTCHHHHHTHHHH
T ss_pred             eeecccccchhhhH
Confidence            99888777665443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=2.7e-14  Score=99.42  Aligned_cols=52  Identities=15%  Similarity=0.354  Sum_probs=48.1

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF   69 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~   69 (109)
                      +|++|+|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.++...
T Consensus        17 al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl--------~~p~~G~I~~~G~~i~~~   69 (258)
T d1b0ua_          17 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGAIIVNGQNINLV   69 (258)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECCEE
T ss_pred             EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC--------ccCCCCCEEECCEEeccC
Confidence            68899999999997 99999999999999999999        888999999999988744

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.4e-14  Score=99.63  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=46.2

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+||||||||||+++++|.        ..|+.|+|.++|.++.
T Consensus        15 ~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl--------~~p~sG~I~i~g~~i~   65 (232)
T d2awna2          15 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--------ETITSGDLFIGEKRMN   65 (232)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEESSSCCT
T ss_pred             EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCCEEEECCEECC
Confidence            67899999999987 99999999999999999999        8899999999997664

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.42  E-value=1.8e-14  Score=98.83  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=46.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|+++||++++|++ +|+||||||||||+++|+|.        ..|+.|+|.++|.++.
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl--------~~p~sG~I~~~G~~i~   65 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--------HVPDSGRILLDGKDVT   65 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--------cCCCCCEEEEccEecc
Confidence            57899999999997 99999999999999999999        8899999999998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.42  E-value=1.6e-14  Score=97.17  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++++|.        ..|+.|+|.++|.++.
T Consensus        16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl--------~~p~~G~I~~~g~~i~   66 (200)
T d1sgwa_          16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--------LKPLKGEIIYNGVPIT   66 (200)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEGG
T ss_pred             EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--------cccCCCEEEECCEehh
Confidence            67899999999996 99999999999999999999        8899999999997653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=2.6e-14  Score=98.54  Aligned_cols=49  Identities=27%  Similarity=0.364  Sum_probs=45.9

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      +|++++|++++|++ +|+||||||||||+++|+|.        ..|+.|+|.++|.++
T Consensus        17 vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~--------~~p~~G~i~i~G~~i   66 (238)
T d1vpla_          17 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--------IKPSSGIVTVFGKNV   66 (238)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEET
T ss_pred             EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCCEEEECcEec
Confidence            68899999999997 99999999999999999999        889999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4.6e-13  Score=85.91  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccc-cccHHhhhhcCCEEEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIA-RRVWKDYYAKVIGSFKT   94 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~-r~~~~~~~~~~~~~v~~   94 (109)
                      -+|+++|.+|+|||||++++...++ .+..|+.+....  .+.+..  ..+.+||..+.+.. ...++.|+.++++++.+
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv   82 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFV   82 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEE
Confidence            3689999999999999999998776 445555553332  333443  67778898887765 45688999999999999


Q ss_pred             EeCCCccccccccC
Q 033893           95 KKIEFRDFYEVEIF  108 (109)
Q Consensus        95 ~~~~~~~~~~~~~~  108 (109)
                      +|++...+++....
T Consensus        83 ~d~~~~~s~~~~~~   96 (165)
T d1z06a1          83 YDMTNMASFHSLPA   96 (165)
T ss_dssp             EETTCHHHHHTHHH
T ss_pred             EEeehhhhhhhhhh
Confidence            99988887776443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.40  E-value=1.8e-12  Score=82.25  Aligned_cols=84  Identities=36%  Similarity=0.518  Sum_probs=72.7

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      ++-+|+++|.+|||||||++++.+.++.+..|+.+........++..+..++..+.+..+..+..++...++.+...+.+
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   83 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence            34579999999999999999999988877778877777777788999999999999999999999999999999988876


Q ss_pred             Cccc
Q 033893           99 FRDF  102 (109)
Q Consensus        99 ~~~~  102 (109)
                      ...+
T Consensus        84 ~~~~   87 (169)
T d1upta_          84 DRDR   87 (169)
T ss_dssp             CCTT
T ss_pred             hcch
Confidence            5443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.8e-12  Score=86.03  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=68.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC---CEEEEEEEcCCccccc-ccHHhhhhcCCEEEEEEeC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG---KIKFKAFDLGGHQIAR-RVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~---~~~i~~~d~~g~~~~r-~~~~~~~~~~~~~v~~~~~   97 (109)
                      .|+|+|++|||||||+++|.+.++....|+.+.+.+.+.+.   +..+.+||.+|+++++ ..|+.|+..+++++.+++.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            48999999999999999999888877778888887777764   4788999999998876 5788899999999999987


Q ss_pred             CCcc
Q 033893           98 EFRD  101 (109)
Q Consensus        98 ~~~~  101 (109)
                      +...
T Consensus        82 ~d~~   85 (207)
T d2fh5b1          82 AAFQ   85 (207)
T ss_dssp             TTHH
T ss_pred             cccc
Confidence            6543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-13  Score=95.92  Aligned_cols=50  Identities=20%  Similarity=0.397  Sum_probs=46.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl--------~~p~~G~I~i~g~~i~   79 (251)
T d1jj7a_          29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--------YQPTGGQLLLDGKPLP   79 (251)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEGG
T ss_pred             eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--------cCCCcCEEEECCEecc
Confidence            68899999999985 99999999999999999999        8899999999998775

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.35  E-value=9.7e-14  Score=95.78  Aligned_cols=50  Identities=26%  Similarity=0.439  Sum_probs=46.6

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.++++++ +|+|+||||||||+++|.|.        ..|+.|+|.++|.++.
T Consensus        17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~~i~   67 (242)
T d1mv5a_          17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--------YQPTAGEITIDGQPID   67 (242)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--------SCCSBSCEEETTEEST
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh--------hCCCCCEEEECCEEec
Confidence            68899999999986 99999999999999999999        8889999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.4e-13  Score=94.96  Aligned_cols=50  Identities=22%  Similarity=0.355  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..|..|+|.++|.++.
T Consensus        18 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~~i~   68 (241)
T d2pmka1          18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--------YIPENGQVLIDGHDLA   68 (241)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEETT
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------CCCCCCEEEECCEEec
Confidence            57899999999985 99999999999999999999        8889999999998765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.32  E-value=2.2e-13  Score=94.46  Aligned_cols=50  Identities=14%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|.++++++ +|+|+||||||||++.|.|.        ..|+.|+|.++|.++.
T Consensus        30 ~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~~i~   80 (253)
T d3b60a1          30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--------YDIDEGHILMDGHDLR   80 (253)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--------TCCSEEEEEETTEETT
T ss_pred             eeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--------cCCCccEEEECCcccc
Confidence            68899999999975 99999999999999999999        8889999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.29  E-value=1.1e-12  Score=90.42  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=41.4

Q ss_pred             hcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           13 SLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        13 ~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +++|+..++.++|+||||||||||+++|+|.        ..|+.|+|.++|.++.
T Consensus        17 ~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl--------~~p~~G~I~~~G~~i~   63 (240)
T d2onka1          17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGI--------VKPDRGEVRLNGADIT   63 (240)
T ss_dssp             EEEEEECSSEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred             EEEEEeCCEEEEEECCCCChHHHHHHHHHcC--------CCCCceEEEECCEECC
Confidence            5777776555699999999999999999999        8899999999998775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.9e-12  Score=82.02  Aligned_cols=86  Identities=13%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCCcccCc--eEEEEECC--EEEEEEEcC---CcccccccHHhhhhcCCEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQPTQHPT--SEELSIGK--IKFKAFDLG---GHQIARRVWKDYYAKVIGS   91 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~--~g~i~~~~--~~i~~~d~~---g~~~~r~~~~~~~~~~~~~   91 (109)
                      -+|+++|.+|+|||||++.+.+.++  .+..|+.+.+  ...+.+++  ..+..||..   |++  +.+++.|+++++++
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e--~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN--EWLHDHCMQVGDAY   81 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHH--HHHHHCCCCCCSEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccc--ccccccccccccee
Confidence            4799999999999999999997654  3444555433  34566776  455677764   444  34678899999999


Q ss_pred             EEEEeCCCccccccccC
Q 033893           92 FKTKKIEFRDFYEVEIF  108 (109)
Q Consensus        92 v~~~~~~~~~~~~~~~~  108 (109)
                      +.++|++...+++....
T Consensus        82 ilvfd~t~~~s~~~~~~   98 (172)
T d2g3ya1          82 LIVYSITDRASFEKASE   98 (172)
T ss_dssp             EEEEETTCHHHHHHHHH
T ss_pred             eeeecccccchhhhhhh
Confidence            99999988877765433

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.25  E-value=4.9e-13  Score=92.85  Aligned_cols=50  Identities=26%  Similarity=0.425  Sum_probs=46.3

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      +|++++|++++|++ +|+|+||||||||++.|.|.        ..|+.|+|.++|.++.
T Consensus        33 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~~i~   83 (255)
T d2hyda1          33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDGHNIK   83 (255)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--------SCCSEEEEEETTEEGG
T ss_pred             ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc--------CCccccccccCCEEcc
Confidence            68899999999975 99999999999999999999        8889999999999775

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1e-12  Score=92.27  Aligned_cols=47  Identities=19%  Similarity=0.307  Sum_probs=43.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI   64 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~   64 (109)
                      +|++++|++++|++ +|+|+||||||||+++|.|.        ..++.|+|.++|.
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~   98 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--------LEASEGIIKHSGR   98 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--------SCCSEEEEECCSC
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--------CcCCCcEEEECCE
Confidence            58899999999986 99999999999999999999        8888999999883

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=9.8e-13  Score=90.03  Aligned_cols=49  Identities=20%  Similarity=0.267  Sum_probs=42.5

Q ss_pred             HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893           10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .|++|+|++++|++ +|+|+||||||||++++.|.        . ++.|+|.++|.++.
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl--------~-~~~G~I~~~g~~i~   63 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--------T-SGKGSIQFAGQPLE   63 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS--------C-CCSSEEEESSSBGG
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------C-CCceEEEECCEECC
Confidence            47889999999997 99999999999999999996        4 35699999887554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.8e-11  Score=79.67  Aligned_cols=77  Identities=23%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc----CCEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VIGSFKTK   95 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~----~~~~v~~~   95 (109)
                      +.+|+|+|++|||||||+++|.+.++....++. ...+.+..++..+.+||++|.++.+..+..++..    ++.++...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~v   81 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV   81 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS-SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEec-ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEE
Confidence            347899999999999999999988765433322 3345666678888999999999988888777654    35555555


Q ss_pred             eC
Q 033893           96 KI   97 (109)
Q Consensus        96 ~~   97 (109)
                      +.
T Consensus        82 d~   83 (209)
T d1nrjb_          82 DS   83 (209)
T ss_dssp             ET
T ss_pred             EE
Confidence            54

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=3.8e-10  Score=72.98  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=59.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCcccccccHH--------hhhhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRVWK--------DYYAK   87 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~--------~~~~~   87 (109)
                      .+.|+|+|.+|+|||||+++|.+.+..  ...|  |.....+.....+..+.++|.+|.......+.        .++.+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence            467899999999999999999987642  2222  33345566777889999999999755433332        34567


Q ss_pred             CCEEEEEEeCCCc
Q 033893           88 VIGSFKTKKIEFR  100 (109)
Q Consensus        88 ~~~~v~~~~~~~~  100 (109)
                      +|.++.+.|.+..
T Consensus        85 ad~il~v~D~~~~   97 (178)
T d1wf3a1          85 VNAVVWVVDLRHP   97 (178)
T ss_dssp             CSEEEEEEETTSC
T ss_pred             ccceeeeechhhh
Confidence            9999999887554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=8e-10  Score=69.89  Aligned_cols=82  Identities=18%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcc--cCceEEEEECCEEEEEEEcCCcccccc--------cHHhhhhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKV   88 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~--------~~~~~~~~~   88 (109)
                      .+|+++|++|||||||+++|.+.+..  ...|..  ....+.+...+..+..+|.+|......        ....++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            47899999999999999999987642  333322  233467778899999999888544222        234567889


Q ss_pred             CEEEEEEeCCCccc
Q 033893           89 IGSFKTKKIEFRDF  102 (109)
Q Consensus        89 ~~~v~~~~~~~~~~  102 (109)
                      +.++++.+......
T Consensus        82 d~~i~~~d~~~~~~   95 (161)
T d2gj8a1          82 DRVLFMVDGTTTDA   95 (161)
T ss_dssp             SEEEEEEETTTCCC
T ss_pred             cccceeeccccccc
Confidence            99999888765543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=8.1e-10  Score=69.81  Aligned_cols=79  Identities=28%  Similarity=0.284  Sum_probs=55.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccc------cc---cHHhhhhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIA------RR---VWKDYYAKV   88 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~------r~---~~~~~~~~~   88 (109)
                      +|+++|.+|+|||||+++|.|.+.  .+..|  +.......+..++..+..+|++|....      +.   .....+.++
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~a   81 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKA   81 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhC
Confidence            689999999999999999998753  22222  223445677889999999999873211      11   122346789


Q ss_pred             CEEEEEEeCCCc
Q 033893           89 IGSFKTKKIEFR  100 (109)
Q Consensus        89 ~~~v~~~~~~~~  100 (109)
                      +.++.+.+.+..
T Consensus        82 d~ii~v~d~~~~   93 (160)
T d1xzpa2          82 DIVLFVLDASSP   93 (160)
T ss_dssp             SEEEEEEETTSC
T ss_pred             CEEEEEEeCCCC
Confidence            999998887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=6.1e-09  Score=66.93  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCccc-----------ccc----cHHhhh
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQI-----------ARR----VWKDYY   85 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~-----------~r~----~~~~~~   85 (109)
                      +|+|+|++|||||||+++|.+.+. .+..|....+...+...+.  .++|++|...           ...    ......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~~--~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNH--KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA   79 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETTE--EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccccccccc--eecccCCceeccccccccccccchhhhhhhhhcc
Confidence            689999999999999999998765 2334422233445555555  4569988421           111    223345


Q ss_pred             hcCCEEEEEEeCC
Q 033893           86 AKVIGSFKTKKIE   98 (109)
Q Consensus        86 ~~~~~~v~~~~~~   98 (109)
                      ++++.++.+.|.+
T Consensus        80 ~~~d~~~~vvD~~   92 (184)
T d2cxxa1          80 KNIDVAVLVVDGK   92 (184)
T ss_dssp             GGCCEEEEEEETT
T ss_pred             cccchheeeeecc
Confidence            6788888887753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=1.1e-08  Score=65.36  Aligned_cols=77  Identities=19%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccc----cCCcccCceEEEEECCEEEEEEEcCCccc---------ccccHHhhhhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQHPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAKV   88 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~----~~pt~~~~~g~i~~~~~~i~~~d~~g~~~---------~r~~~~~~~~~~   88 (109)
                      +|+++|++|||||||+++|.+.+...    ...|.....+.+...+..+..+|..|...         ....+..++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            68999999999999999999876432    11233345567777889999999877311         222334456688


Q ss_pred             CEEEEEEeCC
Q 033893           89 IGSFKTKKIE   98 (109)
Q Consensus        89 ~~~v~~~~~~   98 (109)
                      +.++.+.+.+
T Consensus        82 d~i~~~~~~~   91 (171)
T d1mkya1          82 DLVLFVVDGK   91 (171)
T ss_dssp             SEEEEEEETT
T ss_pred             cEEEEeeccc
Confidence            8887777653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=1.4e-08  Score=65.33  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc--c-cCCcccCceEEEEE-CCEEEEEEEcCCccc----ccc---cHHhhhhcCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQHPTSEELSI-GKIKFKAFDLGGHQI----ARR---VWKDYYAKVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~--~-~~pt~~~~~g~i~~-~~~~i~~~d~~g~~~----~r~---~~~~~~~~~~~   90 (109)
                      .|+|+|.+|||||||+++|.+.+..  . ...+..+..+.... ++..+.++|++|...    .+.   ....++..++.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            4899999999999999999987542  1 22233344444444 357888999988432    122   22345667888


Q ss_pred             EEEEEeCCCc
Q 033893           91 SFKTKKIEFR  100 (109)
Q Consensus        91 ~v~~~~~~~~  100 (109)
                      ++.+.+....
T Consensus        83 ~~~~~d~~~~   92 (180)
T d1udxa2          83 LLYVLDAADE   92 (180)
T ss_dssp             EEEEEETTSC
T ss_pred             hhhhcccccc
Confidence            8777776443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.79  E-value=1.6e-09  Score=69.34  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=27.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG   62 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~   62 (109)
                      +|+|+||||||||||++.+++.        ..++.|.+...
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~--------l~~~~g~~~~~   34 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER--------LGKRAIGFWTE   34 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH--------HGGGEEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhc--------CCCCcceEEEC
Confidence            6899999999999999999987        56666665543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=6.6e-09  Score=67.16  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--ccc-CCcccCceEEEEE-CCEEEEEEEcCCccc----ccccHHh---hhhcCCE
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQH-QPTQHPTSEELSI-GKIKFKAFDLGGHQI----ARRVWKD---YYAKVIG   90 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~-~pt~~~~~g~i~~-~~~~i~~~d~~g~~~----~r~~~~~---~~~~~~~   90 (109)
                      +|+|+|++|||||||+++|.+.+.  .+. ..|..+..+...+ ++..+.++|++|..+    .+.++..   ++..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            589999999999999999987653  222 2344566666665 457888999988422    2222222   3446777


Q ss_pred             EEEEEeC
Q 033893           91 SFKTKKI   97 (109)
Q Consensus        91 ~v~~~~~   97 (109)
                      ++.+.+.
T Consensus        83 i~~~v~~   89 (185)
T d1lnza2          83 IVHVIDM   89 (185)
T ss_dssp             EEEEEES
T ss_pred             hhheeee
Confidence            6665544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=2.4e-08  Score=64.28  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccccc------------ccHHh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQIAR------------RVWKD   83 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r------------~~~~~   83 (109)
                      .-+|+++|.+|+|||||+++|.+.+..  ...|  +.....+.+..++..+...|.+|.....            .....
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD   87 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHH
Confidence            457999999999999999999976531  2222  2234456788888888888887754322            23344


Q ss_pred             hhhcCCEEEEEEeCCC
Q 033893           84 YYAKVIGSFKTKKIEF   99 (109)
Q Consensus        84 ~~~~~~~~v~~~~~~~   99 (109)
                      +...+|.++.+.+...
T Consensus        88 ~~~~~dvii~v~d~~~  103 (186)
T d1mkya2          88 SIEKADVVVIVLDATQ  103 (186)
T ss_dssp             HHHHCSEEEEEEETTT
T ss_pred             HHhcCCEEEEeecccc
Confidence            5678999988888654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.68  E-value=4e-08  Score=63.53  Aligned_cols=82  Identities=16%  Similarity=0.098  Sum_probs=56.1

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcCcccc---cCCc-------ccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQPT-------QHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK   87 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~---~~pt-------~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~   87 (109)
                      .+...|+|+|..+||||||+++|.+.....   ..|+       .......+..++..+...|.+|...+..........
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            345678999999999999999999754211   1111       111223455677888888998888776666677778


Q ss_pred             CCEEEEEEeCCC
Q 033893           88 VIGSFKTKKIEF   99 (109)
Q Consensus        88 ~~~~v~~~~~~~   99 (109)
                      +++++++.+...
T Consensus        83 ~d~~ilv~d~~~   94 (179)
T d1wb1a4          83 IDLALIVVDAKE   94 (179)
T ss_dssp             CCEEEEEEETTT
T ss_pred             cccccccccccc
Confidence            999888887643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.52  E-value=2.3e-07  Score=63.42  Aligned_cols=57  Identities=23%  Similarity=0.329  Sum_probs=43.2

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc--c-cCC-cccCceEEEEECCEEEEEEEcCCcc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV--Q-HQP-TQHPTSEELSIGKIKFKAFDLGGHQ   75 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~--~-~~p-t~~~~~g~i~~~~~~i~~~d~~g~~   75 (109)
                      .+-+|+|+|.+||||||++|.|.|.+..  . ..+ |..........++..+.+.|++|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~   91 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI   91 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeeccc
Confidence            3457899999999999999999987632  2 222 2334456777899999999999954

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=6.6e-07  Score=62.12  Aligned_cols=79  Identities=18%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECC-----------------EEEEEEEcCCccc---
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGK-----------------IKFKAFDLGGHQI---   76 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~-----------------~~i~~~d~~g~~~---   76 (109)
                      -+|+|+|.++||||||++++++.+.  ...-|  |+.|+.|.+.+.+                 ..+.+.|++|.-.   
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~   90 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS   90 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccc
Confidence            4699999999999999999997643  22223  5667788887643                 3567779876322   


Q ss_pred             -cc---ccHHhhhhcCCEEEEEEeCCC
Q 033893           77 -AR---RVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        77 -~r---~~~~~~~~~~~~~v~~~~~~~   99 (109)
                       .+   .-.-...+++++++.+.+...
T Consensus        91 ~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          91 TGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccHHHHHHHhhccceeEEEEeccC
Confidence             11   123466779999999887533

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.49  E-value=2.9e-07  Score=63.43  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECCE-----------------EEEEEEcCCcc----cc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGKI-----------------KFKAFDLGGHQ----IA   77 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~~-----------------~i~~~d~~g~~----~~   77 (109)
                      +|+|||.++||||||++++++.+.  .. .-.|..|+.|.+.+.+.                 .+.+.|++|.-    +.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g   83 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKG   83 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccC
Confidence            689999999999999999997653  22 23456677788776431                 46677988842    22


Q ss_pred             ccc---HHhhhhcCCEEEEEEeC
Q 033893           78 RRV---WKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        78 r~~---~~~~~~~~~~~v~~~~~   97 (109)
                      +-+   .-...+++++++-+.+.
T Consensus        84 ~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          84 EGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             GGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             CCccHHHHHHHHhccceEEEeec
Confidence            222   23567799999988864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=1.6e-06  Score=62.70  Aligned_cols=79  Identities=11%  Similarity=0.045  Sum_probs=47.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCccc-c-cCCc--ccC--ceEEEEE-CCEEEEEEEcCCcccccccHHhh-----hh
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLV-Q-HQPT--QHP--TSEELSI-GKIKFKAFDLGGHQIARRVWKDY-----YA   86 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~-~~pt--~~~--~~g~i~~-~~~~i~~~d~~g~~~~r~~~~~~-----~~   86 (109)
                      .+-+|+|+|.+|+|||||+|+|.|.... + ..|+  .+.  +...... ++..+.+||++|......--..|     ..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            4567999999999999999999986431 1 1111  111  1112222 23457789999976544332333     44


Q ss_pred             cCCEEEEEEeC
Q 033893           87 KVIGSFKTKKI   97 (109)
Q Consensus        87 ~~~~~v~~~~~   97 (109)
                      .++.++.+.+-
T Consensus       135 ~~d~~l~~~~~  145 (400)
T d1tq4a_         135 EYDFFIIISAT  145 (400)
T ss_dssp             GCSEEEEEESS
T ss_pred             cceEEEEecCC
Confidence            67777776553

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.3e-06  Score=55.41  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCccc--ccCC-cccC-ceEEEEECCEEEEEEEcCCc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQP-TQHP-TSEELSIGKIKFKAFDLGGH   74 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p-t~~~-~~g~i~~~~~~i~~~d~~g~   74 (109)
                      +.|+|+|.+|+|||||+++|.+.+..  ...+ +... ..+....+...+..+|..+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~   63 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL   63 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCc
Confidence            45799999999999999999987642  2222 2222 23444556666666676553

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=6.9e-07  Score=57.81  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDER   44 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~   44 (109)
                      +|+|+|.+|||||||++.|.|.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            68999999999999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=1e-06  Score=61.38  Aligned_cols=77  Identities=18%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcCccc-ccCC--cccCceEEEE------------------------ECCEEEEEEEcCCc
Q 033893           22 KILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQHPTSEELS------------------------IGKIKFKAFDLGGH   74 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~p--t~~~~~g~i~------------------------~~~~~i~~~d~~g~   74 (109)
                      +|+|+|.+++|||||+++|++.+.+ ..-|  |..|+.|.+.                        .....+.+.|++|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl   81 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL   81 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCc
Confidence            5899999999999999999987531 1112  3444445432                        12256788898874


Q ss_pred             ccc----cccHH---hhhhcCCEEEEEEeCC
Q 033893           75 QIA----RRVWK---DYYAKVIGSFKTKKIE   98 (109)
Q Consensus        75 ~~~----r~~~~---~~~~~~~~~v~~~~~~   98 (109)
                      -..    +.+-.   ...+++|+++.+.+..
T Consensus        82 i~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          82 VPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------CCCSSTTCSEEEEEEETT
T ss_pred             ccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            221    11111   2356889999888753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.23  E-value=9e-07  Score=59.15  Aligned_cols=80  Identities=21%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccc-cCC--cccCceE------------------EEEECCEEEEEEEcCCcccc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQP--TQHPTSE------------------ELSIGKIKFKAFDLGGHQIA   77 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~-~~p--t~~~~~g------------------~i~~~~~~i~~~d~~g~~~~   77 (109)
                      +...|+|+|..+||||||+++|.+..... ..+  +......                  .+..++..+.+.|++|.+.+
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            44558999999999999999997643211 000  0000111                  12234567888899998776


Q ss_pred             cccHHhhhhcCCEEEEEEeCC
Q 033893           78 RRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        78 r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      -.........+|.++++.|..
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~  104 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDIN  104 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETT
T ss_pred             cccchhcccccceEEEEEecc
Confidence            554445567899999988864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=3.8e-06  Score=55.41  Aligned_cols=77  Identities=21%  Similarity=0.179  Sum_probs=53.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC---c-----cc-----ccCC-------cccCceEEEEECCEEEEEEEcCCccccccc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE---R-----LV-----QHQP-------TQHPTSEELSIGKIKFKAFDLGGHQIARRV   80 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~---~-----~~-----~~~p-------t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~   80 (109)
                      -.|+++|..++|||||+.+|...   .     ..     +..|       |.....-.+..++..+.+.|.+|..++-.-
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~   83 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN   83 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHH
Confidence            35799999999999999998521   0     00     0111       222233466778899999999998876554


Q ss_pred             HHhhhhcCCEEEEEEeC
Q 033893           81 WKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        81 ~~~~~~~~~~~v~~~~~   97 (109)
                      ...-.+.+|+++++.+.
T Consensus        84 ~~~~~~~aD~avlVvda  100 (204)
T d2c78a3          84 MITGAAQMDGAILVVSA  100 (204)
T ss_dssp             HHHHHTTCSSEEEEEET
T ss_pred             HHHHHHHCCEEEEEEEC
Confidence            44556688888887775

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=1.6e-05  Score=54.88  Aligned_cols=80  Identities=15%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHh---cC--cc---c------cc-------CCcccCceEEEEECCEEEEEEEcCCcc
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLK---DE--RL---V------QH-------QPTQHPTSEELSIGKIKFKAFDLGGHQ   75 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~---g~--~~---~------~~-------~pt~~~~~g~i~~~~~~i~~~d~~g~~   75 (109)
                      .++-| |+|+|..|||||||.-++.   |.  +.   .      ..       .-|+......+.+++..+++.|.+|..
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~   82 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV   82 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh
Confidence            44555 7999999999999999885   21  00   0      00       113334456778899999999999998


Q ss_pred             cccccHHhhhhcCCEEEEEEeC
Q 033893           76 IARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        76 ~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .+..-...-.+.+|+.|++.+-
T Consensus        83 dF~~e~~~~l~~~D~avlVvda  104 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDS  104 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEET
T ss_pred             hhHHHHHHHHHhhhheEEeccc
Confidence            8877666777889988887764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.09  E-value=1.6e-05  Score=54.65  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             EEEEeCCCCcHHHHHHHHh---cCc-----ccc-------------cCCcccCceEEEEECCEEEEEEEcCCcccccccH
Q 033893           23 ILFLGLDNAGKTTLLHMLK---DER-----LVQ-------------HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW   81 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~---g~~-----~~~-------------~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~   81 (109)
                      |+++|..|+|||||+.+|.   |..     ...             ..-|+......+.+++..+++.|.+|...+..-.
T Consensus         5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~   84 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEI   84 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhhh
Confidence            6999999999999999884   211     000             1113334456788899999999999998876665


Q ss_pred             HhhhhcCCEEEEEEeC
Q 033893           82 KDYYAKVIGSFKTKKI   97 (109)
Q Consensus        82 ~~~~~~~~~~v~~~~~   97 (109)
                      ..-.+.+|+++++.+-
T Consensus        85 ~~al~~~D~avlvvda  100 (267)
T d2dy1a2          85 RGALEAADAALVAVSA  100 (267)
T ss_dssp             HHHHHHCSEEEEEEET
T ss_pred             hhhhcccCceEEEeec
Confidence            6667789998888775

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=6.5e-07  Score=56.71  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      +..+|+|+|.+|||||||+++|.+.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~   41 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQKS   41 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            346799999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.06  E-value=1.1e-06  Score=55.26  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+|+|.|++|||||||.+.|+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999984

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.00  E-value=3.3e-06  Score=53.79  Aligned_cols=42  Identities=26%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CchHHHHHHHHHhcCCcccccE--EEEEeCCCCcHHHHHHHHhc
Q 033893            1 MFLFDWFYGILASLGLWQKEAK--ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus         1 ~~~~~~~~~~l~~v~~~~~~~~--i~lvG~~GsGKSTll~~l~g   42 (109)
                      |=+-+++..+++.+-.-...++  |+|.|++||||||+.+.|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           1 MELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4455677777777622223333  48999999999999999873

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.4e-06  Score=53.57  Aligned_cols=25  Identities=16%  Similarity=0.506  Sum_probs=21.2

Q ss_pred             cccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      +..+| +|+|++||||||+.+.|+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45665 99999999999999999743

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.8e-06  Score=53.89  Aligned_cols=19  Identities=42%  Similarity=0.572  Sum_probs=17.8

Q ss_pred             EEEEeCCCCcHHHHHHHHh
Q 033893           23 ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~   41 (109)
                      ++|+|++|||||||++.|.
T Consensus         5 i~itG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5999999999999999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=1.5e-06  Score=58.66  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...+++|+||+|||||+|.|.+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcch
Confidence            34599999999999999999865

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.95  E-value=3.1e-06  Score=53.42  Aligned_cols=19  Identities=32%  Similarity=0.459  Sum_probs=17.3

Q ss_pred             EEEEeCCCCcHHHHHHHHh
Q 033893           23 ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~   41 (109)
                      ++|+|.+|||||||+..|.
T Consensus         4 i~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            3899999999999999875

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.93  E-value=3.6e-06  Score=52.77  Aligned_cols=24  Identities=29%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             ccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++ +|.|++||||||+.+.|...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4675 89999999999999999854

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.91  E-value=1.7e-05  Score=51.27  Aligned_cols=79  Identities=16%  Similarity=0.048  Sum_probs=47.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcc--cccC--CcccCce-------------------------EEEEECCEEEEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERL--VQHQ--PTQHPTS-------------------------EELSIGKIKFKAFD   70 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~--pt~~~~~-------------------------g~i~~~~~~i~~~d   70 (109)
                      ...|+++|--++|||||+++|.+...  ....  +......                         +....++..+.+.|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            34579999999999999999987421  1100  0000000                         11111234577789


Q ss_pred             cCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           71 LGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        71 ~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      .+|...+......-.+.+|.++.+-+..
T Consensus        85 tPGh~~f~~~~~~~~~~~d~~ilvvda~  112 (195)
T d1kk1a3          85 APGHEALMTTMLAGASLMDGAILVIAAN  112 (195)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETT
T ss_pred             cchhhhhhHHhhcccccccccccccchh
Confidence            9998776554444456788888877653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.90  E-value=9.2e-07  Score=59.92  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=20.9

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +....+++|+||+|||||+|+|.+.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            3445699999999999999999976

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.90  E-value=2.8e-06  Score=53.08  Aligned_cols=21  Identities=43%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|+|++||||||+.+.|+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=2.8e-06  Score=54.53  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=19.2

Q ss_pred             cEE-EEEeCCCCcHHHHHHHHhc
Q 033893           21 AKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      |++ +|+||+|||||||.+.|..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            454 9999999999999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=9.3e-06  Score=55.57  Aligned_cols=55  Identities=22%  Similarity=0.470  Sum_probs=34.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcCcccccC--CcccCceEEEEECCEEEEEEEcCCc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQHPTSEELSIGKIKFKAFDLGGH   74 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~--pt~~~~~g~i~~~~~~i~~~d~~g~   74 (109)
                      ..-+++++|.+++|||||+|.|.+.+.....  |-..-+...+..+ ..+.+.|.+|-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~-~~~~l~DTPGi  167 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGI  167 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECC-CCeEEecCCCc
Confidence            4456899999999999999999987653333  3222233344443 44667798884

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.87  E-value=4.5e-06  Score=52.27  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -.|+|.|++||||||+.+.|+.
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=4.3e-06  Score=51.32  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .|+|+|++||||||+-+.|+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999853

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.3e-07  Score=60.20  Aligned_cols=28  Identities=21%  Similarity=0.150  Sum_probs=22.1

Q ss_pred             cCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           14 LGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        14 v~~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .+++..++-.+|+|+|||||||++.+|.
T Consensus        18 ~~i~f~~~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          18 RTFDLDELVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             EEECHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred             EEEEcCCCeEEEECCCCCCHHHHHHHHH
Confidence            3344555545899999999999999986

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.84  E-value=4.7e-06  Score=51.31  Aligned_cols=19  Identities=32%  Similarity=0.438  Sum_probs=17.4

Q ss_pred             EEEEeCCCCcHHHHHHHHh
Q 033893           23 ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~   41 (109)
                      |+|.|++||||||+.+.|.
T Consensus         5 Iii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5899999999999999885

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.84  E-value=5.5e-06  Score=51.74  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             cccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           19 KEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        19 ~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      ++|.+ .|+|++||||||+-++|+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35554 8999999999999999983

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.82  E-value=5e-06  Score=51.62  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      |+|.|++||||||+.+.|+..
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            599999999999999999843

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5.8e-06  Score=51.69  Aligned_cols=20  Identities=35%  Similarity=0.629  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |.|.|++|+|||||++.+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=8.4e-06  Score=52.58  Aligned_cols=20  Identities=40%  Similarity=0.532  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+||+||||+||++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=9.4e-06  Score=51.40  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.7e-06  Score=53.72  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.2

Q ss_pred             cEE-EEEeCCCCcHHHHHHHHhc
Q 033893           21 AKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      |++ +|+||||||||||.+.|..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            564 9999999999999998863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.71  E-value=1.2e-05  Score=51.72  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +..|+|+|++||||||+.+.|+.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34469999999999999999974

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.71  E-value=1e-05  Score=50.43  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            478899999999999999853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=1e-05  Score=52.04  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+++|++||||||+.+.|+.
T Consensus         5 i~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            59999999999999999983

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.69  E-value=1.1e-05  Score=50.61  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.1

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|++||||||+.+.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            59999999999999999863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.68  E-value=1.4e-05  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..+|+|+|++||||||+.+.|+.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999983

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=1.1e-05  Score=50.75  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+++|++||||||+-+.|+.
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588899999999999999973

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.65  E-value=6.5e-05  Score=49.07  Aligned_cols=78  Identities=19%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcCc-------cc-----ccCC-------cccCceEEEEECCEEEEEEEcCCcccccccH
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDER-------LV-----QHQP-------TQHPTSEELSIGKIKFKAFDLGGHQIARRVW   81 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~~-------~~-----~~~p-------t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~   81 (109)
                      -.|+++|--++|||||+.+|.+.-       ..     ...+       |.....-.+...+..+.+.|.+|...+-.-.
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   83 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNM   83 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHH
Confidence            358999999999999999886420       00     0001       1111112334456788888999987654433


Q ss_pred             HhhhhcCCEEEEEEeCC
Q 033893           82 KDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        82 ~~~~~~~~~~v~~~~~~   98 (109)
                      ..-.+.+|+++++.+-.
T Consensus        84 ~~~~~~aD~allVVda~  100 (196)
T d1d2ea3          84 ITGTAPLDGCILVVAAN  100 (196)
T ss_dssp             HHTSSCCSEEEEEEETT
T ss_pred             HHHHhhcCeEEEEEEcC
Confidence            34456788888877753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.4e-05  Score=51.79  Aligned_cols=20  Identities=40%  Similarity=0.584  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+||+|||||||.+.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.63  E-value=1.6e-05  Score=51.01  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +-+|+|+|++||||||+.+.|+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999973

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.5e-05  Score=51.37  Aligned_cols=20  Identities=20%  Similarity=0.482  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+||+||||+||++.|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            69999999999999998873

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=8.5e-06  Score=55.60  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh
Q 033893           21 AKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +-.+|+|+|||||||+|.+|.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            334999999999999999884

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.62  E-value=1.7e-05  Score=50.59  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999984

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.62  E-value=1.6e-05  Score=50.08  Aligned_cols=20  Identities=40%  Similarity=0.722  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+|++||||||+-+.|+.
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999973

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.9e-05  Score=50.13  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999973

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.60  E-value=2.1e-05  Score=49.44  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=17.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|++||||||+.+.|+.
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            37889999999999999974

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1e-05  Score=51.51  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             cE-EEEEeCCCCcHHHHHHHHhc
Q 033893           21 AK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      |. |.|+|++||||||+-+.|+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44 48999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=2.2e-05  Score=49.94  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999974

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.57  E-value=4.5e-05  Score=50.69  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      |+|.||+||||||+.++|++.
T Consensus        35 ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            699999999999999999865

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.57  E-value=0.0003  Score=46.65  Aligned_cols=76  Identities=21%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc---Ccccc---------------------------------cCCcccCceEEEEECCEE
Q 033893           22 KILFLGLDNAGKTTLLHMLKD---ERLVQ---------------------------------HQPTQHPTSEELSIGKIK   65 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g---~~~~~---------------------------------~~pt~~~~~g~i~~~~~~   65 (109)
                      +++++|--++|||||+.+|..   .-...                                 ...+..........++..
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~   90 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRK   90 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEE
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccceE
Confidence            479999999999999999952   10000                                 000111112234446788


Q ss_pred             EEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      +.+.|.+|...+-.-...-...+|+++++.+.
T Consensus        91 ~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda  122 (222)
T d1zunb3          91 FIIADTPGHEQYTRNMATGASTCDLAIILVDA  122 (222)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSEEEEEEET
T ss_pred             EEEEeccchhhhhhhhccccccCceEEEEecc
Confidence            88999999987755444556788988887775

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=2.3e-05  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -+|+|+|++||||||+.+.|+.
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=3.1e-05  Score=49.81  Aligned_cols=25  Identities=32%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+.. |+|+|++||||||+.+.|+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3445 499999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.55  E-value=2.2e-05  Score=49.56  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|+|++||||||+-+.|+.
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999973

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.55  E-value=2.2e-05  Score=51.56  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=17.8

Q ss_pred             EEEEeCCCCcHHHHHHHHh
Q 033893           23 ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~   41 (109)
                      |+++|+.|||||||++.|.
T Consensus         3 i~v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHH
Confidence            5899999999999999997

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=0.00011  Score=50.15  Aligned_cols=40  Identities=18%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             HHHHHHHhcCCc--ccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893            6 WFYGILASLGLW--QKEAKILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus         6 ~~~~~l~~v~~~--~~~~~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      ++.+.|..+...  +..-+|+++|.-.||||||+++|.|.++
T Consensus        10 ~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          10 RLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             HHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             HHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCc
Confidence            344555555422  4455799999999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.52  E-value=3.9e-05  Score=49.54  Aligned_cols=26  Identities=15%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+.-+|+|+|++||||||+-+.|+..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999999853

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.6e-05  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .-|+++|++||||||+.+.+..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3459999999999999998864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.7e-05  Score=49.22  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|+|++||||||..+.|+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999974

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=5.6e-05  Score=49.10  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=19.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +.-|+|-|++||||||+.+.|+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34569999999999999998874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.40  E-value=8.3e-05  Score=51.00  Aligned_cols=41  Identities=17%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcC-CcccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893            5 DWFYGILASLG-LWQKEAKILFLGLDNAGKTTLLHMLKDERL   45 (109)
Q Consensus         5 ~~~~~~l~~v~-~~~~~~~i~lvG~~GsGKSTll~~l~g~~~   45 (109)
                      ..+.+++..+. -.+.--+|+++|.-.||||||+++|.|.++
T Consensus         8 n~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_           8 NKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             HHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            34444555542 123334799999999999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.39  E-value=6.1e-05  Score=48.38  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.+ |+|+|++||||||+.+.|+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            445 589999999999999999843

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.38  E-value=0.00014  Score=47.93  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ....++|.||+|+||||+++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998843

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.0031  Score=39.76  Aligned_cols=64  Identities=30%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             HHHHHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcC-cccccCCcccCce-EEEEECCEEEEEEEc
Q 033893            6 WFYGILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE-RLVQHQPTQHPTS-EELSIGKIKFKAFDL   71 (109)
Q Consensus         6 ~~~~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~-~~~~~~pt~~~~~-g~i~~~~~~i~~~d~   71 (109)
                      .+...|.+.  ..+++. |+|-|+=||||||+.+.+... ...+.+++..|.. .+...++..+.-+|+
T Consensus        20 ~la~~l~~~--~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~~Y~~~~~~i~H~Dl   86 (158)
T d1htwa_          20 KFAEILLKL--HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDL   86 (158)
T ss_dssp             HHHHHHHHH--CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHhc--cCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEEeeccCCceEEEEEE
Confidence            344444333  235666 499999999999999988733 3333333333433 333346677777775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=6e-05  Score=52.88  Aligned_cols=21  Identities=14%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh
Q 033893           21 AKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +-.+|+|+|||||||++.+|.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            334999999999999999984

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.34  E-value=4.8e-05  Score=48.70  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -|+|-|..||||||+++.|+..
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4699999999999999999853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.0007  Score=45.29  Aligned_cols=77  Identities=13%  Similarity=0.030  Sum_probs=53.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh---cCc-------------------c------------cccCCcccCceEEEEECCEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLK---DER-------------------L------------VQHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~---g~~-------------------~------------~~~~pt~~~~~g~i~~~~~~i   66 (109)
                      -.|+++|--++|||||+.+|.   |.-                   +            .+..-|+......+.++++.+
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i   86 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV   86 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence            357999999999999998884   210                   0            001113334456677788999


Q ss_pred             EEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893           67 KAFDLGGHQIARRVWKDYYAKVIGSFKTKKI   97 (109)
Q Consensus        67 ~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~   97 (109)
                      .+-|.+|...+-.-...-.+.+|+++++.+-
T Consensus        87 ~iiDtPGH~df~~~~~~g~~~~D~ailvvda  117 (239)
T d1f60a3          87 TVIDAPGHRDFIKNMITGTSQADCAILIIAG  117 (239)
T ss_dssp             EEEECCCCTTHHHHHHHSSSCCSEEEEEEEC
T ss_pred             EEEECCCcHHHHHHHHHHHHHhCEEEEEEEC
Confidence            9999999987755555556688987777654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.31  E-value=8.9e-05  Score=51.97  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.|+.||||||++++|...
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            4899999999999999999865

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=0.00014  Score=47.94  Aligned_cols=23  Identities=39%  Similarity=0.664  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..+++.||+|+||||+.+++++.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999854

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.29  E-value=0.00023  Score=47.03  Aligned_cols=79  Identities=16%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc---Cc---------------------------c--c--ccCCcccCceEEEEECCEEE
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD---ER---------------------------L--V--QHQPTQHPTSEELSIGKIKF   66 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g---~~---------------------------~--~--~~~pt~~~~~g~i~~~~~~i   66 (109)
                      ..|+++|--++|||||+.+|..   .-                           .  .  +..-+..........++..+
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i   83 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF   83 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCcee
Confidence            4579999999999999987731   10                           0  0  00011222223455677889


Q ss_pred             EEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893           67 KAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF   99 (109)
Q Consensus        67 ~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~   99 (109)
                      .+.|.+|...+-.....-.+.+|+++++.+...
T Consensus        84 ~iiDtPGH~df~~~~~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          84 TIIDAPGHRDFVKNMITGASQADAAILVVSAKK  116 (224)
T ss_dssp             EECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             EEeeCCCcHHHHHHHHHHHHhhceEEEEEeccc
Confidence            999999998876655555667899888877643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=8.2e-05  Score=48.96  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.||+|+||||+.++++..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4799999999999999999854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=9.5e-05  Score=48.86  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -++|.||+|+||||++++++..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3699999999999999999854

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00013  Score=51.28  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ..+|+|.|++|||||||+..+.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHH
Confidence            4467999999999999999986

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00012  Score=48.57  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             CCcccccE-EEEEeCCCCcHHHHHHHHh
Q 033893           15 GLWQKEAK-ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        15 ~~~~~~~~-i~lvG~~GsGKSTll~~l~   41 (109)
                      ++..++.. ++++||+|+||||.+-.|+
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34433444 5999999999999987776

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00069  Score=47.73  Aligned_cols=81  Identities=15%  Similarity=0.081  Sum_probs=52.3

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHh---cCc---------ccccCC-------cccCceEEEEE----------------
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLK---DER---------LVQHQP-------TQHPTSEELSI----------------   61 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~---g~~---------~~~~~p-------t~~~~~g~i~~----------------   61 (109)
                      .+.-| |+|+|.-++|||||+.+|.   |.-         .....+       |+.....++.+                
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            34556 8999999999999999885   210         000001       11111222222                


Q ss_pred             CCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           62 GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        62 ~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +++.+++.|.+|...+......-.+-+|+++++.+..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~  130 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI  130 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETT
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecc
Confidence            3466888999998887776666777899999888753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9e-05  Score=48.63  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             ccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      +|++ +|-|++||||||+.+.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            5664 8889999999998888763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00013  Score=48.44  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=20.6

Q ss_pred             CCcccccE-EEEEeCCCCcHHHHHHHHh
Q 033893           15 GLWQKEAK-ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        15 ~~~~~~~~-i~lvG~~GsGKSTll~~l~   41 (109)
                      ++..+... ++++||+|+||||.+-.|+
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            33444445 4899999999999988776

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=9.7e-05  Score=47.51  Aligned_cols=20  Identities=45%  Similarity=0.634  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|-|..||||||+++.|..
T Consensus         3 I~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998873

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.19  E-value=0.00012  Score=48.01  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+++. |-+.|++|||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34555 49999999999999999863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.19  E-value=0.00015  Score=52.07  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=25.6

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhc
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+..+ ...+.|-|++.||.||||||.++.+..
T Consensus       149 ~l~~l-~~~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         149 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHH-HhhhhceEEEEcCCCCCccHHHHHHhh
Confidence            34444 356778899999999999999998874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.00011  Score=48.17  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++|.||+|+||||++++++..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4799999999999999999753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.16  E-value=0.00014  Score=47.16  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -.|+|-||+||||||+-+.|+.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3468889999999999999984

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00012  Score=47.46  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.0

Q ss_pred             cE-EEEEeCCCCcHHHHHHHHhc
Q 033893           21 AK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+ |++-|++||||||+++.|..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45 58899999999999998873

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.12  E-value=0.00093  Score=43.15  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..|+++|--.+|||||+.+|.+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEEccCCcHHHHHHHHHh
Confidence            4689999999999999999986

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00024  Score=47.91  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -+++.||+|+|||++.++++..
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            3899999999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00012  Score=46.16  Aligned_cols=26  Identities=27%  Similarity=0.264  Sum_probs=22.5

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      -++++++ .|.|++|+|||++...++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3678886 9999999999999998874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.09  E-value=0.00015  Score=48.76  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ...|++.||+|+|||++.++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345899999999999999999854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=0.00013  Score=50.48  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.-++++||+|+|||.|.++++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            345899999999999999999854

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.07  E-value=0.00019  Score=47.37  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHh
Q 033893           20 EAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +..++++||+||||||.+-.|+
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3445999999999999987765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00017  Score=46.45  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -|+|.||+||||+|+-+.|+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3588899999999999999843

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.05  E-value=0.00018  Score=47.31  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=18.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      -++|.|+.|+|||||++.+.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            46899999999999999886

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00012  Score=47.94  Aligned_cols=21  Identities=43%  Similarity=0.550  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|-|+.||||||+++.|+.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            369999999999999999985

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00019  Score=47.10  Aligned_cols=23  Identities=48%  Similarity=0.642  Sum_probs=19.8

Q ss_pred             ccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+ |++-|++||||||+.+.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            456 59999999999999999873

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00025  Score=45.12  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -|+|.|..||||||+.+.|...
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            4699999999999999999743

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00019  Score=46.79  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+++.||+|+||||++++++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3799999999999999999853

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00086  Score=45.83  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             cccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893           19 KEAKI-LFLGLDNAGKTTLLHMLKDER   44 (109)
Q Consensus        19 ~~~~i-~lvG~~GsGKSTll~~l~g~~   44 (109)
                      ++..| .++|+.++|||||++.|.+..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            34554 999999999999999999765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.98  E-value=0.00031  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..+|+|.|++|||||||+..+..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            34579999999999999998873

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.98  E-value=0.00027  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.0

Q ss_pred             cEE-EEEeCCCCcHHHHHHHHh
Q 033893           21 AKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      .+| +++||+|+||||.+-.|+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            454 899999999999988776

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00019  Score=48.04  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=19.3

Q ss_pred             cEE-EEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKI-LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i-~lvG~~GsGKSTll~~l~g~   43 (109)
                      .++ +|.|||.+||||+||.++-.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            354 99999999999999988633

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.91  E-value=0.00032  Score=46.41  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=14.8

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~   41 (109)
                      .+... ++++||+|+||||.+-.|+
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34444 4899999999999977665

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00025  Score=45.96  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      ++++++ .|.|++||||||+...++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            678886 9999999999999998864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00071  Score=46.17  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ..+..++|+|++|+|||++++.++..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHH
Confidence            34456899999999999999998843

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00038  Score=45.62  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .|+|=|..||||||+++.|+.
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            469999999999999999984

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00026  Score=46.55  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++|.||+|+||||+.++++.
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00034  Score=45.62  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+++.||+|+||||+.+.++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            379999999999999998863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00048  Score=46.61  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -++|.||+|+|||++.+++++.
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            3799999999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00034  Score=47.04  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhcC
Q 033893           22 KILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -+++.||+|+|||++.++++..
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00041  Score=46.91  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++.||+|+|||++.++++..
T Consensus        48 iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEeeCCCCCCccHHHHHHHHH
Confidence            799999999999999999853

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.74  E-value=0.00063  Score=43.88  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      ++++++ .|.|++|+|||++...++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            678887 9999999999999998873

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00043  Score=45.03  Aligned_cols=20  Identities=35%  Similarity=0.572  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      +++.||+|+||||++++++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            78999999999999999974

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0011  Score=43.19  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=21.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+..++|+|++|+|||++++.++..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            3456899999999999999988853

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.71  E-value=0.0017  Score=43.35  Aligned_cols=77  Identities=17%  Similarity=0.078  Sum_probs=41.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHh---cCcc-----------------------------c--ccCCcccCceEEEEECCEEEE
Q 033893           22 KILFLGLDNAGKTTLLHMLK---DERL-----------------------------V--QHQPTQHPTSEELSIGKIKFK   67 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~---g~~~-----------------------------~--~~~pt~~~~~g~i~~~~~~i~   67 (109)
                      .|+++|.-++|||||+.+|.   |.--                             .  +...+..........++..+.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~  105 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFS  105 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEE
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccceee
Confidence            47999999999999999883   2100                             0  000111122234455667888


Q ss_pred             EEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893           68 AFDLGGHQIARRVWKDYYAKVIGSFKTKKIE   98 (109)
Q Consensus        68 ~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~   98 (109)
                      +-|.+|...+-.....-...+|+++++.+..
T Consensus       106 ~iDtPGH~df~~~~~~g~~~aD~ailVVda~  136 (245)
T d1r5ba3         106 LLDAPGHKGYVTNMINGASQADIGVLVISAR  136 (245)
T ss_dssp             ECCCCC-----------TTSCSEEEEEEECS
T ss_pred             eecccccccchhhhhhhhhhhcceeeEEEcC
Confidence            8899887765444344456788888877654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.00048  Score=44.60  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|..||||||+.+.+..
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            59999999999999999974

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00051  Score=47.81  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -|+|.|++||||||+.+.|..
T Consensus        82 iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHH
Confidence            459999999999999988874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.67  E-value=0.0006  Score=44.49  Aligned_cols=24  Identities=33%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      .+++++ .|.|++||||||+...++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            677886 999999999999988776

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0006  Score=44.24  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      |+|.|..||||||+.+.|...
T Consensus         6 IgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEECCCcCCHHHHHHHHHHC
Confidence            599999999999999999844

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00084  Score=43.64  Aligned_cols=26  Identities=31%  Similarity=0.174  Sum_probs=22.6

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      -++++++ .|.|++|+|||++...+..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4778886 9999999999999998863

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.56  E-value=0.0009  Score=44.00  Aligned_cols=20  Identities=30%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             EEEeCCCCcHHHHHHHHhcC
Q 033893           24 LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        24 ~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+.||+|+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            45699999999999998853

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.51  E-value=0.00076  Score=43.99  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      ++++++ .|.|++|+|||++...++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            667776 9999999999999988874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.50  E-value=0.00076  Score=44.78  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++|.|||.+||||++|.+.-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            499999999999999987633

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.45  E-value=0.001  Score=47.03  Aligned_cols=25  Identities=36%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             ccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAK-ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~-i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+..+ +++.||+|+|||++.+.++.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            34445 59999999999999999984

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.38  E-value=0.00093  Score=42.84  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=20.4

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      ++++++ .|.|++|+|||++...++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            678886 999999999999986554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.00097  Score=48.43  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      .+.-|+++||+|||||-|.+.|++.
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHH
Confidence            3446999999999999999999853

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.31  E-value=0.0012  Score=43.30  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhcC
Q 033893           23 ILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.|.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            799999999999999998743

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.29  E-value=0.0013  Score=42.22  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .-+++.|++|+||||+.-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            3479999999999999887763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.26  E-value=0.0013  Score=43.82  Aligned_cols=25  Identities=12%  Similarity=0.208  Sum_probs=21.0

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      -..+|++ +|.|++|+||||++..++
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4567876 999999999999987765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.25  E-value=0.0014  Score=42.07  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .-+++.|++|+||||+...+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3479999999999999887763

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.25  E-value=0.00059  Score=47.11  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=15.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      -|+|.|.+||||||+.+.|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            469999999999999998764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.23  E-value=0.0032  Score=42.50  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=17.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      -|+|.|..|.|||||.+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            35999999999999998874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0041  Score=42.69  Aligned_cols=20  Identities=25%  Similarity=0.293  Sum_probs=17.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      -|+|-|+.|||||||...|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            35999999999999987664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0028  Score=43.62  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=25.4

Q ss_pred             HHHhcCCcc-cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           10 ILASLGLWQ-KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        10 ~l~~v~~~~-~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++-+ +++ +.+|++|+|++|+|||+|+..+..+
T Consensus        33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeec-ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            34444 444 5668999999999999999988854

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0037  Score=40.42  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +..+++.||+|+||||+.+.++.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            44589999999999999998874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.03  E-value=0.002  Score=45.51  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+.+.++++||+|+|||-|.++|+.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            4567799999999999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.00  E-value=0.0023  Score=40.72  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=17.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh
Q 033893           21 AKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .-+++.|++|+||||+.-.+.
T Consensus        16 ~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHH
Confidence            347999999999999887665

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0053  Score=42.29  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +.++++||+|+|||.|.+.|+..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            34699999999999999999853

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.97  E-value=0.0025  Score=45.45  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=19.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +..++|||++|+|||+++..++.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34479999999999999987763

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.95  E-value=0.0019  Score=45.09  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +++.+++.||+|+|||.|.+++++.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3344566899999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.93  E-value=0.00094  Score=46.06  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhc
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+.++|+|++|+||||+.+.+.+
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHH
T ss_pred             CCeEEEECCCCccHHHHHHHHHH
Confidence            45699999999999999999874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0027  Score=42.06  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=18.3

Q ss_pred             cEE-EEEeCCCCcHHHHHHHHh
Q 033893           21 AKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      +++ +|.|++|+||||++..++
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            565 899999999999998765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0087  Score=36.08  Aligned_cols=61  Identities=13%  Similarity=0.096  Sum_probs=37.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893           20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFK   93 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~   93 (109)
                      ...|.+-|++|||||||-++|.-. +      ..+.      ++..+.+.|-....++..+....-++-.++++
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~-l------~q~~------G~R~vtll~~~ni~ri~fva~e~~k~G~~~iv   66 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST-F------LQFG------GGRYYKIFEHNNKTELLSLIQDFIGSGSGLII   66 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH-H------TTSC------SCCCEEECCCTTCHHHHTTHHHHHHTTCEEEE
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH-H------HHhc------CCcceEEecCCCHHHHHHHHHHHHhcCCEEEE
Confidence            345799999999999999998622 0      1111      34455555544555555566666665555444

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0025  Score=44.33  Aligned_cols=18  Identities=44%  Similarity=0.831  Sum_probs=15.2

Q ss_pred             ccEE-EEEeCCCCcHHHHH
Q 033893           20 EAKI-LFLGLDNAGKTTLL   37 (109)
Q Consensus        20 ~~~i-~lvG~~GsGKSTll   37 (109)
                      .+.+ ++.|+||+|||||-
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4566 99999999999974

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.0028  Score=44.17  Aligned_cols=18  Identities=50%  Similarity=0.875  Sum_probs=15.2

Q ss_pred             ccEE-EEEeCCCCcHHHHH
Q 033893           20 EAKI-LFLGLDNAGKTTLL   37 (109)
Q Consensus        20 ~~~i-~lvG~~GsGKSTll   37 (109)
                      .+.+ ++.|+||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            3566 99999999999973

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.56  E-value=0.0028  Score=44.37  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -+|+|=|..||||||+++.|...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999853

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.54  E-value=0.0071  Score=39.58  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=19.6

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhc
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ++..+++.||.++|||++..+|..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            334469999999999999987764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.54  E-value=0.0043  Score=43.39  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhcC
Q 033893           21 AKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      -+|.|=|..|+||||+++.|...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            46899999999999999999853

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0084  Score=39.26  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .-+++.||+|+||||+.+.+..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHH
Confidence            3478999999999999998863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0032  Score=41.29  Aligned_cols=20  Identities=50%  Similarity=0.678  Sum_probs=18.0

Q ss_pred             EEEeCCCCcHHHHHHHHhcC
Q 033893           24 LFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        24 ~lvG~~GsGKSTll~~l~g~   43 (109)
                      +|.|-=|||||||++.+...
T Consensus         7 iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           7 LLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEESSSSSCHHHHHHHHHS
T ss_pred             EEeeCCCCCHHHHHHHHHhc
Confidence            89999999999999998754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.47  E-value=0.0034  Score=43.88  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      +|+|=|+.||||||+++.|..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC
T ss_pred             EEEEECCcCCCHHHHHHHHHH
Confidence            578999999999999999974

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.43  E-value=0.0032  Score=43.95  Aligned_cols=18  Identities=44%  Similarity=0.840  Sum_probs=15.4

Q ss_pred             ccEE-EEEeCCCCcHHHHH
Q 033893           20 EAKI-LFLGLDNAGKTTLL   37 (109)
Q Consensus        20 ~~~i-~lvG~~GsGKSTll   37 (109)
                      .+.+ ++.|+||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4556 89999999999985

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.41  E-value=0.005  Score=40.09  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q 033893           23 ILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~g   42 (109)
                      |+|.|.-||||||+.+.|..
T Consensus         4 IgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            59999999999999999963

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.29  E-value=0.0043  Score=41.84  Aligned_cols=18  Identities=33%  Similarity=0.543  Sum_probs=15.3

Q ss_pred             ccEEEEEeCCCCcHHHHH
Q 033893           20 EAKILFLGLDNAGKTTLL   37 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll   37 (109)
                      .+.++|.|+.||||||.+
T Consensus        24 ~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SSCEEEEECTTSCHHHHH
T ss_pred             CCCEEEEecCCccHHHHH
Confidence            356899999999999865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0065  Score=42.71  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++|+|.+|||||++++.+..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999987664

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0052  Score=41.50  Aligned_cols=26  Identities=27%  Similarity=0.261  Sum_probs=21.5

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      -++.+++ .+.|++|+||||+...++.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHH
Confidence            3566776 9999999999999887763

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.05  E-value=0.0087  Score=36.64  Aligned_cols=21  Identities=38%  Similarity=0.422  Sum_probs=17.0

Q ss_pred             cEE-EEEeCCCCcHHH-HHHHHh
Q 033893           21 AKI-LFLGLDNAGKTT-LLHMLK   41 (109)
Q Consensus        21 ~~i-~lvG~~GsGKST-ll~~l~   41 (109)
                      |.+ +++||-.||||| |++.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHH
Confidence            566 899999999999 666553

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.02  E-value=0.015  Score=40.08  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q 033893           22 KILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .++++||+|+|||.+.+.|+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            458999999999999999884

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.02  E-value=0.0053  Score=40.87  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=15.0

Q ss_pred             ccEEEEEeCCCCcHHHHH
Q 033893           20 EAKILFLGLDNAGKTTLL   37 (109)
Q Consensus        20 ~~~i~lvG~~GsGKSTll   37 (109)
                      .+-++|+|+.||||||.+
T Consensus        14 ~~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SSEEEECCCTTSCHHHHH
T ss_pred             CCCEEEEeeCCccHHHHH
Confidence            455789999999999864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.97  E-value=0.019  Score=38.71  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      ++..+.+.|+.++|||+++..|...
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3445699999999999999988743

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.61  E-value=0.019  Score=39.10  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+..|++|+|.+|+|||+|+..+..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            3566899999999999999888863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.24  E-value=0.014  Score=39.52  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      -++.+++ .+.|++|+||||+...+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHH
Confidence            4667887 999999999999977665

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.12  E-value=0.014  Score=39.40  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~g   42 (109)
                      ++.++| .+.|++++|||++...++.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHH
Confidence            567787 9999999999999987764

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.60  E-value=0.027  Score=34.47  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=19.2

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      .+.|.+ +++||-.|||||-|-...
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcceeEEEEEeccccHHHHHHHHHH
Confidence            457888 999999999999665443

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.023  Score=34.31  Aligned_cols=22  Identities=32%  Similarity=0.314  Sum_probs=17.4

Q ss_pred             ccEE-EEEeCCCCcHHHHHHHHh
Q 033893           20 EAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        20 ~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      +|.+ +++||-.|||||-|-...
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHH
Confidence            4677 999999999999665433

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.53  E-value=0.016  Score=34.34  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=17.6

Q ss_pred             cccEE-EEEeCCCCcHHHHHHHHh
Q 033893           19 KEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        19 ~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      ++.++ +|.+|.|||||+++-.+.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            34455 899999999999886443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.27  E-value=0.033  Score=42.18  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .+...|++.|+||||||.-.+.+.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il  107 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIM  107 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Confidence            445568999999999999888663

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.026  Score=39.47  Aligned_cols=16  Identities=31%  Similarity=0.333  Sum_probs=14.2

Q ss_pred             EEEEeCCCCcHHHHHH
Q 033893           23 ILFLGLDNAGKTTLLH   38 (109)
Q Consensus        23 i~lvG~~GsGKSTll~   38 (109)
                      ++|.|+.|+||||++.
T Consensus       166 ~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         166 SVISGGPGTGKTTTVA  181 (359)
T ss_dssp             EEEECCTTSTHHHHHH
T ss_pred             EEEEcCCCCCceehHH
Confidence            4999999999999874

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.90  E-value=0.045  Score=37.24  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHhc
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      .+..|++|+|.+|+|||+++..+..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHH
Confidence            3556799999999999999886653

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.69  E-value=0.044  Score=41.59  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .+...|++.|+||||||.-.+.+.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il  112 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVI  112 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHH
Confidence            445668999999999999887664

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.59  E-value=0.047  Score=41.55  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .+...|++.|+||||||.-.+.+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il  146 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVI  146 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHH
Confidence            445578999999999999888764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.46  E-value=0.053  Score=41.70  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=19.1

Q ss_pred             cccccEEEEEeCCCCcHHHHHHHHh
Q 033893           17 WQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        17 ~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      ..+...|++.|+||||||.-.+.+.
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il  144 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVI  144 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            3455678999999999997666443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.16  E-value=0.054  Score=41.63  Aligned_cols=32  Identities=19%  Similarity=0.137  Sum_probs=21.8

Q ss_pred             HHHhcCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893           10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      +..++.-..+...|+|.|+||||||.-.+.+.
T Consensus       111 Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il  142 (789)
T d1kk8a2         111 AYQNMVTDRENQSCLITGESGAGKTENTKKVI  142 (789)
T ss_dssp             HHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            33444333455678999999999998755443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.14  E-value=0.047  Score=36.08  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHh
Q 033893           21 AKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .-|.|.|+.|+||+++.+.|-
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            348999999999999999885

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.77  E-value=0.066  Score=40.67  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             ccccEEEEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i~lvG~~GsGKSTll~~l~   41 (109)
                      .+...|++.|+||||||.-.+.+.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il  115 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAM  115 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHH
Confidence            455678999999999999887664

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.21  E-value=0.047  Score=36.98  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             cccEEEEEeCCCCcHHHHHHHHhcC
Q 033893           19 KEAKILFLGLDNAGKTTLLHMLKDE   43 (109)
Q Consensus        19 ~~~~i~lvG~~GsGKSTll~~l~g~   43 (109)
                      +..|++|+|.+|+|||+|+..+.-.
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             CCceEeeccCCCCChHHHHHHHHhh
Confidence            5567899999999999999765533

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.56  E-value=0.13  Score=32.75  Aligned_cols=22  Identities=23%  Similarity=0.137  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHhc
Q 033893           21 AKILFLGLDNAGKTTLLHMLKD   42 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll~~l~g   42 (109)
                      ..+++.|++|+||||+...+..
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999998874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.23  E-value=0.16  Score=33.10  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=17.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      +|+|.|.-|+||||+.--|+
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            47889999999999987655

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.16  E-value=0.032  Score=32.34  Aligned_cols=19  Identities=26%  Similarity=0.170  Sum_probs=14.0

Q ss_pred             cccE-EEEEeCCCCcHHHHH
Q 033893           19 KEAK-ILFLGLDNAGKTTLL   37 (109)
Q Consensus        19 ~~~~-i~lvG~~GsGKSTll   37 (109)
                      ++++ ++|..+.|||||...
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            3455 588899999999443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.18  Score=32.90  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             ccccEE-EEEeCCCCcHHHHHHHHh
Q 033893           18 QKEAKI-LFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKSTll~~l~   41 (109)
                      .+..+| ++.|.-|+||||+--.|+
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHH
Confidence            455676 888999999999855554

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.82  E-value=0.16  Score=31.94  Aligned_cols=34  Identities=12%  Similarity=0.248  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHhcCCccc------------ccE-EEEEeCCCCcHHHH
Q 033893            3 LFDWFYGILASLGLWQK------------EAK-ILFLGLDNAGKTTL   36 (109)
Q Consensus         3 ~~~~~~~~l~~v~~~~~------------~~~-i~lvG~~GsGKSTl   36 (109)
                      +-..+.+.|++.++...            .|+ +++..++|||||.-
T Consensus         8 L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_           8 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHH
T ss_pred             cCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeeccccccccee
Confidence            34456666666666522            144 89999999999973

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.45  E-value=0.22  Score=30.75  Aligned_cols=17  Identities=24%  Similarity=0.204  Sum_probs=13.6

Q ss_pred             EEEEEeCCCCcHHHHHH
Q 033893           22 KILFLGLDNAGKTTLLH   38 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~   38 (109)
                      .+++++|.|+|||.+.-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            47788999999997533

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.98  E-value=0.081  Score=33.23  Aligned_cols=17  Identities=35%  Similarity=0.356  Sum_probs=14.3

Q ss_pred             cEEEEEeCCCCcHHHHH
Q 033893           21 AKILFLGLDNAGKTTLL   37 (109)
Q Consensus        21 ~~i~lvG~~GsGKSTll   37 (109)
                      ..+++..|.|||||+..
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            45899999999999763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.29  Score=30.17  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=16.7

Q ss_pred             EEEEEeCC-CCcHHHHHHHHh
Q 033893           22 KILFLGLD-NAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~-GsGKSTll~~l~   41 (109)
                      ++.|.|-+ |+||||+--.|+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            57899997 999999877665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.46  E-value=0.23  Score=32.34  Aligned_cols=19  Identities=26%  Similarity=0.464  Sum_probs=15.7

Q ss_pred             EEEEeCCCCcHHHHHHHHh
Q 033893           23 ILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        23 i~lvG~~GsGKSTll~~l~   41 (109)
                      +.+.|.-|+||||+--.++
T Consensus        11 i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHH
Confidence            4889999999999766554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.52  E-value=0.41  Score=31.41  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=15.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHh
Q 033893           22 KILFLGLDNAGKTTLLHMLK   41 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~~l~   41 (109)
                      +|++.|.-|+||||+.--|+
T Consensus         4 ~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46889999999999765443

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.14  E-value=0.49  Score=30.02  Aligned_cols=17  Identities=24%  Similarity=0.311  Sum_probs=14.3

Q ss_pred             EEEEEeCCCCcHHHHHH
Q 033893           22 KILFLGLDNAGKTTLLH   38 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~   38 (109)
                      .+++..++|||||...-
T Consensus        49 dvl~~a~TGsGKT~a~~   65 (212)
T d1qdea_          49 DVLAQAQSGTGKTGTFS   65 (212)
T ss_dssp             CEEEECCTTSSHHHHHH
T ss_pred             CEEeecccccchhhhhH
Confidence            48999999999997543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.11  E-value=0.097  Score=34.40  Aligned_cols=18  Identities=22%  Similarity=0.279  Sum_probs=14.5

Q ss_pred             ccccEE-EEEeCCCCcHHH
Q 033893           18 QKEAKI-LFLGLDNAGKTT   35 (109)
Q Consensus        18 ~~~~~i-~lvG~~GsGKST   35 (109)
                      .++++. ++.++.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            345664 899999999996

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.56  Score=29.54  Aligned_cols=15  Identities=27%  Similarity=0.412  Sum_probs=13.0

Q ss_pred             EEEEEeCCCCcHHHH
Q 033893           22 KILFLGLDNAGKTTL   36 (109)
Q Consensus        22 ~i~lvG~~GsGKSTl   36 (109)
                      .+++..++|||||.-
T Consensus        40 dvl~~A~TGsGKTla   54 (207)
T d1t6na_          40 DVLCQAKSGMGKTAV   54 (207)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeccccccccc
Confidence            489999999999764

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=0.41  Score=30.20  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhcCCcccc------------cE-EEEEeCCCCcHHHH
Q 033893            4 FDWFYGILASLGLWQKE------------AK-ILFLGLDNAGKTTL   36 (109)
Q Consensus         4 ~~~~~~~l~~v~~~~~~------------~~-i~lvG~~GsGKSTl   36 (109)
                      -..+.++|...+++...            |+ +++..++|+|||.-
T Consensus        11 ~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTla   56 (206)
T d1veca_          11 KRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGA   56 (206)
T ss_dssp             CHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHH
T ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccc
Confidence            34556666666665221            44 89999999999963

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=83.27  E-value=0.78  Score=31.19  Aligned_cols=30  Identities=23%  Similarity=0.172  Sum_probs=21.2

Q ss_pred             HHHHHHhcCCcccccEEEEEeCCCCcHHHHH
Q 033893            7 FYGILASLGLWQKEAKILFLGLDNAGKTTLL   37 (109)
Q Consensus         7 ~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll   37 (109)
                      +..+++++ +.-....+...|..|||||-.+
T Consensus        71 v~~~v~~~-l~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          71 VGQLVQSS-LDGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             HHHHHGGG-GGTCCEEEEEECCTTSSHHHHH
T ss_pred             hhhhhcch-hcccccceeeeeccCCcccccc
Confidence            33455555 4444556789999999999765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.52  E-value=0.54  Score=29.38  Aligned_cols=21  Identities=33%  Similarity=0.476  Sum_probs=16.1

Q ss_pred             cE-EEEE-eCCCCcHHHHHHHHh
Q 033893           21 AK-ILFL-GLDNAGKTTLLHMLK   41 (109)
Q Consensus        21 ~~-i~lv-G~~GsGKSTll~~l~   41 (109)
                      ++ |++. +..|+||||+--.|+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHH
Confidence            45 4677 678999999988765

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.62  Score=29.67  Aligned_cols=16  Identities=19%  Similarity=0.345  Sum_probs=13.6

Q ss_pred             EEEEEeCCCCcHHHHH
Q 033893           22 KILFLGLDNAGKTTLL   37 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll   37 (109)
                      .+++..++|||||-..
T Consensus        51 dvl~~a~TGsGKTlay   66 (218)
T d2g9na1          51 DVIAQAQSGTGKTATF   66 (218)
T ss_dssp             CEEEECCTTSSHHHHH
T ss_pred             CEEEEcccchhhhhhh
Confidence            4899999999998743

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.93  E-value=0.23  Score=31.78  Aligned_cols=17  Identities=18%  Similarity=0.090  Sum_probs=14.1

Q ss_pred             EEEEEeCCCCcHHHHHH
Q 033893           22 KILFLGLDNAGKTTLLH   38 (109)
Q Consensus        22 ~i~lvG~~GsGKSTll~   38 (109)
                      .++++.|.|+|||+..-
T Consensus        60 ~~~i~apTGsGKT~~~~   76 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGL   76 (237)
T ss_dssp             CEECCCCBTSCSHHHHH
T ss_pred             CEEEEecCCChHHHHHH
Confidence            47999999999997543

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.24  E-value=0.66  Score=29.73  Aligned_cols=15  Identities=20%  Similarity=0.322  Sum_probs=13.0

Q ss_pred             EEEEEeCCCCcHHHH
Q 033893           22 KILFLGLDNAGKTTL   36 (109)
Q Consensus        22 ~i~lvG~~GsGKSTl   36 (109)
                      .+++..++|||||--
T Consensus        56 dvi~~a~TGSGKTla   70 (222)
T d2j0sa1          56 DVIAQSQSGTGKTAT   70 (222)
T ss_dssp             CEEEECCTTSSHHHH
T ss_pred             CeEEEcCcchhhhhh
Confidence            489999999999863