Citrus Sinensis ID: 033898


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
MCLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
ccHHHHHHHHHHHHHHHHEEEEEccccccccccccccccEEEEEccccccccccEEEHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccEEEEEEEcccc
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEHEEccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHcccEEEEEEcccc
MCLSSLSLLVFLFQVTYHFfhwkkgtpfaddqgiyngLTWWEQIdngkqltrnrkfLTVVPVVLYLIAShttdyqnpmlFFNTLAVFVLVVAkfpnmhkvrifginadh
MCLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
MClsslsllVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
****SLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGI****
MCLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGIN***
MCLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
MCLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINA**
iiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query109 2.2.26 [Sep-21-2011]
O42901186 Uncharacterized protein C yes no 0.825 0.483 0.444 3e-18
Q5XH57153 ORM1-like protein 1 OS=Xe N/A no 0.825 0.588 0.494 5e-18
Q53FV1153 ORM1-like protein 2 OS=Ho yes no 0.834 0.594 0.489 1e-17
Q9CPZ6153 ORM1-like protein 3 OS=Mu yes no 0.825 0.588 0.483 2e-17
Q6QI25153 ORM1-like protein 3 OS=Ra yes no 0.825 0.588 0.483 3e-17
Q0VD15153 ORM1-like protein 3 OS=Bo yes no 0.825 0.588 0.483 3e-17
Q5E972153 ORM1-like protein 2 OS=Bo no no 0.844 0.601 0.483 4e-17
Q5R570153 ORM1-like protein 3 OS=Po yes no 0.825 0.588 0.483 4e-17
Q8N138153 ORM1-like protein 3 OS=Ho no no 0.825 0.588 0.483 4e-17
D2I2F3153 ORM1-like protein 3 OS=Ai yes no 0.825 0.588 0.483 4e-17
>sp|O42901|YBA9_SCHPO Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.09c PE=2 SV=3 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 60/90 (66%)

Query: 16  TYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 75
           ++  FHW  GTPF  + G Y+ LT WEQ+D G Q T  RK+L V+P++L+L+++H T Y 
Sbjct: 82  SFIMFHWVTGTPFEFNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFLMSTHYTHYN 141

Query: 76  NPMLFFNTLAVFVLVVAKFPNMHKVRIFGI 105
             M   N  A+F++++ K P +H+ RIFGI
Sbjct: 142 GWMFLVNIWALFMVLIPKLPAVHRKRIFGI 171





Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q5XH57|ORML1_XENLA ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1 Back     alignment and function description
>sp|Q53FV1|ORML2_HUMAN ORM1-like protein 2 OS=Homo sapiens GN=ORMDL2 PE=2 SV=2 Back     alignment and function description
>sp|Q9CPZ6|ORML3_MOUSE ORM1-like protein 3 OS=Mus musculus GN=Ormdl3 PE=2 SV=1 Back     alignment and function description
>sp|Q6QI25|ORML3_RAT ORM1-like protein 3 OS=Rattus norvegicus GN=Ormdl3 PE=2 SV=2 Back     alignment and function description
>sp|Q0VD15|ORML3_BOVIN ORM1-like protein 3 OS=Bos taurus GN=ORMDL3 PE=2 SV=1 Back     alignment and function description
>sp|Q5E972|ORML2_BOVIN ORM1-like protein 2 OS=Bos taurus GN=ORMDL2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R570|ORML3_PONAB ORM1-like protein 3 OS=Pongo abelii GN=ORMDL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8N138|ORML3_HUMAN ORM1-like protein 3 OS=Homo sapiens GN=ORMDL3 PE=1 SV=1 Back     alignment and function description
>sp|D2I2F3|ORML3_AILME ORM1-like protein 3 OS=Ailuropoda melanoleuca GN=ORMDL3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query109
118482776127 unknown [Populus trichocarpa] 0.889 0.763 0.979 6e-50
224075186154 predicted protein [Populus trichocarpa] 0.889 0.629 0.979 6e-50
224053743154 predicted protein [Populus trichocarpa] 0.889 0.629 0.969 1e-49
359474131171 PREDICTED: uncharacterized protein C119. 0.990 0.631 0.871 6e-48
225470956157 PREDICTED: uncharacterized protein C119. 0.917 0.636 0.92 1e-47
225426208157 PREDICTED: uncharacterized protein C119. 0.889 0.617 0.938 3e-47
388502058157 unknown [Lotus japonicus] 0.880 0.611 0.937 1e-46
388498352157 unknown [Medicago truncatula] 0.880 0.611 0.916 6e-46
388520763157 unknown [Lotus japonicus] 0.880 0.611 0.916 7e-46
449432032157 PREDICTED: uncharacterized protein C119. 0.880 0.611 0.916 1e-45
>gi|118482776|gb|ABK93306.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 95/97 (97%), Positives = 96/97 (98%)

Query: 13  FQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 72
           F VTYHFFHWKKGTPFADDQGIYNGLTWWEQI+NGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 31  FAVTYHFFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRKFLTVVPVVLYLIASHTT 90

Query: 73  DYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH 109
           DYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH
Sbjct: 91  DYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH 127




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075186|ref|XP_002304572.1| predicted protein [Populus trichocarpa] gi|222842004|gb|EEE79551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224053743|ref|XP_002297957.1| predicted protein [Populus trichocarpa] gi|222845215|gb|EEE82762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474131|ref|XP_003631406.1| PREDICTED: uncharacterized protein C119.09c isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225470956|ref|XP_002266406.1| PREDICTED: uncharacterized protein C119.09c isoform 1 [Vitis vinifera] gi|147833320|emb|CAN64101.1| hypothetical protein VITISV_008727 [Vitis vinifera] gi|297745501|emb|CBI40581.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426208|ref|XP_002262624.1| PREDICTED: uncharacterized protein C119.09c isoform 1 [Vitis vinifera] gi|147807640|emb|CAN68846.1| hypothetical protein VITISV_024149 [Vitis vinifera] gi|297742409|emb|CBI34558.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388502058|gb|AFK39095.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388498352|gb|AFK37242.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388520763|gb|AFK48443.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449432032|ref|XP_004133804.1| PREDICTED: uncharacterized protein C119.09c-like [Cucumis sativus] gi|449477951|ref|XP_004155172.1| PREDICTED: uncharacterized protein C119.09c-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query109
TAIR|locus:2165690154 AT5G42000 "AT5G42000" [Arabido 0.880 0.623 0.895 3.4e-45
TAIR|locus:2035352157 AT1G01230 "AT1G01230" [Arabido 0.880 0.611 0.875 8.1e-44
POMBASE|SPBC119.09c186 SPBC119.09c "ORMDL family prot 0.825 0.483 0.444 4e-19
UNIPROTKB|Q5XH57153 ormdl1 "ORM1-like protein 1" [ 0.825 0.588 0.494 8.3e-19
UNIPROTKB|F1NZ87154 ORMDL1 "Uncharacterized protei 0.825 0.584 0.483 1.4e-18
MGI|MGI:1913862153 Ormdl3 "ORM1-like 3 (S. cerevi 0.825 0.588 0.483 1.4e-18
RGD|1560577153 Ormdl3 "ORM1-like 3 (S. cerevi 0.825 0.588 0.483 2.2e-18
UNIPROTKB|Q0VD15153 ORMDL3 "ORM1-like protein 3" [ 0.825 0.588 0.483 2.8e-18
UNIPROTKB|E2R9D6153 ORMDL3 "Uncharacterized protei 0.825 0.588 0.483 2.8e-18
UNIPROTKB|F8VXD5119 ORMDL2 "ORM1-like protein 2" [ 0.834 0.764 0.489 2.8e-18
TAIR|locus:2165690 AT5G42000 "AT5G42000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 86/96 (89%), Positives = 90/96 (93%)

Query:    13 FQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 72
             F VTYH FHWKKGTPF DDQG+YN LTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct:    58 FTVTYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 117

Query:    73 DYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 108
             DYQ+PMLF NTLAVFV+VVAKFP+MHKVRIFGIN D
Sbjct:   118 DYQHPMLFLNTLAVFVMVVAKFPHMHKVRIFGINGD 153




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0005783 "endoplasmic reticulum" evidence=ISS
GO:0006457 "protein folding" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2035352 AT1G01230 "AT1G01230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC119.09c SPBC119.09c "ORMDL family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XH57 ormdl1 "ORM1-like protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZ87 ORMDL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1913862 Ormdl3 "ORM1-like 3 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1560577 Ormdl3 "ORM1-like 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VD15 ORMDL3 "ORM1-like protein 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9D6 ORMDL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F8VXD5 ORMDL2 "ORM1-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query109
pfam04061135 pfam04061, ORMDL, ORMDL family 4e-44
COG5081180 COG5081, COG5081, Predicted membrane protein [Func 8e-25
>gnl|CDD|190849 pfam04061, ORMDL, ORMDL family Back     alignment and domain information
 Score =  139 bits (353), Expect = 4e-44
 Identities = 48/87 (55%), Positives = 61/87 (70%)

Query: 15  VTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDY 74
            +Y FFHW KGTPF  DQG Y+ LT WEQID G Q T  RKFLTVVP+VL+L+++H T Y
Sbjct: 49  GSYIFFHWVKGTPFEFDQGAYDNLTMWEQIDEGAQYTPARKFLTVVPIVLFLLSTHYTHY 108

Query: 75  QNPMLFFNTLAVFVLVVAKFPNMHKVR 101
              +   N +A+ V+V+ K P MH+VR
Sbjct: 109 DLTLFIINLIALLVVVIPKLPFMHRVR 135


Evidence form suggests that ORMDLs are involved in protein folding in the ER. Orm proteins have been identified as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase, the first and rate-limiting enzyme in sphingolipid production. This novel and conserved protein complex, has been termed the SPOTS complex (serine palmitoyltransferase, Orm1/2, Tsc3, and Sac1). Length = 135

>gnl|CDD|227413 COG5081, COG5081, Predicted membrane protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 109
KOG3319153 consensus Predicted membrane protein [Function unk 100.0
PF04061136 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 b 100.0
COG5081180 Predicted membrane protein [Function unknown] 100.0
>KOG3319 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=3.9e-60  Score=355.93  Aligned_cols=102  Identities=58%  Similarity=0.991  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCCCCcccceeehhhHHHHHHHhhcccCCCCcchhhhHHHh
Q 033898            7 SLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAV   86 (109)
Q Consensus         7 ~~~i~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~q~TptrKFL~~vPIvLFllathyt~yd~~~f~iN~~~l   86 (109)
                      -+|++||++||+||||+|||||++|||+||+||||||||+|.||||+||||+++||+||++||||||||..+|++|++|+
T Consensus        52 ltnl~h~~~tyi~fH~vkGtPF~~d~g~y~~lT~WEQid~g~q~T~~RKFLtivPIvLfl~~s~yt~y~~~~F~~N~~sl  131 (153)
T KOG3319|consen   52 LTNLIHNIGTYIFFHWVKGTPFEDDQGAYRLLTHWEQIDDGVQYTPSRKFLTIVPIVLFLLASHYTKYDHPLFLLNTLSL  131 (153)
T ss_pred             HHHHHHHHhHheeEEEecCCCCcCCCcHhhhccHHHHhccccccccchhhhhHHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCccceeeeeccccC
Q 033898           87 FVLVVAKFPNMHKVRIFGINAD  108 (109)
Q Consensus        87 ~~vviPKLP~~HrvRifGin~~  108 (109)
                      ++|++||||+||||||||||||
T Consensus       132 ~~v~iPKlp~~H~vRIfgIn~~  153 (153)
T KOG3319|consen  132 FVVVIPKLPQMHGVRIFGINKY  153 (153)
T ss_pred             HhhhhccccccceEEEecccCC
Confidence            9999999999999999999997



>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates Back     alignment and domain information
>COG5081 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00