Citrus Sinensis ID: 033897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEccccccccccEEEEEEEcccccccccccEEEEcccccccccccccEEEcccccHHHcccccccHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
EcccccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcEccccccEcccccEEcHHHcHHHHcccccccHHHHHHHHHHHHccHHHHccccccccccc
Coil and Loop (DISEMBL)
mddgddiymrswtgtiigphntvhegRIYQLKLfcdkdypekppsvrfhsrinmtcvnhetgvvepkkfglLVNWQREYTMEDILTQLKKEmaaphnrklvqppegtyf
Flexible Loop (DISEMBL)
MDDGDDIYMRswtgtiigphntvHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVnhetgvvepkkfGLLVNWQREYTMEDILTQLKKemaaphnrklvqppegtyf
Low Complexity Region (SEG)
MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Disordered region (IsUnstruct)
******IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL*********************
Disordered Region (DISOPRED)
MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMA*********P****YF
Disordered Region (DISEMBL)
MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Disordered Region (DISPRO)
****DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q9SJ44	145	Ubiquitin-conjugating enz	yes	no	1.0	0.751	0.917	8e-58
Q9SVD7	146	Ubiquitin-conjugating enz	no	no	1.0	0.746	0.908	7e-57
Q93YP0	158	Ubiquitin-conjugating enz	no	no	0.972	0.670	0.735	5e-44
Q9CAB6	159	Ubiquitin-conjugating enz	no	no	0.981	0.672	0.700	4e-42
Q54D06	138	Probable ubiquitin-conjug	yes	no	1.0	0.789	0.532	5e-33
O74983	139	Ubiquitin-conjugating enz	yes	no	1.0	0.784	0.541	6e-30
P53152	137	Ubiquitin-conjugating enz	yes	no	0.990	0.788	0.513	6e-26
Q9CZY3	147	Ubiquitin-conjugating enz	yes	no	1.0	0.741	0.449	4e-25
Q13404	147	Ubiquitin-conjugating enz	yes	no	1.0	0.741	0.449	5e-25
Q3SZ52	147	Ubiquitin-conjugating enz	yes	no	1.0	0.741	0.449	5e-25

>sp|Q9SJ44|UEV1C_ARATH Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1

 Score =  221 bits (564), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 100/109 (91%), Positives = 106/109 (97%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNH+
Sbjct: 37  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHD 96

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVV+ KKFG+L NWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct: 97  TGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. May play a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVD7|UEV1D_ARATH Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1

 Score =  218 bits (556), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 99/109 (90%), Positives = 103/109 (94%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVV+PKKFGLL NWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 98  TGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. Involved in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP0|UEV1A_ARATH Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1

 Score =  176 bits (445), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 89/106 (83%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CVN E
Sbjct: 36  MDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPE 95

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
           TGVVEP  F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Sbjct: 96  TGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. Probably not involved in the error-free DNA repair.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAB6|UEV1B_ARATH Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1

 Score =  169 bits (428), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 87/107 (81%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDD DDI M+SWTGTI+GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CVN E
Sbjct: 36  MDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPE 95

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGT 107
            GVV+P  F +L NW+RE+TMED+L QLKKEM +  NRKL QP EG 
Sbjct: 96  NGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEGN 142

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. May play a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54D06|UBE2V_DICDI Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 81/109 (74%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++  DDI + SW GTIIGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CVN +
Sbjct: 30  LESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQ 89

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+PK   +L NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Sbjct: 90  NGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138

Has no ubiquitin ligase activity on its own. The ube2v/ube2n heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Dictyostelium discoideum (taxid: 44689)

>sp|O74983|MMS2_SCHPO Ubiquitin-conjugating enzyme spm2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spm2 PE=1 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 76/109 (69%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           + + DDI +  W  TI+GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+  V+ E
Sbjct: 30  LTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGE 89

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TG V P K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Sbjct: 90  TGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138

Has a role in the DNA error-free postreplication repair (PRR) pathway. Lacks catalytic activity by itself. The ubc13/spm2 heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53152|MMS2_YEAST Ubiquitin-conjugating enzyme variant MMS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMS2 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           + D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  
Sbjct: 30  LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 89

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct: 90  TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137

Has a role in the DNA error-free postreplication repair (PRR) pathway. Lacks catalytic activity by itself. The UBC13/MMS2 heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9CZY3|UB2V1_MOUSE Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 73/109 (66%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PPSVRF +R+NM+ V+  
Sbjct: 37  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSS 96

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  ++++ IL +L++ M +  N KL QPPEG  +
Sbjct: 97  NGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEGQCY 145

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation (By similarity). Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Mus musculus (taxid: 10090)

>sp|Q13404|UB2V1_HUMAN Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 71/109 (65%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 37  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 96

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 97  NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 145

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through Lys-63. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q3SZ52|UB2V1_BOVIN Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 71/109 (65%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 37  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 96

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 97  NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 145

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
257196367	146	ubiquitin-conjugating enzyme variant [Ci	1.0	0.746	1.0	4e-60
356537146	201	PREDICTED: ubiquitin-conjugating enzyme	1.0	0.542	0.981	6e-60
315937232	146	ubiquitin-conjugating family protein [Ja	1.0	0.746	0.990	8e-60
255578603	147	ubiquitin-conjugating enzyme, putative [	1.0	0.741	0.981	1e-59
217075773	146	unknown [Medicago truncatula] gi|3884967	1.0	0.746	0.981	1e-59
449437446	146	PREDICTED: ubiquitin-conjugating enzyme	1.0	0.746	0.972	6e-59
359481634	146	PREDICTED: ubiquitin-conjugating enzyme	1.0	0.746	0.972	8e-59
388502304	146	unknown [Lotus japonicus]	1.0	0.746	0.981	1e-58
224091917	146	predicted protein [Populus trichocarpa]	1.0	0.746	0.963	2e-58
359481636	136	PREDICTED: ubiquitin-conjugating enzyme	1.0	0.801	0.972	2e-58

>gi|257196367|gb|ACV49920.1| ubiquitin-conjugating enzyme variant [Citrus sinensis]

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 98  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537146|ref|XP_003537091.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like [Glycine max]

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 107/109 (98%), Positives = 108/109 (99%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR+NMTCVNHE
Sbjct: 93  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHE 152

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFGLL NWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 153 TGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315937232|gb|ADU56174.1| ubiquitin-conjugating family protein [Jatropha curcas] gi|317159571|gb|ADV04060.1| protein binding/ubiquitin-protein ligase 1 [Hevea brasiliensis]

 Score =  233 bits (595), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 108/109 (99%), Positives = 108/109 (99%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFGLL NWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 98  TGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578603|ref|XP_002530163.1| ubiquitin-conjugating enzyme, putative [Ricinus communis] gi|223530324|gb|EEF32218.1| ubiquitin-conjugating enzyme, putative [Ricinus communis]

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/109 (98%), Positives = 108/109 (99%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGT+IGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 39  MDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 98

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFGLL NWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 99  TGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075773|gb|ACJ86246.1| unknown [Medicago truncatula] gi|388496758|gb|AFK36445.1| unknown [Medicago truncatula] gi|388520687|gb|AFK48405.1| unknown [Medicago truncatula]

 Score =  233 bits (593), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/109 (98%), Positives = 108/109 (99%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFGLL NWQREY+MEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 98  TGVVEPKKFGLLANWQREYSMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437446|ref|XP_004136503.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C-like [Cucumis sativus] gi|449526672|ref|XP_004170337.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C-like [Cucumis sativus]

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/109 (97%), Positives = 107/109 (98%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR+NMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVE KKFGLL NWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 98  TGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481634|ref|XP_003632650.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like isoform 2 [Vitis vinifera] gi|297740182|emb|CBI30364.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 106/109 (97%), Positives = 107/109 (98%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFG+L NWQREYTMEDILTQLKKEMAAP NRKLVQPPEGTYF
Sbjct: 98  TGVVEPKKFGILANWQREYTMEDILTQLKKEMAAPQNRKLVQPPEGTYF 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502304|gb|AFK39218.1| unknown [Lotus japonicus]

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/109 (98%), Positives = 107/109 (98%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKF LL NWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 98  TGVVEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091917|ref|XP_002309399.1| predicted protein [Populus trichocarpa] gi|118484540|gb|ABK94144.1| unknown [Populus trichocarpa] gi|222855375|gb|EEE92922.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/109 (96%), Positives = 107/109 (98%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGT+IGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 38  MDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFGLL NWQR+YTMEDILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 98  TGVVEPKKFGLLSNWQRDYTMEDILTQLKKEMTAPHNRKLVQPPEGTYF 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481636|ref|XP_003632651.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like isoform 3 [Vitis vinifera]

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/109 (97%), Positives = 107/109 (98%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE
Sbjct: 28  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 87

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TGVVEPKKFG+L NWQREYTMEDILTQLKKEMAAP NRKLVQPPEGTYF
Sbjct: 88  TGVVEPKKFGILANWQREYTMEDILTQLKKEMAAPQNRKLVQPPEGTYF 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2028085	158	MMZ1 "AT1G23260" [Arabidopsis	0.972	0.670	0.735	1.1e-41
TAIR|locus:2033561	159	MMZ2 "AT1G70660" [Arabidopsis	0.972	0.666	0.707	1.4e-39
DICTYBASE|DDB_G0292596	138	ube2v "putative ubiquitin-conj	1.0	0.789	0.532	8.8e-31
ASPGD|ASPL0000013615	141	AN3644 [Emericella nidulans (t	0.981	0.758	0.476	1.5e-28
POMBASE|SPCC338.05c	139	mms2 "ubiquitin conjugating en	1.0	0.784	0.541	1.9e-28
SGD|S000003055	137	MMS2 "Ubiquitin-conjugating en	0.972	0.773	0.523	1.1e-25
UNIPROTKB|Q3SZ52	147	UBE2V1 "Ubiquitin-conjugating	0.972	0.721	0.462	2.6e-24
UNIPROTKB|E2R2I5	147	UBE2V1 "Uncharacterized protei	0.972	0.721	0.462	2.6e-24
UNIPROTKB|J9P1M6	159	UBE2V1 "Uncharacterized protei	0.972	0.666	0.462	2.6e-24
UNIPROTKB|G3V2F7	370	TMEM189 "HCG2044781" [Homo sap	0.972	0.286	0.462	2.6e-24

TAIR|locus:2028085 MMZ1 "AT1G23260" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 78/106 (73%), Positives = 89/106 (83%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             MDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CVN E
Sbjct:    36 MDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPE 95

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
             TGVVEP  F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Sbjct:    96 TGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006301 "postreplication repair" evidence=IGI;RCA

GO:0031372 "UBC13-MMS2 complex" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2033561 MMZ2 "AT1G70660" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 75/106 (70%), Positives = 87/106 (82%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             MDD DDI M+SWTGTI+GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CVN E
Sbjct:    36 MDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPE 95

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
              GVV+P  F +L NW+RE+TMED+L QLKKEM +  NRKL QP EG
Sbjct:    96 NGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEG 141

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006301 "postreplication repair" evidence=IGI;RCA

GO:0031372 "UBC13-MMS2 complex" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0292596 ube2v "putative ubiquitin-conjugating enzyme E2" [Dictyostelium discoideum (taxid:44689)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 58/109 (53%), Positives = 81/109 (74%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             ++  DDI + SW GTIIGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CVN +
Sbjct:    30 LESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQ 89

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
              GVV+PK   +L NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Sbjct:    90 NGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000013615 AN3644 [Emericella nidulans (taxid:162425)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 51/107 (47%), Positives = 79/107 (73%)

Query:     3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
             DG+D+ M +W GT++GP ++VHE RIY L + C  +YP++PP+++F SR+N+ CV+  +G
Sbjct:    35 DGEDMMMSNWNGTVLGPPHSVHENRIYSLNIHCGPEYPDQPPTLQFISRVNLPCVDAHSG 94

Query:    63 VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
              V+P K   L  W+R+YTME +L +L++ MA P ++KL QPPEG+ F
Sbjct:    95 KVDPSKLPCLAQWKRDYTMETVLIELRRYMALPQHKKLPQPPEGSTF 141

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0010994 "free ubiquitin chain polymerization" evidence=IEA

GO:0006301 "postreplication repair" evidence=IEA

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

POMBASE|SPCC338.05c mms2 "ubiquitin conjugating enzyme Mms2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/109 (54%), Positives = 76/109 (69%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             + + DDI +  W  TI+GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+  V+ E
Sbjct:    30 LTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGE 89

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
             TG V P K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Sbjct:    90 TGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006301 "postreplication repair" evidence=IGI;IMP

GO:0042803 "protein homodimerization activity" evidence=IGI

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

SGD|S000003055 MMS2 "Ubiquitin-conjugating enzyme variant" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 56/107 (52%), Positives = 70/107 (65%)

Query:     3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
             D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  TG
Sbjct:    32 DSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTG 91

Query:    63 VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
              V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct:    92 EVQTD-FHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010994 "free ubiquitin chain polymerization" evidence=IDA

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=IPI

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006301 "postreplication repair" evidence=IGI;IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0000209 "protein polyubiquitination" evidence=IDA;IPI

UNIPROTKB|Q3SZ52 UBE2V1 "Ubiquitin-conjugating enzyme E2 variant 1" [Bos taurus (taxid:9913)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 49/106 (46%), Positives = 70/106 (66%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct:    37 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 96

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
              GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:    97 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142

GO:0035370 "UBC13-UEV1A complex" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E2R2I5 UBE2V1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 49/106 (46%), Positives = 70/106 (66%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct:    37 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 96

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
              GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:    97 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|J9P1M6 UBE2V1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 49/106 (46%), Positives = 70/106 (66%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct:    49 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 108

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
              GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   109 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 154

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|G3V2F7 TMEM189 "HCG2044781" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 49/106 (46%), Positives = 70/106 (66%)

Query:     1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct:   260 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 319

Query:    61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
              GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   320 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 365

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74983	MMS2_SCHPO	No assigned EC number	0.5412	1.0	0.7841	yes	no
Q54D06	UBE2V_DICDI	No assigned EC number	0.5321	1.0	0.7898	yes	no
P53152	MMS2_YEAST	No assigned EC number	0.5137	0.9908	0.7883	yes	no
Q9SJ44	UEV1C_ARATH	No assigned EC number	0.9174	1.0	0.7517	yes	no
Q9SVD7	UEV1D_ARATH	No assigned EC number	0.9082	1.0	0.7465	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	7e-18
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	6e-15
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	3e-10
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-09
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	1e-06
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-05

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 73.1 bits (180), Expect = 7e-18
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
           DD  +  W  TI GP +T +EG I++L L   +DYP KPP VRF ++I    V+  +G V
Sbjct: 31  DDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD-PSGNV 89

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
                     W   YT+E IL  L+  + +P N       E 
Sbjct: 90  CLDILKD--RWSPVYTLETILLSLQSLLLSP-NPDSPLNTEA 128

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 65.4 bits (160), Expect = 6e-15
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 9   MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV---- 64
           +  WTGTI+GP  T +EG +++L +   +DYP KPP V+F ++I    V+  +G +    
Sbjct: 27  LLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITKIYHPNVD-SSGEICLDI 85

Query: 65  -EPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 106
            + +K      W    T+E +L  L+  ++ P N       + 
Sbjct: 86  LKQEK------WSPALTLETVLLSLQSLLSEP-NPDSPLNADA 121

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 20/94 (21%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF-----HSRINMT-- 55
             +++    W GTI GP +T +EG I++L +   +DYP KPP VRF     H  ++    
Sbjct: 24  VEENLLE--WHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81

Query: 56  -CVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 88
            C++    +++         W   YT+  +L  L
Sbjct: 82  ICLS----ILKTH------GWSPAYTLRTVLLSL 105

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            D+++   W  TIIGP  T +EG +++L +   +DYP KPP V+F ++I
Sbjct: 22 VDDNLFE--WEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFTTKI 69

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 4  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 58
           ++++   WT +IIGP ++ + G ++ L +    DYP KPP V+F ++I    +N
Sbjct: 27 DENLF--RWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 16 IIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          + GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 38 MEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKI 74

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.93
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.89
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.87
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.8
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.64
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.6
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.43
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.81
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.51
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.18
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.16
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	95.96
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	95.48
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	95.05
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	94.66
smart00591	107	RWD domain in RING finger and WD repeat containing	93.83
PF06113	333	BRE: Brain and reproductive organ-expressed protei	80.58

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-44  Score=238.37  Aligned_cols=103  Identities=25%  Similarity=0.563  Sum_probs=98.8

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+. .|+||+++|.  +.|+|+++|
T Consensus        25 ~~~dnl~--~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~-~G~IclDILk--~~WsPAl~i   99 (148)
T KOG0417|consen   25 PVGDNLF--HWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS-NGRICLDILK--DQWSPALTI   99 (148)
T ss_pred             CCCCcee--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc-cccchHHhhh--ccCChhhHH
Confidence            3689999  9999999999999999999999999999999999999999999999996 9999999998  889999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +.||++|++||.+||+++|+++++|..|
T Consensus       100 ~~VllsI~sLL~~PnpddPL~~~ia~~~  127 (148)
T KOG0417|consen  100 SKVLLSICSLLSDPNPDDPLVPDIAELY  127 (148)
T ss_pred             HHHHHHHHHHhcCCCCCccccHHHHHHH
Confidence            9999999999999999999999998654

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-43  Score=238.86  Aligned_cols=101  Identities=34%  Similarity=0.614  Sum_probs=97.0

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~   83 (109)
                      ++|++  .|+++|.||.+||||||+|++.|.||++||++||+|+|.++|||||||. +|+||+++|.  ++|+|+++|++
T Consensus        32 d~~l~--~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~-~G~vCLdIL~--~~WsP~~~l~s  106 (153)
T COG5078          32 DDNLF--HWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP-SGNVCLDILK--DRWSPVYTLET  106 (153)
T ss_pred             CCcce--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC-CCCChhHHHh--CCCCccccHHH
Confidence            34888  9999999999999999999999999999999999999999999999996 9999999998  99999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           84 ILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        84 il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ||++|++||.+||.++|+|.+||+.|
T Consensus       107 ILlsl~slL~~PN~~~Pln~daa~~~  132 (153)
T COG5078         107 ILLSLQSLLLSPNPDSPLNTEAATLY  132 (153)
T ss_pred             HHHHHHHHHcCCCCCCCCChHHHHHH
Confidence            99999999999999999999998754

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-40  Score=216.19  Aligned_cols=103  Identities=27%  Similarity=0.549  Sum_probs=99.2

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      +-++|++  .|.++|+||.+|||+||+|++.|.|+++||.+||.|+|+++.||||||. +|.+|+++|.  ..|+|.|++
T Consensus        28 P~~~niM--~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya-~G~iClDiLq--NrWsp~Ydv  102 (152)
T KOG0419|consen   28 PVENNIM--EWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYA-DGSICLDILQ--NRWSPTYDV  102 (152)
T ss_pred             CCcccee--eeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCC-CCcchHHHHh--cCCCCchhH
Confidence            3468999  9999999999999999999999999999999999999999999999998 8999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ..||++||+||.+|++.+|+|.+||+.|
T Consensus       103 a~ILtsiQslL~dPn~~sPaN~eAA~Lf  130 (152)
T KOG0419|consen  103 ASILTSIQSLLNDPNPNSPANSEAARLF  130 (152)
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence            9999999999999999999999999765

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=2.1e-39  Score=221.16  Aligned_cols=102  Identities=24%  Similarity=0.459  Sum_probs=97.8

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|++|++
T Consensus        27 ~~~d~~--~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~-~G~iCl~iL~--~~W~p~~ti~  101 (152)
T PTZ00390         27 DPGNYR--HFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILK--DKWSPALQIR  101 (152)
T ss_pred             CCCCcc--EEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-CCeEECccCc--ccCCCCCcHH
Confidence            467888  9999999999999999999999999999999999999999999999997 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|.+||++|
T Consensus       102 ~iL~~i~~ll~~P~~~~pln~~aa~~~  128 (152)
T PTZ00390        102 TVLLSIQALLSAPEPDDPLDTSVADHF  128 (152)
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            999999999999999999999998764

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=3.2e-39  Score=219.13  Aligned_cols=102  Identities=25%  Similarity=0.569  Sum_probs=97.8

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.||+++|.  ++|+|++|++
T Consensus        26 ~~~nl~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~G~iCl~il~--~~W~p~~ti~  100 (147)
T PLN00172         26 SDENLF--RWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-NGSICLDILR--DQWSPALTVS  100 (147)
T ss_pred             CCCChh--eEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-CCEEEcccCc--CCCCCcCcHH
Confidence            467888  9999999999999999999999999999999999999999999999997 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|++||+.|
T Consensus       101 ~il~~i~~ll~~P~~~~p~n~~aa~~~  127 (147)
T PLN00172        101 KVLLSISSLLTDPNPDDPLVPEIARVF  127 (147)
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            999999999999999999999998754

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-39  Score=215.79  Aligned_cols=106  Identities=26%  Similarity=0.469  Sum_probs=100.5

Q ss_pred             CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC---------
Q 033897            1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL---------   71 (109)
Q Consensus         1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~---------   71 (109)
                      |.|+.|++  +|.+.|.||++|.||||.|+..+.||.+||.+||+++|.+++||||||+ +|.+|+++|..         
T Consensus        29 lvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G~vCISILH~pgdD~~gyE  105 (171)
T KOG0425|consen   29 LVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DGDVCISILHPPGDDPSGYE  105 (171)
T ss_pred             cccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CCCEEEEeecCCCCCcccCC
Confidence            46889999  9999999999999999999999999999999999999999999999998 99999999972         


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           72 --LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        72 --~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                        .+.|+|..|+++||++|.+||.+||.++|+|.+||.+|
T Consensus       106 ~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~  145 (171)
T KOG0425|consen  106 LPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW  145 (171)
T ss_pred             ChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH
Confidence              26899999999999999999999999999999998764

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-38  Score=211.24  Aligned_cols=102  Identities=24%  Similarity=0.425  Sum_probs=96.4

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      .|++  +|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||+ +|.||+++|+...+|+|+.||.+|
T Consensus        36 ~nl~--~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikqi  112 (158)
T KOG0424|consen   36 LNLM--NWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQI  112 (158)
T ss_pred             ceeE--EEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCC-CCcEehhhhccccCCCchhhHHHH
Confidence            4566  9999999999999999999999999999999999999999999999999 999999999954569999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           85 LTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        85 l~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      |.+||+||.+||..+|+|.||+..|
T Consensus       113 L~gIqdLL~~Pn~~~pAq~eA~~~~  137 (158)
T KOG0424|consen  113 LLGIQDLLDTPNITSPAQTEAYTIY  137 (158)
T ss_pred             HHHHHHHhcCCCCCCchhhHHHHHH
Confidence            9999999999999999999998654

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-37  Score=203.96  Aligned_cols=103  Identities=28%  Similarity=0.573  Sum_probs=99.2

Q ss_pred             CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      ++++||++  .|..+|.||++|+|+|-.|++.+.||.+||+.||.|+|.|+.||||||. .|.||+++|.  +.|+..++
T Consensus        52 FP~~dnlf--~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~-~GnIcLDILk--dKWSa~Yd  126 (175)
T KOG0421|consen   52 FPESDNLF--KWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL-SGNICLDILK--DKWSAVYD  126 (175)
T ss_pred             CcCcCcee--EEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc-cccchHHHHH--HHHHHHHh
Confidence            57889999  9999999999999999999999999999999999999999999999998 9999999997  99999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        81 l~~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      ++.||++||+||-+||.++|+|.-||+.
T Consensus       127 VrTILLSiQSLLGEPNn~SPLNaqAAel  154 (175)
T KOG0421|consen  127 VRTILLSIQSLLGEPNNSSPLNAQAAEL  154 (175)
T ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHH
Confidence            9999999999999999999999888753

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-36  Score=207.62  Aligned_cols=99  Identities=25%  Similarity=0.487  Sum_probs=92.4

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      +|+.  +.++.|.||+|||||||.|.++|++|++|||+||+|+|.|+||||||.+.+|.||+++|.  +.|++++||+.+
T Consensus        33 ~~~~--~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilk--d~Wa~slTlrtv  108 (200)
T KOG0418|consen   33 ENLK--EIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILK--DQWAASLTLRTV  108 (200)
T ss_pred             CChh--hceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhh--cccchhhhHHHH
Confidence            4555  889999999999999999999999999999999999999999999999989999999998  999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCC
Q 033897           85 LTQLKKEMAAPHNRKLVQPPEGT  107 (109)
Q Consensus        85 l~~i~~ll~~p~~~~~~~~~a~~  107 (109)
                      |++||++|.+|++++|+...-++
T Consensus       109 LislQalL~~pEp~dPqDavva~  131 (200)
T KOG0418|consen  109 LISLQALLCAPEPKDPQDAVVAE  131 (200)
T ss_pred             HHHHHHHHcCCCCCChHHHHHHH
Confidence            99999999999999997654443

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=1.7e-35  Score=198.72  Aligned_cols=100  Identities=27%  Similarity=0.562  Sum_probs=89.6

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      +|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.||+++|. .+.|+|++++.++
T Consensus        25 ~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~-~G~icl~~l~-~~~W~p~~~i~~i  100 (140)
T PF00179_consen   25 DNLF--EWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE-NGRICLDILN-PESWSPSYTIESI  100 (140)
T ss_dssp             TETT--EEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T-TSBBGHGGGT-TTTC-TTSHHHHH
T ss_pred             CChh--eEEEEEeccCccceecccccccccccccccccccccccccccccccccc-cccchhhhhh-cccCCcccccccH
Confidence            4888  9999999999999999999999999999999999999999999999996 9999999997 3469999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           85 LTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        85 l~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      |.+|+++|.+|+.++++|.+|++.
T Consensus       101 l~~i~~ll~~p~~~~~~n~~a~~~  124 (140)
T PF00179_consen  101 LLSIQSLLSEPNPEDPLNEEAAEL  124 (140)
T ss_dssp             HHHHHHHHHSTCTTSTSSHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcchHHHHHH
Confidence            999999999999999999988754

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=2.4e-34  Score=193.46  Aligned_cols=103  Identities=28%  Similarity=0.565  Sum_probs=96.3

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+. +|.||+++|. ..+|+|+++++
T Consensus        24 ~~~~~~--~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~-~G~icl~~l~-~~~W~p~~~l~   99 (141)
T cd00195          24 VEENLL--EWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDE-NGKICLSILK-THGWSPAYTLR   99 (141)
T ss_pred             CCCChh--EEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCC-CCCCchhhcC-CCCcCCcCcHH
Confidence            456888  9999999999999999999999999999999999999999999999996 9999999997 23499999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||.+|+++|.+|+.++++|.+|+++|
T Consensus       100 ~il~~i~~~l~~p~~~~~~n~~aa~~~  126 (141)
T cd00195         100 TVLLSLQSLLNEPNPSDPLNAEAAKLY  126 (141)
T ss_pred             HHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999999999999999999998754

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=1.6e-33  Score=190.21  Aligned_cols=101  Identities=30%  Similarity=0.590  Sum_probs=96.1

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      +|++  +|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||++ +|.+|++.|. .++|+|+++++++
T Consensus        26 ~~~~--~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~G~icl~~l~-~~~W~p~~~l~~i  101 (145)
T smart00212       26 DNLL--EWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-SGEICLDILK-QEKWSPATTLETV  101 (145)
T ss_pred             CChh--eEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-CCCEehhhcC-CCCCCCCCcHHHH
Confidence            4888  9999999999999999999999999999999999999999999999998 9999999985 3689999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           85 LTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        85 l~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      |.+|+++|.+|+.++++|++|+++|
T Consensus       102 l~~i~~~l~~p~~~~~~n~eaa~~~  126 (145)
T smart00212      102 LLSIQSLLSEPNPDSPLNADAATLY  126 (145)
T ss_pred             HHHHHHHHhCCCCCCcccHHHHHHH
Confidence            9999999999999999999998764

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.7e-32  Score=178.38  Aligned_cols=102  Identities=24%  Similarity=0.439  Sum_probs=96.8

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------   71 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-----------   71 (109)
                      +++|.|  .|.|.|.||++|+|+||.|..++.||.+||.+||+++|...++||||++ +|++|+++|-.           
T Consensus        30 ~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~-dG~VCISILHaPGDDP~~YEls  106 (165)
T KOG0426|consen   30 NEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYELS  106 (165)
T ss_pred             Ccccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccC-CCeEEEEEeeCCCCCCccchhh
Confidence            578999  9999999999999999999999999999999999999999999999998 99999999862           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 033897           72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGT  107 (109)
Q Consensus        72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~  107 (109)
                      .+.|+|..+++.||+++-++|++||.++.+|.+|..
T Consensus       107 ~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~  142 (165)
T KOG0426|consen  107 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDACK  142 (165)
T ss_pred             hhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHH
Confidence            278999999999999999999999999999988764

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.5e-32  Score=184.76  Aligned_cols=101  Identities=19%  Similarity=0.411  Sum_probs=94.7

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      +++.  +++|.+.||++||||||+++++|.+|++||++.|+|.|.++||||||+..+|.||++.++  +.|+|.+.+..|
T Consensus        27 d~m~--ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViN--QtWSp~yDL~NI  102 (189)
T KOG0416|consen   27 DGMQ--EFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVIN--QTWSPLYDLVNI  102 (189)
T ss_pred             Cccc--EEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHh--hhhhHHHHHHHH
Confidence            4466  999999999999999999999999999999999999999999999999999999999998  999999999999


Q ss_pred             HHH-HHHHhcCCCCCCCCCCCCCCCC
Q 033897           85 LTQ-LKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        85 l~~-i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +.. |-.||..||+.+|+|-+||+.|
T Consensus       103 fetfLPQLL~YPNp~DPLN~eAAal~  128 (189)
T KOG0416|consen  103 FETFLPQLLRYPNPSDPLNGEAAALY  128 (189)
T ss_pred             HHHHhHHHhcCCCCCCCcccHHHHHH
Confidence            865 6788999999999999998753

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-30  Score=171.78  Aligned_cols=102  Identities=23%  Similarity=0.445  Sum_probs=97.4

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      |+.|++  .|++.+. |.+-||..|.|+++|.||.+|||+||+|+|.|+|||||||+ .|.+|+.++. .++|+|++...
T Consensus        28 ~e~nll--~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe-~gqvClPiis-~EnWkP~T~te  102 (153)
T KOG0422|consen   28 DEANLL--KWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE-KGQVCLPIIS-AENWKPATRTE  102 (153)
T ss_pred             ccccce--eEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC-CCceeeeeee-cccccCcccHH
Confidence            678888  9999999 79999999999999999999999999999999999999998 7999999997 69999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++|+++..++.+|+++.|.+.++|.+|
T Consensus       103 qVlqaLi~liN~P~pe~plr~dlA~ey  129 (153)
T KOG0422|consen  103 QVLQALIALINDPEPEHPLRIDLAEEY  129 (153)
T ss_pred             HHHHHHHHHhcCCCccccchhhHHHHH
Confidence            999999999999999999999998765

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.8e-30  Score=175.50  Aligned_cols=101  Identities=18%  Similarity=0.344  Sum_probs=93.7

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~   83 (109)
                      .+|++..+.+++|. |.++.|+||.|.|.+.+|+.||++||+|+|+|+|||||||. .|.||+++|.  ++|+|..+|.+
T Consensus        54 ~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~GnVCLnILR--edW~P~lnL~s  129 (184)
T KOG0420|consen   54 PDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DGNVCLNILR--EDWRPVLNLNS  129 (184)
T ss_pred             CcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cchHHHHHHH--hcCccccchHH
Confidence            34555225888888 99999999999999999999999999999999999999998 9999999998  99999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           84 ILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        84 il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      |+-+++.|+.+|++++|+|-+||+.
T Consensus       130 Ii~GL~~LF~epn~eDpLN~eAA~~  154 (184)
T KOG0420|consen  130 IIYGLQFLFLEPNPEDPLNKEAAAV  154 (184)
T ss_pred             HHHHHHHHhccCCCcccccHHHHHH
Confidence            9999999999999999999999864

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-27  Score=163.78  Aligned_cols=102  Identities=21%  Similarity=0.388  Sum_probs=95.9

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      .+++|+.  ...+.|.||.||||++|+|++++.+..+||.+||+-.|+|+||||||-. +|.||.+.|.  ..|+|++.|
T Consensus        34 ~NeeD~t--diqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa-NGEICVNtLK--kDW~p~LGi  108 (223)
T KOG0423|consen   34 VNEEDFT--DIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA-NGEICVNTLK--KDWNPSLGI  108 (223)
T ss_pred             cChHHhH--HHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc-Cceehhhhhh--cccCcccch
Confidence            4566776  8889999999999999999999999999999999999999999999997 9999999997  999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +-||+.|++||..|++++.+|-+|+.+
T Consensus       109 rHvLltikCLLI~PnPESALNEeAGkm  135 (223)
T KOG0423|consen  109 RHVLLTIKCLLIEPNPESALNEEAGKM  135 (223)
T ss_pred             hhHhhhhheeeecCChHHHHhHHHHHH
Confidence            999999999999999999999888753

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-25  Score=147.09  Aligned_cols=87  Identities=16%  Similarity=0.330  Sum_probs=82.7

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      .+|+.  +|.+.+.|.+||.|+|.+|++.++||+.||++.|.|.|..++ .||+||. +|.||+++|.  +.|+|++++.
T Consensus        40 ~dnlq--qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS-NGHICL~iL~--d~WsPAmsv~  114 (161)
T KOG0427|consen   40 TDNLQ--QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS-NGHICLDILY--DSWSPAMSVQ  114 (161)
T ss_pred             ccchh--eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec-CCeEEEEeec--ccCCcchhhH
Confidence            36777  999999999999999999999999999999999999999887 8999997 9999999998  9999999999


Q ss_pred             HHHHHHHHHhcCC
Q 033897           83 DILTQLKKEMAAP   95 (109)
Q Consensus        83 ~il~~i~~ll~~p   95 (109)
                      +|.++|.+||++-
T Consensus       115 SvClSIlSMLSSs  127 (161)
T KOG0427|consen  115 SVCLSILSMLSSS  127 (161)
T ss_pred             HHHHHHHHHHccC
Confidence            9999999999863

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.2e-22  Score=143.30  Aligned_cols=89  Identities=22%  Similarity=0.361  Sum_probs=78.9

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCC-CCCCCeeeccCCCC-CCCCCCCC
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV-NHETGVVEPKKFGL-LVNWQREY   79 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv-~~~~g~ic~~~l~~-~~~W~p~~   79 (109)
                      +.++||.  +||.+|.||++|||+||.|+.+|.||++||++||.|+.+|    ||- ...+-++|+++-+- .+.|+|.|
T Consensus        29 P~p~nIL--EWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----PNGRFktntRLCLSiSDfHPdsWNP~W  102 (244)
T KOG0894|consen   29 PNPNNIL--EWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----PNGRFKTNTRLCLSISDFHPDSWNPGW  102 (244)
T ss_pred             CCcccee--eeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----CCCceecCceEEEeccccCcCcCCCcc
Confidence            4578999  9999999999999999999999999999999999999999    553 22267899999873 38999999


Q ss_pred             CHHHHHHHHHHHhcCCC
Q 033897           80 TMEDILTQLKKEMAAPH   96 (109)
Q Consensus        80 ~l~~il~~i~~ll~~p~   96 (109)
                      ++++||.++.++|.+..
T Consensus       103 sVStILtGLlSFM~e~~  119 (244)
T KOG0894|consen  103 SVSTILTGLLSFMTEDS  119 (244)
T ss_pred             cHHHHHHHHHHHHhcCC
Confidence            99999999999998643

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=6.5e-22  Score=130.39  Aligned_cols=109  Identities=52%  Similarity=0.977  Sum_probs=101.5

Q ss_pred             CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      ++|++|+.|++|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++.-..|+..+|.+.-..+....+|+.+++
T Consensus        30 l~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~  109 (138)
T KOG0896|consen   30 LEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYS  109 (138)
T ss_pred             ccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccch
Confidence            57899999999999999999999999999999999999999999999999999999998788887766655689999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        81 l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++.+|.+++.+|++..+.+.++|++++.|
T Consensus       110 ~~~vl~~lr~~m~~~eN~kl~qp~eg~~~  138 (138)
T KOG0896|consen  110 IKMVLGQLRKEMMSKENRKLPQPPEGQCF  138 (138)
T ss_pred             hhHHHHhhhHHHHHHHhhcccCCCCCCcC
Confidence            99999999999999999999999999876

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.1e-19  Score=130.74  Aligned_cols=86  Identities=28%  Similarity=0.437  Sum_probs=76.2

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCC-CCCCCeeeccCCCCC-CCCCCCCC
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV-NHETGVVEPKKFGLL-VNWQREYT   80 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv-~~~~g~ic~~~l~~~-~~W~p~~~   80 (109)
                      =+||+|  +|+.+|.||.+|-||||+|+.+|.||.+||++||.+..+|    ||- ++.+..||+++-+.. +.|.|+|+
T Consensus        35 lEdNlF--EWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGRFE~nkKiCLSISgyHPEtWqPSWS  108 (314)
T KOG0428|consen   35 LEDNLF--EWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGRFEVNKKICLSISGYHPETWQPSWS  108 (314)
T ss_pred             chhcee--eEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCceeeCceEEEEecCCCccccCcchh
Confidence            478999  9999999999999999999999999999999999999999    553 222568999998743 89999999


Q ss_pred             HHHHHHHHHHHhcC
Q 033897           81 MEDILTQLKKEMAA   94 (109)
Q Consensus        81 l~~il~~i~~ll~~   94 (109)
                      |+..|++|..+|-+
T Consensus       109 iRTALlAlIgFmPt  122 (314)
T KOG0428|consen  109 IRTALLALIGFMPT  122 (314)
T ss_pred             HHHHHHHHHccccC
Confidence            99999999999853

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.3e-16  Score=131.97  Aligned_cols=81  Identities=19%  Similarity=0.325  Sum_probs=75.3

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc--ccCCCCCCCCeeeccCCCCC-----CCCCCCCCHHHH
Q 033897           12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--NMTCVNHETGVVEPKKFGLL-----VNWQREYTMEDI   84 (109)
Q Consensus        12 w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i--~Hpnv~~~~g~ic~~~l~~~-----~~W~p~~~l~~i   84 (109)
                      .+++|.||+||||++|.|.|.+.||++||.+||.|...+.-  ++||+|. +|++|+++|+.+     +.|+|+.++.++
T Consensus       883 ~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~-~g~vc~s~l~tw~g~~~e~w~~~s~~lq~  961 (1101)
T KOG0895|consen  883 LRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE-DGKVCLSLLNTWHGRGNEVWNPSSSILQV  961 (1101)
T ss_pred             HHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-ccceehhhhccccCCCccccCcchhHHHH
Confidence            37889999999999999999999999999999999999854  7999998 999999999963     789999999999


Q ss_pred             HHHHHHHhc
Q 033897           85 LTQLKKEMA   93 (109)
Q Consensus        85 l~~i~~ll~   93 (109)
                      |.+||.|..
T Consensus       962 l~s~q~l~l  970 (1101)
T KOG0895|consen  962 LVSIQGLVL  970 (1101)
T ss_pred             HHHhhhhhc
Confidence            999999975

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.3e-15  Score=108.08  Aligned_cols=102  Identities=14%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCC--CCCCccccccccccCCCCCCCCeeeccCCCCCCCC-CCCC
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP--EKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNW-QREY   79 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP--~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W-~p~~   79 (109)
                      ...|-+  .|.++|++. .+.|+||+|+|+|.+|++||  ...|+|.|.+.++||.|.+.++.+|+.-.=  ..| +...
T Consensus        44 Syan~l--~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf--~eWRk~eh  118 (258)
T KOG0429|consen   44 SYANKL--LWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAF--PEWRKEEH  118 (258)
T ss_pred             cccccc--eEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhh--hhhhcccc
Confidence            345667  899999974 56799999999999999999  489999999999999999999999998643  669 5778


Q ss_pred             CHHHHHHHHHHHhcCCCCCCC--CCCCCCCCC
Q 033897           80 TMEDILTQLKKEMAAPHNRKL--VQPPEGTYF  109 (109)
Q Consensus        80 ~l~~il~~i~~ll~~p~~~~~--~~~~a~~~~  109 (109)
                      .|.++|.-+|..+.+|+.+..  .||||+..|
T Consensus       119 hiwqvL~ylqriF~dpd~si~kl~N~eAa~l~  150 (258)
T KOG0429|consen  119 HIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY  150 (258)
T ss_pred             HHHHHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence            999999999999999987765  599987643

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=6.4e-13  Score=110.52  Aligned_cols=90  Identities=18%  Similarity=0.326  Sum_probs=80.4

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccc---cccCCCCCCCCeeeccCCCCC-----CC
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR---INMTCVNHETGVVEPKKFGLL-----VN   74 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~---i~Hpnv~~~~g~ic~~~l~~~-----~~   74 (109)
                      ++..+.  ..+++|.||.||||++|+|.|+|.||..||..||.|.+++.   .+.||.|. +|.||+++|..+     +.
T Consensus       307 ~e~RMd--~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn-~GKVcLslLgTwtg~~~e~  383 (1101)
T KOG0895|consen  307 DEGRMD--LIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYN-DGKVCLSLLGTWTGSRREK  383 (1101)
T ss_pred             cccccc--eeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCccc-CceEEeeeeeecccccccC
Confidence            445555  78999999999999999999999999999999999999987   37999997 999999999743     67


Q ss_pred             CCCC-CCHHHHHHHHHHHhcCC
Q 033897           75 WQRE-YTMEDILTQLKKEMAAP   95 (109)
Q Consensus        75 W~p~-~~l~~il~~i~~ll~~p   95 (109)
                      |++. .++.++|.+||.++..-
T Consensus       384 wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  384 WTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             CCccccchhhhhhhhhhhhccc
Confidence            9888 89999999999999754

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.4e-09  Score=68.57  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             EEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCC
Q 033897           29 YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN   97 (109)
Q Consensus        29 ~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~   97 (109)
                      .-+.+.|+++||+.||.+|-..|+..-..-..+|.||+.+|+ .++|+.+++++.++++|..++.+-..
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-~qgwssay~Ve~vi~qiaatlVkG~~   80 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-KQGWSSAYEVERVIMQIAATLVKGGA   80 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-cccccchhhHHHHHHHHHHHhhccce
Confidence            456778999999999999999877554443448999999997 69999999999999999999987544

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.51  E-value=2e-07  Score=62.16  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             CCCEEEEEEEccCCCCCCCCcccccccc---ccCCCCCCCCeeec---cCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 033897           25 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVEP---KKFGLLVNWQREYTMEDILTQLKKEMAA   94 (109)
Q Consensus        25 egg~~~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~~g~ic~---~~l~~~~~W~p~~~l~~il~~i~~ll~~   94 (109)
                      .|+.+.++|.+|+.||..||.|....+-   +=|||+. +|.+|+   ...-  +.|.|.-.+.++|.+.+.+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~--D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVL--DPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCccc--CccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999888654   6799998 999999   5543  8999999999999999999974

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.18  E-value=1.5e-06  Score=57.30  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=48.8

Q ss_pred             CCCCCEEE--EEEEccCCCCCCCCcccccccc-----ccCCCCCCCCeeeccCCCCCCCCCC-CCCHHHHHHHHHHHhcC
Q 033897           23 VHEGRIYQ--LKLFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMAA   94 (109)
Q Consensus        23 ~yegg~~~--~~i~fp~~yP~~pP~v~f~t~i-----~Hpnv~~~~g~ic~~~l~~~~~W~p-~~~l~~il~~i~~ll~~   94 (109)
                      .|+|..|.  +.|-+|.+||.+||.+......     -+.+||. +|+|.+..|   +.|+. ..+|.+++..++..+.+
T Consensus        42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL---~~W~~~~s~L~~lv~~l~~~F~~  117 (121)
T PF05743_consen   42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYL---QNWNPPSSNLVDLVQELQAVFSE  117 (121)
T ss_dssp             CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHH---HT--TTTS-HHHHHHHHHHCCCH
T ss_pred             ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchh---ccCCCCCCCHHHHHHHHHHHHhH
Confidence            58888886  5666999999999999775322     2449998 999999988   69976 88999999888887764

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.0013  Score=50.15  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             CCCCCCCCCCEEEEE--EEccCCCCCCCCccccccc-----cccCCCCCCCCeeeccCCCCCCCCC-CCCCHHHHHHHHH
Q 033897           18 GPHNTVHEGRIYQLK--LFCDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEPKKFGLLVNWQ-REYTMEDILTQLK   89 (109)
Q Consensus        18 Gp~~t~yegg~~~~~--i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~g~ic~~~l~~~~~W~-p~~~l~~il~~i~   89 (109)
                      |---.+|.|.+|.+-  +-+.+.||..||.+.....     -.|-+||. +|.|.+..|   ..|. |+.+|..++..+.
T Consensus        57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYL---h~W~~pssdLv~Liq~l~  132 (365)
T KOG2391|consen   57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYL---HNWDPPSSDLVGLIQELI  132 (365)
T ss_pred             CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhh---ccCCCccchHHHHHHHHH
Confidence            333457888888754  4589999999999854311     14899998 999999998   5895 7788999998888


Q ss_pred             HHhcCCCC
Q 033897           90 KEMAAPHN   97 (109)
Q Consensus        90 ~ll~~p~~   97 (109)
                      +.+.++.+
T Consensus       133 a~f~~~pP  140 (365)
T KOG2391|consen  133 AAFSEDPP  140 (365)
T ss_pred             HHhcCCCc
Confidence            88876433

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=95.96  E-value=0.09  Score=34.73  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=50.7

Q ss_pred             EEC--CCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCee--eccCCC------------CCCCCCCCC
Q 033897           16 IIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV--EPKKFG------------LLVNWQREY   79 (109)
Q Consensus        16 i~G--p~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~i--c~~~l~------------~~~~W~p~~   79 (109)
                      |.|  -+.+.|.+..-.+-|.+|+.||..+|.+-+..|-..-.   .+|.+  |.+...            +...|+|..
T Consensus        29 i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~  105 (122)
T PF14462_consen   29 IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGV  105 (122)
T ss_pred             EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCC
Confidence            555  35566999999999999999999999988776532111   12333  333222            125677654


Q ss_pred             -CHHHHHHHHHHHhc
Q 033897           80 -TMEDILTQLKKEMA   93 (109)
Q Consensus        80 -~l~~il~~i~~ll~   93 (109)
                       +|.+.|..|...|.
T Consensus       106 D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen  106 DDLWTHLARVEHALA  120 (122)
T ss_pred             CcHHHHHHHHHHHHh
Confidence             78888988888775

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=95.48  E-value=0.032  Score=38.55  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=49.8

Q ss_pred             EEEEccCCCCCCCCccccccccc---cCCCCCCC-----CeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 033897           31 LKLFCDKDYPEKPPSVRFHSRIN---MTCVNHET-----GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAA   94 (109)
Q Consensus        31 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~~-----g~ic~~~l~~~~~W~p~~~l~~il~~i~~ll~~   94 (109)
                      +.|.|+.+||..+|.|.+..+-|   +||++. .     ..+|+..-. ...|.++++++.+|..|..-|..
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~-~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGP-WSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCC-HHHhhhccCHHHHHHHHHHHHHH
Confidence            66889999999999877776543   477765 5     689987654 47889999999999999988853

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=95.05  E-value=0.036  Score=37.57  Aligned_cols=66  Identities=12%  Similarity=0.181  Sum_probs=30.4

Q ss_pred             ECCCCCCCCCC----------EEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCC---CCCCCHH
Q 033897           17 IGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNW---QREYTME   82 (109)
Q Consensus        17 ~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W---~p~~~l~   82 (109)
                      .-+.||-|.|.          .|.+++.+|..||..||.+..-.-- --.-.|. +|.||++.== ..-|   .|.+.|.
T Consensus        55 sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYR-GGkIClt~HF-kPLWakN~PkfGIa  132 (161)
T PF08694_consen   55 SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYR-GGKICLTDHF-KPLWAKNVPKFGIA  132 (161)
T ss_dssp             E-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCC-CCBB---TTH-HHHHHCTTTT--HH
T ss_pred             cCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhc-CceEeeeccc-chhhhhcCCchhHH
Confidence            34677777664          3457777899999999999764311 1133565 8999997521 1234   3555555


Q ss_pred             HH
Q 033897           83 DI   84 (109)
Q Consensus        83 ~i   84 (109)
                      -.
T Consensus       133 Ha  134 (161)
T PF08694_consen  133 HA  134 (161)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=94.66  E-value=0.074  Score=33.27  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=26.4

Q ss_pred             EEEEEEEC--CCCCCCCCCEEEEEEEccCCCCCCCCccccccc
Q 033897           11 SWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   51 (109)
Q Consensus        11 ~w~~~i~G--p~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~   51 (109)
                      .+.+.+.+  ...+.-....+.+.+.||++||..+|.+...+.
T Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen   31 SLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             EEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             ceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            44555522  233444567899999999999999999987765

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=93.83  E-value=0.23  Score=30.73  Aligned_cols=27  Identities=15%  Similarity=0.376  Sum_probs=22.6

Q ss_pred             CCCEEEEEEEccCCCCCCCCccccccc
Q 033897           25 EGRIYQLKLFCDKDYPEKPPSVRFHSR   51 (109)
Q Consensus        25 egg~~~~~i~fp~~yP~~pP~v~f~t~   51 (109)
                      ....+.+.+.+|++||..+|.+.+.+.
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEECC
Confidence            345688999999999999999988763

>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins

Probab=80.58  E-value=13  Score=28.59  Aligned_cols=60  Identities=20%  Similarity=0.384  Sum_probs=41.6

Q ss_pred             CCCCCEEEEEEEccCCCCCCCCcccccc-ccccCCCCCCCCeeeccCCCCCCCCCCC--CCHHHHHHHHHHH
Q 033897           23 VHEGRIYQLKLFCDKDYPEKPPSVRFHS-RINMTCVNHETGVVEPKKFGLLVNWQRE--YTMEDILTQLKKE   91 (109)
Q Consensus        23 ~yegg~~~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~~~~g~ic~~~l~~~~~W~p~--~~l~~il~~i~~l   91 (109)
                      ||.|...+-+|.|...+|..||.+.|.. .-|+|...    .  +..|   .+|...  ..+..++..+..+
T Consensus        61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~--l~~L---~~Wd~~dp~~Ll~li~EL~~~  123 (333)
T PF06113_consen   61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----K--LPSL---VNWDPSDPNCLLNLISELRQL  123 (333)
T ss_pred             eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----h--cchh---hcCCCCCchHHHHHHHHHHHH
Confidence            5899999999999999999999999963 23666321    1  2233   678544  3555666665544

BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
2gmi_B	137	Mms2UBC13~UBIQUITIN Length = 137		5e-27
1jat_B	138	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-27
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		4e-26
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		5e-26
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		9e-26
1j74_A	145	Crystal Structure Of Mms2 Length = 145		6e-25
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		6e-25
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		7e-25
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		8e-25
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		5e-24
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-24
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-07
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-07
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-07
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		6e-07
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		9e-07
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		1e-06
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-06
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		2e-06
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-06
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		2e-06
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-06
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-06
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-06
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		2e-06
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-06
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-06
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-06
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-06
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		3e-06
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-06
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-06
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-06
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		4e-06
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		6e-06
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		6e-06
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		7e-06
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		7e-06
3jvz_A	146	E2~ubiquitin-Hect Length = 146		7e-06
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		9e-06
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		9e-06
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-05
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-05
1jas_A	152	Hsubc2b Length = 152		2e-05
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-05
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		3e-05
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-05
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-05
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		4e-05
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		4e-05
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		5e-05
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		5e-05
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		5e-05
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		1e-04
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		1e-04
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-04
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-04
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		1e-04
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-04
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		2e-04
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		2e-04
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-04
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		2e-04
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-04
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-04
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-04
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		6e-04

>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137

Iteration: 1
 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           + D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  
Sbjct: 30  LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 89
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct: 90  TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137

>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138

Iteration: 1
 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           + D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  
Sbjct: 31  LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 90
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct: 91  TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 71/109 (65%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 50  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 109
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 110 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 158

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 71/109 (65%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 60  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 119
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 120 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 168

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG I+GP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 32  LEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 91
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 92  NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 140

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ 
Sbjct: 35  LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 94
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 95  SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 143

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ 
Sbjct: 40  LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 99
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 100 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 148

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ 
Sbjct: 29  LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 88
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 89  SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 137

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score =  108 bits (270), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +N+ 
Sbjct: 30  LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 89
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           +G+V+ +   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 90  SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 138

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++  DDI + +W+ TI G   TV E RIY L +FCD +YP+ PP+V+F ++I M+CV++ 
Sbjct: 50  LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN- 108
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            G V      +L NW R YT+E IL  L++EM +  N++L QP EG  +
Sbjct: 109 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 157

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score =  105 bits (263), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++  DDI + +W+ TI G   TV E RIY L +FCD +YP+ PP+V+F ++I M+CV++ 
Sbjct: 46  LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN- 104
Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            G V      +L NW R YT+E IL  L++EM +  N++L QP EG  +
Sbjct: 105 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 153

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GD+IY   W  TI+GP  +V+EG ++ L +    DYP KPP V F +RI    +N + GV
Sbjct: 29  GDNIY--EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ-GV 85
Query: 64  VEPKKFGLLVNWQREYTMEDILTQL 88
           +      L  NW    T+  +L  +
Sbjct: 86  ICLDI--LKDNWSPALTISKVLLSI 108

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
           DGD+++   W  T+ GP +TV+E   Y+L L    DYP KPP V+F +      V+    
Sbjct: 34  DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91
Query: 63  VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN 97
           +       L  NW   Y +  IL  L+  +  P+N
Sbjct: 92  ICLDI---LKENWTASYDVRTILLSLQSLLGEPNN 123

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GD+IY   W  TI+GP  +V+EG ++ L +    +YP KPP V F +RI    +N + GV
Sbjct: 74  GDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GV 130
Query: 64  VEPKKFGLLV-NWQREYTMEDILTQL 88
           +      +L  NW    T+  +L  +
Sbjct: 131 I---CLDILKDNWSPALTISKVLLSI 153

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 12  WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
           W   I GP +T  +G  ++L L   +DYP KPP+VRF SR+    +  +  +       +
Sbjct: 36  WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDI 91
Query: 72  LVN-WQREYTMEDILTQLKKEMAAPH 96
           L N W   Y +  ILT ++  +  P+
Sbjct: 92  LQNQWSPIYDVAAILTSIQSLLCDPN 117

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLD---ALRSQWSPALTISKVLLSICSLLCDPN 116

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI 84
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 85  ---SLDILRSQWSPALTISKVLLSICSLLCDPN 114

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 35  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 92
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 93  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 122

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 37  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 95  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 124

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 45  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 103 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 132

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 26  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 84  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 113

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ + G ++ L +    DYP KPP V F ++I    +N +  +
Sbjct: 47  GDDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAI 104
Query: 64  VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAPH 96
                  +L + W    T+  +L  +   +  P+
Sbjct: 105 C----LDILKDQWSPALTISKVLLSISSLLTDPN 134

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 32  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 89
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 90  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 119

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 85  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 114

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 37  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 95  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 124

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ + G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDLFH--WQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSI 84
Query: 64  VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAPH 96
                  +L + W    T+  +L  +   +  P+
Sbjct: 85  C----LDILRDQWSPALTISKVLLSISSLLTDPN 114

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 85  ---SLDILRSQWSPALTISKVLLSICSLLCDPN 114

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 45  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 103 XLDI---LRSQWSPALTISKVLLSICSLLCDPN 132

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 30  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 88  ---SLDILRSQWSPALTISKVLLSICSLLCDPN 117

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLDI---LRSQWGPALTISKVLLSICSLLCDPN 116

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 33  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
              K   L   W    T+  +L  +   +  P+
Sbjct: 91  ---KLDILRSQWSPALTVSKVLLSICSLLCDPN 120

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
          D +DIY   W   +IGP +T++EG  ++  L   +DYP+KPP ++F S I    ++ E  
Sbjct: 29 DDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGN 86
Query: 63 V 63
          V
Sbjct: 87 V 87

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP  + ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 30  GDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 88  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 117

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
          GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP V F ++I    +N    +
Sbjct: 32  GDDLF--HWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 90  CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 119

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
          GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 26 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  T +GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 45  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 103 CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 132

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 29  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 87  CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 116

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 33  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 64  VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                  L   W    T+  +L  +   +  P+
Sbjct: 91  CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 120

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 12  WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
           W   I GP  T  E   ++L +   ++YP KPP+VRF S++    V  +  +       +
Sbjct: 36  WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSIC----LDI 91
Query: 72  LVN-WQREYTMEDILTQLKKEMAAPH 96
           L N W   Y +  ILT ++  +  P+
Sbjct: 92  LQNRWSPTYDVSSILTSIQSLLDEPN 117

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDD+Y   W  +I+GP ++ + G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 28  GDDLY--HWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNI 85
Query: 64  VEPKKFGLLVN-WQREYTMEDILTQL 88
                  +L + W    T+  +L  +
Sbjct: 86  C----LDILKDQWSPALTLSKVLLSI 107

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           GDDI+   WT TI GP ++ ++G ++ L +    DYP K P V F +++    +N + GV
Sbjct: 30  GDDIF--HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN-KNGV 86
Query: 64  VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAPHNRKLVQP 103
           +      +L + W    T+  +L  +   +  P+    + P
Sbjct: 87  I---CLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP 124

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 12  WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
           W   IIGP +T +E   ++L L  D++YP KPP V+F S +    V     +       +
Sbjct: 36  WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEIC----LDI 91
Query: 72  LVN-WQREYTMEDILTQLKKEMAAPH 96
           L N W   Y +  ILT ++     P+
Sbjct: 92  LQNRWTPTYDVASILTSIQSLFNDPN 117

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 11  SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFG 70
           +W   I GP  T  E   ++L L   ++YP KPP+V+F S++    V  +  +       
Sbjct: 35  TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC----LD 90
Query: 71  LLVN-WQREYTMEDILTQLKKEMAAPH 96
           +L N W   Y +  ILT ++  +  P+
Sbjct: 91  ILQNRWSPTYDVAAILTSIQSLLDEPN 117

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 11  SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFG 70
           +W   I GP  T  E   ++L L   ++YP KPP+V+F S++    V  +  +       
Sbjct: 38  TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC----LD 93
Query: 71  LLVN-WQREYTMEDILTQLKKEMAAPH 96
           +L N W   Y +  ILT ++  +  P+
Sbjct: 94  ILQNRWSPTYDVAAILTSIQSLLDEPN 120

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 12  WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
           W G I GP  T +EG  + L +    DYP  PP ++F ++I    ++ +TG +      +
Sbjct: 55  WVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI---CLDV 111
Query: 72  LVN-WQREYTMEDILTQLKKEMAAPH 96
           L N W    T+   L  ++  ++ P 
Sbjct: 112 LKNEWSPALTIRTALLSIQALLSDPQ 137

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--------NM 54
           D +D+Y   W   IIGP +T++EG +++  L   KDYP +PP ++F + I          
Sbjct: 43  DDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGD 100
Query: 55  TCVN--HETGVVEPKKFGLLV---NWQREYTMEDILTQLKKEMAAPH 96
            C++  HE G     K+G       W   +T+E I+  +   +A P+
Sbjct: 101 VCISILHEPG---EDKYGYEKPEERWLPIHTVETIMISVISMLADPN 144

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 4   GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
           G DI+   W G I GP  T +EG  + L +    DYP  PP ++F ++I    ++ +TG 
Sbjct: 71  GGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA 128
Query: 64  VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAP 95
           +      +L + W    T+   L  ++  +A P
Sbjct: 129 I---CLDILKHEWSPALTIRTALLSIQAMLADP 158

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6   DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
           D  +R +  TI GP  + +E  I++L+L+   DYP + P VRF ++I    ++    +  
Sbjct: 29  DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRI-- 86
Query: 66  PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                L  NW     +  +L  ++  +A+P+
Sbjct: 87  -SLDVLKTNWSPALQIRTVLLSIQALLASPN 116

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6   DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
           D  +R +  TI GP  + +E  I++L+L+   DYP + P VRF ++I    ++    +  
Sbjct: 29  DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRI-- 86
Query: 66  PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                L  NW     +  +L  ++  +A+P+
Sbjct: 87  -SLDVLKTNWSPALQIRTVLLSIQALLASPN 116

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 1  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
          +D+GD   + +W   I GP NT +EG  ++ +L    DYP  PP+ RF +++    + +E
Sbjct: 29 VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YE 84
Query: 61 TGVV 64
          TG V
Sbjct: 85 TGDV 88

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 1  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
          +D+GD   + +W   I GP NT +EG  ++ +L    DYP  PP+ RF +++    + +E
Sbjct: 32 VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YE 87
Query: 61 TGVV 64
          TG V
Sbjct: 88 TGDV 91

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6   DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
           D  +R +  TI GP  + +E  I++L+L+   DYP + P VRF ++I    ++    +  
Sbjct: 31  DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC- 89
Query: 66  PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                L  NW     +  +L  ++  +A+P+
Sbjct: 90  --LDVLKTNWSPALQIRTVLLSIQALLASPN 118

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6   DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
           D  +R +  TI GP  + +E  I++L+L+   DYP + P VRF ++I    ++    +  
Sbjct: 29  DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC- 87
Query: 66  PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
                L  NW     +  +L  ++  +A+P+
Sbjct: 88  --LDVLKTNWSPALQIRTVLLSIQALLASPN 116

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
          G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 45 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 3   DGDDIYMRSWTGTIIGPHNTVH--EGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           D D IY  +W   +  P ++V+   G  YQL +    DYP +PP+VRF + +    V  E
Sbjct: 45  DTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGE 102
Query: 61  TGVVE 65
            G+ +
Sbjct: 103 GGICD 107

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 10 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          R +   I GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 94  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 10 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          R +   I GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
          G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 43 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
          G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 42 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 58  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 9  MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
          +R W    +G  NT++   +Y+LK+    DYP KPP V F
Sbjct: 35 IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYF 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	3e-44
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	8e-44
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	7e-42
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	3e-41
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-13
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-13
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-13
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	1e-13
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-13
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	2e-13
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	2e-13
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	3e-13
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	3e-13
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-13
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	4e-13
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	5e-13
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	5e-13
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	6e-13
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	6e-13
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	6e-13
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	7e-13
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	7e-13
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	7e-13
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	7e-13
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-12
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-12
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	2e-12
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-12
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	3e-12
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	4e-12
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	4e-12
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	4e-12
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	5e-12
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	6e-12
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	8e-12
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	9e-12
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-11
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-11
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-11
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	4e-11
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	5e-11
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	7e-11
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	8e-11
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	6e-10
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-09
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-09
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	5e-09
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	7e-09
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	7e-09
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-06

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  140 bits (355), Expect = 3e-44
 Identities = 49/109 (44%), Positives = 71/109 (65%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 60  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 119

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 120 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 168

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  139 bits (351), Expect = 8e-44
 Identities = 49/109 (44%), Positives = 71/109 (65%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 50  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 109

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 110 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 158

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  133 bits (336), Expect = 7e-42
 Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           + D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  
Sbjct: 31  LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 90

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct: 91  TGEVQT-DFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  132 bits (334), Expect = 3e-41
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++  DDI + +W+ TI G   TV E RIY L +FCD +YP+ PP+V+F ++I M+CV+  
Sbjct: 46  LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD-N 104

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            G V      +L NW R YT+E IL  L++EM +  N++L QP EG  +
Sbjct: 105 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 153

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
            ++       G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG
Sbjct: 33 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            ++       G I GP +T +EG  YQL++   + YP  PP VRF ++I
Sbjct: 36 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 83

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          DGD+++   W  T+ GP +TV+E   Y+L L    DYP KPP V+F +  
Sbjct: 34 DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC 81

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           + D+++   W GTI G   TV+E   Y+L L     YP   P+V+F +  
Sbjct: 55  ESDNLF--KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC 102

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            GD+IY   W  TI+GP  +V+EG ++ L +    +YP KPP V F +RI
Sbjct: 73  KGDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI 120

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 60.8 bits (148), Expect = 2e-13
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 2  DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 51
             + I    W   + G   T++EG  +QL       YP   P V F   
Sbjct: 48 SVQNSIT--QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 20/93 (21%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNH 59
             +D+    W   I G  N+V +G ++QL +    +Y   PP V+F +     N   V+ 
Sbjct: 48  VSEDMM--EWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN---VDP 102

Query: 60  ETGVV------EPKKFGLLVNWQREYTMEDILT 86
            TG         P+K      W   YT+  IL 
Sbjct: 103 HTGQPCIDFLDNPEK------WNTNYTLSSILL 129

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          + +D+       TI GP  T + G ++++KL   KD+P  PP   F ++I
Sbjct: 38 NEEDLT--DLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 60.4 bits (147), Expect = 3e-13
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
             +I    W    +G  NT++   +Y++K+    +YP KPP V F  + 
Sbjct: 45 HPSNIR--IWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKP 92

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            ++I    W    +G  NT++   +Y+LK+    DYP KPP V F  + 
Sbjct: 31 HPNNIR--IWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKP 78

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
             ++       G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG
Sbjct: 85  VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142

Query: 63  VV 64
            +
Sbjct: 143 AI 144

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 60.4 bits (147), Expect = 5e-13
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           GDD++   W  TI+GP ++ + G ++ L +    DYP KPP V F ++I
Sbjct: 46 VGDDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKI 93

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 59.9 bits (146), Expect = 5e-13
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           GDD++   W  TI+GP  + ++G ++ L +    DYP KPP V F +RI
Sbjct: 29 VGDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 76

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 60.0 bits (146), Expect = 6e-13
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D  +     +   I GP ++  EG  ++L+LF  ++YP   P VRF ++I
Sbjct: 30 DESNAR--YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 77

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 59.9 bits (146), Expect = 6e-13
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            ++     +   I GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 26 VPENYR--HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 22/102 (21%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF---------HSRIN 53
              +I    W   + GP  T +EG  Y  KL   +++P KPPS+           ++R+ 
Sbjct: 39  LPSNIL--EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLC 96

Query: 54  MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
           ++  +                W   +++  ILT L   M   
Sbjct: 97  LSITDF-----------HPDTWNPAWSVSTILTGLLSFMVEK 127

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
             + +   W G I GP  T +EG  + L +    DYP  PP ++F ++I
Sbjct: 48 KDSNFF--EWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKI 95

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 60.0 bits (146), Expect = 7e-13
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            D++    +  TI GP  + +E  I++L+L+   DYP + P VRF ++I
Sbjct: 30 HDDNLR--YFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI 77

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 60.0 bits (146), Expect = 7e-13
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI
Sbjct: 44 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 60.6 bits (147), Expect = 7e-13
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            G DI+   W G I GP  T +EG  + L +    DYP  PP ++F ++I
Sbjct: 70  VGGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI 117

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNH 59
          +        +     GP+ T +EG I+++ +    DYP   PS+ F +++   N   V+ 
Sbjct: 24 NNGSTQ--DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN---VDE 78

Query: 60 ETGVV 64
           +G V
Sbjct: 79 ASGSV 83

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            ++I    W   I GP +T  +G  ++L L   +DYP KPP+VRF SR+
Sbjct: 29 QDNNIM--LWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM 76

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            D++    W   IIGP +T +E   ++L L  D++YP KPP V+F S +
Sbjct: 29 LPDNVM--VWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM 76

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D D +        I+G  NT +E  +++L++   + YP +PP +RF + I
Sbjct: 29 DKDQMD--DLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI 76

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 9  MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVV 64
          +  +     GP  T +E   + L +    DYP K PS+ F +RI   N   V+  +G V
Sbjct: 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN---VDERSGSV 92

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 58.6 bits (142), Expect = 4e-12
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 9  MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          +  +     GP  T +EG ++++++     YP K PS+ F ++I
Sbjct: 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI 93

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           +  +    GT +GP  T +EG  + + +    +YP KPP ++F +++
Sbjct: 27 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV 74

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 58.1 bits (141), Expect = 4e-12
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 2  DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D G D+   +W   I G   T  EG +Y+L +   ++YP +PP  RF   +
Sbjct: 39 DGGLDLM--NWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 59.5 bits (144), Expect = 5e-12
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI
Sbjct: 28 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 57.3 bits (139), Expect = 6e-12
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 2  DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
               + ++ W   I G   T   G +Y + +    +YP KPP V+F +  
Sbjct: 31 KADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGF 81

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 57.9 bits (140), Expect = 8e-12
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
            +  +    GT +GP  T +EG  + + +    +YP KPP ++F +++    ++  TG +
Sbjct: 28  SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87

Query: 65  EPKKFGLLV---NWQREYTMEDILTQLKKEMAAP 95
                 L +    W    T++  L  L+  + +P
Sbjct: 88  -----CLDILRNAWSPVITLKSALISLQALLQSP 116

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 56.9 bits (138), Expect = 9e-12
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 1  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           +    + + +W   I G   T  EG +++L++    DYP  PP  +F   +
Sbjct: 33 KNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL 84

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          DD  +  W   IIGP +T++EG +++  L   KDYP +PP ++F + I
Sbjct: 43 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          + ++ +   W   I+GP +T  E  ++   L    DYP  PP +RF   +
Sbjct: 29 NEENFF--EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEM 76

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D  D+Y  +W   I GP NT +EG  ++ +L    DYP  PP+ RF +++
Sbjct: 33 DEGDLY--NWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 80

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 55.4 bits (134), Expect = 4e-11
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
           +  +  W   I GP +T +   ++  KL   KDYP  PP + F   I
Sbjct: 30 SENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI 77

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 55.5 bits (134), Expect = 5e-11
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF-HSRI---NMTCVN 58
           D  D+    W   I GP +T +E   +++ +     YP  PP + F  + I   N   V 
Sbjct: 43  DETDLS--KWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCN---VK 97

Query: 59  HETGVV 64
             TG +
Sbjct: 98  SATGEI 103

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 3  DGDDIYMRSWTGTIIGPHNTV--HEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D D IY  +W   +  P ++V    G  YQL +    DYP +PP+VRF + +
Sbjct: 45 DTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 56.2 bits (135), Expect = 8e-11
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNH 59
           D +   +      I GP +T +    ++  ++  +DYP  PP V   +    +   +
Sbjct: 105 DEER--LDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 52.4 bits (126), Expect = 6e-10
 Identities = 11/51 (21%), Positives = 17/51 (33%)

Query: 2   DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            D  D         I+ P    +        L  ++ YP +PP V    +I
Sbjct: 55  PDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKI 105

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D DD+   ++   I  P    ++   +       + YP  PP V+  + +
Sbjct: 30 DPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 76

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 4  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
            +          + P    ++G  +Q +      Y   PP V+  ++I
Sbjct: 40 DPNKLH--CFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D DD+   ++   I  P    ++   +       + YP  PP V+  + +
Sbjct: 50 DPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 96

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 49.2 bits (118), Expect = 7e-09
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          D+  + +W G I  P N  ++   +++++    +YP KPP + F ++I
Sbjct: 28 DEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI 74

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 49.2 bits (118), Expect = 7e-09
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
          DD  +  W   +  P    +  + + L++    +YP KPP ++F ++I
Sbjct: 30 DDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI 76

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 19/120 (15%)

Query: 3   DGDDIYMRSWTGTIIGP------------HNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
             D +Y   W   +                          L      ++P  PP VR   
Sbjct: 55  INDSLY--DWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL 112

Query: 51  RINMTCVNHETGVVEPKKFGLLV--NWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY 108
            +         G +      LL    W   Y++E ++ Q+   +     R      +  Y
Sbjct: 113 PVLSGGYVLGGGAL---CMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQY 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.98
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.89
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.79
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.6
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.53
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	94.81
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	93.64
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	93.22
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	92.94
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	91.1
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	91.07
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	89.81
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	87.77

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=2.7e-40  Score=223.65  Aligned_cols=102  Identities=23%  Similarity=0.442  Sum_probs=97.2

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        26 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  100 (149)
T 2r0j_A           26 VPENYR--HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILK--DKWSPALQIR  100 (149)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTSCHH
T ss_pred             CCCccc--EEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-CCEEechhcC--CCCCCCCcHH
Confidence            457888  9999999999999999999999999999999999999999999999998 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||.+|
T Consensus       101 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  127 (149)
T 2r0j_A          101 TVLLSIQALLSSPEPDDPLDSKVAEHF  127 (149)
T ss_dssp             HHHHHHHHHHHSCCTTSCSSCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999999999999999999998643

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.8e-39  Score=224.25  Aligned_cols=104  Identities=28%  Similarity=0.489  Sum_probs=85.7

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------   71 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-----------   71 (109)
                      +++|++  +|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..           
T Consensus        43 ~~~nl~--~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~-~G~IClsiL~~~~~d~~~~~~~  119 (172)
T 2awf_A           43 DDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKP  119 (172)
T ss_dssp             STTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCBBCCGGGSCC---------C
T ss_pred             CCcccc--ccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCC-CCcEehhhcCCccccccccccc
Confidence            557999  9999999999999999999999999999999999999999999999998 89999999962           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      .++|+|+++|++||++|++||.+|++++|+|++||++|
T Consensus       120 ~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~  157 (172)
T 2awf_A          120 EERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEW  157 (172)
T ss_dssp             TTSCCTTCCHHHHHHHHHHHHSCC--------------
T ss_pred             CCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHH
Confidence            26899999999999999999999999999999999876

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=4.6e-40  Score=226.15  Aligned_cols=102  Identities=25%  Similarity=0.581  Sum_probs=97.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        46 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~-~G~ICL~iL~--~~WsP~~ti~  120 (166)
T 2ayv_A           46 VGDDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS-QGAICLDILK--DQWSPALTIS  120 (166)
T ss_dssp             CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             cCCCcc--eeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCC-CCeEEccccc--ccCCCCCcHH
Confidence            567899  9999999999999999999999999999999999999999999999997 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||.+|
T Consensus       121 ~vL~sI~sll~~pn~~~Pln~~aa~l~  147 (166)
T 2ayv_A          121 KVLLSISSLLTDPNPDDPLVPEIAHLY  147 (166)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence            999999999999999999999988643

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=6.1e-40  Score=223.39  Aligned_cols=102  Identities=30%  Similarity=0.589  Sum_probs=98.0

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        34 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  108 (156)
T 2e2c_A           34 DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILK--ENWTASYDVR  108 (156)
T ss_dssp             SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCCcc--EEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCcc-CceEECcccc--ccCCCCCcHH
Confidence            567899  9999999999999999999999999999999999999999999999998 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       109 ~vL~si~~ll~~pn~~~p~n~~aa~~~  135 (156)
T 2e2c_A          109 TILLSLQSLLGEPNNASPLNAQAADMW  135 (156)
T ss_dssp             HHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence            999999999999999999999998754

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-40  Score=224.82  Aligned_cols=102  Identities=22%  Similarity=0.441  Sum_probs=95.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        30 ~~~~l~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  104 (154)
T 2c2v_B           30 DESNAR--YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILK--DKWSPALQIR  104 (154)
T ss_dssp             CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCBBCCHHHH--TSCCTTCCHH
T ss_pred             CCCchh--eEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc-CCeEEchhcc--CCCCCCCcHH
Confidence            457898  9999999999999999999999999999999999999999999999997 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       105 ~vl~~i~~ll~~pn~~~p~n~~aa~~~  131 (154)
T 2c2v_B          105 TVLLSIQALLSAPNPDDPLANDVAEQW  131 (154)
T ss_dssp             HHHHHHHHHTTSCCCCCC--CHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999998653

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=6.2e-40  Score=219.51  Aligned_cols=99  Identities=49%  Similarity=0.953  Sum_probs=94.5

Q ss_pred             CCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCee--eccCCCCCCCCCCCCCHHH
Q 033897            6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV--EPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         6 d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~i--c~~~l~~~~~W~p~~~l~~   83 (109)
                      |++  +|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||+.++|.|  |+++|   ++|+|+++|++
T Consensus        38 nl~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l---~~W~p~~~i~~  112 (138)
T 1jat_B           38 TMT--KWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL---RDWKRAYTMET  112 (138)
T ss_dssp             TCC--EEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHH---HTCCTTCCHHH
T ss_pred             cce--EEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeecccC---CCCCCcCcHHH
Confidence            577  999999999999999999999999999999999999999999999999855999  89887   47999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           84 ILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        84 il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ||++|++||.+|++++++|++||++|
T Consensus       113 vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B          113 LLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             HHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             HHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            99999999999999999999999987

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=5.4e-40  Score=222.65  Aligned_cols=102  Identities=26%  Similarity=0.558  Sum_probs=97.8

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        29 ~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  103 (151)
T 4gpr_A           29 VGDDIF--HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGVICLDILK--DQWSPALTLS  103 (151)
T ss_dssp             SSSCTT--EEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             cCCCce--EEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC-CCEEEccccc--CCCCCCCcHH
Confidence            457899  9999999999999999999999999999999999999999999999997 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|++||++|
T Consensus       104 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  130 (151)
T 4gpr_A          104 RVLLSISSLLTDPNPSDPLDPEVANVL  130 (151)
T ss_dssp             HHHHHHHHHHHCCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence            999999999999999999999998653

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4.4e-40  Score=225.81  Aligned_cols=104  Identities=22%  Similarity=0.360  Sum_probs=97.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------   71 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-----------   71 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..           
T Consensus        30 ~~~~l~--~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~-~G~iCl~iL~~~~~~~~~~~~~  106 (165)
T 2ucz_A           30 SENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELA  106 (165)
T ss_dssp             SSSCCS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT-TSBBCCGGGSCCCSCTTSTTTT
T ss_pred             CCCCcc--EEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCC-CCcEeehhhCCccccccccCCC
Confidence            457899  9999999999999999999999999999999999999999999999998 89999999931           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      .++|+|+++|++||++|++||.+|++++|+|++||++|
T Consensus       107 ~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~  144 (165)
T 2ucz_A          107 EERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW  144 (165)
T ss_dssp             TTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            38999999999999999999999999999999998653

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=3e-40  Score=223.37  Aligned_cols=103  Identities=21%  Similarity=0.407  Sum_probs=97.3

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        27 ~~~~l~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~--~~W~p~~~i~  102 (149)
T 1fxt_A           27 SESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVITLK  102 (149)
T ss_dssp             SSSCSS--EEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHH--TSCCTTCCHH
T ss_pred             CCCCce--EEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCC--CCCCCCCcHH
Confidence            344888  999999999999999999999999999999999999999999999999668999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       103 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  129 (149)
T 1fxt_A          103 SALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             HHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999988653

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=2.8e-39  Score=220.31  Aligned_cols=98  Identities=44%  Similarity=0.931  Sum_probs=94.0

Q ss_pred             CCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCee---eccCCCCCCCCCCCCCHH
Q 033897            6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV---EPKKFGLLVNWQREYTME   82 (109)
Q Consensus         6 d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~i---c~~~l~~~~~W~p~~~l~   82 (109)
                      |++  +|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+. +|.|   |+++|+   +|+|+++|+
T Consensus        53 nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~-~G~icisCL~iL~---~WsP~~ti~  126 (156)
T 2q0v_A           53 TLS--NWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILK---NWNRNYTIE  126 (156)
T ss_dssp             TCC--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCT-TSBBCGGGSHHHH---TCCTTCCHH
T ss_pred             cce--eeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCcc-CCeEehhhccccc---CCCCcCcHH
Confidence            577  9999999999999999999999999999999999999999999999998 8999   788875   599999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++++|++||++|
T Consensus       127 ~vL~sI~~ll~~Pn~~~p~n~~aa~~y  153 (156)
T 2q0v_A          127 TILISLRQEMLSSANKRLPQPNEGEVY  153 (156)
T ss_dssp             HHHHHHHHHTTSTTTTTCCCCCTTCBC
T ss_pred             HHHHHHHHHHhCCCCCCcCChHHHHHh
Confidence            999999999999999999999999987

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=8.4e-40  Score=222.53  Aligned_cols=102  Identities=23%  Similarity=0.458  Sum_probs=97.3

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        30 ~~~~l~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  104 (155)
T 1jat_A           30 HDDNLR--YFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLK--TNWSPALQIR  104 (155)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCCBCCGGGT--TTCCTTCCHH
T ss_pred             CCCchh--EEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC-CCEEEchhhc--cCCCCCCCHH
Confidence            457888  9999999999999999999999999999999999999999999999996 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|.+||++|
T Consensus       105 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  131 (155)
T 1jat_A          105 TVLLSIQALLASPNPNDPLANDVAEDW  131 (155)
T ss_dssp             HHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999998653

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.3e-39  Score=223.27  Aligned_cols=104  Identities=21%  Similarity=0.412  Sum_probs=97.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------   71 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-----------   71 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..           
T Consensus        29 ~~~nl~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~-~G~iCl~iL~~~~~~~~~~~~~  105 (164)
T 3h8k_A           29 NEENFF--EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESS  105 (164)
T ss_dssp             STTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TSBBCCGGGSCSCSCCCSCCTT
T ss_pred             CCCCcc--EEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCC-CCcEeeecccCccccccccccc
Confidence            456899  9999999999999999999999999999999999999999999999997 99999999952           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      .++|+|++||++||++|+++|.+|++++|+|++||.+|
T Consensus       106 ~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~  143 (164)
T 3h8k_A          106 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW  143 (164)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred             ccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHH
Confidence            27899999999999999999999999999999998654

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.1e-39  Score=222.72  Aligned_cols=103  Identities=25%  Similarity=0.410  Sum_probs=97.5

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        36 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~--~~W~p~~~i~  111 (159)
T 2bep_A           36 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR  111 (159)
T ss_dssp             CSSSSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCchh--eEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhh--ccCCCCCcHH
Confidence            456888  999999999999999999999999999999999999999999999999558999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       112 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  138 (159)
T 2bep_A          112 TVLLSLQALLAAAEPDDPQDAVVANQY  138 (159)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999988653

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1e-39  Score=224.26  Aligned_cols=101  Identities=27%  Similarity=0.571  Sum_probs=97.1

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        44 ~~~nl~--~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~-~G~ICl~iL~--~~W~P~~ti~  118 (165)
T 2c4o_A           44 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTIS  118 (165)
T ss_dssp             SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             cCCCcc--eeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC-CCeEeehhhc--CCCCCcCcHH
Confidence            457899  9999999999999999999999999999999999999999999999997 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||++|+++|.+|++++|+|++||++
T Consensus       119 ~vL~si~~ll~~pn~~~P~n~~aa~~  144 (165)
T 2c4o_A          119 KVLLSICSLLCDPNPDDPLVPEIARI  144 (165)
T ss_dssp             HHHHHHHHHHHSCCTTSCSSHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCccccHHHHHH
Confidence            99999999999999999999998764

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=6.5e-40  Score=225.99  Aligned_cols=102  Identities=28%  Similarity=0.507  Sum_probs=97.1

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  +.|+|+++|+
T Consensus        29 ~~~nl~--~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~-~G~ICl~iL~--~~WsP~~~i~  103 (169)
T 1ayz_A           29 LPDNVM--VWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQ--NRWTPTYDVA  103 (169)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGT--TTCCTTCCHH
T ss_pred             cCCccc--cceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCC-CCeEeehhhc--cCCCCcCcHH
Confidence            356788  9999999999999999999999999999999999999999999999998 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       104 ~vL~si~~ll~~Pn~~~P~n~~aa~~~  130 (169)
T 1ayz_A          104 SILTSIQSLFNDPNPASPANVEAATLF  130 (169)
T ss_dssp             HHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence            999999999999999999999988653

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=7.1e-40  Score=221.79  Aligned_cols=101  Identities=27%  Similarity=0.560  Sum_probs=96.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        29 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  103 (150)
T 1z2u_A           29 VGDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTIS  103 (150)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCcce--EEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC-CCeEeecccc--CCCCCCCCHH
Confidence            457888  9999999999999999999999999999999999999999999999997 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||++|++||.+|++++|+|++||.+
T Consensus       104 ~vl~~i~~ll~~pn~~~p~n~~aa~~  129 (150)
T 1z2u_A          104 KVLLSICSLLCDPNPDDPLVPEIARI  129 (150)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCccCHHHHHH
Confidence            99999999999999999999998764

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1.3e-39  Score=222.01  Aligned_cols=102  Identities=23%  Similarity=0.438  Sum_probs=95.8

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      +|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...++|+|+++|++|
T Consensus        36 ~nl~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~~W~p~~~i~~v  112 (157)
T 2gjd_A           36 MDLQ--KWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQI  112 (157)
T ss_dssp             EEEE--EEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCT-TSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred             Cccc--EEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCC-CCcEeeecccCCCCCCCCCcHHHH
Confidence            4777  9999999999999999999999999999999999999999999999997 999999999832389999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           85 LTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        85 l~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      |++|+++|.+|++++|+|++||++|
T Consensus       113 l~~i~~ll~~p~~~~p~n~~aa~~~  137 (157)
T 2gjd_A          113 VLGVQDLLDSPNPNSPAQEPAWRSF  137 (157)
T ss_dssp             HHHHHHHHTSCCTTCCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCccCHHHHHHH
Confidence            9999999999999999999998653

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-39  Score=223.40  Aligned_cols=101  Identities=26%  Similarity=0.455  Sum_probs=95.7

Q ss_pred             CCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHHH
Q 033897            6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDIL   85 (109)
Q Consensus         6 d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~il   85 (109)
                      |++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...++|+|+++|++||
T Consensus        43 nl~--~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~-~G~iCl~iL~~~~~W~p~~ti~~vL  119 (163)
T 3rcz_B           43 DLM--NWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQIL  119 (163)
T ss_dssp             EEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHHHH
T ss_pred             Ccc--EEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCC-CCcEeccccCCCCCcCCcCcHHHHH
Confidence            677  9999999999999999999999999999999999999999999999997 9999999998445799999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           86 TQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        86 ~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++|+++|.+|++++|+|++||++|
T Consensus       120 ~~i~~ll~~P~~~~p~n~~aa~~~  143 (163)
T 3rcz_B          120 LGIQDLLDDPNIASPAQTEAYTMF  143 (163)
T ss_dssp             HHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCccCHHHHHHH
Confidence            999999999999999999998653

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1e-39  Score=226.82  Aligned_cols=102  Identities=24%  Similarity=0.472  Sum_probs=97.7

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  +.|+|+++|+
T Consensus        55 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~--~~WsP~~ti~  129 (179)
T 1i7k_A           55 ESDNLF--KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILK--EKWSALYDVR  129 (179)
T ss_dssp             ETTEEE--EEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             cCCccc--ccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc-CCeEEcccCc--CcCCCCCCHH
Confidence            456888  9999999999999999999999999999999999999999999999998 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||.+|
T Consensus       130 ~vL~sI~sll~~Pn~~~Pln~~aa~l~  156 (179)
T 1i7k_A          130 TILLSIQSLLGEPNIDSPLNTHAAELW  156 (179)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCcchhhHHHHHHh
Confidence            999999999999999999999998765

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1e-39  Score=221.45  Aligned_cols=102  Identities=26%  Similarity=0.560  Sum_probs=97.2

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        29 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  103 (152)
T 2aak_A           29 QDNNIM--LWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQ--NQWSPIYDVA  103 (152)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGT--TSCCTTCCHH
T ss_pred             CCCCcc--EEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCC-CCEEechhhc--CCCCCCCcHH
Confidence            467888  9999999999999999999999999999999999999999999999998 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||.+|+++|.+|++++|+|++|+.+|
T Consensus       104 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  130 (152)
T 2aak_A          104 AILTSIQSLLCDPNPNSPANSEAARMY  130 (152)
T ss_dssp             HHHHHHHHHHTSCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCccccHHHHHHH
Confidence            999999999999999999999988643

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=2.4e-39  Score=225.54  Aligned_cols=105  Identities=25%  Similarity=0.428  Sum_probs=97.8

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC----------
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----------   71 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----------   71 (109)
                      .+++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..          
T Consensus        32 ~~~~nl~--~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~iClsiL~~~~~~~~~~~~  108 (183)
T 3rz3_A           32 VDEGDLY--NWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGEL  108 (183)
T ss_dssp             CTTCCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT-TSBBCCTTC------------
T ss_pred             cCccchh--heeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC-CCcEehhhcCccccccccccc
Confidence            5778999  9999999999999999999999999999999999999999999999998 99999999952          


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           72 -LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        72 -~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                       .++|+|++||++||++|++||.+||+++|+|.+|+.+|
T Consensus       109 ~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~  147 (183)
T 3rz3_A          109 PSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY  147 (183)
T ss_dssp             --CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred             ccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence             27899999999999999999999999999999997643

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.6e-40  Score=223.13  Aligned_cols=102  Identities=24%  Similarity=0.451  Sum_probs=97.8

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        38 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~  112 (158)
T 1zdn_A           38 NEEDLT--DLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLK--RDWTAELGIR  112 (158)
T ss_dssp             CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCHHHHT--TTCCTTCCHH
T ss_pred             CCCChh--heeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCC-CCEEehhhcC--CCCCCCCcHH
Confidence            568899  9999999999999999999999999999999999999999999999998 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|++||++|
T Consensus       113 ~vL~~i~~ll~~pn~~~p~n~~aa~~~  139 (158)
T 1zdn_A          113 HVLLTIKCLLIHPNPESALNEEAGRLL  139 (158)
T ss_dssp             HHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999998653

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.2e-39  Score=221.55  Aligned_cols=102  Identities=17%  Similarity=0.339  Sum_probs=97.5

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|
T Consensus        29 ~~~~~l~--~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i  102 (160)
T 1y8x_A           29 SDPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILR--EDWKPVLTI  102 (160)
T ss_dssp             SSTTCTT--EEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCH
T ss_pred             ccCCccc--eEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC-CCeEEcccch--hhccCCCCH
Confidence            5788999  999988 999999999999999999999999999999999999999998 8999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++||++|++||.+|++++|+|++||++|
T Consensus       103 ~~vL~~i~~ll~~Pn~~~p~n~~aa~~~  130 (160)
T 1y8x_A          103 NSIIYGLQYLFLEPNPEDPLNKEAAEVL  130 (160)
T ss_dssp             HHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            9999999999999999999999998653

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-39  Score=222.48  Aligned_cols=104  Identities=22%  Similarity=0.418  Sum_probs=97.7

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCC--CCCCCCCC
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLL--VNWQREYT   80 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~--~~W~p~~~   80 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...  ++|+|+++
T Consensus        29 ~~~~l~--~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~-~G~iCl~iL~~~~~~~W~p~~~  105 (169)
T 1yh2_A           29 DKDQMD--DLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLN  105 (169)
T ss_dssp             SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGSCTTTSCCCTTSC
T ss_pred             CCCchh--eEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc-CCeEecccccCCcccCCCCCCc
Confidence            567899  9999999999999999999999999999999999999999999999996 899999998622  78999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        81 l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      |++||++|++||.+|++++|+|.+||++|
T Consensus       106 i~~vL~si~~ll~~p~~~~p~n~~aa~~~  134 (169)
T 1yh2_A          106 IATVLTSIQLLMSEPNPDDPLMADISSEF  134 (169)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcchHhHHHHHHH
Confidence            99999999999999999999999988643

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=1.6e-38  Score=217.28  Aligned_cols=103  Identities=41%  Similarity=0.794  Sum_probs=95.1

Q ss_pred             CCCC--CceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            3 DGDD--IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         3 d~~d--~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      +++|  ++  +|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|...++|+|+++
T Consensus        52 ~~~d~~l~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~t  129 (160)
T 2a4d_A           52 DDEDMTLT--RWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYS  129 (160)
T ss_dssp             STTCTTCC--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCC
T ss_pred             CCccccce--eeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCc
Confidence            4555  66  9999999999999999999999999999999999999999999999994489999999853378999999


Q ss_pred             HHHHHHHHHHHhc-CCCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMA-APHNRKLVQPPEGT  107 (109)
Q Consensus        81 l~~il~~i~~ll~-~p~~~~~~~~~a~~  107 (109)
                      |++||++|++||. +||+++|+|+|||.
T Consensus       130 i~~vL~sI~~ll~~~pn~~~P~n~eaa~  157 (160)
T 2a4d_A          130 IKVVLQELRRLMMSKENMKLPQPPEGQC  157 (160)
T ss_dssp             HHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred             HHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence            9999999999995 69999999999985

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=4.1e-39  Score=227.14  Aligned_cols=103  Identities=25%  Similarity=0.410  Sum_probs=97.8

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      .++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        33 ~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~--~~W~p~~~i~  108 (201)
T 3k9o_A           33 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR  108 (201)
T ss_dssp             CSTTSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCCcc--EEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccc--cCCCCCCCHH
Confidence            457888  999999999999999999999999999999999999999999999999558999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|++||++|
T Consensus       109 ~vL~~i~~ll~~p~p~~p~n~~aa~~~  135 (201)
T 3k9o_A          109 TVLLSLQALLAAAEPDDPQDAVVANQY  135 (201)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence            999999999999999999999998653

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-39  Score=226.93  Aligned_cols=103  Identities=25%  Similarity=0.470  Sum_probs=97.2

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        70 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~--~~WsP~~ti~  145 (193)
T 2f4z_A           70 VGGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK--HEWSPALTIR  145 (193)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTSCHH
T ss_pred             cCCCcc--eEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECcccc--ccCCCCCCHH
Confidence            356787  999999999999999999999999999999999999999999999999558999999997  8899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       146 ~vL~sI~sll~~pnp~~P~n~~aa~l~  172 (193)
T 2f4z_A          146 TALLSIQAMLADPVPTDPQDAEVAKMM  172 (193)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999998654

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-39  Score=224.37  Aligned_cols=105  Identities=24%  Similarity=0.387  Sum_probs=97.3

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|...++|+|+++|+
T Consensus        48 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~  125 (169)
T 1yrv_A           48 VSEDMM--EWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLS  125 (169)
T ss_dssp             CSTTSC--EEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHH
T ss_pred             cCCccc--cceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHH
Confidence            467898  999999999999999999999999999999999999999999999993349999999986336899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       126 ~vL~sI~sll~~Pn~~~Pln~eaa~l~  152 (169)
T 1yrv_A          126 SILLALQVMLSNPVLENPVNLEAARIL  152 (169)
T ss_dssp             HHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999999999999999999998653

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=4.3e-39  Score=220.25  Aligned_cols=103  Identities=22%  Similarity=0.447  Sum_probs=96.5

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~   83 (109)
                      ++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...++|+|+++|++
T Consensus        38 ~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~~W~p~~~i~~  114 (161)
T 2grr_A           38 TMNLM--NWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQ  114 (161)
T ss_dssp             CEEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHH
T ss_pred             CCCcc--EEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCC-CCeEeehhcCCCCCcCCCCcHHH
Confidence            46777  9999999999999999999999999999999999999999999999997 99999999973348999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           84 ILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        84 il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ||++|++||.+|++++|+|++|+.+|
T Consensus       115 vl~~i~~ll~~p~~~~p~n~~aa~~~  140 (161)
T 2grr_A          115 ILLGIQELLNEPNIQSPAQAEAYTIY  140 (161)
T ss_dssp             HHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            99999999999999999999988643

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.9e-39  Score=223.53  Aligned_cols=102  Identities=17%  Similarity=0.349  Sum_probs=97.6

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|
T Consensus        49 p~~~nl~--~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~-~G~iCl~iL~--~~W~p~~~i  122 (180)
T 2nvu_C           49 SDPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGNVALNILR--EDWKPVLTI  122 (180)
T ss_dssp             SSTTCTT--EEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TSBBCCGGGT--TSCCTTCCH
T ss_pred             ccccccc--ceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC-CCcEEccccc--ccCCCCCCH
Confidence            5788999  999988 999999999999999999999999999999999999999998 8999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++||++|+++|.+|++++|+|++||.+|
T Consensus       123 ~~vL~si~~ll~~Pn~~~p~n~~aa~~~  150 (180)
T 2nvu_C          123 NSIIYGLQYLFLEPNPEDPLNKEAAEVL  150 (180)
T ss_dssp             HHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            9999999999999999999999998653

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=9.7e-39  Score=220.61  Aligned_cols=104  Identities=19%  Similarity=0.364  Sum_probs=97.7

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc-ccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS-RINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++|||||+..+|.||+++|. .++|+|+++|
T Consensus        43 ~~~nl~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~-~~~W~p~~~i  119 (172)
T 2y9m_A           43 DETDLS--KWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK-PEEWTPVWDL  119 (172)
T ss_dssp             STTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGS-TTTCCTTCCH
T ss_pred             CCCchh--EEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccC-CCCCCCcCcH
Confidence            678999  9999999999999999999999999999999999999999 99999996448999999995 3799999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++||++|++||.+|++++|+|++||++|
T Consensus       120 ~~vL~si~~ll~~p~~~~p~n~~aa~~~  147 (172)
T 2y9m_A          120 LHCVHAVWRLLREPVCDSPLDVDIGNII  147 (172)
T ss_dssp             HHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            9999999999999999999999998653

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.9e-39  Score=231.06  Aligned_cols=103  Identities=21%  Similarity=0.486  Sum_probs=97.5

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        48 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~--~~WsP~~ti~  123 (216)
T 2pwq_A           48 KDSNFF--EWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK--NEWSPALTIR  123 (216)
T ss_dssp             CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHH--HHCCTTCCHH
T ss_pred             cCCccc--eeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhc--ccCCCCCcHH
Confidence            457888  999999999999999999999999999999999999999999999999558999999997  8899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       124 ~VL~sI~sLL~~Pnp~dPln~eaa~~~  150 (216)
T 2pwq_A          124 TALLSIQALLSDPQPDDPQDAEVAKMY  150 (216)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999999999999999999988653

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.1e-38  Score=224.08  Aligned_cols=102  Identities=29%  Similarity=0.559  Sum_probs=97.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++|+
T Consensus        73 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~--~~WsP~~ti~  147 (194)
T 3bzh_A           73 KGDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILK--DNWSPALTIS  147 (194)
T ss_dssp             SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             ccCccc--cceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC-CCceechhhh--ccCCCcCcHH
Confidence            567899  9999999999999999999999999999999999999999999999997 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|.+|+.+|
T Consensus       148 ~vL~sI~~ll~~pnp~~Pln~~aa~l~  174 (194)
T 3bzh_A          148 KVLLSICSLLTDCNPADPLVGSIATQY  174 (194)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCccchhHHHHHHH
Confidence            999999999999999999999987643

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=2.4e-39  Score=219.80  Aligned_cols=103  Identities=18%  Similarity=0.395  Sum_probs=96.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        24 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~--~~W~p~~~i~   99 (152)
T 2onu_A           24 NNGSTQ--DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN--QTWTPLYSLV   99 (152)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHH--HHCCTTCCHH
T ss_pred             ccCccc--eEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEeccccc--ccCCCCCCHH
Confidence            357888  999999999999999999999999999999999999999999999999558999999997  8999999999


Q ss_pred             HHHHH-HHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQ-LKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~-i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++ |++||.+|++++|+|++|+++|
T Consensus       100 ~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~  127 (152)
T 2onu_A          100 NVFEVFLPQLLTYPNPSDPLNSDAASLL  127 (152)
T ss_dssp             HHHHTHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            99999 6899999999999999988643

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=4.3e-39  Score=229.11  Aligned_cols=103  Identities=21%  Similarity=0.407  Sum_probs=96.9

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      ++++++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|++||+
T Consensus        28 ~~~~l~--~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~--~~WsP~~ti~  103 (215)
T 1tte_A           28 SESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSPVITLK  103 (215)
T ss_dssp             SSSSCC--EEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTT--CCSCTTCCHH
T ss_pred             CCcccc--ccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCC--CCCCCcCcHH
Confidence            445677  999999999999999999999999999999999999999999999999768999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++|+++|
T Consensus       104 ~VL~sI~sLL~~Pnp~~Pln~eaa~~~  130 (215)
T 1tte_A          104 SALISLQALLQSPEPNDPQDAEVAQHY  130 (215)
T ss_dssp             HHHHHHHHHHTSCCCSSCSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            999999999999999999999987643

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=4.4e-38  Score=217.05  Aligned_cols=103  Identities=41%  Similarity=0.799  Sum_probs=94.9

Q ss_pred             CCCC--CceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            3 DGDD--IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         3 d~~d--~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      +++|  ++  +|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|...++|+|++|
T Consensus        62 ~~~d~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~t  139 (170)
T 2hlw_A           62 DDEDMTLT--RWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYS  139 (170)
T ss_dssp             STTCSSCC--BEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCC
T ss_pred             Ccccccce--eeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCc
Confidence            4555  77  9999999999999999999999999999999999999999999999994489999999853378999999


Q ss_pred             HHHHHHHHHHHhcC-CCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMAA-PHNRKLVQPPEGT  107 (109)
Q Consensus        81 l~~il~~i~~ll~~-p~~~~~~~~~a~~  107 (109)
                      |++||++|++||.+ ||+++|+|+||+.
T Consensus       140 i~~vL~sI~~ll~~~pn~~~P~n~eaa~  167 (170)
T 2hlw_A          140 IKVVLQELRRLMMSKENMKLPQPPEGQC  167 (170)
T ss_dssp             HHHHHHHHHHHHHSTTTSSSCCCSSCCB
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCccccc
Confidence            99999999999974 9999999999985

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.8e-38  Score=215.95  Aligned_cols=102  Identities=19%  Similarity=0.395  Sum_probs=96.9

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. .++|+|+++|+
T Consensus        30 ~~~~l~--~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~-~~~W~p~~~i~  104 (155)
T 1wzv_A           30 DDANVL--VWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIIS-SENWKPCTKTC  104 (155)
T ss_dssp             CSSCTT--EEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBCCCGGGC-TTTCCTTCCHH
T ss_pred             CCCchh--eEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC-CCeEeecCCC-ccCCCCCCcHH
Confidence            678999  9999999 99999999999999999999999999999999999999998 9999999993 38999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|++||.+|
T Consensus       105 ~vl~~i~~ll~~p~~~~p~n~~aa~~~  131 (155)
T 1wzv_A          105 QVLEALNVLVNRPNIREPLRMDLADLL  131 (155)
T ss_dssp             HHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            999999999999999999999988653

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=5.1e-38  Score=228.11  Aligned_cols=103  Identities=25%  Similarity=0.410  Sum_probs=97.9

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        85 ~~dnl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~--~~WsP~~ti~  160 (253)
T 3e46_A           85 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR  160 (253)
T ss_dssp             CSTTSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TCCCTTCCHH
T ss_pred             CCCccc--EEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeeccccc--CCCCCCCCHH
Confidence            457888  999999999999999999999999999999999999999999999999558999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|++||++|
T Consensus       161 ~vL~sI~~ll~~pnp~~Pln~eaa~l~  187 (253)
T 3e46_A          161 TVLLSLQALLAAAEPDDPQDAVVANQY  187 (253)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence            999999999999999999999998654

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=6.7e-38  Score=212.87  Aligned_cols=101  Identities=19%  Similarity=0.446  Sum_probs=95.9

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. .++|+|+++|+
T Consensus        28 ~~~~l~--~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~-~~~W~p~~~i~  102 (154)
T 1c4z_D           28 DEANLL--TWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVIS-AENWKPATKTD  102 (154)
T ss_dssp             SCSSSS--EEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TCBBCCTTTS-SSSCCTTCCHH
T ss_pred             CCCchh--eEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC-CCEEECCCCC-CCCCCCCCcHH
Confidence            678899  9999998 99999999999999999999999999999999999999997 9999999995 37899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||++|++||.+|++++|+|++||++
T Consensus       103 ~vl~~i~~ll~~p~~~~p~n~~aa~~  128 (154)
T 1c4z_D          103 QVIQSLIALVNDPQPEHPLRADLAEE  128 (154)
T ss_dssp             HHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCchhhHHHHHH
Confidence            99999999999999999999998764

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-38  Score=220.20  Aligned_cols=103  Identities=22%  Similarity=0.371  Sum_probs=97.0

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|+
T Consensus        33 ~~~~l~--~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~--~~W~p~~~i~  108 (171)
T 1yf9_A           33 PSDTVA--EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN--QTWTPMYQLE  108 (171)
T ss_dssp             ECSSTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH--HHCCTTCCTH
T ss_pred             CCCCce--EEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccc--cCCCCCCcHH
Confidence            467899  999999999999999999999999999999999999999999999999548999999997  8999999999


Q ss_pred             HHHHHH-HHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQL-KKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i-~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++| ++||.+|++++|+|++|+++|
T Consensus       109 ~vL~sil~~ll~~Pn~~~p~n~~aa~~~  136 (171)
T 1yf9_A          109 NIFDVFLPQLLRYPNPSDPLNVQAAHLL  136 (171)
T ss_dssp             HHHHTHHHHHHHSCCSSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999997 799999999999999988653

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-37  Score=202.11  Aligned_cols=93  Identities=24%  Similarity=0.468  Sum_probs=83.4

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      +++|++  +|+++|.||++||||||.|+++|.||++||++||+|+|.|++ +||||+. +|.||+++|.  ++|+|++||
T Consensus        31 ~~~~l~--~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~-~G~iCl~iL~--~~W~P~~~i  105 (125)
T 2fo3_A           31 HPNNIR--IWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLG--DDYNPSLSI  105 (125)
T ss_dssp             CTTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT-TSBBCCGGGT--TTCCTTCCH
T ss_pred             Ccchhh--hhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCC-CCEEEchhcC--CCCCCCCcH
Confidence            568899  999999999999999999999999999999999999999997 9999997 9999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKL  100 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~  100 (109)
                      ++||++|++||.+|+.++.
T Consensus       106 ~~vl~si~~ll~~p~~~~~  124 (125)
T 2fo3_A          106 SGLVLSIISMLSSAKEKKL  124 (125)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhCcccccC
Confidence            9999999999999998763

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=7.2e-38  Score=215.15  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC----CCCCCC
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----LVNWQR   77 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----~~~W~p   77 (109)
                      ++++|++  .|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..    .++|+|
T Consensus        39 ~~~~~l~--~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~~~~~~W~p  114 (167)
T 3fn1_B           39 PDPNKLH--CFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAP  114 (167)
T ss_dssp             SSSSCTT--EEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCT-TCCBCCGGGSBCSSSTTSBCT
T ss_pred             CCCCcce--eEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCC-CCEEechhhccCCCCCCCCCC
Confidence            4678898  999988 999999999999999999999999999999999999999997 99999999972    138999


Q ss_pred             CCCHHHHHHHHHHHhcC-CCCCCCCCCCCCCCC
Q 033897           78 EYTMEDILTQLKKEMAA-PHNRKLVQPPEGTYF  109 (109)
Q Consensus        78 ~~~l~~il~~i~~ll~~-p~~~~~~~~~a~~~~  109 (109)
                      +++|++||++|++||.+ |++++|+|++|+.+|
T Consensus       115 ~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~  147 (167)
T 3fn1_B          115 TRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHH  147 (167)
T ss_dssp             TCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHH
Confidence            99999999999999999 699999999998653

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=1.8e-37  Score=217.20  Aligned_cols=104  Identities=16%  Similarity=0.219  Sum_probs=98.2

Q ss_pred             CCCCCCcee-EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            2 DDGDDIYMR-SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         2 ~d~~d~~~~-~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      ++++|++++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++
T Consensus        55 p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~--~~W~p~~~  130 (190)
T 3o2u_A           55 PDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL-KGNVCLNILR--EDWSPALD  130 (190)
T ss_dssp             TTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCT-TSBBCCGGGT--TTCCTTCC
T ss_pred             CCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCC-CCeEechhcc--CCCCCCCC
Confidence            677888876 9999997 88899999999999999999999999999999999999997 9999999997  99999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        81 l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      |++||++|+++|.+|++++|+|++||.+|
T Consensus       131 i~~vL~~i~~ll~~pn~~~pln~~aa~~~  159 (190)
T 3o2u_A          131 LQSIITGLLFLFLEPNPNDPLNKDAAKLL  159 (190)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence            99999999999999999999999998653

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=220.11  Aligned_cols=101  Identities=20%  Similarity=0.414  Sum_probs=96.0

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI   84 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i   84 (109)
                      +|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|.  ++|+|+++|++|
T Consensus        48 ddl~--~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~--~~WsP~~ti~~i  123 (179)
T 2z5d_A           48 GGLN--EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN--QTWTALYDLTNI  123 (179)
T ss_dssp             EETT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH--HHCCTTCCTTHH
T ss_pred             CCCc--eeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccc--cCCCCCCCHHHH
Confidence            4677  999999999999999999999999999999999999999999999999768999999997  899999999999


Q ss_pred             HHH-HHHHhcCCCCCCCCCCCCCCCC
Q 033897           85 LTQ-LKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        85 l~~-i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      |++ |++||.+|++++|+|++||++|
T Consensus       124 L~s~I~~Ll~~Pn~~~p~n~eaa~~~  149 (179)
T 2z5d_A          124 FESFLPQLLAYPNPIDPLNGDAAAMY  149 (179)
T ss_dssp             HHTHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            999 9999999999999999998653

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.7e-36  Score=200.30  Aligned_cols=91  Identities=20%  Similarity=0.437  Sum_probs=86.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      +++|++  +|+++|.||++||||||.|+++|.||++||++||+|+|.|++ +||||+. +|.||+++|.  ++|+|+++|
T Consensus        45 ~~~nl~--~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~-~G~ICl~iL~--~~WsP~~ti  119 (136)
T 2h2y_A           45 HPSNIR--IWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLG--DDYNPSLSI  119 (136)
T ss_dssp             CTTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCT-TCCBCCGGGT--TTCCTTCCH
T ss_pred             cccccc--ccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCC-CCEEECcccc--CCCCCCCcH
Confidence            467899  999999999999999999999999999999999999999997 9999997 9999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 033897           82 EDILTQLKKEMAAPHNR   98 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~   98 (109)
                      ++||++|++||.+|+.+
T Consensus       120 ~~vL~si~sll~~p~~k  136 (136)
T 2h2y_A          120 SGLILSIISMLSSAKEK  136 (136)
T ss_dssp             HHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHHHHhCcCcC
Confidence            99999999999998763

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.1e-35  Score=195.82  Aligned_cols=87  Identities=18%  Similarity=0.322  Sum_probs=83.6

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccc--cCCCCCCCCeeeccCCCCCCCCCCCC
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN--MTCVNHETGVVEPKKFGLLVNWQREY   79 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~--Hpnv~~~~g~ic~~~l~~~~~W~p~~   79 (109)
                      ++++|++  +|+++|.||+|||||||.|+++|.||++||++||+|+|.|+++  ||||+. +|.||+++|.  ++|+|++
T Consensus        48 ~~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~-~G~ICL~iL~--~~WsP~~  122 (136)
T 2a7l_A           48 SVQNSIT--QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILT--EDWSPAL  122 (136)
T ss_dssp             CCCCSCE--EEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCT-TCBBCCGGGT--TTCCTTS
T ss_pred             eCccccc--eeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCC-CCeEEchhcC--CCCCCCC
Confidence            4678898  9999999999999999999999999999999999999999999  999997 9999999997  8999999


Q ss_pred             CHHHHHHHHHHHhc
Q 033897           80 TMEDILTQLKKEMA   93 (109)
Q Consensus        80 ~l~~il~~i~~ll~   93 (109)
                      +|++||++|++||.
T Consensus       123 ti~~vL~sI~slL~  136 (136)
T 2a7l_A          123 SVQSVCLSIISMLS  136 (136)
T ss_dssp             CHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHhC
Confidence            99999999999984

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=3.9e-36  Score=229.90  Aligned_cols=102  Identities=26%  Similarity=0.593  Sum_probs=97.5

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|++||+
T Consensus        28 ~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~il~--~~W~p~~~i~  102 (399)
T 4ddg_A           28 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILR--SQWSPALTIS  102 (399)
T ss_dssp             ETTEEE--EEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT-TCBBCCGGGT--TSCCTTCCHH
T ss_pred             cCCcce--EEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC-CCeEeCcccc--cCCCccccHH
Confidence            467888  9999999999999999999999999999999999999999999999997 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|++||.+|++++|+|++||++|
T Consensus       103 ~vL~~i~~ll~~pnp~~p~n~~aa~~~  129 (399)
T 4ddg_A          103 KVLLSICSLLCDPNPDDPLVPEIARIY  129 (399)
T ss_dssp             HHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence            999999999999999999999998643

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=9.4e-36  Score=204.72  Aligned_cols=102  Identities=26%  Similarity=0.547  Sum_probs=93.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCC--CCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHE--GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~ye--gg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      +++|++  +|+++|.||++|+|+  ||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  ++|+|+++
T Consensus        45 ~~~nl~--~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~il~--~~W~p~~~  119 (167)
T 4ds2_A           45 DTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGICDRMVN--DFWTPDQH  119 (167)
T ss_dssp             EESSTT--EEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCT-TSCCCTHHHH--TTCCTTSC
T ss_pred             CCCccc--EEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCC-CCEEEcccCc--CCCCCCCC
Confidence            467899  999999999999999  9999999999999999999999999999999996 9999999997  89999999


Q ss_pred             HHHHHH-HHHHHhcC--CCCCCCCCCCCCCCC
Q 033897           81 MEDILT-QLKKEMAA--PHNRKLVQPPEGTYF  109 (109)
Q Consensus        81 l~~il~-~i~~ll~~--p~~~~~~~~~a~~~~  109 (109)
                      ++++|+ .|++|+..  |++++|+|++|+++|
T Consensus       120 i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~  151 (167)
T 4ds2_A          120 ASDVIKLVLDRVFSQYKSRRDDDVNPEARHYL  151 (167)
T ss_dssp             HHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCcchHhHHHHHHH
Confidence            999765 57777764  899999999998653

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.98  E-value=5e-33  Score=207.33  Aligned_cols=100  Identities=16%  Similarity=0.274  Sum_probs=92.9

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccc-----cccCCCCCCCCeeeccCCCC-----C
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEPKKFGL-----L   72 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~g~ic~~~l~~-----~   72 (109)
                      +++|++  .|+++|.||++|||+||+|+++|.||++||++||+|+|.|+     +|||||+. +|.||+++|..     .
T Consensus       105 ~ednl~--~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~-~G~ICLsiL~~~~g~~~  181 (323)
T 3ceg_A          105 DEERLD--IMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILNTWHGRPE  181 (323)
T ss_dssp             ESSCTT--EEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCT-TCBBCCGGGTSSCCCGG
T ss_pred             cCCCcc--ccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCc-CCeEechhhccccCCCc
Confidence            568899  99999999999999999999999999999999999999998     99999997 99999999962     1


Q ss_pred             CCCCCCC-CHHHHHHHHHHHhc--CCCCCCCCCCCC
Q 033897           73 VNWQREY-TMEDILTQLKKEMA--APHNRKLVQPPE  105 (109)
Q Consensus        73 ~~W~p~~-~l~~il~~i~~ll~--~p~~~~~~~~~a  105 (109)
                      ++|+|++ +|++||++|++||.  +|++++|++.++
T Consensus       182 e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a  217 (323)
T 3ceg_A          182 EKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS  217 (323)
T ss_dssp             GSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGG
T ss_pred             CCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHH
Confidence            5899999 89999999999996  778899999876

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=8.4e-32  Score=188.04  Aligned_cols=91  Identities=23%  Similarity=0.332  Sum_probs=78.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-CCCCCCCCCH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-LVNWQREYTM   81 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-~~~W~p~~~l   81 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  |||++. +|.||+++|+. .+.|+|+++|
T Consensus        39 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~-~G~ICL~iL~~~~~~W~P~~ti  113 (187)
T 2f4w_A           39 LPSNIL--EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKC-NTRLCLSITDFHPDTWNPAWSV  113 (187)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCT-TSCBC----------CCTTCCH
T ss_pred             cCCccc--eeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceecc-CCeEeeeccccCccCCCCcCcH
Confidence            467888  99999999999999999999999999999999999999999  999997 89999999942 2899999999


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 033897           82 EDILTQLKKEMAAPHNR   98 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~   98 (109)
                      .+||++|++||.+|+++
T Consensus       114 ~~vL~si~sll~~p~p~  130 (187)
T 2f4w_A          114 STILTGLLSFMVEKGPT  130 (187)
T ss_dssp             HHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            99999999999999875

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=3.4e-32  Score=189.91  Aligned_cols=95  Identities=17%  Similarity=0.313  Sum_probs=87.3

Q ss_pred             CCCCCceeEEEEEEECC-CCCCCCC-----------CEEEEEEEccCCCCCCCCccccccccccC-CCCCCCCeeeccCC
Q 033897            3 DGDDIYMRSWTGTIIGP-HNTVHEG-----------RIYQLKLFCDKDYPEKPPSVRFHSRINMT-CVNHETGVVEPKKF   69 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp-~~t~yeg-----------g~~~~~i~fp~~yP~~pP~v~f~t~i~Hp-nv~~~~g~ic~~~l   69 (109)
                      +++|++  +|+++|.|| ++|||+|           |.|+++|.||++||++||+|+|.|+++|| ||+. +|.||+++|
T Consensus        55 ~~dnl~--~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~-~G~ICL~iL  131 (186)
T 1zuo_A           55 INDSLY--DWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG-GGALCMELL  131 (186)
T ss_dssp             ETTEEE--EEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCG-GGBBCCGGG
T ss_pred             cCCccc--eeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCC-CCcEEeccC
Confidence            457888  999999998 9999998           89999999999999999999999999999 6997 999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC
Q 033897           70 GLLVNWQREYTMEDILTQLKKEMAAPHNRKLV  101 (109)
Q Consensus        70 ~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~  101 (109)
                      . .++|+|+++|++||++|++||.+|+.+...
T Consensus       132 ~-~~~WsP~~ti~~VL~sI~slL~~p~a~~~~  162 (186)
T 1zuo_A          132 T-KQGWSSAYSIESVIMQINATLVKGKARVQF  162 (186)
T ss_dssp             S-TTTCCTTSCHHHHHHHHHHHHHHTTCEECT
T ss_pred             C-CCCCCCcCcHHHHHHHHHHHHcCCChhHhh
Confidence            5 378999999999999999999998776543

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.89  E-value=4.5e-24  Score=145.52  Aligned_cols=78  Identities=9%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCC----------EEEEEEEccCCCCCCCCccccccc-cccCCCCCCCCeeeccCCCCC
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSR-INMTCVNHETGVVEPKKFGLL   72 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~~g~ic~~~l~~~   72 (109)
                      ++|++  .|.+.+.||.||+|+||          .|++++.||.+||++||+|+|.++ ++|||||. +|+||+++|. .
T Consensus        52 k~n~~--~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~-~G~ICLdIL~-k  127 (172)
T 2z6o_A           52 KNADN--DWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYR-GGKICLTDHF-K  127 (172)
T ss_dssp             HHTTC--CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCT-TSBBCCCTTH-H
T ss_pred             ccccc--eeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCC-CCcEechhhc-c
Confidence            35777  99999999999999999          999999999999999999999998 99999998 9999999983 1


Q ss_pred             C---CCCCCCCHHHHH
Q 033897           73 V---NWQREYTMEDIL   85 (109)
Q Consensus        73 ~---~W~p~~~l~~il   85 (109)
                      .   .|+|.++|..+|
T Consensus       128 p~Ws~~~P~~~IahiL  143 (172)
T 2z6o_A          128 PLWARNVPKFGLAHLM  143 (172)
T ss_dssp             HHHHHHTTSCCHHHHH
T ss_pred             ccccccCCccCHHHHH
Confidence            3   455999999997

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.79  E-value=9.6e-20  Score=124.35  Aligned_cols=85  Identities=15%  Similarity=0.309  Sum_probs=74.7

Q ss_pred             EEEEEEECCCCCCCCCCE---EEEEEEccCCCCCCCCcccccc-------c---cc-cCCCCCCCCeeeccCCCCCCCCC
Q 033897           11 SWTGTIIGPHNTVHEGRI---YQLKLFCDKDYPEKPPSVRFHS-------R---IN-MTCVNHETGVVEPKKFGLLVNWQ   76 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg~---~~~~i~fp~~yP~~pP~v~f~t-------~---i~-Hpnv~~~~g~ic~~~l~~~~~W~   76 (109)
                      ++-+++.|...++|+|+.   |.+.|-||.+||++||.|.|.+       +   ++ |||||. +|+||+++|   ++|+
T Consensus        62 ~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~-~G~I~lpyL---~~W~  137 (162)
T 3r3q_A           62 QLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPIL---HAWD  137 (162)
T ss_dssp             EEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCT-TSBBCCGGG---GSCC
T ss_pred             heEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCC-CCcEeCccc---ccCC
Confidence            556667777679999999   8899999999999999997754       1   77 999998 999999999   4699


Q ss_pred             C-CCCHHHHHHHHHHHhcCCCCCC
Q 033897           77 R-EYTMEDILTQLKKEMAAPHNRK   99 (109)
Q Consensus        77 p-~~~l~~il~~i~~ll~~p~~~~   99 (109)
                      + +.++.++|.+|+++|.+|+++.
T Consensus       138 p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          138 PAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             GGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCcHHHHHHHHHHHhcCCCCCC
Confidence            8 6899999999999999999975

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.60  E-value=5e-16  Score=104.16  Aligned_cols=63  Identities=14%  Similarity=0.264  Sum_probs=58.1

Q ss_pred             EEEEEEECCCCCCCCCC----------EEEEEEEccCCCCCCCCccccccc-cccCCCCCCCCeeeccCCCCCCCCCCCC
Q 033897           11 SWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSR-INMTCVNHETGVVEPKKFGLLVNWQREY   79 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~~g~ic~~~l~~~~~W~p~~   79 (109)
                      .|...+.||.||+|+|+          .|+++++||.+||.+||+|+|.+. .+|+|+|. +|+||+++.     |+|.+
T Consensus        59 dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr-~GkICLdIh-----wkPlW  132 (168)
T 3kpa_A           59 HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYR-GGKICMTTH-----FFPLW  132 (168)
T ss_dssp             CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEET-TTEECCCTT-----HHHHH
T ss_pred             CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccC-CCcEEeccc-----cchhh
Confidence            79999999999999999          999999999999999999999995 89999997 999999874     66654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.53  E-value=7.6e-15  Score=98.58  Aligned_cols=79  Identities=19%  Similarity=0.352  Sum_probs=69.5

Q ss_pred             CCCceeEEEEEEECCCCCCCCCCEEEE--EEEccCCCCCCCCccccccc------cccCCCCCCCCeeeccCCCCCCCCC
Q 033897            5 DDIYMRSWTGTIIGPHNTVHEGRIYQL--KLFCDKDYPEKPPSVRFHSR------INMTCVNHETGVVEPKKFGLLVNWQ   76 (109)
Q Consensus         5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~--~i~fp~~yP~~pP~v~f~t~------i~Hpnv~~~~g~ic~~~l~~~~~W~   76 (109)
                      .+++  +|.++|.    .+|+|+.|.+  .|-||.+||++||.| |.++      ..|+|||. +|+||++.|.   .|+
T Consensus        51 ~~LL--~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~---~W~  119 (146)
T 3obq_A           51 RELM--NLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLH---EWK  119 (146)
T ss_dssp             CEEE--EEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHH---TCC
T ss_pred             heEE--EEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEeccccc---ccC
Confidence            3555  9999998    6899999995  889999999999999 7766      48999998 9999999984   598


Q ss_pred             C-CCCHHHHHHHHHHHhcC
Q 033897           77 R-EYTMEDILTQLKKEMAA   94 (109)
Q Consensus        77 p-~~~l~~il~~i~~ll~~   94 (109)
                      + ..+|.+++..+++.|.+
T Consensus       120 ~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A          120 HPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             TTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            6 89999999999999974

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.81  E-value=0.035  Score=35.22  Aligned_cols=40  Identities=25%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc
Q 033897           11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   50 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t   50 (109)
                      .+.+.|..-.+..-+.-.+.+.+.+|++||.++|.+...+
T Consensus        39 ~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           39 SFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             EEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             EEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            4555555322222234478899999999999999998765

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=93.64  E-value=0.14  Score=32.72  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=28.5

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc
Q 033897           11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   50 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t   50 (109)
                      .+.+.+.+..+ .=..-.+.+.+.+|++||..+|.+...+
T Consensus        47 ~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           47 IFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             CEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             EEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            56777764322 1123478899999999999999998765

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.22  E-value=0.28  Score=30.99  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=27.7

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc
Q 033897           11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   50 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t   50 (109)
                      .+.+.+...... =..-.+.+.+.+|.+||..+|.+...+
T Consensus        41 ~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           41 VFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             EEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             eEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            667777632211 012478999999999999999997664

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=92.94  E-value=0.24  Score=31.23  Aligned_cols=64  Identities=14%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CEEEEEEEccCCCCCCCCccccccccccCCCCCC-CCeeeccCCCCCCCC---CCCCCHHHHHHHHHHHhcCCC
Q 033897           27 RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE-TGVVEPKKFGLLVNW---QREYTMEDILTQLKKEMAAPH   96 (109)
Q Consensus        27 g~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~-~g~ic~~~l~~~~~W---~p~~~l~~il~~i~~ll~~p~   96 (109)
                      -.+.+.|.+|++||..+|.+...+..   ++... -..+|-.+ .  +.|   ...-=|.+++..+|..|.+-|
T Consensus        59 ~~~~L~~~~p~~YP~~~P~i~~~~~~---~L~~~~~~~L~~~L-~--~~~~e~~G~~mif~lv~~lqe~l~~~n  126 (128)
T 2day_A           59 VCFTLVLQVPAEYPHEVPQISIRNPR---GLSDEQIHTILQVL-G--HVAKAGLGTAMLYELIEKGKEILSGPS  126 (128)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEEE---SSCHHHHHHHHHHH-H--HHHHHTTTSCCHHHHHHHHHHHHCCCC
T ss_pred             eeEEEEEEcCCCCCCCCCCeEEEcCC---CCCHHHHHHHHHHH-H--HHHHHhCCCEEhHHHHHHHHHHHHhcc
Confidence            47889999999999999999877632   23210 01122111 1  222   122247778888888776543

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=91.10  E-value=0.12  Score=32.94  Aligned_cols=62  Identities=11%  Similarity=0.281  Sum_probs=37.6

Q ss_pred             CEEEEEEEccCCCCCCCCccccccccccCCCCCCC-CeeeccCCCCCCCC---CCCCCHHHHHHHHHHHhcC
Q 033897           27 RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHET-GVVEPKKFGLLVNW---QREYTMEDILTQLKKEMAA   94 (109)
Q Consensus        27 g~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~-g~ic~~~l~~~~~W---~p~~~l~~il~~i~~ll~~   94 (109)
                      -.+.+.|.||++||.++|.|.....   .++.... ..+|-. |.  +.|   ...-=|.+++..+|..|.+
T Consensus        63 ~~~~L~v~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~-L~--~~~~e~~G~~mif~lv~~lqe~l~~  128 (137)
T 1ukx_A           63 VQVELRVKCPPTYPDVVPEIDLKNA---KGLSNESVNLLKSH-LE--ELAKKQCGEVMIFELAHHVQSFLSE  128 (137)
T ss_dssp             CEEEEEECCCTTTTSSCCCCEEEEE---ESSSSSHHHHHHHH-HH--HHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCCCCCCcEEEecC---CCCCHHHHHHHHHH-HH--HHHHHhCCCEEhHHHHHHHHHHHHh
Confidence            4688999999999999999987543   2332210 111111 11  222   1233477888888888764

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=91.07  E-value=0.95  Score=30.99  Aligned_cols=61  Identities=15%  Similarity=0.248  Sum_probs=45.8

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHH
Q 033897           11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKK   90 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~il~~i~~   90 (109)
                      ..++++..-     .|..-.++|.++.+||.++|.+...-|+  |.               .-.|++..++.+++.+.+.
T Consensus        27 ~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~---------------~~~w~~~ssL~~v~~qF~~   84 (186)
T 3zqs_A           27 TIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF---------------CASWTPQSSLISIYSQFLA   84 (186)
T ss_dssp             EEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC---------------CCCCCTTCCHHHHHHHHHH
T ss_pred             EEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc---------------ccccCCCccHHHHHHHHHH
Confidence            666666643     3578889999999999999988665543  11               0469988999999988887


Q ss_pred             Hhc
Q 033897           91 EMA   93 (109)
Q Consensus        91 ll~   93 (109)
                      .|.
T Consensus        85 ~Le   87 (186)
T 3zqs_A           85 AIE   87 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=89.81  E-value=0.22  Score=32.56  Aligned_cols=25  Identities=20%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             CEEEEEEEccCCCCCCCCccccccc
Q 033897           27 RIYQLKLFCDKDYPEKPPSVRFHSR   51 (109)
Q Consensus        27 g~~~~~i~fp~~yP~~pP~v~f~t~   51 (109)
                      -.+.+.|.+|.+||..+|.+.....
T Consensus        73 ~~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           73 AMFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             ceEEEEEECCCCCCCCCCeEEEEcc
Confidence            3688999999999999999987763

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=87.77  E-value=0.37  Score=31.65  Aligned_cols=24  Identities=17%  Similarity=0.081  Sum_probs=21.4

Q ss_pred             CEEEEEEEccCCCCCCCCcccccc
Q 033897           27 RIYQLKLFCDKDYPEKPPSVRFHS   50 (109)
Q Consensus        27 g~~~~~i~fp~~yP~~pP~v~f~t   50 (109)
                      ..+.++|.+|.+||..+|.+...+
T Consensus        75 ~~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           75 VKIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC
T ss_pred             ceEEEEEEcCCCCCCCCCcEEEEe
Confidence            379999999999999999998665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	3e-34
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-31
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	7e-16
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-10
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-10
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	5e-10
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	6e-10
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-09
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	3e-09
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	4e-09
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-08
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-08
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	9e-08
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	1e-07
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-07
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-07
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	5e-07
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-06
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	2e-06
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-06
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	3e-06
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	4e-06
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	5e-06
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	6e-05
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	0.001
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	0.001

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  113 bits (283), Expect = 3e-34
 Identities = 49/109 (44%), Positives = 71/109 (65%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           ++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN  
Sbjct: 30  LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 89

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
            GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG  +
Sbjct: 90  NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 138

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score =  105 bits (264), Expect = 2e-31
 Identities = 56/109 (51%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
           + D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  
Sbjct: 29  LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 88

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
           TG V    F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct: 89  TGEV-QTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 136

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 7e-16
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN------ 58
           DD  +  W   IIGP +T++EG +++  L   KDYP +PP ++F + I    V+      
Sbjct: 25  DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVC 84

Query: 59  ----HETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
               HE G  +         W   +T+E I+  +   +A P
Sbjct: 85  ISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 53.2 bits (127), Expect = 1e-10
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN------ 58
           DD  +  W   +IGP +T++EG  ++  L   +DYP+KPP ++F S I    ++      
Sbjct: 26  DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVC 85

Query: 59  ----HETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
               H+ G  +         W   +T+E IL  +   +  P
Sbjct: 86  ISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 126

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 51.6 bits (123), Expect = 2e-10
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
             ++I +  W    +G  NT++   +Y+LK+    DYP KPP V F  +       +  G
Sbjct: 23  HPNNIRI--WIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNG 80

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQL 88
            +      L  ++    ++  ++  +
Sbjct: 81  DICLSL--LGDDYNPSLSISGLVLSI 104

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 51.3 bits (122), Expect = 5e-10
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
           DGD+++   W  T+ GP +TV+E   Y+L L    DYP KPP V+F +      V+    
Sbjct: 34  DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                   L  NW   Y +  IL  L+  +  P
Sbjct: 92  ---ICLDILKENWTASYDVRTILLSLQSLLGEP 121

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 6e-10
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 2   DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHET 61
           +    + + +W   I G   T  EG +++L++    DYP  PP  +F   +    V   +
Sbjct: 29  NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY-PS 87

Query: 62  GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
           G V         +W+   T++ IL  +++ +  P
Sbjct: 88  GTVSLSILEEDKDWRPAITIKQILLGIQELLNEP 121

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 50.6 bits (120), Expect = 1e-09
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
            G DI+   W G I GP  T +EG  + L +    DYP  PP ++F ++I    ++ +TG
Sbjct: 39  VGGDIHR--WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 96

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
            +          W    T+   L  ++  +A P
Sbjct: 97  AICLDILKH--EWSPALTIRTALLSIQAMLADP 127

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 3e-09
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 2   DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN-HE 60
              + I    W   + G   T++EG  +QL       YP   P V F         + + 
Sbjct: 29  SVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS 86

Query: 61  TGVVEPKKFGLLVNWQREYTMEDILTQL 88
            G +      L  +W    +++ +   +
Sbjct: 87  NGHICLSI--LTEDWSPALSVQSVCLSI 112

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-09
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
             +D+    W   I G  N+V +G ++QL +    +Y   PP V+F +      V+  TG
Sbjct: 29  VSEDMM--EWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTG 86

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                       W   YT+  IL  L+  ++ P
Sbjct: 87  QPCIDFLDNPEKWNTNYTLSSILLALQVMLSNP 119

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 46.7 bits (110), Expect = 2e-08
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
            +  +    GT +GP  T +EG  + + +    +YP KPP ++F +++    ++  TG +
Sbjct: 27  SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 86

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                     W    T++  L  L+  + +P
Sbjct: 87  CLDILK--NAWSPVITLKSALISLQALLQSP 115

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 45.9 bits (108), Expect = 5e-08
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
             D++ +  W   IIGP +T +E   ++L L  D++YP KPP V+F S +    V     
Sbjct: 28  LPDNVMV--WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGE 85

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
           +       L   W   Y +  ILT ++     P
Sbjct: 86  I---CLDILQNRWTPTYDVASILTSIQSLFNDP 115

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 45.2 bits (106), Expect = 9e-08
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 3  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
           GDD++   W  TI+GP  + ++G ++ L +    DYP KPP V F +RI    +N    
Sbjct: 26 VGDDLFH--WQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS 83

Query: 63 V 63
          +
Sbjct: 84 I 84

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 2e-07
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
           D DD+   ++   +I P    ++   +       + YP  PP V+  + +    ++ E  
Sbjct: 27  DPDDLL--NFKL-VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGN 83

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
           V       L  +W+   T+  I+  L+     P
Sbjct: 84  V---CLNILREDWKPVLTINSIIYGLQYLFLEP 113

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 43.2 bits (101), Expect = 5e-07
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
            D  +R +  TI GP  + +E  I++L+L+   DYP + P VRF ++I    ++    + 
Sbjct: 28  HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC 87

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                    NW     +  +L  ++  +A+P
Sbjct: 88  LDVLK---TNWSPALQIRTVLLSIQALLASP 115

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 43.2 bits (101), Expect = 5e-07
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 9  MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHET 61
          +  +     GP  T +E   + L +    DYP K PS+ F +RI    V+  +
Sbjct: 25 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS 77

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
           +   +  W GTI G   TV+E   Y+L L     YP   P+V+F +      V+ +    
Sbjct: 26  ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQG--- 82

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                 L   W   Y +  IL  ++  +  P
Sbjct: 83  NISLDILKEKWSALYDVRTILLSIQSLLGEP 113

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-06
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 3   DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
              +I    W   + GP  T +EG  Y  KL   +++P KPPS+   +       N    
Sbjct: 26  LPSNILE--WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLC 83

Query: 63  VVEPKKFGLLVNWQREYTMEDILTQL 88
           +           W   +++  ILT L
Sbjct: 84  LSITDFHP--DTWNPAWSVSTILTGL 107

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 58
              +  W  TI+GP  +V+EG ++ L +    DYP KPP V F +RI    +N
Sbjct: 27 KGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN 80

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
            D       G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 32  VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 91

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                     W    T+  +L  L+  +AA 
Sbjct: 92  CLDILK--DQWAAAMTLRTVLLSLQALLAAA 120

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 2/53 (3%)

Query: 9  MRSWTGTIIGPHNTVHEGRIYQL--KLFCDKDYPEKPPSVRFHSRINMTCVNH 59
                 + G     + G  Y +   L+    YP  PP        +MT    
Sbjct: 46 SSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTG 98

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
           D+  + +W G I  P N  ++   +++++    +YP KPP + F ++I    ++ +  V 
Sbjct: 25  DEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 83

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
            P       NW+     + ++  L   +  P
Sbjct: 84  LPVISAE--NWKPATKTDQVIQSLIALVNDP 112

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 6e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 5   DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
           D+   R +   I GP ++  EG  ++L+LF  ++YP   P VRF ++I    V+    + 
Sbjct: 27  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 86

Query: 65  EPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
                 L   W     +  +L  ++  ++AP
Sbjct: 87  ---LDILKDKWSPALQIRTVLLSIQALLSAP 114

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (78), Expect = 0.001
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 9/103 (8%)

Query: 1   MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
             DG    + S  GTI    +      I  + ++    YP KPP +  +           
Sbjct: 47  HSDGTPQLLLSIYGTISTGEDGSSPHSI-PVIMWVPSMYPVKPPFISINLENFDMNTISS 105

Query: 61  TGVVEPKKFG--------LLVNWQREYTMEDILTQLKKEMAAP 95
           +  ++             L         +  ++ +L   +  P
Sbjct: 106 SLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEP 148

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 5  DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 58
           +  +  W   I GP +T +   ++  KL   KDYP  PP + F   I    + 
Sbjct: 29 SENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.79
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.71
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	94.3
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	91.45
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	91.33
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	89.47
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	86.97

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=1.1e-39  Score=216.42  Aligned_cols=107  Identities=51%  Similarity=0.944  Sum_probs=98.7

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      .+++|.++++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+++||||+.++|.||++++. .++|+|++||
T Consensus        30 ~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~~~~G~icl~~l~-~~~Wsp~~ti  108 (136)
T d1jatb_          30 ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHT-LRDWKRAYTM  108 (136)
T ss_dssp             SSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHH-HHTCCTTCCH
T ss_pred             cCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccccccCCCeEECCCCc-ccCcCccCcH
Confidence            345554455999999999999999999999999999999999999999999999999768999999874 3689999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++||++|+++|.+|++.+++||||++.|
T Consensus       109 ~~IL~~i~~lL~~P~n~~~~q~~~g~~y  136 (136)
T d1jatb_         109 ETLLLDLRKEMATPANKKLRQPKEGETF  136 (136)
T ss_dssp             HHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCCCcC
Confidence            9999999999999999999999999987

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=213.18  Aligned_cols=102  Identities=24%  Similarity=0.472  Sum_probs=97.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||++++.  +.|+|++|++
T Consensus        26 ~~~d~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G~icl~~l~--~~W~p~~~i~  100 (146)
T d1i7ka_          26 ESDNLF--KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILK--EKWSALYDVR  100 (146)
T ss_dssp             ETTEEE--EEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             cCCccc--EEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCC-CCcccccccc--ccCCCCcCHH
Confidence            567888  9999999999999999999999999999999999999999999999997 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+|++++|+|.+|++.|
T Consensus       101 ~il~~i~~ll~~p~~~~p~n~~aa~l~  127 (146)
T d1i7ka_         101 TILLSIQSLLGEPNIDSPLNTHAAELW  127 (146)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCchhHHHHHHh
Confidence            999999999999999999999988654

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=3.5e-38  Score=213.20  Aligned_cols=103  Identities=30%  Similarity=0.581  Sum_probs=98.7

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||+++|.  +.|+|+++|
T Consensus        33 p~~~dl~--~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~-~G~icl~~l~--~~Wsp~~~i  107 (156)
T d2e2ca_          33 PDGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILK--ENWTASYDV  107 (156)
T ss_dssp             ESSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCH
T ss_pred             ECCCccc--EEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCCC-CCCccccccC--CCCCCcccH
Confidence            4678999  9999999999999999999999999999999999999999999999998 9999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      .+||++|+++|.+|++++|+|.+||+.|
T Consensus       108 ~~vl~~i~~ll~~P~~~~p~n~~aa~l~  135 (156)
T d2e2ca_         108 RTILLSLQSLLGEPNNASPLNAQAADMW  135 (156)
T ss_dssp             HHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHH
Confidence            9999999999999999999999988654

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=8.7e-39  Score=214.63  Aligned_cols=106  Identities=24%  Similarity=0.381  Sum_probs=99.1

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+.++|.||+++|...++|+|++||
T Consensus        28 p~~~n~~--~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl  105 (148)
T d1yrva1          28 PVSEDMM--EWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTL  105 (148)
T ss_dssp             ECSTTSC--EEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCH
T ss_pred             ECCCccc--EEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceecCcccccccccCchhhcCccccH
Confidence            3568999  99999999999999999999999999999999999999999999999976899999998644789999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++||.+|+++|.+|+.++|+|++||+.|
T Consensus       106 ~~vL~~I~~ll~~p~~~~p~n~eaa~ly  133 (148)
T d1yrva1         106 SSILLALQVMLSNPVLENPVNLEAARIL  133 (148)
T ss_dssp             HHHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            9999999999999999999999998643

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-38  Score=211.86  Aligned_cols=102  Identities=25%  Similarity=0.398  Sum_probs=97.5

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+..+|.+|++++.  +.|++++||+
T Consensus        32 ~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g~ic~~~~~--~~W~p~~~i~  107 (154)
T d2bepa1          32 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR  107 (154)
T ss_dssp             CSSSSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCChh--heEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCeeCCCCcccccccc--ccCCCcCCHH
Confidence            467888  999999999999999999999999999999999999999999999999768999999987  9999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||.+|+++|.+|++++|+|++|++.
T Consensus       108 ~il~~i~~ll~~p~~~~p~n~eaa~l  133 (154)
T d2bepa1         108 TVLLSLQALLAAAEPDDPQDAVVANQ  133 (154)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCchHHHHHHH
Confidence            99999999999999999999998764

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=208.92  Aligned_cols=103  Identities=21%  Similarity=0.435  Sum_probs=98.3

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|++++.  +.|++++++
T Consensus        26 p~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~-~G~icl~~l~--~~w~p~~~i  100 (149)
T d1j7db_          26 PDESNAR--YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILK--DKWSPALQI  100 (149)
T ss_dssp             ECSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TSCCTTSCH
T ss_pred             ECCCccc--EeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECC-CCcEehHHhc--CCCCCCccH
Confidence            3678999  9999999999999999999999999999999999999999999999997 9999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      .++|.+|+++|.+|+.++|+|.+|++.|
T Consensus       101 ~~il~~i~~ll~~p~~~~p~n~eaa~l~  128 (149)
T d1j7db_         101 RTVLLSIQALLSAPNPDDPLANDVAEQW  128 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTCTTCCSHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHH
Confidence            9999999999999999999999998643

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=8.6e-38  Score=210.40  Aligned_cols=104  Identities=21%  Similarity=0.399  Sum_probs=98.0

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC--CCCCCCCC
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL--LVNWQREY   79 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~--~~~W~p~~   79 (109)
                      ++++|++  .|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|++++..  .+.|++++
T Consensus        26 p~~~~~~--~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~-~g~icl~~l~~~~~~~w~p~~  102 (154)
T d1yh2a1          26 QDKDQMD--DLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSL  102 (154)
T ss_dssp             ESSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGSCTTTSCCCTTS
T ss_pred             ECCcchh--hhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCC-CCCcccccccCCccccCCccc
Confidence            4678999  9999999999999999999999999999999999999999999999998 99999999973  26899999


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           80 TMEDILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        80 ~l~~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      ++.++|++|+++|.+|++++|+|.+|+.+
T Consensus       103 ~i~~il~~i~~ll~~p~~~~p~n~eaa~~  131 (154)
T d1yh2a1         103 NIATVLTSIQLLMSEPNPDDPLMADISSE  131 (154)
T ss_dssp             CHHHHHHHHHHHHHSCCTTSCSCHHHHHH
T ss_pred             cHHHHHHHHHHHhccCCCCCchhHHHHHH
Confidence            99999999999999999999999998764

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=9.5e-38  Score=210.23  Aligned_cols=102  Identities=23%  Similarity=0.458  Sum_probs=97.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|++++.  ..|+|+++|.
T Consensus        28 ~~~n~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~-~G~icl~~~~--~~W~p~~~i~  102 (152)
T d1jata_          28 HDDNLR--YFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLK--TNWSPALQIR  102 (152)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCCBCCGGGT--TTCCTTCCHH
T ss_pred             cCCccc--hhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCC-CCCeeecccc--ccCCchhHHH
Confidence            567888  9999999999999999999999999999999999999999999999997 9999999987  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      +||.+|++||.+|+.++|+|.+||+.|
T Consensus       103 ~il~~i~~ll~~P~~~~p~n~eaa~l~  129 (152)
T d1jata_         103 TVLLSIQALLASPNPNDPLANDVAEDW  129 (152)
T ss_dssp             HHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred             HHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence            999999999999999999999998653

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=7.2e-38  Score=212.65  Aligned_cols=102  Identities=25%  Similarity=0.484  Sum_probs=96.9

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~   83 (109)
                      ++|++  +|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+..+|.||++++.  +.|+|++||.+
T Consensus        40 ~~nl~--~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPni~~~~G~icl~~l~--~~W~p~~si~~  115 (161)
T d2f4za1          40 GGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK--HEWSPALTIRT  115 (161)
T ss_dssp             TTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTSCHHH
T ss_pred             CCccc--eeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEecCCCCCCceECCCCCeecCccc--ccCCCcccHHH
Confidence            46888  999999999999999999999999999999999999999999999997778999999987  88999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           84 ILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        84 il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ||.+|+++|.+|++++|+|.+|+++|
T Consensus       116 iL~~I~~ll~~P~~~dp~n~eaa~l~  141 (161)
T d2f4za1         116 ALLSIQAMLADPVPTDPQDAEVAKMM  141 (161)
T ss_dssp             HHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            99999999999999999999988653

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1e-37  Score=212.10  Aligned_cols=104  Identities=22%  Similarity=0.360  Sum_probs=97.5

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------   71 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-----------   71 (109)
                      +++|++  +|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|+++|..           
T Consensus        29 ~e~nl~--~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~vCl~il~~~~~~~~~~~~~  105 (164)
T d2ucza_          29 SENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELA  105 (164)
T ss_dssp             SSSCCS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT-TSBBCCGGGSCCCSCTTSTTTT
T ss_pred             Cccchh--hhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceEcC-CCCeeeccccCccccccccccc
Confidence            567899  9999999999999999999999999999999999999999999999998 89999999863           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      .+.|+|+++|++||++|+++|.+|+.++++|++||..|
T Consensus       106 ~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~  143 (164)
T d2ucza_         106 EERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW  143 (164)
T ss_dssp             TTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHH
T ss_pred             cccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            25799999999999999999999999999999998643

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=207.57  Aligned_cols=101  Identities=19%  Similarity=0.425  Sum_probs=96.0

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      |++|++  +|+++| ||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||+++|. .+.|++++++.
T Consensus        25 ~~~n~~--~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G~icl~~l~-~~~w~p~~~i~   99 (144)
T d1c4zd_          25 DEANLL--TWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVIS-AENWKPATKTD   99 (144)
T ss_dssp             SCSSSS--EEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TCBBCCTTTS-SSSCCTTCCHH
T ss_pred             CCCcce--EEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCcc-CCcccccccc-CCCCCCcccHH
Confidence            678899  999988 999999999999999999999999999999999999999997 9999999997 46899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||.+|+++|.+|+.++++|.+|+.+
T Consensus       100 ~il~~i~~ll~~p~~~~p~n~~aa~~  125 (144)
T d1c4zd_         100 QVIQSLIALVNDPQPEHPLRADLAEE  125 (144)
T ss_dssp             HHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            99999999999999999999998764

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=208.66  Aligned_cols=101  Identities=31%  Similarity=0.556  Sum_probs=97.1

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  .|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||++++.  +.|+|++|+.
T Consensus        27 ~~~n~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~~l~--~~W~p~~~l~  101 (148)
T d1y6la_          27 KGDNIY--EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS-QGVICLDILK--DNWSPALTIS  101 (148)
T ss_dssp             SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCcccc--eeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECC-CCeEEEEecC--CcCCCcEeHH
Confidence            578999  9999999999999999999999999999999999999999999999998 8999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      ++|.+|+++|.+|+.++|+|.+|+++
T Consensus       102 ~il~~i~~ll~~p~~~~p~n~~aa~~  127 (148)
T d1y6la_         102 KVLLSICSLLTDCNPADPLVGSIATQ  127 (148)
T ss_dssp             HHHHHHHHHHHSCCTTSCSSHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcccccHHHHHH
Confidence            99999999999999999999988764

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=6.1e-38  Score=210.39  Aligned_cols=101  Identities=26%  Similarity=0.518  Sum_probs=96.7

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.  +.|++++++.
T Consensus        28 ~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~-~G~iCl~~l~--~~w~p~~~i~  102 (149)
T d1z3da1          28 TEDNIL--TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQ--NRWSPTYDVA  102 (149)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TCBBCCGGGT--TSCCTTCCHH
T ss_pred             CCCchh--hhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcC-CCCEEecccc--ccCCCCCCHH
Confidence            567888  9999999999999999999999999999999999999999999999997 8999999997  8899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||.+|+++|.+|+.++++|.+|+.+
T Consensus       103 ~il~~i~~ll~~p~~~~p~n~eaa~~  128 (149)
T d1z3da1         103 AILTSIQSLLDEPNPNSPANSLAAQL  128 (149)
T ss_dssp             HHHHHHHHTTSSCCCSSCSCHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCChhhHHHHHH
Confidence            99999999999999999999998764

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2.1e-37  Score=207.72  Aligned_cols=104  Identities=21%  Similarity=0.394  Sum_probs=98.4

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      .+++|++  +|+++|.||+||+|+||+|+++|.||++||++||+|+|.|+++||||+..+|.+|++++.  +.|+|++||
T Consensus        26 ~~~~~~~--~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~~~~~~~~~~~--~~W~p~~ti  101 (149)
T d1fzya_          26 VSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVITL  101 (149)
T ss_dssp             SCSSCSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCCBCCGGGT--TTCCTTCCH
T ss_pred             CCCCchh--EEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccCCcceeechhhc--ccCCCcCCH
Confidence            4677899  999999999999999999999999999999999999999999999999878899999886  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTYF  109 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~  109 (109)
                      ++||.+|+++|.+|++++|+|.+||++|
T Consensus       102 ~~il~~i~~ll~~p~~~~p~n~eaa~~~  129 (149)
T d1fzya_         102 KSALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            9999999999999999999999988653

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1.5e-37  Score=210.73  Aligned_cols=103  Identities=28%  Similarity=0.471  Sum_probs=96.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------   71 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-----------   71 (109)
                      +++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.+|+++|..           
T Consensus        26 ~~~dl~--~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~-~G~vcl~~l~~~~~~~~~~~~~  102 (161)
T d1pzva_          26 DDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERP  102 (161)
T ss_dssp             STTCTT--EEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCT-TSBBCCGGGCCC---------C
T ss_pred             CCCCce--EEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCC-CCccchhhcCCccccccccccc
Confidence            567899  9999999999999999999999999999999999999999999999998 89999999863           


Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      .+.|+|+++|.+||++|+++|.+|+.++++|++||.+
T Consensus       103 ~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l  139 (161)
T d1pzva_         103 EERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM  139 (161)
T ss_dssp             CSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             ccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence            1369999999999999999999999999999998864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=209.82  Aligned_cols=102  Identities=23%  Similarity=0.446  Sum_probs=96.1

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~   83 (109)
                      .+|++  +|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|+++|...++|+|++||.+
T Consensus        33 ~~n~~--~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G~icl~~l~~~~~W~p~~ti~~  109 (156)
T d2uyza1          33 TMNLM--NWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQ  109 (156)
T ss_dssp             CEEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHH
T ss_pred             CCccc--EEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccccccccc-cceeeecccCcccccCCcccHHH
Confidence            34777  9999999999999999999999999999999999999999999999997 99999999975568999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           84 ILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        84 il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      ||.+|+++|.+|++++|+|.+|++.
T Consensus       110 il~~i~~ll~~p~~~~p~n~eaa~~  134 (156)
T d2uyza1         110 ILLGIQELLNEPNIQDPAQAEAYTI  134 (156)
T ss_dssp             HHHHHHHHHHSCCTTSCSCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCccCHHHHHH
Confidence            9999999999999999999998764

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=202.54  Aligned_cols=104  Identities=39%  Similarity=0.794  Sum_probs=91.4

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+..+|.+|.+.+...++|+|++||+
T Consensus        34 ~d~nl~--~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~  111 (139)
T d2a4da1          34 EDMTLT--RWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIK  111 (139)
T ss_dssp             TCTTCC--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHH
T ss_pred             Cccccc--EEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccccCcCCCCEEcceecCcccCCCccCcHH
Confidence            345677  999999999999999999999999999999999999999999999999877888887764336899999999


Q ss_pred             HHHHHHHHHhcCC-CCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAP-HNRKLVQPPEGTYF  109 (109)
Q Consensus        83 ~il~~i~~ll~~p-~~~~~~~~~a~~~~  109 (109)
                      +||++|+++|.+| |.++++|+| ++.|
T Consensus       112 ~iL~~i~slL~~peN~~~p~~~e-~~~y  138 (139)
T d2a4da1         112 VVLQELRRLMMSKENMKLPQPPE-GQCY  138 (139)
T ss_dssp             HHHHHHHHHHTSTTTTTCCCCCT-TCBC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCC-cCcc
Confidence            9999999999998 666666666 5544

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=9.5e-38  Score=210.06  Aligned_cols=102  Identities=24%  Similarity=0.443  Sum_probs=97.6

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM   81 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l   81 (109)
                      ++++|++  +|+++|.||+||||+||+|+++|.||++||++||+|+|.|+++||||+. +|.+|++++.  +.|+|+++|
T Consensus        30 p~~~dl~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~-~G~ic~~~l~--~~W~p~~~l  104 (151)
T d1zdna1          30 PNEEDLT--DLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLK--RDWTAELGI  104 (151)
T ss_dssp             ECSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCHHHHT--TTCCTTCCH
T ss_pred             EcCcchh--eeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCceecC-CCCccccccc--ccCCccccH
Confidence            3678999  9999999999999999999999999999999999999999999999997 8999999997  899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      ++||++|+++|.+|+.++|+|.+||+.
T Consensus       105 ~~il~~i~~~l~~p~~~~p~n~eaa~~  131 (151)
T d1zdna1         105 RHVLLTIKCLLIHPNPESALNEEAGRL  131 (151)
T ss_dssp             HHHHHHHHHHHHSCCGGGCSSHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCchhhHHHHHH
Confidence            999999999999999999999998764

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.8e-37  Score=207.32  Aligned_cols=101  Identities=27%  Similarity=0.560  Sum_probs=96.7

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  .|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.||++++.  +.|+|++++.
T Consensus        26 ~~~n~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G~iCl~~l~--~~w~p~~~i~  100 (147)
T d1z2ua1          26 VGDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTIS  100 (147)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCchh--hhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC-CCCEeeehhc--ccCCCCCCHH
Confidence            567888  9999999999999999999999999999999999999999999999997 9999999997  8899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||.+|+++|.+|+.++++|.+|+..
T Consensus       101 ~Il~~i~~ll~~p~~~~~~n~ea~~~  126 (147)
T d1z2ua1         101 KVLLSICSLLCDPNPDDPLVPEIARI  126 (147)
T ss_dssp             HHHHHHHHHHHSCCTTSCSCHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCcccHHHHHH
Confidence            99999999999999999999998754

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=3.1e-37  Score=207.37  Aligned_cols=101  Identities=28%  Similarity=0.489  Sum_probs=96.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      +++|++  .|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||++++.  +.|+|+++++
T Consensus        28 ~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~-~G~icl~~l~--~~W~p~~~i~  102 (153)
T d1ayza_          28 LPDNVM--VWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQ--NRWTPTYDVA  102 (153)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGT--TTCCTTCCHH
T ss_pred             CCCcHH--hHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCCC-CCcccccccc--ccCCCcCcHH
Confidence            567888  9999999999999999999999999999999999999999999999997 9999999997  8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||.+|+++|.+|+.++++|.+|+..
T Consensus       103 ~il~~i~~ll~~p~~~~~~n~eaa~l  128 (153)
T d1ayza_         103 SILTSIQSLFNDPNPASPANVEAATL  128 (153)
T ss_dssp             HHHHHHHHHHTCCCCSSCSSHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            99999999999999999999998754

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=205.13  Aligned_cols=102  Identities=17%  Similarity=0.338  Sum_probs=96.8

Q ss_pred             CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      +++++|++  +|+++| ||++|+|+||+|+++|.||++||++||+|+|.+++|||||+. +|.||++++.  +.|+|+++
T Consensus        25 ~~~~~~l~--~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~-~G~ic~~~~~--~~W~p~~~   98 (157)
T d1y8xa1          25 FSDPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILR--EDWKPVLT   98 (157)
T ss_dssp             CSSTTCTT--EEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCC
T ss_pred             EcCCCcce--EEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccc-cceeeeeecc--cCCCCCCc
Confidence            35778999  999988 999999999999999999999999999999999999999998 8999999987  89999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           81 MEDILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        81 l~~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      |++||.+|+++|.+|++++|+|.+|++.
T Consensus        99 i~~il~~I~~ll~~Pn~~~p~n~eaa~l  126 (157)
T d1y8xa1          99 INSIIYGLQYLFLEPNPEDPLNKEAAEV  126 (157)
T ss_dssp             HHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCcChHHHHHHHH
Confidence            9999999999999999999999998764

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=191.66  Aligned_cols=86  Identities=19%  Similarity=0.326  Sum_probs=82.1

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc--ccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--NMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i--~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      +++|++  +|+++|.||+||||+||.|+++|.||++||++||+|+|.|++  +||||+. +|+||+++|.  ++|+|++|
T Consensus        30 ~~~~l~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~~-~G~iCl~~l~--~~Wsp~~t  104 (117)
T d2a7la1          30 VQNSIT--QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILT--EDWSPALS  104 (117)
T ss_dssp             CCCSCE--EEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCT-TCBBCCGGGT--TTCCTTSC
T ss_pred             CCCCce--EEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCcC-CCeEEeecCc--CCCCCcCc
Confidence            567888  999999999999999999999999999999999999999987  8999998 9999999997  89999999


Q ss_pred             HHHHHHHHHHHhc
Q 033897           81 MEDILTQLKKEMA   93 (109)
Q Consensus        81 l~~il~~i~~ll~   93 (109)
                      +++||++|++||+
T Consensus       105 i~~vl~~i~~lLs  117 (117)
T d2a7la1         105 VQSVCLSIISMLS  117 (117)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999984

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=203.01  Aligned_cols=101  Identities=19%  Similarity=0.369  Sum_probs=94.5

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME   82 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~   82 (109)
                      |++|++  .|++.| ||++|||+||+|+++|.||++||++||+|+|.|+++||||+. +|.||+++|. .+.|++++|+.
T Consensus        26 ~~~~~~--~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~-~G~icl~~l~-~~~W~p~~~i~  100 (150)
T d1wzva1          26 DDANVL--VWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIIS-SENWKPCTKTC  100 (150)
T ss_dssp             CSSCTT--EEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBCCCGGGC-TTTCCTTCCHH
T ss_pred             CCCceE--EEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC-CCCccccccc-ccCCCchhHHH
Confidence            466888  999855 999999999999999999999999999999999999999997 9999999996 47899999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897           83 DILTQLKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        83 ~il~~i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +||.+|+++|.+|+.++|+|.+|++.
T Consensus       101 ~il~~i~~ll~~p~~~~p~n~eaa~~  126 (150)
T d1wzva1         101 QVLEALNVLVNRPNIREPLRMDLADL  126 (150)
T ss_dssp             HHHHHHHHHHHSCCSSSCSSHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHH
Confidence            99999999999999999999998764

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=192.81  Aligned_cols=91  Identities=32%  Similarity=0.548  Sum_probs=85.4

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC----------
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----------   71 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----------   71 (109)
                      .|++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.||+++|..          
T Consensus        24 ~~~~dl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G~iCl~iL~~~~~~~~~~~~  100 (125)
T d2awfa1          24 IDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEK  100 (125)
T ss_dssp             SSTTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCBBCCGGGSCC---------
T ss_pred             CCCCCce--EEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCC-CCEEEeccccCcccccccccc
Confidence            3677899  9999999999999999999999999999999999999999999999998 99999999852          


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHhcCC
Q 033897           72 -LVNWQREYTMEDILTQLKKEMAAP   95 (109)
Q Consensus        72 -~~~W~p~~~l~~il~~i~~ll~~p   95 (109)
                       .++|+|++|+++||++|++||.+|
T Consensus       101 ~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1         101 PEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             ccCCcCccCcHHHHHHHHHHHhhCc
Confidence             267999999999999999999886

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=5e-36  Score=202.97  Aligned_cols=101  Identities=24%  Similarity=0.380  Sum_probs=94.7

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED   83 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~   83 (109)
                      +||++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+..+|.||+++|.  ++|++++++.+
T Consensus        22 ~d~~~--~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~vcl~il~--~~W~p~~~i~~   97 (158)
T d1yf9a1          22 SDTVA--EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN--QTWTPMYQLEN   97 (158)
T ss_dssp             CSSTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH--HHCCTTCCTHH
T ss_pred             CCCce--EEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCcccccccccc--cccCchHhhhh
Confidence            57899  999999999999999999999999999999999999999999999998768999999997  89999999999


Q ss_pred             HHHH-HHHHhcCCCCCCCCCCCCCCC
Q 033897           84 ILTQ-LKKEMAAPHNRKLVQPPEGTY  108 (109)
Q Consensus        84 il~~-i~~ll~~p~~~~~~~~~a~~~  108 (109)
                      +|+. |+.||.+|+.++|+|++||+.
T Consensus        98 il~~~i~~ll~~P~~~~p~N~eaa~l  123 (158)
T d1yf9a1          98 IFDVFLPQLLRYPNPSDPLNVQAAHL  123 (158)
T ss_dssp             HHHTHHHHHHHSCCSSCCSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcchhHHHHHH
Confidence            9975 677889999999999998764

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=2.1e-34  Score=184.38  Aligned_cols=87  Identities=23%  Similarity=0.440  Sum_probs=82.8

Q ss_pred             CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897            2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYT   80 (109)
Q Consensus         2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~   80 (109)
                      .+++|++  +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++ +||||+. +|.||+++|.  ++|+|++|
T Consensus        22 ~~~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~-~G~iCl~il~--~~Wsp~~t   96 (109)
T d2fo3a1          22 VHPNNIR--IWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLG--DDYNPSLS   96 (109)
T ss_dssp             ECTTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT-TSBBCCGGGT--TTCCTTCC
T ss_pred             EcCCccc--EEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECC-CCeEEeeccc--CCCCccCC
Confidence            3678999  999999999999999999999999999999999999999986 8999998 9999999997  89999999


Q ss_pred             HHHHHHHHHHHhc
Q 033897           81 MEDILTQLKKEMA   93 (109)
Q Consensus        81 l~~il~~i~~ll~   93 (109)
                      ++++|++|++||+
T Consensus        97 i~~vl~~i~~lls  109 (109)
T d2fo3a1          97 ISGLVLSIISMLS  109 (109)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999984

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=181.22  Aligned_cols=101  Identities=14%  Similarity=0.251  Sum_probs=88.2

Q ss_pred             CCCCCceeEEEEEEEC-CCCCCCCCCE-----------EEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCC
Q 033897            3 DGDDIYMRSWTGTIIG-PHNTVHEGRI-----------YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFG   70 (109)
Q Consensus         3 d~~d~~~~~w~~~i~G-p~~t~yegg~-----------~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~   70 (109)
                      +++|++  +|++.|.| |++|||+||.           |+++|.||++||++||+|+|+|+++|||+...+|.||+++|.
T Consensus        32 ~~dnl~--~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~  109 (162)
T d1zuoa1          32 INDSLY--DWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLT  109 (162)
T ss_dssp             ETTEEE--EEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGS
T ss_pred             CCCccc--EEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcceEEEEEEeeccccccCCceeeccccc
Confidence            456888  99999999 8999999986           999999999999999999999999999954448999999996


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhcCCCC--CCCCCCCCC
Q 033897           71 LLVNWQREYTMEDILTQLKKEMAAPHN--RKLVQPPEG  106 (109)
Q Consensus        71 ~~~~W~p~~~l~~il~~i~~ll~~p~~--~~~~~~~a~  106 (109)
                       .++|+|++||++||++|+++|.+|++  +.+.|..++
T Consensus       110 -~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y  146 (162)
T d1zuoa1         110 -KQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQY  146 (162)
T ss_dssp             -TTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCC
T ss_pred             -CCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHH
Confidence             47899999999999999999988765  445555544

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.96  E-value=2.3e-30  Score=174.58  Aligned_cols=92  Identities=24%  Similarity=0.324  Sum_probs=76.6

Q ss_pred             CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-CCCCCCCCCH
Q 033897            3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-LVNWQREYTM   81 (109)
Q Consensus         3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-~~~W~p~~~l   81 (109)
                      +++|++  +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+|++.   .+|+.++.. .++|+|++||
T Consensus        26 ~~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g---~~~~~~l~~~~~~Wsp~~ti  100 (157)
T d2f4wa1          26 LPSNIL--EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT---RLCLSITDFHPDTWNPAWSV  100 (157)
T ss_dssp             ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS---CBC----------CCTTCCH
T ss_pred             cCcccc--eeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC---CeeeeeccccCCCCCccCcH
Confidence            567888  9999999999999999999999999999999999999999988888864   444444322 2789999999


Q ss_pred             HHHHHHHHHHhcCCCCCC
Q 033897           82 EDILTQLKKEMAAPHNRK   99 (109)
Q Consensus        82 ~~il~~i~~ll~~p~~~~   99 (109)
                      ++||++|++||.+|+++.
T Consensus       101 ~~il~~i~~ll~~p~p~~  118 (157)
T d2f4wa1         101 STILTGLLSFMVEKGPTL  118 (157)
T ss_dssp             HHHHHHHHHHHHSCCCCT
T ss_pred             HHHHHHHHHHccCCCCCC
Confidence            999999999999998764

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-20  Score=123.57  Aligned_cols=85  Identities=14%  Similarity=0.218  Sum_probs=74.1

Q ss_pred             CCCCceeEEEEEEECCCCCCCCCCEEEE--EEEccCCCCCCCCccccccc-----cccCCCCCCCCeeeccCCCCCCCC-
Q 033897            4 GDDIYMRSWTGTIIGPHNTVHEGRIYQL--KLFCDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEPKKFGLLVNW-   75 (109)
Q Consensus         4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~--~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~g~ic~~~l~~~~~W-   75 (109)
                      +++..  +|.++|.|+.+++|+||+|.+  .|.||.+||.+||.|.|.+.     .+||||+. +|+||++.|+   +| 
T Consensus        43 ~dg~~--~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~-~G~V~lp~L~---~W~  116 (141)
T d1s1qa_          43 NDGSS--RELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLH---EWK  116 (141)
T ss_dssp             TTSCE--EEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCT-TCBBCCHHHH---TCC
T ss_pred             CCCCc--eEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECC-CCCCcchhhc---CCC
Confidence            44555  899999999999999999998  55589999999999988753     58999997 9999999985   56 


Q ss_pred             CCCCCHHHHHHHHHHHhcC
Q 033897           76 QREYTMEDILTQLKKEMAA   94 (109)
Q Consensus        76 ~p~~~l~~il~~i~~ll~~   94 (109)
                      .+..++.+++..|+.+|++
T Consensus       117 ~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_         117 HPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             TTTCCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHhCC
Confidence            5677999999999999986

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.1e-18  Score=113.61  Aligned_cols=85  Identities=14%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             EEEEEEECCCCCCCCCCE---EEEEEEccCCCCCCCCccccccc-----------cccCCCCCCCCeeeccCCCCCCCCC
Q 033897           11 SWTGTIIGPHNTVHEGRI---YQLKLFCDKDYPEKPPSVRFHSR-----------INMTCVNHETGVVEPKKFGLLVNWQ   76 (109)
Q Consensus        11 ~w~~~i~Gp~~t~yegg~---~~~~i~fp~~yP~~pP~v~f~t~-----------i~Hpnv~~~~g~ic~~~l~~~~~W~   76 (109)
                      +.-+.+.|....+|+|+.   +.+.|-||.+||++||.|.|.++           ++|||||. +|+||++.|.  +-|.
T Consensus        53 ~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~-~G~V~lp~L~--~W~~  129 (152)
T d1uzxa_          53 QLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPILH--CWDP  129 (152)
T ss_dssp             EEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCT-TSCBCCHHHH--SCCT
T ss_pred             ceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCC-CCcEehHHhc--CCCC
Confidence            667889999999999996   67888899999999999999765           56999998 9999999995  4457


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCC
Q 033897           77 REYTMEDILTQLKKEMAAPHNR   98 (109)
Q Consensus        77 p~~~l~~il~~i~~ll~~p~~~   98 (109)
                      ++.+|.+++.+|+.+|.++..|
T Consensus       130 ~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         130 AAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             TTCCHHHHHHHHHTGGGSCCCC
T ss_pred             ccCcHHHHHHHHHHHhcCCCCC
Confidence            8999999999999999987544

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.024  Score=35.92  Aligned_cols=67  Identities=10%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             ECCCCCCCCCC----------EEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCC---CCCCCHH
Q 033897           17 IGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNW---QREYTME   82 (109)
Q Consensus        17 ~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W---~p~~~l~   82 (109)
                      .-+.||-|.|.          .|.+++.+|..||..||.|..-.-- --.-.|. +|.||++.-= ..-|   .|.+.|.
T Consensus        56 sn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi~lPeLdGKTaKMYR-GGkIClt~HF-kPLWarN~PkfGIa  133 (162)
T d2in1a1          56 SNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYR-GGKICLTDHF-KPLWARNVPKFGLA  133 (162)
T ss_dssp             ECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGSSSCSSSCG-GGBCCCCTTS-HHHHHTTTTSCCHH
T ss_pred             cCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcceeccccCCchhhhhc-Cceeeccccc-hhhhhhcCCchhHH
Confidence            34677777764          3457777899999999999764311 0123454 8999997521 1234   4666666


Q ss_pred             HHH
Q 033897           83 DIL   85 (109)
Q Consensus        83 ~il   85 (109)
                      -.+
T Consensus       134 Hal  136 (162)
T d2in1a1         134 HLM  136 (162)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.23  Score=29.22  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             CEEEEEEEccCCCCCCCCccccccc
Q 033897           27 RIYQLKLFCDKDYPEKPPSVRFHSR   51 (109)
Q Consensus        27 g~~~~~i~fp~~yP~~pP~v~f~t~   51 (109)
                      ....+.+.+|++||.++|.+.+...
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeecc
Confidence            5688999999999999999987764

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.33  E-value=0.011  Score=36.56  Aligned_cols=68  Identities=9%  Similarity=0.193  Sum_probs=42.1

Q ss_pred             CCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCC---CCCCCHHHHHHHHHHHhcCCC
Q 033897           24 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNW---QREYTMEDILTQLKKEMAAPH   96 (109)
Q Consensus        24 yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W---~p~~~l~~il~~i~~ll~~p~   96 (109)
                      .....+.+.+.+|.+||..+|.+.....-+.+...  -..++ ..|.  +-|   ...--+.+++..+|..|.+-|
T Consensus        60 ~~~~~i~L~~~lp~~YP~~~P~i~~~~~~~l~~~~--~~~L~-~~l~--~~~~e~~G~~mif~lv~~lqe~L~e~n  130 (137)
T d1ukxa_          60 EVYVQVELRVKCPPTYPDVVPEIDLKNAKGLSNES--VNLLK-SHLE--ELAKKQCGEVMIFELAHHVQSFLSEHN  130 (137)
T ss_dssp             SCSCEEEEEECCCTTTTSSCCCCEEEEEESSSSSH--HHHHH-HHHH--HHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred             cceEEEEEEEECCCCCCcccceEEEecCCCCCHHH--HHHHH-HHHH--HHHHHcCCCEeHHHHHHHHHHHHHHhC
Confidence            34467889999999999999999887643222211  01111 1111  222   234468899999999887643

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.13  Score=31.14  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             CCCEEEEEEEccCCCCCCCCcccccc
Q 033897           25 EGRIYQLKLFCDKDYPEKPPSVRFHS   50 (109)
Q Consensus        25 egg~~~~~i~fp~~yP~~pP~v~f~t   50 (109)
                      ......+.+.+|.+||..+|.|...+
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~~   89 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVRS   89 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEEC
T ss_pred             cCceEEEEEEecCcCCCcCCceeccC
Confidence            34568899999999999999997654

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=0.21  Score=30.28  Aligned_cols=24  Identities=17%  Similarity=0.081  Sum_probs=20.0

Q ss_pred             CEEEEEEEccCCCCCCCCcccccc
Q 033897           27 RIYQLKLFCDKDYPEKPPSVRFHS   50 (109)
Q Consensus        27 g~~~~~i~fp~~yP~~pP~v~f~t   50 (109)
                      -.+.+.+.+|.+||..+|.|...+
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~   91 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS   91 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec
Confidence            457888999999999999987654