Citrus Sinensis ID: 033908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Secondary Structure (PSIPRED)
cEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccccEccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mriydslvtfredktylrkfkplqvvfpqwlqdvgfynirpelqsadpwkvrivkdvpqqepgsgdcgVFMLMFTMYLMFGLKldfdsshghyfrkkiavdifpgdial
Flexible Loop (DISEMBL)
mriydslvtfredktylrkfkplqvvFPQWLQDVGFYNIRPelqsadpwkVRIVKDvpqqepgsgDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Low Complexity Region (SEG)
MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Disordered region (IsUnstruct)
**IYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQ*PGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPG****
Disordered Region (DISOPRED)
MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Disordered Region (DISEMBL)
MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Disordered Region (DISPRO)
MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q94F30	489	Ubiquitin-like-specific p	yes	no	0.522	0.116	0.413	6e-06

>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 46  ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
           A+ W +  V+D+PQQ+ G  DCG+FML +  +   GL L F   H  YFR + A +I 
Sbjct: 428 ANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEIL 484

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
241678633	221	sentrin/sumo-specific protease, putative	0.871	0.429	0.326	1e-06
307215035	571	Sentrin-specific protease 1 [Harpegnatho	0.669	0.127	0.373	5e-06
255071543	869	predicted protein [Micromonas sp. RCC299	0.825	0.103	0.336	8e-06
255070579	254	predicted protein [Micromonas sp. RCC299	0.899	0.385	0.330	1e-05
384247142	209	cysteine proteinase [Coccomyxa subellips	0.541	0.282	0.466	2e-05
241122779	384	sentrin/sumo-specific protease, putative	0.697	0.197	0.384	2e-05
294462241	209	unknown [Picea sitchensis]	0.495	0.258	0.454	3e-05
322790911	589	hypothetical protein SINV_12294 [Solenop	0.706	0.130	0.354	3e-05
332030615	565	Sentrin-specific protease 1 [Acromyrmex	0.706	0.136	0.367	3e-05
241048555	275	sentrin/sumo-specific protease, putative	0.853	0.338	0.313	4e-05

>gi|241678633|ref|XP_002412604.1| sentrin/sumo-specific protease, putative [Ixodes scapularis] gi|215506406|gb|EEC15900.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 4   YDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPG 63
           YDS+ + RE    L K   LQ+      QD   + +  E     PWK++++ D+PQQ  G
Sbjct: 124 YDSMGSSRERHNCLHK---LQLYLEAESQDKRGHGLDWE-----PWKLQVISDLPQQHNG 175

Query: 64  SGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI 107
           S DCG+F   +   +    K+ F   H  YFRK++  +I  G +
Sbjct: 176 S-DCGMFTCQYAECVSRDAKISFGQQHMPYFRKRVVYEILHGQL 218

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215035|gb|EFN89862.1| Sentrin-specific protease 1 [Harpegnathos saltator]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 29  QWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDS 88
           Q+LQD    + + +  + + WK+++ KD+PQQ  GS DCGVF  MF  Y+    K+ F  
Sbjct: 494 QYLQDESL-DKKKQTYNMNDWKLQVAKDIPQQMNGS-DCGVFSCMFAEYICANKKITFTQ 551

Query: 89  SHGHYFRKKIAVDIF 103
               YFR K+  +I 
Sbjct: 552 QDMPYFRNKMVYEIL 566

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255071543|ref|XP_002499446.1| predicted protein [Micromonas sp. RCC299] gi|226514708|gb|ACO60704.1| predicted protein [Micromonas sp. RCC299]

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 1   MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQ 60
           +R YDSL+   +DK  +           +W++D  + N +      + W V I KD+P+Q
Sbjct: 774 VRFYDSLLG--DDKGLVEDLL-------RWVRD-EWKNKKDADVDTESWSVEIPKDIPRQ 823

Query: 61  EPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVD 101
             G  DCGVFML +  Y+  G  L F      YFR++I  D
Sbjct: 824 MNGC-DCGVFMLKYADYIATGCPLTFHQRDMEYFRRRIVAD 863

Source: Micromonas sp. RCC299

Species: Micromonas sp. RCC299

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|255070579|ref|XP_002507371.1| predicted protein [Micromonas sp. RCC299] gi|226522646|gb|ACO68629.1| predicted protein [Micromonas sp. RCC299]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 11/109 (10%)

Query: 1   MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQ 60
           +R YDSL+   +DK  ++          +W++D  + N +      D W V I KD+P+Q
Sbjct: 151 VRFYDSLLG--DDKGLVKDL-------LRWVRDE-WKNKKDADVDTDGWSVEIPKDIPRQ 200

Query: 61  EPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL 109
             G  DCGVFML +  Y+  G  L F      YFR++I  D     I++
Sbjct: 201 MNGC-DCGVFMLKYADYIATGCPLTFHQRDMEYFRQRIVADAMEKGISV 248

Source: Micromonas sp. RCC299

Species: Micromonas sp. RCC299

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|384247142|gb|EIE20629.1| cysteine proteinase [Coccomyxa subellipsoidea C-169]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 49  WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA 108
           W +R  +DVP Q+ G  DCGVF L F  +L  G  +DF      +FR KIA DI  G IA
Sbjct: 151 WPIRYPRDVPLQQNGC-DCGVFALQFAEHLSRGAPMDFSQLDMPFFRAKIAADIMTGRIA 209

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|241122779|ref|XP_002403685.1| sentrin/sumo-specific protease, putative [Ixodes scapularis] gi|215493493|gb|EEC03134.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 26  VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 85
           V  Q+LQD        +L  +D W    VKD+PQQ  GS DCG+F L +  Y+    K+ 
Sbjct: 304 VLRQYLQDESRDKRATDLDLSD-WTFEAVKDIPQQMNGS-DCGMFALKYAEYITRDAKIT 361

Query: 86  FDSSHGHYFRKKIAVDIF 103
           FD  H  YFR+++  +I 
Sbjct: 362 FDQMHMPYFRRRMVYEIL 379

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|294462241|gb|ADE76671.1| unknown [Picea sitchensis]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 49  WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
           W++ +V+D+PQQE GS DCG+FM+ +  +   GL L F  +H  YFRK+ A +I 
Sbjct: 151 WEMELVEDLPQQENGS-DCGMFMIKYADFHSRGLPLSFFQTHMPYFRKRTAKEIL 204

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|322790911|gb|EFZ15577.1| hypothetical protein SINV_12294 [Solenopsis invicta]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 29  QWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDS 88
           Q+LQD    + + +  + + WK++  K++PQQ  GS DCGVF  MF  Y+    K+ F  
Sbjct: 512 QYLQDESL-DKKKQPYNMNDWKLQSAKNIPQQMNGS-DCGVFSCMFAEYVCANKKITFTQ 569

Query: 89  SHGHYFRKKIAVDIFPGDI 107
               YFR K+  +I  G +
Sbjct: 570 DDMPYFRNKMVYEILKGKL 588

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030615|gb|EGI70303.1| Sentrin-specific protease 1 [Acromyrmex echinatior]

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 29  QWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDS 88
           Q+LQD      +     +D WK++  K++PQQ  GS DCGVF  MF  Y     K+ F  
Sbjct: 488 QYLQDESLDKKKQSYDMSD-WKLQSAKNIPQQMNGS-DCGVFSCMFAEYACANKKITFTQ 545

Query: 89  SHGHYFRKKIAVDIFPGDI 107
               YFR K+  +I  G +
Sbjct: 546 DDMPYFRNKMVYEILKGKL 564

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241048555|ref|XP_002407293.1| sentrin/sumo-specific protease, putative [Ixodes scapularis] gi|215492173|gb|EEC01814.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 4   YDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPG 63
           YDS+    E    L K   LQ+      QD   + +  E     PWK++++ D+PQQ  G
Sbjct: 178 YDSMGNSHERHNCLHK---LQLYLEAESQDKRGHGLDWE-----PWKLQVISDLPQQHNG 229

Query: 64  SGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPG 105
           S DCG+F   +   +    ++ F   H  YFRK++  +I  G
Sbjct: 230 S-DCGMFTCQYAECVSRDAEISFGKQHMPYFRKRVVYEILHG 270

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
FB|FBgn0031208	480	CG11023 [Drosophila melanogast	0.779	0.177	0.287	2.4e-07
TAIR|locus:2130864	489	ESD4 "EARLY IN SHORT DAYS 4" [	0.513	0.114	0.421	4.8e-06
UNIPROTKB|F1NYU6	247	F1NYU6 "Uncharacterized protei	0.660	0.291	0.315	6.2e-05
UNIPROTKB|E1BYD7	454	E1BYD7 "Uncharacterized protei	0.660	0.158	0.315	0.00018
ZFIN|ZDB-GENE-060810-183	598	si:rp71-56k2.4 "si:rp71-56k2.4	0.486	0.088	0.392	0.00042
FB|FBgn0052110	411	CG32110 [Drosophila melanogast	0.513	0.136	0.344	0.00068
TAIR|locus:2077632	502	ULP1A "UB-like protease 1A" [A	0.853	0.185	0.278	0.00071

FB|FBgn0031208 CG11023 [Drosophila melanogaster (taxid:7227)]

 Score = 127 (49.8 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 25/87 (28%), Positives = 51/87 (58%)

Query:    21 KPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF 80
             +P+     ++L++   +  + +  ++D + +  V+++P+Q  GS DCG+F  MF  Y+  
Sbjct:   396 RPVLDALEKYLREESIFKPKKQFDTSD-FVIESVQNIPRQLDGS-DCGIFSCMFAEYITC 453

Query:    81 GLKLDFDSSHGHYFRKKIAVDIFPGDI 107
              + + F  S   YFRKK+A++I  G++
Sbjct:   454 DVPITFTQSEMLYFRKKMALEIVDGEL 480

GO:0006508 "proteolysis" evidence=IEA

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:    46 ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
             A+ W +  V+D+PQQ+ G  DCG+FML +  +   GL L F   H  YFR + A +I
Sbjct:   428 ANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEI 483

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0016926 "protein desumoylation" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|F1NYU6 F1NYU6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 100 (40.3 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:    29 QWLQDVGFYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDF 86
             Q+LQ+  +     +L S++ W +  ++  ++PQQ  GS DCGVFM  +  Y+     + F
Sbjct:   168 QYLQEESWEKQNVKLSSSE-WTLHSMESHEIPQQSNGS-DCGVFMCKYADYVSRDKPITF 225

Query:    87 DSSHGHYFRKKIAVDI 102
               ++  YFRK++  +I
Sbjct:   226 TENNMPYFRKRMVWEI 241

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|E1BYD7 E1BYD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 100 (40.3 bits), Expect = 0.00018, P = 0.00018
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:    29 QWLQDVGFYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDF 86
             Q+LQ+  +     +L S++ W +  ++  ++PQQ  GS DCGVFM  +  Y+     + F
Sbjct:   375 QYLQEESWEKQNVKLSSSE-WTLHSMESHEIPQQSNGS-DCGVFMCKYADYVSRDKPITF 432

Query:    87 DSSHGHYFRKKIAVDI 102
               ++  YFRK++  +I
Sbjct:   433 TENNMPYFRKRMVWEI 448

GO:0006508 "proteolysis" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

ZFIN|ZDB-GENE-060810-183 si:rp71-56k2.4 "si:rp71-56k2.4" [Danio rerio (taxid:7955)]

 Score = 98 (39.6 bits), Expect = 0.00042, P = 0.00042
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query:    49 WKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
             W V  ++  ++PQQ+ GS DCGVF+  +  Y+  G  L F  +H  YFRK +  +I
Sbjct:   537 WIVSSLRPSEIPQQKNGS-DCGVFICKYADYISRGRNLTFRQNHMPYFRKAMIWEI 591

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0052110 CG32110 [Drosophila melanogaster (taxid:7227)]

 Score = 94 (38.1 bits), Expect = 0.00068, P = 0.00068
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query:    49 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGD 106
             +++   ++VPQQ+    DCGVF+ MF  YL     + F      YFR K+ +++  GD
Sbjct:   352 FRIEDAQNVPQQD-NMNDCGVFVCMFAEYLTRDAPITFSKKDMKYFRTKMVLEL-TGD 407

GO:0008233 "peptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00071, P = 0.00071
 Identities = 29/104 (27%), Positives = 49/104 (47%)

Query:     6 SLVTFREDK-TYLRKFKPLQVVFPQWLQDVGFY---NIRPELQ---SADPWKVRIVKDVP 58
             +++  ++ K  YL  FK  +   P+ L  +  Y    +R + +       W+   V+D+P
Sbjct:   397 AVINIKDQKFQYLDSFKGRE---PKILDALARYFVDEVRDKSEVDLDVSRWRQEFVQDLP 453

Query:    59 QQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
              Q  G  DCG+FM+ +  +   GL L F      YFR + A +I
Sbjct:   454 MQRNGF-DCGMFMVKYIDFYSRGLDLCFTQEQMPYFRARTAKEI 496


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.146   0.465    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109       109   0.00091  102 3  11 22  0.38    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.89u 0.16s 10.05t   Elapsed:  00:00:00
  Total cpu time:  9.89u 0.16s 10.05t   Elapsed:  00:00:00
  Start:  Fri May 10 08:05:14 2013   End:  Fri May 10 08:05:14 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0016926 "protein desumoylation" evidence=IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	1e-09
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	1e-07
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	8e-07

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 3   IYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEP 62
           I DSL++   +    ++ +P+  + P  + +           +  P++++ +  VPQQ P
Sbjct: 111 ILDSLISLHTEAV-KKRIRPIDNMLPYLMSEALKKEQDDPDLT--PFEIKRLTKVPQQ-P 166

Query: 63  GSGDCGVFMLMFTMYLMFGLKLDFDSSHGH--YFRKKIAVDIF 103
            SGDCG ++L F   L  G+  +F ++      FRKK+AVDI+
Sbjct: 167 NSGDCGPYVLKFIELLAEGVPFEFLTADKDVDRFRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 47  DPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
           DP        VPQQ  GS DCGVF+ MF  Y +      F  +     RK +A  I 
Sbjct: 510 DPQIKMKHCKVPQQRNGS-DCGVFVCMFIRYFLENPPEQFSKNDRPRARKNMAHTIK 565

Length = 578

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 45.6 bits (108), Expect = 8e-07
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 49  WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
           W+   V+D+P+Q+ G  DCG+FM+ +  +   GL L F   H  YFR + A +I
Sbjct: 432 WEQEFVEDLPEQKNGY-DCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEI 484

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.96
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.96
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.85
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.79
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.28
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	96.94
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	86.72

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.8e-31  Score=205.67  Aligned_cols=97  Identities=29%  Similarity=0.562  Sum_probs=90.3

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.|||||++. .+..+ +       .|.+||++|+.+|.+..++.+ .|.+..+.++|||.||+ |||||+|+|++|++.
T Consensus       415 i~y~DS~~~~-~nr~~-~-------aL~~Yl~~E~~~k~~~~~d~s-~w~~~~~~~iP~Q~Ng~-DCG~f~c~~~~~~s~  483 (511)
T KOG0778|consen  415 IEYYDSLGGG-PNRIC-D-------ALAKYLQDESRDKSKKDFDVS-GWTIEFVQNIPQQRNGS-DCGMFVCKYADYISR  483 (511)
T ss_pred             EEEeeccCCC-CcchH-H-------HHHHHHHHHHhhhhcCCCCcc-chhhhhhhccccccCCC-ccceEEeeechhhcc
Confidence            6899999972 44455 8       999999999999999999999 99999889999999999 999999999999999


Q ss_pred             CCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908           81 GLKLDFDSSHGHYFRKKIAVDIFPGDIA  108 (109)
Q Consensus        81 ~~~~~f~q~~~~~~R~~~~~el~~~~l~  108 (109)
                      +.|++|+|.|||+||++||+||++++|+
T Consensus       484 ~~p~~ftq~dmp~fR~~m~~eI~~~~l~  511 (511)
T KOG0778|consen  484 DVPLTFTQQDMPYFRKKMAKEILHLKLL  511 (511)
T ss_pred             CCCcccChhhhHHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999999885

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.96  E-value=3e-29  Score=195.91  Aligned_cols=96  Identities=28%  Similarity=0.517  Sum_probs=89.1

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.|||||++  .+..+++       .|++|+..|+.++.+..++.+ .|+...+.++|||.||+ |||||||+||+|++.
T Consensus       394 I~yyDSLgg--~~~~vL~-------~L~rYL~~E~kdK~g~d~D~s-~W~~~~~~~vPQQ~NG~-DCGVFVL~yAE~~Sr  462 (490)
T PLN03189        394 FQYLDSLKG--RDPKILD-------ALAKYYVDEVKDKSEKDIDVS-SWEQEFVEDLPEQKNGY-DCGMFMIKYIDFYSR  462 (490)
T ss_pred             EEEEeCCCC--CCHHHHH-------HHHHHHHHHHhhhcCCCcchh-cceeccCCCCCCCCCCC-CHHHHHHHHHHHHcC
Confidence            689999999  6778888       999999999999888888887 99887667899999999 999999999999999


Q ss_pred             CCCCccCcccHHHHHHHHHHHHhcCCC
Q 033908           81 GLKLDFDSSHGHYFRKKIAVDIFPGDI  107 (109)
Q Consensus        81 ~~~~~f~q~~~~~~R~~~~~el~~~~l  107 (109)
                      |.+++|+|+||++||++|++||++.++
T Consensus       463 G~~LtFSQeDMp~fRrRma~EIl~~r~  489 (490)
T PLN03189        463 GLGLCFGQEHMPYFRLRTAKEILRLKA  489 (490)
T ss_pred             CCCCCcChhhhHHHHHHHHHHHHHhhc
Confidence            999999999999999999999998875

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.8e-22  Score=158.27  Aligned_cols=93  Identities=29%  Similarity=0.368  Sum_probs=80.7

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.|||||++  ....+++       .|++|+.+|++...++.     +|......++|||.||+ |||||||+|++|++.
T Consensus       478 i~~~DSLan--~~~~v~~-------~L~~Y~ldE~k~~~~k~-----~~~~~~~~~vPqQ~Ng~-DCGV~vc~~~~~~~~  542 (578)
T COG5160         478 ILYFDSLAN--THDPVLE-------FLRSYLLDEYKIQHDKD-----PQIKMKHCKVPQQRNGS-DCGVFVCMFIRYFLE  542 (578)
T ss_pred             eEEeccccc--CcHHHHH-------HHHHHHHHHHhcccCCc-----hhhhhhcCCCCCCCCCC-ccceEEEEeeeeccc
Confidence            689999999  5688888       99999999987554432     45544456899999999 999999999999999


Q ss_pred             CCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908           81 GLKLDFDSSHGHYFRKKIAVDIFPGDIA  108 (109)
Q Consensus        81 ~~~~~f~q~~~~~~R~~~~~el~~~~l~  108 (109)
                      +.|..|++.|++.+|+.|+++|++..|.
T Consensus       543 ~~p~~f~~nd~~r~Rk~m~h~i~~~qi~  570 (578)
T COG5160         543 NPPEQFSKNDRPRARKNMAHTIKDLQIN  570 (578)
T ss_pred             CChhhcCccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987653

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.79  E-value=5.3e-19  Score=125.02  Aligned_cols=97  Identities=30%  Similarity=0.501  Sum_probs=70.4

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.+||||++  ...  .+........+..+|..++....+...+.. +|+...+.++|||.|++ |||||||+|+++++.
T Consensus       109 i~~~DSl~~--~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~pqQ~n~~-dCGv~vl~~~~~~~~  182 (216)
T PF02902_consen  109 IYVYDSLGS--SNN--DKRYKRVIENIIPFLKREYKKKEGRDPDKS-PFKIVRPPNVPQQPNGY-DCGVYVLKFMECLLE  182 (216)
T ss_dssp             EEEE-TTST--SSH---HHHHHHHHHHHHHHHHHHHHHHSSCT-TT-TCEEEEECTS-SSSSSS-CHHHHHHHHHHHHHC
T ss_pred             EEEEecccc--ccc--cccchhhhhhhhhhhhhccccccccccccc-eeeecccccccCCCCCC-CcHHHHHHHHHHHHh
Confidence            579999999  444  000111223888888877765544444555 88887777899999999 999999999999999


Q ss_pred             CCCCc----cCcccHHHHHHHHHHHHh
Q 033908           81 GLKLD----FDSSHGHYFRKKIAVDIF  103 (109)
Q Consensus        81 ~~~~~----f~q~~~~~~R~~~~~el~  103 (109)
                      +.+..    |++++++.+|++++.++-
T Consensus       183 ~~~~~~~~~l~~~~i~~~r~~~a~~~~  209 (216)
T PF02902_consen  183 GPSFDFSQELTEEDIKNFRKKLAVDLY  209 (216)
T ss_dssp             THHSTGCCSBTGHHHHHHHHHHHH---
T ss_pred             CCCCcccccCCHHHHHHHHHHHHhhcc
Confidence            98766    799999999999997653

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.28  E-value=1.1e-11  Score=88.80  Aligned_cols=81  Identities=20%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             EEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhcC
Q 033908            2 RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFG   81 (109)
Q Consensus         2 ~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~~   81 (109)
                      .||||+.+  .+...++   .++++++..+..+..              .+.+...|||+||+ |||+|||++++.++..
T Consensus       123 ~hyDS~~n--~nt~~a~---~l~~kl~~ll~~~~~--------------~~~~~~~~qQqNgy-DCG~hV~~~t~~l~~~  182 (223)
T KOG3246|consen  123 YHYDSLSN--GNTKDAK---SLMKKLRALLKKKFA--------------KRVECKCLQQQNGY-DCGLHVCCNTRVLAER  182 (223)
T ss_pred             EEeecccC--CCcHHHH---HHHHHHHHHHhhhhh--------------hcccccChhhhcCC-chhHHHHHHHHHHHHH
Confidence            58999999  5655555   234466666664321              11144678999999 9999999998877543


Q ss_pred             ----CCCccCcccHHHHHHHHHHHH
Q 033908           82 ----LKLDFDSSHGHYFRKKIAVDI  102 (109)
Q Consensus        82 ----~~~~f~q~~~~~~R~~~~~el  102 (109)
                          .-.+-.|.+.+..|+.+-.||
T Consensus       183 ~~~~~~~~~~~~~~~~~i~~lr~~l  207 (223)
T KOG3246|consen  183 LLRCPYATSSQLLVVDLIKALREEL  207 (223)
T ss_pred             HhccccccccchhhHHHHHHHHHHH
Confidence                223444555544555444443

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00066  Score=55.78  Aligned_cols=41  Identities=32%  Similarity=0.441  Sum_probs=34.6

Q ss_pred             CCCCCCCCcchHHHHHHHHHHhcCCCC-------------ccCcccHHHHHHHHH
Q 033908           58 PQQEPGSGDCGVFMLMFTMYLMFGLKL-------------DFDSSHGHYFRKKIA   99 (109)
Q Consensus        58 PqQ~N~~~DCGvFvl~~~e~l~~~~~~-------------~f~q~~~~~~R~~~~   99 (109)
                      |||.|.+ |||+|++.|++.+..+.+.             .|.+.++-.+|..+-
T Consensus       528 p~q~n~~-dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~r  581 (595)
T KOG0779|consen  528 PQQNNDV-DCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPKEILKFRDEIR  581 (595)
T ss_pred             cCccCcc-cchhhHHHHHHHhhhChhhhcccccccccccccCCchHHhhhhhhhh
Confidence            8999999 9999999999999776654             388888888887664

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=86.72  E-value=0.81  Score=32.21  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             CceeeecCCCCCCCCCCCcchHHHHHHHHHHhcCC
Q 033908           48 PWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGL   82 (109)
Q Consensus        48 ~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~~~   82 (109)
                      .+++.. ..+.-|+..+ |||+|-|.+|.....+.
T Consensus       132 ~~~~~~-ie~diQkS~~-dC~IFsLs~AkK~~~~~  164 (177)
T PF03421_consen  132 NAKFAV-IEMDIQKSPS-DCGIFSLSLAKKMYKED  164 (177)
T ss_pred             CcEEEE-EecccccCcC-cchhhHHHHHHHHhhcc
Confidence            444543 3689999999 99999999999886644

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	4e-10
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	1e-09
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	7e-09
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	1e-04

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 54.0 bits (129), Expect = 4e-10
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 47  DPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
           + W++   K  ++PQQ  GS DCG+F   +   +     ++F   H  YFRK++  +I 
Sbjct: 176 NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 233

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 53  IVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
           I  D PQQ  G  DCG+++ M T+Y      LDFD       R+ IA  I
Sbjct: 167 IHLDCPQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLI 215

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 50.2 bits (119), Expect = 7e-09
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 45  SADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
                      ++PQQ  GS DCG+F   +  Y+     + F       FRKK+  +I 
Sbjct: 164 LEWTHHSMKPHEIPQQLNGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEIL 221

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 38  NIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKK 97
            +   L         + +  P Q+    DCG++++  T  L          S        
Sbjct: 135 KLEAFLGRKGDKLAFVEEKAPAQQNSY-DCGMYVICNTEALCQNFFRQQTESLLQLLTPA 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.96
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.96
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.92
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.81
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.8
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.7

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.96  E-value=2.6e-29  Score=180.54  Aligned_cols=97  Identities=25%  Similarity=0.446  Sum_probs=88.0

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeee--cCCCCCCCCCCCcchHHHHHHHHHH
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRI--VKDVPQQEPGSGDCGVFMLMFTMYL   78 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~--~~~~PqQ~N~~~DCGvFvl~~~e~l   78 (109)
                      |.|||||++  .+..+.+       .|++||..|+.++.+..++.+ .|++..  ..++|||.||+ |||||||+||+++
T Consensus       128 i~~~DSl~~--~~~~~~~-------~l~~~l~~e~~~k~~~~~~~~-~w~~~~~~~~~~PqQ~Ng~-DCGvfvl~~~~~~  196 (226)
T 1th0_A          128 LKYLDSMGQ--KGHRICE-------ILLQYLQDESKTKRNSDLNLL-EWTHHSMKPHEIPQQLNGS-DCGMFTCKYADYI  196 (226)
T ss_dssp             EEEECTTCC--CCHHHHH-------HHHHHHHHHHHHHTSCCCCGG-GCEEEECCTTTSCCCCSSS-CHHHHHHHHHHHH
T ss_pred             eEEEcCCCC--CchHHHH-------HHHHHHHHHHHHhcCCCCCcc-cceeccccCCCCCCCCCCC-CHHHHHHHHHHHH
Confidence            579999999  6677777       999999999988877777777 898753  36899999999 9999999999999


Q ss_pred             hcCCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908           79 MFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  108 (109)
Q Consensus        79 ~~~~~~~f~q~~~~~~R~~~~~el~~~~l~  108 (109)
                      +.+.|++|+|+||+++|++|++||++|+|+
T Consensus       197 ~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~  226 (226)
T 1th0_A          197 SRDKPITFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             TTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             hCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence            999999999999999999999999999986

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.96  E-value=5.1e-29  Score=180.29  Aligned_cols=97  Identities=26%  Similarity=0.514  Sum_probs=88.0

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeee--cCCCCCCCCCCCcchHHHHHHHHHH
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRI--VKDVPQQEPGSGDCGVFMLMFTMYL   78 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~--~~~~PqQ~N~~~DCGvFvl~~~e~l   78 (109)
                      |.|||||++  .+....+       .|.+||..++.++.+..++.. .|++..  ..++|||.||+ |||||||+||+++
T Consensus       140 i~~~DSl~~--~~~~~~~-------~l~~~L~~e~~~k~~~~~~~~-~w~~~~~~~~~~PqQ~Ng~-DCGvfvl~~~e~~  208 (238)
T 2xph_A          140 ITYYDSMGG--INNEACR-------ILLQYLKQESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DCGMFACKYADCI  208 (238)
T ss_dssp             EEEECTTCC--CCHHHHH-------HHHHHHHHHHHHHHCSCCCCT-TCEEEECCSSSSCCCSBGG-GHHHHHHHHHHHH
T ss_pred             EEEeecccC--CCHHHHH-------HHHHHHHHHHHHhcCCCcCcc-cceecccCCCCCCCCCCCC-CHHHHHHHHHHHH
Confidence            579999999  6677777       899999999988877777777 898752  46899999999 9999999999999


Q ss_pred             hcCCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908           79 MFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  108 (109)
Q Consensus        79 ~~~~~~~f~q~~~~~~R~~~~~el~~~~l~  108 (109)
                      +.+.+++|+|+||+++|++|++||++|+|+
T Consensus       209 ~~~~~~~f~q~dm~~~R~~m~~eil~~~ll  238 (238)
T 2xph_A          209 TKDRPINFTQQHMPYFRKRMVWEILHRKLL  238 (238)
T ss_dssp             HTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             hcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999986

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.92  E-value=9.1e-25  Score=156.46  Aligned_cols=91  Identities=26%  Similarity=0.367  Sum_probs=76.6

Q ss_pred             CEEEeCCCCCCCCh---hHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHH
Q 033908            1 MRIYDSLVTFREDK---TYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMY   77 (109)
Q Consensus         1 I~~~DSl~~~~~~~---~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~   77 (109)
                      |.|||||+++ .+.   .+.+       .|++|+..|+.++.+     . .|++.. .++|||.||+ |||||||+||++
T Consensus       127 i~~~DSl~~~-~~~~~~~i~~-------~l~~~l~~e~~~~~~-----~-~~~~~~-~~~PqQ~N~~-DCGvfv~~~~~~  190 (221)
T 1euv_A          127 IGYVDSLSNG-PNAMSFAILT-------DLQKYVMEESKHTIG-----E-DFDLIH-LDCPQQPNGY-DCGIYVCMNTLY  190 (221)
T ss_dssp             EEEECSSCCS-CCHHHHHHHH-------HHHHHHHHHTTSSSC-----T-TCEEEE-ECCCCCSSSS-THHHHHHHHHHH
T ss_pred             EEEEecCCCC-CcchHHHHHH-------HHHHHHHHHHHHhcC-----C-CceEee-cCCCCCCCCc-CHHHHHHHHHHH
Confidence            5799999873 232   2344       899999988765433     2 677654 5799999999 999999999999


Q ss_pred             HhcCCCCccCcccHHHHHHHHHHHHhcCCC
Q 033908           78 LMFGLKLDFDSSHGHYFRKKIAVDIFPGDI  107 (109)
Q Consensus        78 l~~~~~~~f~q~~~~~~R~~~~~el~~~~l  107 (109)
                      ++.+.+++|+|+||+.+|++|+.+|++++|
T Consensus       191 ~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l  220 (221)
T 1euv_A          191 GSADAPLDFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             HHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999986

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.81  E-value=5.8e-20  Score=138.19  Aligned_cols=92  Identities=20%  Similarity=0.265  Sum_probs=74.6

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCC--CCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHH
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRP--ELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYL   78 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~--~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l   78 (109)
                      |.|||||+++ .++.++.       .|++||+.|+.++++.  .++.. .|.... +.+|+|.||+ |||||||+|++++
T Consensus       208 Il~lDSL~~~-~~~~~~~-------~Lr~YL~~E~~~k~~~~~~f~~~-~~~~~~-~~~P~Q~N~~-DCGvfvl~~~e~~  276 (323)
T 3eay_A          208 ILILDSLKAA-SVQNTVQ-------NLREYLEVEWEVKLKTHRQFSKT-NMVDLC-PKVPKQDNSS-DCGVYLLQYVESF  276 (323)
T ss_dssp             EEEECSSCCS-SHHHHHH-------HHHHHHHHHHHHHHSSCCCCCTT-TSCEEC-CBCCCCCSTT-CHHHHHHHHHHHH
T ss_pred             EEEEECCCCC-CcchHHH-------HHHHHHHHHHHhhcCCCcCCCHh-Hceecc-CCCCCcCCCC-cHHHHHHHHHHHH
Confidence            6899999983 3477888       9999999999988643  45444 677654 5799999999 9999999999999


Q ss_pred             hcCCCCc----------cCcccHHHHHHHHHHHHh
Q 033908           79 MFGLKLD----------FDSSHGHYFRKKIAVDIF  103 (109)
Q Consensus        79 ~~~~~~~----------f~q~~~~~~R~~~~~el~  103 (109)
                      +.+.+++          |++.++...|+.|..-|.
T Consensus       277 ~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~  311 (323)
T 3eay_A          277 FKDPIVNFELPIHLEKWFPRHVIKTKREDIRELIL  311 (323)
T ss_dssp             HHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHH
T ss_pred             HhCCccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence            9988655          556788999998886554

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.80  E-value=4.8e-20  Score=130.90  Aligned_cols=86  Identities=15%  Similarity=0.055  Sum_probs=63.9

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.|||||++  .+...++       .+.++|......+.      . .|++.. .++|||.||+ |||||||+||++++.
T Consensus       115 i~~~DSl~~--~n~~~~~-------~l~~~l~~~l~~~~------~-~~~~~~-~~~PqQ~N~~-DCGvfvl~~~~~l~~  176 (212)
T 2bkr_A          115 FFHYDSHSR--SNSVHAK-------QVAEKLEAFLGRKG------D-KLAFVE-EKAPAQQNSY-DCGMYVICNTEALCQ  176 (212)
T ss_dssp             EEEECSSTT--TTHHHHH-------HHHHHHHHHHSCTT------C-CCCEEE-CCCCCCSSSS-THHHHHHHHHHHHHH
T ss_pred             EEEEeCCCC--CCHHHHH-------HHHHHHHHHhCCcc------c-cceEeE-CCCCCCCCCC-cHHHHHHHHHHHHHH
Confidence            579999998  6666665       44444443332211      1 354543 5799999999 999999999999987


Q ss_pred             CC--------CCccCcccHHHHHHHHHHHHhc
Q 033908           81 GL--------KLDFDSSHGHYFRKKIAVDIFP  104 (109)
Q Consensus        81 ~~--------~~~f~q~~~~~~R~~~~~el~~  104 (109)
                      +.        +.+|++++++.+|++|...|.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~  208 (212)
T 2bkr_A          177 NFFRQQTESLLQLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             HHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence            65        2469999999999999988764

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.70  E-value=1.5e-17  Score=116.34  Aligned_cols=84  Identities=18%  Similarity=0.016  Sum_probs=57.6

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.|||||++  .+.. ..   .++..|+.|+..+             ..++. ..++|||.||+ |||||||+||++++.
T Consensus        91 ~~~~DSl~~--~~~~-~~---~l~~~l~~~l~~~-------------~~~~~-~~~~PqQ~Ng~-DCGvfv~~~~~~l~~  149 (186)
T 2oix_A           91 AYHYDSMAQ--KDPQ-QR---YLADMAAYHLGLD-------------YQQTH-EMPIAIQSDGY-SAGDHVLTGIEVLAH  149 (186)
T ss_dssp             EEEECCCSS--CCHH-HH---HHHHHHHHHTTCC-------------GGGCE-EECBCCCC--C-CHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCC--CCHH-HH---HHHHHHHHHhCCC-------------ccccc-cCCCCCCCCCC-CHHHHHHHHHHHHHH
Confidence            489999998  5544 33   1223444444311             11133 34799999999 999999999999975


Q ss_pred             C-------CCCccCcccHHHHHHHHHHHHhcC
Q 033908           81 G-------LKLDFDSSHGHYFRKKIAVDIFPG  105 (109)
Q Consensus        81 ~-------~~~~f~q~~~~~~R~~~~~el~~~  105 (109)
                      +       .+..|+++++..+|+.|...|.++
T Consensus       150 ~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          150 RVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             HHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred             HHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence            3       234588999999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	1e-09
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	2e-09
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	5e-09

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 21  KPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF 80
           +  +++     Q+      +    +      +  +++PQQ  GS D G+F   +   +  
Sbjct: 140 EACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGS-DAGMFACKYADCITK 198

Query: 81  GLKLDFDSSHGHYFRKKIAVDIF 103
              ++F   H  YFRK++  +I 
Sbjct: 199 DRPINFTQQHMPYFRKRMVWEIL 221

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 2e-09
 Identities = 17/79 (21%), Positives = 29/79 (36%)

Query: 29  QWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDS 88
           Q+LQD        +L   +     +      Q+    DCG+F   +  Y+     + F  
Sbjct: 147 QYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQ 206

Query: 89  SHGHYFRKKIAVDIFPGDI 107
                FRKK+  +I    +
Sbjct: 207 HQMPLFRKKMVWEILHQQL 225

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (117), Expect = 5e-09
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 53  IVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
           I  D PQQ  G  DCG+++ M T+Y      LDFD       R+ IA  I
Sbjct: 167 IHLDCPQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLI 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.93
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.92
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.91
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.68

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.3e-26  Score=159.07  Aligned_cols=96  Identities=25%  Similarity=0.484  Sum_probs=84.9

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceee--ecCCCCCCCCCCCcchHHHHHHHHHH
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVR--IVKDVPQQEPGSGDCGVFMLMFTMYL   78 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~--~~~~~PqQ~N~~~DCGvFvl~~~e~l   78 (109)
                      |.+||||++  .+.....       .+..++..++..+....++.. .|+..  .+.++|||.||+ |||||||+||+++
T Consensus       128 i~~~DSl~~--~~~~~~~-------~i~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~pqQ~Ng~-DCGvfvl~~~~~~  196 (225)
T d2iy1a1         128 ITYYDSMGG--INNEACR-------ILLQYLKQESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DAGMFACKYADCI  196 (225)
T ss_dssp             EEEECTTCC--CCHHHHH-------HHHHHHHHHHHHHHSSCCCCT-TCEEEECCTTTSCCCCSSS-THHHHHHHHHHHH
T ss_pred             EEEEecCCC--CchHHHH-------HHHHHHHHHHHHhccCccCcc-cceecccccccCCCCCCCC-ChHHHHHHHHHHH
Confidence            579999999  7777877       888888888877777777777 88764  346899999999 9999999999999


Q ss_pred             hcCCCCccCcccHHHHHHHHHHHHhcCCC
Q 033908           79 MFGLKLDFDSSHGHYFRKKIAVDIFPGDI  107 (109)
Q Consensus        79 ~~~~~~~f~q~~~~~~R~~~~~el~~~~l  107 (109)
                      +.+.+++|+|+||+++|++|+.||++++|
T Consensus       197 ~~~~~~~~~q~~~~~~R~~~~~~l~~~~l  225 (225)
T d2iy1a1         197 TKDRPINFTQQHMPYFRKRMVWEILHRKL  225 (225)
T ss_dssp             HTTCCCCCCGGGHHHHHHHHHHHHHTTCC
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999999999987

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=157.83  Aligned_cols=97  Identities=25%  Similarity=0.445  Sum_probs=84.2

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceee--ecCCCCCCCCCCCcchHHHHHHHHHH
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVR--IVKDVPQQEPGSGDCGVFMLMFTMYL   78 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~--~~~~~PqQ~N~~~DCGvFvl~~~e~l   78 (109)
                      |.+|||+++  .+.....       .++.|+..++..+.....+.. .|+..  .+..+|||.||+ |||||||+||+++
T Consensus       128 i~~~DSl~~--~~~~~~~-------~i~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~pqQ~N~~-DCGvfvl~~~~~~  196 (226)
T d1th0a_         128 LKYLDSMGQ--KGHRICE-------ILLQYLQDESKTKRNSDLNLL-EWTHHSMKPHEIPQQLNGS-DCGMFTCKYADYI  196 (226)
T ss_dssp             EEEECTTCC--CCHHHHH-------HHHHHHHHHHHHHTSCCCCGG-GCEEEECCTTTSCCCCSSS-CHHHHHHHHHHHH
T ss_pred             EEEeccccC--CChHHHH-------HHHHHHHHHHHHhhCCCcCcc-cceeeeeccCCCCCCCCCC-CHHHHHHHHHHHH
Confidence            579999999  7788888       899999998887666555555 56543  346799999999 9999999999999


Q ss_pred             hcCCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908           79 MFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  108 (109)
Q Consensus        79 ~~~~~~~f~q~~~~~~R~~~~~el~~~~l~  108 (109)
                      +.+.+++|+|.||+.+|++|+.||++++|+
T Consensus       197 ~~~~~~~~tq~di~~~R~~i~~el~~~~l~  226 (226)
T d1th0a_         197 SRDKPITFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             TTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999986

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-24  Score=152.97  Aligned_cols=94  Identities=24%  Similarity=0.341  Sum_probs=76.0

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.|||||++  .+.....   .+...|++|+..++..+.+     . .|++.. .++|||+||+ |||||||+||++++.
T Consensus       127 i~~~DSl~~--~~~~~~~---~i~~~l~~~l~~~~~~~~~-----~-~~~~~~-~~~PqQ~N~~-DCGvfvl~~~~~~~~  193 (221)
T d1euva_         127 IGYVDSLSN--GPNAMSF---AILTDLQKYVMEESKHTIG-----E-DFDLIH-LDCPQQPNGY-DCGIYVCMNTLYGSA  193 (221)
T ss_dssp             EEEECSSCC--SCCHHHH---HHHHHHHHHHHHHTTSSSC-----T-TCEEEE-ECCCCCSSSS-THHHHHHHHHHHHHT
T ss_pred             eeeeccccC--CCcHHHH---HHHHHHHHHHHHHHHhhcC-----C-CCeeee-ccCCCCCCCC-ChHHHHHHHHHHHhC
Confidence            579999998  3333322   1234788888887654332     2 576654 4799999999 999999999999999


Q ss_pred             CCCCccCcccHHHHHHHHHHHHhcCCC
Q 033908           81 GLKLDFDSSHGHYFRKKIAVDIFPGDI  107 (109)
Q Consensus        81 ~~~~~f~q~~~~~~R~~~~~el~~~~l  107 (109)
                      |.+++|+|.||+.+|++|+.+|+++.|
T Consensus       194 ~~~~~~~q~d~~~~R~~i~~~il~~~l  220 (221)
T d1euva_         194 DAPLDFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             TCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999987

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-17  Score=115.01  Aligned_cols=85  Identities=15%  Similarity=0.081  Sum_probs=63.7

Q ss_pred             CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908            1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF   80 (109)
Q Consensus         1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~   80 (109)
                      |.||||+++  .+...++       .+.+++..+...+ +     . .++.. ...+|||+||+ |||||||+||++++.
T Consensus       115 i~~~DSl~~--~~~~~~~-------~~~~~l~~~~~~~-~-----~-~~~~~-~~~~p~Q~N~~-DCGvfv~~~~~~l~~  176 (212)
T d2bkra1         115 FFHYDSHSR--SNSVHAK-------QVAEKLEAFLGRK-G-----D-KLAFV-EEKAPAQQNSY-DCGMYVICNTEALCQ  176 (212)
T ss_dssp             EEEECSSTT--TTHHHHH-------HHHHHHHHHHSCT-T-----C-CCCEE-ECCCCCCSSSS-THHHHHHHHHHHHHH
T ss_pred             EEEecCCCc--CCHHHHH-------HHHHHHHHHhccc-c-----C-ceeee-ecccCCCCCCC-ChHHHHHHHHHHHHH
Confidence            579999999  6777777       6777776664321 1     1 34444 35799999999 999999999999865


Q ss_pred             CC----C----CccCcccHHHHHHHHHHHHh
Q 033908           81 GL----K----LDFDSSHGHYFRKKIAVDIF  103 (109)
Q Consensus        81 ~~----~----~~f~q~~~~~~R~~~~~el~  103 (109)
                      +.    .    ..+++++++.+|+.|...|.
T Consensus       177 ~~~~~~~~~~~~~~~~~~i~~~R~~l~~lI~  207 (212)
T d2bkra1         177 NFFRQQTESLLQLLTPAYITKKRGEWKDLIA  207 (212)
T ss_dssp             HHHSCCCCCHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hcccccchhhhhcCCHHHHHHHHHHHHHHHH
Confidence            32    1    23789999999999987665