Citrus Sinensis ID: 033906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIRSG
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
megdifsgignngtqVNGRVMQTFQRSFGQVQDILDQNRLLINEINqnheskipdnltrNVGLIKELNNNIRRVVNLYADLSTSfsrsvegsledesagkasQKRIRSG
Flexible Loop (DISEMBL)
megdifsgignngtqvNGRVMQTFQRSFGQVQDILDQNRLLINEInqnheskipdnltRNVGLIKELNNNIRRVVNLYADLSTSfsrsvegsledesagkasqkrirsg
Low Complexity Region (SEG)
MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIRSG
Disordered region (IsUnstruct)
*************TQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLS***************************
Disordered Region (DISOPRED)
******************RVMQTFQRSFGQVQDILDQNRLLINEIN******I**NLTRNVGLIKELNNNIRRVVNLYADLSTS*************************
Disordered Region (DISEMBL)
MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTS*************************
Disordered Region (DISPRO)
**************QVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTSF************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLxxxxxxxxxxxxxxxxxxxxxFSRSVEGSLEDESAGKASQKRIRSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q570U6	114	Protein ELF4-LIKE 4 OS=Ar	yes	no	0.990	0.947	0.678	9e-36
Q8S8F5	109	Protein ELF4-LIKE 3 OS=Ar	no	no	1.0	1.0	0.623	4e-33
Q94BS8	119	Protein ELF4-LIKE 2 OS=Ar	no	no	0.990	0.907	0.655	5e-33
O04211	111	Protein EARLY FLOWERING 4	no	no	0.614	0.603	0.537	6e-16
O80877	125	Protein ELF4-LIKE 1 OS=Ar	no	no	0.651	0.568	0.492	2e-13

>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1

 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 92/115 (80%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD+ SG G+    ++G+++Q+FQ+SF  VQDILDQNRLLINEINQNHESK PDNL RN
Sbjct: 1   MEGDVLSGFGDR-HNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLIKELNNNIRRV +LY DLS SF+RSV+ S E ES+      GKA+QKR RSG
Sbjct: 60  VGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 87/109 (79%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD  S +  +G Q++G+++QTF++SF QVQ+ILD NRLLINEINQNHESKIPDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIRSG 109
           VGLI+ELNNN+RRV +LY DLS +FS+S+E S E +S+     +RIR  
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIRPA 109

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 8/116 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD++SG G    Q++G+++Q FQ+SF QVQDILDQNRLLINEINQNHESK  D+L RN
Sbjct: 5   MEGDVYSGFGER-YQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRN 63

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKA-SQKRIRSG 109
           VGLI+ELNNNIR V +LY DLS SF+RSV+ S E ES       GKA +QKR RSG
Sbjct: 64  VGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 54/67 (80%)

Query: 20 VMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYA 79
          + +   R+F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VVN+Y+
Sbjct: 25 MWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYS 84

Query: 80 DLSTSFS 86
          DL+TSFS
Sbjct: 85 DLNTSFS 91

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. Required for responsiveness to continuous red, by regulating phytochrome B (phyB) signaling (including during seedling de-etiolation) and gene expression. Mediates both entrainment to an environmental cycle and circadian rhythm sustainability under constant conditions. Controls flowering time. Necessary for light-induced expression of both CCA1 and LHY.

Arabidopsis thaliana (taxid: 3702)

>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%)

Query: 20  VMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYA 79
           V  T    F + Q  LDQNR LI  +N+NH S+IPDN++RNVGLI E+N NI +V+ +Y+
Sbjct: 37  VWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYS 96

Query: 80  DLSTSFSRSVE 90
           DLS +F++  +
Sbjct: 97  DLSLNFAKKFD 107

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255560649	114	conserved hypothetical protein [Ricinus	0.990	0.947	0.791	1e-41
217793794	114	ELF4-like protein [Gossypium arboreum]	0.990	0.947	0.782	4e-41
225442150	114	PREDICTED: protein ELF4-LIKE 4-like isof	0.990	0.947	0.765	4e-41
217794200	109	ELF4-like protein [Solanum tuberosum]	0.963	0.963	0.771	1e-40
217793731	114	ELF4-like protein [Citrus sinensis]	0.990	0.947	0.817	1e-40
224054114	114	predicted protein [Populus trichocarpa]	0.990	0.947	0.765	5e-40
224070819	114	predicted protein [Populus trichocarpa]	0.990	0.947	0.756	8e-40
225444780	114	PREDICTED: protein ELF4-LIKE 4 [Vitis vi	0.972	0.929	0.743	1e-38
217793895	116	ELF4-like protein [Hedyotis terminalis]	1.0	0.939	0.698	2e-37
224069114	114	predicted protein [Populus trichocarpa]	0.990	0.947	0.686	2e-36

>gi|255560649|ref|XP_002521338.1| conserved hypothetical protein [Ricinus communis] gi|223539416|gb|EEF41006.1| conserved hypothetical protein [Ricinus communis]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 102/115 (88%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD+FSGIGN GTQV+G+V+QT Q+SF QVQDILDQNRLLINEINQNHESKIPDNLTRN
Sbjct: 1   MEGDLFSGIGN-GTQVDGKVLQTVQKSFMQVQDILDQNRLLINEINQNHESKIPDNLTRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLI+ELNNNIRRVV+LYADLST+FSRS+E S E ES+      GK +QKRIRSG
Sbjct: 60  VGLIRELNNNIRRVVDLYADLSTNFSRSMEASSEGESSGILKSNGKGNQKRIRSG 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793794|gb|ACK56111.1| ELF4-like protein [Gossypium arboreum]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 100/115 (86%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGDI SG GN G QV+G+V+QTFQ+SF QVQDILDQNRLLINEINQNHESKIPDNL+RN
Sbjct: 1   MEGDICSGFGNGG-QVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLSRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLIKELNNNIRRV +LYADLS+SF+RS+E S E +SA      GKASQKRIRSG
Sbjct: 60  VGLIKELNNNIRRVADLYADLSSSFTRSMEASSEGDSAGMYEPDGKASQKRIRSG 114

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442150|ref|XP_002275459.1| PREDICTED: protein ELF4-LIKE 4-like isoform 2 [Vitis vinifera] gi|225442152|ref|XP_002275438.1| PREDICTED: protein ELF4-LIKE 4-like isoform 1 [Vitis vinifera]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           M+GDIFSGIGN GTQV+ +V+QTF +SF QVQ++LDQNRLLINEINQNHESKIPDNL RN
Sbjct: 1   MDGDIFSGIGN-GTQVDSKVLQTFHKSFVQVQNLLDQNRLLINEINQNHESKIPDNLNRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLI+ELNNNIRRVV+LY+DLS+SF++SVE SLE ESA      GKASQKRIR G
Sbjct: 60  VGLIRELNNNIRRVVDLYSDLSSSFAKSVEASLEAESAGTLKSDGKASQKRIRYG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217794200|gb|ACK56123.1| ELF4-like protein [Solanum tuberosum]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 96/105 (91%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD FS +GNNGTQ++G+V QTFQ+SF QVQ+ILDQNRLLINEINQNHESKIPDNL+RN
Sbjct: 1   MEGDTFSVLGNNGTQIDGKVFQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRN 60

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKR 105
           VGLI+ELNNNIRRVV+LYADLS SF++SV+ S E +S+GKA+ KR
Sbjct: 61  VGLIRELNNNIRRVVDLYADLSCSFTKSVDASSEGDSSGKATHKR 105

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793731|gb|ACK56109.1| ELF4-like protein [Citrus sinensis]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 103/115 (89%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGDIFSGIGN GTQV+G+V+QTF++SFGQVQDILDQNRLLINEINQNHESK+PDNLTRN
Sbjct: 1   MEGDIFSGIGN-GTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLED------ESAGKASQKRIRSG 109
           VGLIKELNNNIRRVV+LYADLS+SF+RSVE S E        S GKASQKRIRSG
Sbjct: 60  VGLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054114|ref|XP_002298099.1| predicted protein [Populus trichocarpa] gi|222845357|gb|EEE82904.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 100/115 (86%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD+FSG+ N G QV+G+V+QTFQ+SF QVQDILDQNRLLINEINQNHESKIPDNLTRN
Sbjct: 1   MEGDLFSGLSN-GNQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLTRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLIKELNNNIRRVV+LYADLS +F+RS+E S E ES+      GKA+ KRIRSG
Sbjct: 60  VGLIKELNNNIRRVVDLYADLSNNFTRSMEPSSEGESSGILKSNGKANSKRIRSG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070819|ref|XP_002303249.1| predicted protein [Populus trichocarpa] gi|222840681|gb|EEE78228.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 101/115 (87%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD+F G+ +NG QV+G+V+QTFQ+SF QVQDILDQNRLLINEINQNHESKIPDNLTRN
Sbjct: 1   MEGDLFPGL-SNGNQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLTRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLIKELNNNIRRVV+LYADLS++F+RS+E S E ES+      GKA+ KRIRSG
Sbjct: 60  VGLIKELNNNIRRVVDLYADLSSNFTRSMEPSSEGESSGILKSNGKANSKRIRSG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444780|ref|XP_002279914.1| PREDICTED: protein ELF4-LIKE 4 [Vitis vinifera] gi|297738586|emb|CBI27831.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/113 (74%), Positives = 99/113 (87%), Gaps = 7/113 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD FSG+GN GTQ++G+V+QTFQ+SF QVQ+ILDQNRLLINEINQNHESKIPDNL+RN
Sbjct: 1   MEGDTFSGLGN-GTQIDGKVLQTFQKSFVQVQNILDQNRLLINEINQNHESKIPDNLSRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIR 107
           VGLI+ELNNNIRRVV+LYADLSTSF++SV+GS E +S+      GKA  KR R
Sbjct: 60  VGLIRELNNNIRRVVDLYADLSTSFTKSVDGSSEGDSSGALRSDGKAGHKRNR 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793895|gb|ACK56113.1| ELF4-like protein [Hedyotis terminalis]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 99/116 (85%), Gaps = 7/116 (6%)

Query: 1   MEGDIFSG-IGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTR 59
           MEGD  SG +GN  TQ++G+VMQTFQ+SF QVQ+ILDQNRLLINEINQNHESK+PDNL+R
Sbjct: 1   MEGDASSGGLGNGTTQIDGKVMQTFQKSFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60

Query: 60  NVGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAG------KASQKRIRSG 109
           NVGLI+ELNNNI+RVVNLY+DLS+SF++SV+GS E +S+G      KA  KR R+G
Sbjct: 61  NVGLIRELNNNIKRVVNLYSDLSSSFTKSVDGSSEGDSSGALKSDEKAGHKRTRAG 116

Source: Hedyotis terminalis

Species: Hedyotis terminalis

Genus: Hedyotis

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069114|ref|XP_002326278.1| predicted protein [Populus trichocarpa] gi|222833471|gb|EEE71948.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 97/115 (84%), Gaps = 7/115 (6%)

Query: 1   MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
           MEGD FSG+GN GTQ++G+++QTFQ++F QVQ+ILDQNRLLINEINQNHESKIPDNL+RN
Sbjct: 1   MEGDTFSGLGN-GTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSRN 59

Query: 61  VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
           VGLI+ELNNNIRRVV+LYADLSTSF++S++ S E +S+      GK   KR R  
Sbjct: 60  VGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRPA 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:505006126	114	ELF4-L4 "AT1G17455" [Arabidops	0.990	0.947	0.678	3.6e-34
TAIR|locus:505006240	109	ELF4-L3 "AT2G06255" [Arabidops	0.981	0.981	0.635	2.3e-32
TAIR|locus:2030165	119	ELF4-L2 "AT1G72630" [Arabidops	0.990	0.907	0.655	6e-32
TAIR|locus:2061226	111	ELF4 "AT2G40080" [Arabidopsis	0.770	0.756	0.476	5.8e-18
TAIR|locus:2045673	125	ELF4-L1 "AT2G29950" [Arabidops	0.651	0.568	0.492	8.8e-15

TAIR|locus:505006126 ELF4-L4 "AT1G17455" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 78/115 (67%), Positives = 92/115 (80%)

Query:     1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
             MEGD+ SG G+    ++G+++Q+FQ+SF  VQDILDQNRLLINEINQNHESK PDNL RN
Sbjct:     1 MEGDVLSGFGDRHN-MDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRN 59

Query:    61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAG------KASQKRIRSG 109
             VGLIKELNNNIRRV +LY DLS SF+RSV+ S E ES+G      KA+QKR RSG
Sbjct:    60 VGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:505006240 ELF4-L3 "AT2G06255" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 68/107 (63%), Positives = 87/107 (81%)

Query:     1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
             MEGD  S +  +G Q++G+++QTF++SF QVQ+ILD NRLLINEINQNHESKIPDNL RN
Sbjct:     1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query:    61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIR 107
             VGLI+ELNNN+RRV +LY DLS +FS+S+E S E +S+     +RIR
Sbjct:    61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIR 107

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030165 ELF4-L2 "AT1G72630" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query:     1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
             MEGD++SG G    Q++G+++Q FQ+SF QVQDILDQNRLLINEINQNHESK  D+L RN
Sbjct:     5 MEGDVYSGFGER-YQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRN 63

Query:    61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAG------KAS-QKRIRSG 109
             VGLI+ELNNNIR V +LY DLS SF+RSV+ S E ES G      KA+ QKR RSG
Sbjct:    64 VGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:2061226 ELF4 "AT2G40080" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 40/84 (47%), Positives = 58/84 (69%)

Query:    22 QTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADL 81
             +   R+F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VVN+Y+DL
Sbjct:    27 ENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDL 86

Query:    82 STSFSRSVEGSLEDESAGKASQKR 105
             +TSFS    G       G A+  R
Sbjct:    87 NTSFSSGFHGGKNGHDGGGAAGTR 110

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009648 "photoperiodism" evidence=IEP;IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

TAIR|locus:2045673 ELF4-L1 "AT2G29950" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 35/71 (49%), Positives = 50/71 (70%)

Query:    20 VMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYA 79
             V  T    F + Q  LDQNR LI  +N+NH S+IPDN++RNVGLI E+N NI +V+ +Y+
Sbjct:    37 VWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYS 96

Query:    80 DLSTSFSRSVE 90
             DLS +F++  +
Sbjct:    97 DLSLNFAKKFD 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.132   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109       109   0.00091  102 3  11 23  0.50    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  436 (46 KB)
  Total size of DFA:  85 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.59u 0.13s 14.72t   Elapsed:  00:00:00
  Total cpu time:  14.59u 0.13s 14.72t   Elapsed:  00:00:00
  Start:  Fri May 10 08:03:57 2013   End:  Fri May 10 08:03:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q570U6	EF4L4_ARATH	No assigned EC number	0.6782	0.9908	0.9473	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
pfam07011	89	pfam07011, DUF1313, Protein of unknown function (D	4e-38

>gnl|CDD|191668 pfam07011, DUF1313, Protein of unknown function (DUF1313)

 Score =  122 bits (309), Expect = 4e-38
 Identities = 63/89 (70%), Positives = 72/89 (80%)

Query: 13  GTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIR 72
               +G+V QTFQRSF QVQ +LDQNRLLI EINQNHES+IPDNL+RNVGLI+ELN NI 
Sbjct: 1   AAGEDGKVWQTFQRSFVQVQSVLDQNRLLIQEINQNHESRIPDNLSRNVGLIRELNGNIS 60

Query: 73  RVVNLYADLSTSFSRSVEGSLEDESAGKA 101
           RVV+LY+DLS SFSRSV  S E +S G A
Sbjct: 61  RVVSLYSDLSGSFSRSVRASREGDSTGTA 89

This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	100.0
PF05030	65	SSXT: SSXT protein (N-terminal region); InterPro:	88.56
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	84.02
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	81.28

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=100.00  E-value=1.8e-54  Score=303.23  Aligned_cols=86  Identities=74%  Similarity=1.046  Sum_probs=83.7

Q ss_pred             cccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHhhhHHHHHHHHhhhhhhhhhhccCcc
Q 033906           14 TQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTSFSRSVEGSL   93 (109)
Q Consensus        14 ~~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~sF~~~~~~ss   93 (109)
                      ++||+|+|+||+|+|+|||+||||||+||+|||||||||+||+|+|||+||||||+||+|||+||+|||++|+++|++++
T Consensus         1 ~~~d~~~~~tf~~sF~qVQ~iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~sFs~~~~~~~   80 (87)
T PF07011_consen    1 EQGDGKVWQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDLYSDLSSSFSKSVEQSS   80 (87)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhh
Q 033906           94 EDESAG   99 (109)
Q Consensus        94 eg~s~~   99 (109)
                      +|++++
T Consensus        81 ~g~~~~   86 (87)
T PF07011_consen   81 EGDSSG   86 (87)
T ss_pred             ccCcCC
Confidence            999874

The function of this family is unknown.

>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []

Probab=88.56  E-value=0.44  Score=32.16  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhHHHHHHHhhccc-cCCCCchhhhHHHHHHHhhhH
Q 033906           29 GQVQDILDQNRLLINEINQNHE-SKIPDNLTRNVGLIKELNNNI   71 (109)
Q Consensus        29 ~qVQ~iLDqNR~LI~EINqNHe-Sr~PdnL~RNV~LIrELN~NI   71 (109)
                      .+||.+||.|.-||+-|.+++. .|.+|-    |..-+-|..|+
T Consensus         9 ~~IQk~LdEN~~LI~~I~e~qn~Gr~~Ec----~qyq~~LhrNL   48 (65)
T PF05030_consen    9 EQIQKMLDENDQLIQCIQEYQNKGRAQEC----VQYQQILHRNL   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHHH
Confidence            5799999999999999999875 333332    33445555554

The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=84.02  E-value=1.2  Score=31.91  Aligned_cols=38  Identities=37%  Similarity=0.415  Sum_probs=25.6

Q ss_pred             chhhhHHHHHHHhh--------hHHHHHHHHhhhhhhhhhhccCcc
Q 033906           56 NLTRNVGLIKELNN--------NIRRVVNLYADLSTSFSRSVEGSL   93 (109)
Q Consensus        56 nL~RNV~LIrELN~--------NI~rVv~LYsdLS~sF~~~~~~ss   93 (109)
                      =|-+|=.||.|+|.        |+.|=|.|-++|..+.++.|+-.+
T Consensus        21 iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~lY~   66 (87)
T PF07011_consen   21 ILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDLYS   66 (87)
T ss_pred             HHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHHHH
Confidence            35667777777775        366777777777777777665433

The function of this family is unknown.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=81.28  E-value=1.7  Score=28.58  Aligned_cols=22  Identities=18%  Similarity=0.584  Sum_probs=18.3

Q ss_pred             HHHHhhhHHHHHHHHhhhhhhh
Q 033906           64 IKELNNNIRRVVNLYADLSTSF   85 (109)
Q Consensus        64 IrELN~NI~rVv~LYsdLS~sF   85 (109)
                      |.+|+.||++|++||.-.|-.+
T Consensus        30 ve~i~envk~ll~lYE~Vs~~i   51 (55)
T PF05377_consen   30 VEKIEENVKDLLSLYEVVSNQI   51 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            5678999999999999877644

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00